Query 020461
Match_columns 326
No_of_seqs 177 out of 1562
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 03:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 3.4E-46 1.2E-50 317.3 39.1 284 4-316 49-340 (340)
2 1vyh_C Platelet-activating fac 100.0 5E-46 1.7E-50 324.0 37.7 287 4-318 102-410 (410)
3 3zwl_B Eukaryotic translation 100.0 2.8E-45 9.4E-50 314.2 38.1 320 2-324 24-351 (369)
4 3ow8_A WD repeat-containing pr 100.0 1.4E-44 4.7E-49 304.8 37.7 286 5-318 27-320 (321)
5 3frx_A Guanine nucleotide-bind 100.0 7E-44 2.4E-48 300.4 37.2 294 4-319 11-317 (319)
6 2pbi_B Guanine nucleotide-bind 100.0 1E-43 3.5E-48 303.6 38.1 284 4-316 58-354 (354)
7 3iz6_a 40S ribosomal protein R 100.0 2.4E-44 8.3E-49 310.5 31.4 288 4-320 60-376 (380)
8 2ynn_A Coatomer subunit beta'; 100.0 1.2E-42 4E-47 291.0 38.1 290 4-320 7-303 (304)
9 4ery_A WD repeat-containing pr 100.0 7E-42 2.4E-46 287.3 39.0 289 4-318 17-311 (312)
10 4gqb_B Methylosome protein 50; 100.0 1.3E-42 4.3E-47 295.2 33.6 248 6-321 78-333 (344)
11 2xzm_R RACK1; ribosome, transl 100.0 6.7E-42 2.3E-46 291.2 37.4 297 4-319 15-340 (343)
12 4g56_B MGC81050 protein; prote 100.0 7.8E-43 2.7E-47 298.4 31.7 291 4-321 36-345 (357)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.2E-42 3.1E-46 290.6 37.0 303 4-320 9-336 (345)
14 1nr0_A Actin interacting prote 100.0 6.6E-42 2.3E-46 312.6 37.3 301 5-319 142-567 (611)
15 4aow_A Guanine nucleotide-bind 100.0 4.9E-41 1.7E-45 285.0 37.8 295 5-319 33-337 (340)
16 1nr0_A Actin interacting prote 100.0 3.1E-41 1.1E-45 308.2 35.8 300 6-320 14-356 (611)
17 2pm7_B Protein transport prote 100.0 3.7E-41 1.3E-45 281.0 33.2 258 4-320 3-286 (297)
18 2hes_X YDR267CP; beta-propelle 100.0 3.1E-40 1.1E-44 279.4 36.2 292 4-319 8-328 (330)
19 4e54_B DNA damage-binding prot 100.0 9.6E-41 3.3E-45 293.1 32.4 301 5-320 114-431 (435)
20 3bg1_A Protein SEC13 homolog; 100.0 1.8E-41 6.3E-46 285.2 26.2 254 4-320 7-294 (316)
21 1erj_A Transcriptional repress 100.0 1.4E-39 4.6E-44 282.0 37.2 285 8-319 62-389 (393)
22 4gqb_B Methylosome protein 50; 100.0 7.3E-41 2.5E-45 284.3 28.0 251 5-321 25-291 (344)
23 3dm0_A Maltose-binding peripla 100.0 1.4E-39 4.8E-44 301.6 36.1 298 4-319 376-693 (694)
24 2ymu_A WD-40 repeat protein; u 100.0 6.7E-39 2.3E-43 291.0 38.7 279 4-316 297-577 (577)
25 3ei3_B DNA damage-binding prot 100.0 5.2E-39 1.8E-43 277.4 34.6 296 4-319 67-382 (383)
26 4ggc_A P55CDC, cell division c 100.0 1.2E-38 4.2E-43 267.7 35.6 282 13-319 28-315 (318)
27 1r5m_A SIR4-interacting protei 100.0 1.1E-38 3.8E-43 278.2 36.5 291 9-318 107-424 (425)
28 4gga_A P55CDC, cell division c 100.0 3.1E-38 1E-42 275.9 36.2 282 12-319 107-395 (420)
29 2ymu_A WD-40 repeat protein; u 100.0 5.2E-38 1.8E-42 285.1 38.7 284 4-320 256-540 (577)
30 1sq9_A Antiviral protein SKI8; 100.0 3.7E-39 1.3E-43 279.3 29.6 292 4-319 10-395 (397)
31 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-38 6.1E-43 272.5 33.2 303 3-319 1-361 (372)
32 1gxr_A ESG1, transducin-like e 100.0 1.7E-37 5.8E-42 262.6 36.6 283 4-317 45-335 (337)
33 3dwl_C Actin-related protein 2 100.0 1.7E-39 5.6E-44 279.8 24.2 304 3-317 4-377 (377)
34 4a11_B DNA excision repair pro 100.0 3E-37 1E-41 267.9 34.8 291 4-320 37-366 (408)
35 2pm9_A Protein WEB1, protein t 100.0 3.1E-38 1.1E-42 275.1 28.5 303 3-320 60-415 (416)
36 3gre_A Serine/threonine-protei 100.0 3.4E-38 1.2E-42 277.0 27.4 293 7-316 60-437 (437)
37 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-36 3.6E-41 255.2 35.2 282 4-322 12-299 (313)
38 3jrp_A Fusion protein of prote 100.0 2.5E-37 8.4E-42 265.8 31.2 256 4-319 5-287 (379)
39 4aez_A CDC20, WD repeat-contai 100.0 1.1E-36 3.9E-41 264.4 34.8 289 8-321 89-382 (401)
40 2ynn_A Coatomer subunit beta'; 100.0 9.1E-37 3.1E-41 255.2 32.7 252 43-320 4-260 (304)
41 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-36 3.8E-41 258.3 33.2 273 4-320 5-338 (351)
42 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-36 3.9E-41 299.0 37.7 305 4-321 609-1036(1249)
43 3i2n_A WD repeat-containing pr 100.0 4.4E-37 1.5E-41 262.3 30.3 301 4-319 12-353 (357)
44 3k26_A Polycomb protein EED; W 100.0 4E-37 1.4E-41 263.3 28.5 292 4-318 12-365 (366)
45 2j04_B YDR362CP, TAU91; beta p 100.0 5.8E-37 2E-41 273.1 28.6 261 5-322 202-520 (524)
46 3ow8_A WD repeat-containing pr 100.0 1E-35 3.6E-40 250.6 31.6 235 5-253 75-311 (321)
47 1vyh_C Platelet-activating fac 100.0 1.4E-35 4.9E-40 258.1 33.0 235 4-252 144-400 (410)
48 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-36 9.7E-41 285.4 30.8 240 4-253 11-296 (902)
49 1gxr_A ESG1, transducin-like e 100.0 5.4E-36 1.8E-40 253.4 29.4 286 8-321 7-298 (337)
50 2pm9_A Protein WEB1, protein t 100.0 2.1E-36 7.3E-41 263.5 27.6 293 9-321 11-339 (416)
51 1r5m_A SIR4-interacting protei 100.0 2.5E-35 8.6E-40 257.0 33.3 283 7-320 42-362 (425)
52 4h5i_A Guanine nucleotide-exch 100.0 5.4E-36 1.8E-40 256.7 28.2 285 11-323 15-347 (365)
53 1pgu_A Actin interacting prote 100.0 3.1E-35 1.1E-39 268.5 34.7 296 4-320 197-615 (615)
54 2j04_B YDR362CP, TAU91; beta p 100.0 5.7E-37 2E-41 273.1 22.3 254 9-320 132-429 (524)
55 3v7d_B Cell division control p 100.0 1.7E-34 5.8E-39 255.3 37.0 288 4-323 115-425 (464)
56 3mkq_A Coatomer beta'-subunit; 100.0 5.9E-35 2E-39 275.2 36.0 291 4-320 7-303 (814)
57 2xyi_A Probable histone-bindin 100.0 1E-35 3.5E-40 260.7 27.6 274 4-323 122-414 (430)
58 3vl1_A 26S proteasome regulato 100.0 1.2E-35 4.1E-40 259.2 27.8 281 13-319 59-365 (420)
59 4g56_B MGC81050 protein; prote 100.0 1.6E-35 5.5E-40 253.1 26.9 278 14-320 9-302 (357)
60 3sfz_A APAF-1, apoptotic pepti 100.0 6.5E-36 2.2E-40 293.6 27.9 280 8-318 959-1248(1249)
61 3jro_A Fusion protein of prote 100.0 8E-36 2.7E-40 278.3 27.0 256 4-319 3-285 (753)
62 2oaj_A Protein SNI1; WD40 repe 100.0 1.4E-35 4.6E-40 280.8 28.4 297 6-319 147-661 (902)
63 3dw8_B Serine/threonine-protei 100.0 8E-35 2.8E-39 256.0 30.7 292 9-316 27-443 (447)
64 2pbi_B Guanine nucleotide-bind 100.0 4.8E-34 1.6E-38 243.7 34.3 256 43-320 55-316 (354)
65 3vl1_A 26S proteasome regulato 100.0 1.8E-34 6.2E-39 251.8 31.0 289 11-319 98-419 (420)
66 1p22_A F-BOX/WD-repeat protein 100.0 5.8E-34 2E-38 250.0 33.9 276 7-321 130-416 (435)
67 1yfq_A Cell cycle arrest prote 100.0 1E-34 3.5E-39 246.3 28.1 288 4-317 5-322 (342)
68 2aq5_A Coronin-1A; WD40 repeat 100.0 3.2E-35 1.1E-39 255.3 24.9 253 4-320 75-343 (402)
69 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-33 7.4E-38 247.0 36.8 278 4-321 153-444 (445)
70 1got_B GT-beta; complex (GTP-b 100.0 1.5E-33 5.1E-38 239.4 34.4 254 42-320 45-302 (340)
71 3v7d_B Cell division control p 100.0 2.7E-33 9.1E-38 247.7 36.7 279 4-318 156-462 (464)
72 1pgu_A Actin interacting prote 100.0 8E-34 2.7E-38 259.2 34.3 286 5-319 13-328 (615)
73 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-33 4.3E-38 240.3 32.1 267 43-320 6-284 (345)
74 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6E-33 2.1E-37 244.2 37.5 279 3-322 111-394 (445)
75 3mmy_A MRNA export factor; mRN 100.0 1.1E-33 3.7E-38 242.0 31.4 285 4-317 33-344 (368)
76 3frx_A Guanine nucleotide-bind 100.0 1.6E-33 5.5E-38 237.1 31.9 233 4-253 59-307 (319)
77 3iz6_a 40S ribosomal protein R 100.0 5.1E-34 1.8E-38 245.9 26.9 278 31-320 45-330 (380)
78 2hes_X YDR267CP; beta-propelle 100.0 5.8E-33 2E-37 234.8 32.1 267 41-320 3-281 (330)
79 1erj_A Transcriptional repress 100.0 7.7E-33 2.6E-37 239.6 32.6 221 11-243 124-363 (393)
80 3mkq_A Coatomer beta'-subunit; 100.0 1E-32 3.4E-37 260.1 35.6 301 4-319 49-386 (814)
81 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.6E-33 2.6E-37 243.9 31.8 285 10-320 4-392 (450)
82 4gq1_A NUP37; propeller, trans 100.0 2.3E-34 7.8E-39 249.2 20.8 237 10-311 89-382 (393)
83 2xzm_R RACK1; ribosome, transl 100.0 1.4E-32 4.8E-37 233.7 31.4 231 4-253 70-330 (343)
84 4ery_A WD repeat-containing pr 100.0 1.1E-31 3.6E-36 225.2 34.6 252 43-322 14-271 (312)
85 3vu4_A KMHSV2; beta-propeller 100.0 7.3E-32 2.5E-36 230.3 32.5 293 5-320 14-337 (355)
86 2aq5_A Coronin-1A; WD40 repeat 100.0 5.1E-32 1.7E-36 235.2 28.6 250 13-321 37-301 (402)
87 2pm7_B Protein transport prote 100.0 4.7E-32 1.6E-36 225.8 27.2 211 46-320 3-239 (297)
88 3lrv_A PRE-mRNA-splicing facto 100.0 7.9E-33 2.7E-37 235.2 21.2 241 18-320 44-293 (343)
89 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-32 3.6E-37 241.2 20.8 264 7-318 12-296 (588)
90 2w18_A PALB2, fancn, partner a 100.0 2.4E-31 8.2E-36 219.2 25.3 258 14-317 43-355 (356)
91 2j04_A TAU60, YPL007P, hypothe 100.0 3.4E-32 1.1E-36 238.0 21.0 243 8-308 83-350 (588)
92 3gre_A Serine/threonine-protei 100.0 2.3E-31 7.8E-36 233.5 25.7 288 17-321 34-361 (437)
93 3dm0_A Maltose-binding peripla 100.0 1.7E-30 6E-35 240.7 32.3 233 4-253 424-683 (694)
94 3bws_A Protein LP49; two-domai 100.0 8.5E-30 2.9E-34 223.1 33.8 292 11-319 123-432 (433)
95 4h5i_A Guanine nucleotide-exch 100.0 5.2E-31 1.8E-35 225.8 24.1 207 8-222 131-343 (365)
96 3bg1_A Protein SEC13 homolog; 100.0 7.5E-31 2.6E-35 220.5 24.4 202 4-254 51-284 (316)
97 4e54_B DNA damage-binding prot 100.0 2.3E-31 8E-36 233.4 21.7 213 46-320 113-328 (435)
98 3ei3_B DNA damage-binding prot 100.0 4.7E-30 1.6E-34 221.3 29.0 264 38-321 59-341 (383)
99 4aow_A Guanine nucleotide-bind 100.0 3.4E-30 1.2E-34 218.2 26.3 218 41-321 27-248 (340)
100 1sq9_A Antiviral protein SKI8; 100.0 5.2E-30 1.8E-34 221.8 27.8 231 3-245 55-367 (397)
101 3i2n_A WD repeat-containing pr 100.0 1.4E-29 4.6E-34 215.8 28.7 249 46-319 12-291 (357)
102 3lrv_A PRE-mRNA-splicing facto 100.0 5E-30 1.7E-34 218.0 25.2 240 11-324 77-338 (343)
103 3dwl_C Actin-related protein 2 100.0 5.2E-31 1.8E-35 226.7 19.2 247 49-318 8-280 (377)
104 1l0q_A Surface layer protein; 100.0 1.4E-28 4.9E-33 212.5 34.1 269 23-320 3-276 (391)
105 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-29 7.2E-34 216.0 28.1 248 48-319 4-274 (372)
106 3dw8_B Serine/threonine-protei 100.0 3.6E-29 1.2E-33 219.9 30.1 255 50-320 26-374 (447)
107 3k26_A Polycomb protein EED; W 100.0 1.6E-29 5.6E-34 216.0 25.5 258 48-320 14-319 (366)
108 1yfq_A Cell cycle arrest prote 100.0 5E-29 1.7E-33 211.2 27.7 248 47-321 6-284 (342)
109 4gga_A P55CDC, cell division c 100.0 1.9E-28 6.4E-33 214.0 30.5 235 6-253 143-385 (420)
110 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-28 3.9E-33 206.3 27.9 245 43-321 9-257 (313)
111 3jrp_A Fusion protein of prote 100.0 6.4E-29 2.2E-33 213.3 26.8 218 42-320 1-241 (379)
112 3mmy_A MRNA export factor; mRN 100.0 1.7E-28 6E-33 209.6 27.9 238 4-254 80-337 (368)
113 4aez_A CDC20, WD repeat-contai 100.0 6E-28 2.1E-32 209.5 31.4 230 8-254 132-371 (401)
114 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-28 4.2E-33 208.7 24.7 216 4-229 51-344 (351)
115 3zwl_B Eukaryotic translation 100.0 2.4E-27 8.3E-32 202.6 32.8 236 4-254 68-337 (369)
116 1l0q_A Surface layer protein; 100.0 7.4E-27 2.5E-31 201.7 35.3 242 6-266 28-276 (391)
117 3jro_A Fusion protein of prote 100.0 1.4E-28 4.6E-33 229.6 21.5 202 4-255 47-277 (753)
118 4gq1_A NUP37; propeller, trans 100.0 6.4E-29 2.2E-33 215.0 17.7 216 5-251 131-378 (393)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-26 3.5E-31 204.8 30.5 232 7-251 99-372 (450)
120 2xyi_A Probable histone-bindin 100.0 2E-27 6.9E-32 208.0 25.3 220 46-319 122-353 (430)
121 1p22_A F-BOX/WD-repeat protein 100.0 1E-26 3.4E-31 204.0 28.8 225 4-255 167-405 (435)
122 4a11_B DNA excision repair pro 100.0 8.3E-27 2.8E-31 202.1 27.5 287 8-318 97-404 (408)
123 3vu4_A KMHSV2; beta-propeller 100.0 3E-26 1E-30 195.5 28.7 248 36-320 3-272 (355)
124 2w18_A PALB2, fancn, partner a 100.0 6E-27 2E-31 193.1 22.1 198 12-220 113-355 (356)
125 3bws_A Protein LP49; two-domai 100.0 5.7E-25 1.9E-29 192.5 32.0 282 9-320 59-391 (433)
126 4ggc_A P55CDC, cell division c 99.9 6.6E-25 2.3E-29 183.9 29.8 234 6-252 63-304 (318)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.4E-25 1.5E-29 192.1 24.4 245 5-320 112-388 (415)
128 1nir_A Nitrite reductase; hemo 99.9 5.1E-24 1.7E-28 191.1 29.2 286 17-320 144-459 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-23 5.3E-28 182.4 30.0 228 3-301 171-410 (415)
130 1nir_A Nitrite reductase; hemo 99.9 5.6E-23 1.9E-27 184.3 33.3 293 13-319 181-514 (543)
131 3u4y_A Uncharacterized protein 99.9 6.7E-23 2.3E-27 172.9 31.8 292 16-321 3-306 (331)
132 2ecf_A Dipeptidyl peptidase IV 99.9 4.8E-24 1.6E-28 199.0 26.5 281 10-319 36-413 (741)
133 1ri6_A Putative isomerase YBHE 99.9 2.4E-23 8.1E-28 176.2 27.3 253 7-320 34-309 (343)
134 1xfd_A DIP, dipeptidyl aminope 99.9 8.4E-24 2.9E-28 196.8 25.6 289 12-320 18-394 (723)
135 3hfq_A Uncharacterized protein 99.9 1.4E-22 4.9E-27 172.1 27.3 263 6-320 35-318 (347)
136 3vgz_A Uncharacterized protein 99.9 1.1E-21 3.6E-26 166.8 32.2 275 9-309 39-334 (353)
137 2ojh_A Uncharacterized protein 99.9 9.9E-23 3.4E-27 168.4 23.6 245 4-310 35-293 (297)
138 2oit_A Nucleoporin 214KDA; NH2 99.9 8.7E-23 3E-27 178.3 20.7 195 10-250 36-258 (434)
139 2z3z_A Dipeptidyl aminopeptida 99.9 9.3E-21 3.2E-25 175.9 29.7 289 11-320 82-436 (706)
140 3o4h_A Acylamino-acid-releasin 99.9 1.8E-21 6E-26 176.8 24.1 270 10-320 21-314 (582)
141 1k32_A Tricorn protease; prote 99.9 5.3E-21 1.8E-25 184.7 28.8 296 3-320 45-462 (1045)
142 1k32_A Tricorn protease; prote 99.9 1.2E-20 4.2E-25 182.2 28.0 286 5-317 198-500 (1045)
143 2ecf_A Dipeptidyl peptidase IV 99.9 1E-20 3.6E-25 176.5 26.5 282 12-318 110-458 (741)
144 2oit_A Nucleoporin 214KDA; NH2 99.9 3.1E-20 1.1E-24 162.2 27.4 163 8-223 90-279 (434)
145 2ojh_A Uncharacterized protein 99.9 1E-20 3.6E-25 156.2 23.0 222 27-320 17-259 (297)
146 3scy_A Hypothetical bacterial 99.9 1.2E-19 4.2E-24 154.9 30.2 262 9-321 48-339 (361)
147 2z3z_A Dipeptidyl aminopeptida 99.9 2.1E-20 7.2E-25 173.5 27.3 280 13-319 28-389 (706)
148 1jmx_B Amine dehydrogenase; ox 99.9 1.5E-20 5.2E-25 159.3 24.2 239 15-320 4-326 (349)
149 1ri6_A Putative isomerase YBHE 99.9 2.7E-20 9.1E-25 157.4 25.4 233 24-319 7-262 (343)
150 1pby_B Quinohemoprotein amine 99.9 9.9E-20 3.4E-24 153.5 27.9 268 23-321 2-312 (337)
151 3u4y_A Uncharacterized protein 99.9 2.9E-19 9.8E-24 150.6 28.1 236 7-254 37-294 (331)
152 1z68_A Fibroblast activation p 99.9 6.5E-21 2.2E-25 177.3 18.9 280 14-319 19-391 (719)
153 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-19 4.2E-24 168.8 26.5 282 5-306 52-427 (723)
154 3pe7_A Oligogalacturonate lyas 99.9 2.4E-19 8.1E-24 154.4 25.3 302 4-321 24-384 (388)
155 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.8E-19 1.6E-23 151.5 23.9 254 10-322 39-344 (365)
156 3vgz_A Uncharacterized protein 99.8 6.7E-18 2.3E-22 143.3 30.6 226 11-252 89-333 (353)
157 1pby_B Quinohemoprotein amine 99.8 1.7E-18 5.8E-23 145.9 24.6 223 12-252 35-299 (337)
158 4a5s_A Dipeptidyl peptidase 4 99.8 5.8E-19 2E-23 164.6 20.5 240 12-319 18-351 (740)
159 1q7f_A NHL, brain tumor CG1071 99.8 9.3E-17 3.2E-21 132.4 29.3 242 8-320 27-281 (286)
160 3fvz_A Peptidyl-glycine alpha- 99.8 1.3E-16 4.4E-21 134.4 29.8 258 10-319 23-322 (329)
161 3hfq_A Uncharacterized protein 99.8 2.4E-17 8.1E-22 139.8 25.2 232 30-320 14-272 (347)
162 3o4h_A Acylamino-acid-releasin 99.8 2.3E-18 7.8E-23 156.4 18.9 238 52-317 21-274 (582)
163 3c5m_A Oligogalacturonate lyas 99.8 1.1E-17 3.7E-22 144.3 21.1 290 13-321 38-384 (396)
164 1z68_A Fibroblast activation p 99.8 1.1E-17 3.9E-22 155.5 20.5 287 12-318 61-442 (719)
165 3scy_A Hypothetical bacterial 99.8 5.8E-16 2E-20 132.0 28.2 238 22-319 13-291 (361)
166 3azo_A Aminopeptidase; POP fam 99.8 1.4E-16 4.8E-21 146.8 24.1 252 5-320 18-324 (662)
167 3e5z_A Putative gluconolactona 99.8 1.2E-15 4.2E-20 126.4 26.5 244 3-322 20-287 (296)
168 1jmx_B Amine dehydrogenase; ox 99.7 6.5E-16 2.2E-20 130.7 23.6 212 12-230 44-333 (349)
169 2oiz_A Aromatic amine dehydrog 99.7 2.7E-15 9.2E-20 127.9 24.5 258 15-301 54-360 (361)
170 1jof_A Carboxy-CIS,CIS-muconat 99.7 5.3E-15 1.8E-19 126.4 25.3 230 32-319 14-291 (365)
171 3azo_A Aminopeptidase; POP fam 99.7 1.4E-15 4.8E-20 140.1 22.5 235 15-319 81-367 (662)
172 4a5s_A Dipeptidyl peptidase 4 99.7 8.3E-16 2.8E-20 143.4 19.9 248 15-320 66-399 (740)
173 2dg1_A DRP35, lactonase; beta 99.7 4.6E-14 1.6E-18 118.8 28.9 250 6-319 40-314 (333)
174 3no2_A Uncharacterized protein 99.7 2.5E-14 8.5E-19 117.1 25.8 222 20-306 3-230 (276)
175 1rwi_B Serine/threonine-protei 99.7 3E-14 1E-18 116.2 26.1 242 12-323 25-268 (270)
176 2xdw_A Prolyl endopeptidase; a 99.7 1.4E-14 4.8E-19 134.5 25.2 246 9-319 123-414 (710)
177 2dg1_A DRP35, lactonase; beta 99.7 3.4E-14 1.1E-18 119.7 24.4 246 11-318 6-262 (333)
178 3pe7_A Oligogalacturonate lyas 99.7 4.2E-15 1.4E-19 127.8 18.2 240 6-252 76-370 (388)
179 2oiz_A Aromatic amine dehydrog 99.6 1.8E-13 6.1E-18 116.6 26.4 281 20-320 13-335 (361)
180 2gop_A Trilobed protease; beta 99.6 6.3E-14 2.1E-18 118.6 23.5 227 11-318 15-290 (347)
181 2bkl_A Prolyl endopeptidase; m 99.6 1.8E-14 6.2E-19 133.4 21.5 243 8-319 118-397 (695)
182 3dsm_A Uncharacterized protein 99.6 9.3E-13 3.2E-17 110.7 27.7 239 12-318 45-301 (328)
183 1qks_A Cytochrome CD1 nitrite 99.6 5.9E-12 2E-16 112.9 33.2 290 12-316 198-535 (567)
184 2gop_A Trilobed protease; beta 99.6 8E-13 2.7E-17 111.8 26.1 210 11-242 59-311 (347)
185 2z2n_A Virginiamycin B lyase; 99.6 6.9E-11 2.3E-15 97.4 34.9 273 6-313 10-290 (299)
186 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 5.8E-12 2E-16 104.8 28.4 246 5-319 12-299 (314)
187 3c5m_A Oligogalacturonate lyas 99.6 8.9E-14 3.1E-18 119.7 17.7 225 15-252 85-370 (396)
188 2bkl_A Prolyl endopeptidase; m 99.6 6.3E-13 2.2E-17 123.1 23.7 236 19-319 76-349 (695)
189 2xdw_A Prolyl endopeptidase; a 99.6 6.5E-13 2.2E-17 123.3 23.2 237 20-319 81-366 (710)
190 3fvz_A Peptidyl-glycine alpha- 99.5 3.2E-12 1.1E-16 107.5 23.0 197 9-250 89-308 (329)
191 1yr2_A Prolyl oligopeptidase; 99.5 1.9E-12 6.3E-17 120.8 23.3 243 9-319 161-441 (741)
192 1qks_A Cytochrome CD1 nitrite 99.5 3E-11 1E-15 108.3 28.6 283 19-319 164-477 (567)
193 3no2_A Uncharacterized protein 99.5 2.9E-11 1E-15 98.8 25.6 184 11-249 37-229 (276)
194 1q7f_A NHL, brain tumor CG1071 99.5 2.4E-11 8.3E-16 99.8 24.7 185 9-248 75-266 (286)
195 1xip_A Nucleoporin NUP159; bet 99.5 2.1E-12 7E-17 109.7 16.6 170 12-249 39-230 (388)
196 3hrp_A Uncharacterized protein 99.5 2.1E-10 7.1E-15 99.2 29.3 254 11-318 131-409 (409)
197 2qc5_A Streptogramin B lactona 99.5 2.4E-09 8.3E-14 88.1 34.6 274 9-319 18-298 (300)
198 3dsm_A Uncharacterized protein 99.5 1.3E-10 4.5E-15 97.5 26.7 219 10-240 83-319 (328)
199 3g4e_A Regucalcin; six bladed 99.4 6.1E-10 2.1E-14 92.1 29.2 236 7-252 9-261 (297)
200 3e5z_A Putative gluconolactona 99.4 5.6E-11 1.9E-15 98.2 22.9 189 5-252 63-276 (296)
201 3dr2_A Exported gluconolactona 99.4 2.4E-10 8.3E-15 94.9 26.4 237 3-314 37-302 (305)
202 1yr2_A Prolyl oligopeptidase; 99.4 2.9E-11 1E-15 112.7 22.4 235 19-319 115-393 (741)
203 2mad_H Methylamine dehydrogena 99.4 3.5E-09 1.2E-13 90.2 33.1 282 17-320 27-351 (373)
204 3iuj_A Prolyl endopeptidase; h 99.4 9.9E-11 3.4E-15 108.3 22.9 241 8-318 126-404 (693)
205 2qe8_A Uncharacterized protein 99.4 6.2E-10 2.1E-14 94.0 25.7 246 10-316 16-318 (343)
206 1xip_A Nucleoporin NUP159; bet 99.3 6.1E-11 2.1E-15 100.7 16.9 142 3-208 81-230 (388)
207 3sjl_D Methylamine dehydrogena 99.3 1.6E-09 5.4E-14 91.7 24.0 234 15-266 82-364 (386)
208 1rwi_B Serine/threonine-protei 99.3 8E-10 2.7E-14 89.8 21.7 182 11-250 67-250 (270)
209 3sjl_D Methylamine dehydrogena 99.3 8.4E-09 2.9E-13 87.3 28.2 284 16-319 38-363 (386)
210 2mad_H Methylamine dehydrogena 99.3 8.9E-09 3.1E-13 87.8 28.1 220 15-251 70-337 (373)
211 2ghs_A AGR_C_1268P; regucalcin 99.3 1.6E-08 5.6E-13 84.6 27.5 227 13-252 51-291 (326)
212 2z2n_A Virginiamycin B lyase; 99.2 1.3E-07 4.5E-12 77.6 31.8 239 49-318 11-254 (299)
213 3c75_H MADH, methylamine dehyd 99.2 1E-08 3.5E-13 88.2 22.5 233 15-265 122-402 (426)
214 3c75_H MADH, methylamine dehyd 99.2 9E-08 3.1E-12 82.4 27.7 281 20-320 82-403 (426)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.4E-08 4.9E-13 84.2 22.2 204 9-222 69-299 (314)
216 1mda_H Methylamine dehydrogena 99.1 6.4E-09 2.2E-13 88.0 19.8 221 15-242 69-366 (368)
217 2hz6_A Endoplasmic reticulum t 99.1 1.8E-10 6.2E-15 98.2 8.4 201 21-244 8-215 (369)
218 3hrp_A Uncharacterized protein 99.1 6.1E-08 2.1E-12 83.7 24.1 209 54-319 132-354 (409)
219 2iwa_A Glutamine cyclotransfer 99.1 2.2E-07 7.7E-12 74.5 24.0 187 12-255 22-228 (266)
220 2qc5_A Streptogramin B lactona 99.1 2.6E-06 8.9E-11 69.7 31.4 236 51-319 18-260 (300)
221 3iuj_A Prolyl endopeptidase; h 99.1 8.5E-09 2.9E-13 95.4 17.9 203 50-318 126-358 (693)
222 3g4e_A Regucalcin; six bladed 99.0 7.5E-07 2.6E-11 73.4 27.5 224 52-307 12-260 (297)
223 3nok_A Glutaminyl cyclase; bet 99.0 2.4E-07 8E-12 73.6 22.9 181 12-253 56-255 (268)
224 2ece_A 462AA long hypothetical 99.0 6.4E-07 2.2E-11 76.6 26.9 231 20-307 93-399 (462)
225 3nol_A Glutamine cyclotransfer 99.0 2.2E-07 7.5E-12 73.7 22.2 184 12-253 44-245 (262)
226 3dr2_A Exported gluconolactona 99.0 6.3E-08 2.1E-12 80.2 20.0 189 5-252 80-296 (305)
227 1yiq_A Quinohemoprotein alcoho 99.0 5.2E-07 1.8E-11 83.1 27.1 199 22-229 70-345 (689)
228 1kb0_A Quinohemoprotein alcoho 99.0 3.1E-07 1.1E-11 84.4 24.8 200 22-230 77-354 (677)
229 2qe8_A Uncharacterized protein 98.9 2.7E-07 9.2E-12 77.8 21.6 217 8-250 64-308 (343)
230 1mda_H Methylamine dehydrogena 98.9 6.4E-07 2.2E-11 75.7 23.1 215 33-252 47-333 (368)
231 2ghs_A AGR_C_1268P; regucalcin 98.9 2.6E-06 8.9E-11 71.2 26.4 198 55-318 51-259 (326)
232 1kb0_A Quinohemoprotein alcoho 98.9 6.8E-07 2.3E-11 82.2 23.7 237 21-267 127-509 (677)
233 3mbr_X Glutamine cyclotransfer 98.9 1.8E-06 6.1E-11 67.9 21.7 184 11-253 21-224 (243)
234 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.5E-05 8.4E-10 66.5 29.1 265 21-319 52-337 (376)
235 2ece_A 462AA long hypothetical 98.8 5.4E-06 1.8E-10 71.0 23.6 164 152-318 143-351 (462)
236 3hxj_A Pyrrolo-quinoline quino 98.8 2.2E-06 7.6E-11 71.4 20.8 265 13-323 62-328 (330)
237 2hz6_A Endoplasmic reticulum t 98.7 1.2E-08 4.3E-13 86.8 5.3 181 63-319 8-192 (369)
238 3q7m_A Lipoprotein YFGL, BAMB; 98.7 1.2E-05 4.1E-10 68.4 23.6 189 21-230 102-304 (376)
239 1fwx_A Nitrous oxide reductase 98.7 1.2E-06 4E-11 77.6 16.7 215 20-254 99-351 (595)
240 2fp8_A Strictosidine synthase; 98.7 4.2E-05 1.4E-09 63.6 25.7 250 6-321 14-315 (322)
241 1yiq_A Quinohemoprotein alcoho 98.7 1.8E-06 6.3E-11 79.5 18.6 217 14-249 238-534 (689)
242 1fwx_A Nitrous oxide reductase 98.6 9.3E-06 3.2E-10 72.0 21.9 102 214-319 255-361 (595)
243 2iwa_A Glutamine cyclotransfer 98.6 1.6E-05 5.6E-10 63.7 20.5 208 44-319 11-237 (266)
244 1npe_A Nidogen, entactin; glyc 98.5 0.00013 4.3E-09 58.9 24.9 220 11-244 36-262 (267)
245 3nol_A Glutamine cyclotransfer 98.5 5.1E-05 1.8E-09 60.2 21.4 201 44-307 33-243 (262)
246 1kv9_A Type II quinohemoprotei 98.5 0.00027 9.1E-09 65.0 27.2 205 22-229 66-340 (668)
247 3hxj_A Pyrrolo-quinoline quino 98.4 1.2E-05 4E-10 66.9 16.0 201 16-245 25-227 (330)
248 1k3i_A Galactose oxidase precu 98.4 0.00013 4.4E-09 67.0 22.8 71 15-85 190-276 (656)
249 3mbr_X Glutamine cyclotransfer 98.3 0.00065 2.2E-08 53.4 22.0 190 54-306 22-222 (243)
250 2ad6_A Methanol dehydrogenase 98.3 0.0011 3.8E-08 59.6 26.3 70 22-93 62-144 (571)
251 3nok_A Glutaminyl cyclase; bet 98.3 0.00013 4.3E-09 58.0 17.2 200 43-306 44-253 (268)
252 1w6s_A Methanol dehydrogenase 98.2 0.0035 1.2E-07 56.6 27.8 201 22-230 62-350 (599)
253 2p4o_A Hypothetical protein; p 98.2 0.0018 6.3E-08 53.2 29.0 74 11-86 32-107 (306)
254 2ad6_A Methanol dehydrogenase 98.1 0.0017 5.8E-08 58.4 24.7 70 22-93 115-195 (571)
255 1kv9_A Type II quinohemoprotei 98.1 0.00026 8.9E-09 65.0 18.6 195 14-232 233-498 (668)
256 2fp8_A Strictosidine synthase; 98.1 0.002 6.7E-08 53.4 22.4 163 55-251 21-203 (322)
257 1k3i_A Galactose oxidase precu 98.0 0.0012 4.1E-08 60.6 21.5 74 12-85 244-325 (656)
258 4a2l_A BT_4663, two-component 98.0 0.01 3.5E-07 55.7 34.9 281 10-317 214-524 (795)
259 1w6s_A Methanol dehydrogenase 98.0 0.0053 1.8E-07 55.4 24.1 67 25-93 124-201 (599)
260 2xe4_A Oligopeptidase B; hydro 97.9 0.0023 8E-08 59.6 22.3 97 12-110 175-287 (751)
261 1npe_A Nidogen, entactin; glyc 97.9 0.0047 1.6E-07 49.5 27.4 210 24-250 3-224 (267)
262 1flg_A Protein (quinoprotein e 97.9 0.011 3.8E-07 53.2 27.9 62 168-231 291-364 (582)
263 1flg_A Protein (quinoprotein e 97.8 0.0014 4.8E-08 59.1 18.1 77 166-246 464-542 (582)
264 2xe4_A Oligopeptidase B; hydro 97.8 0.00063 2.2E-08 63.4 16.1 99 148-251 175-289 (751)
265 2p9w_A MAL S 1 allergenic prot 97.8 0.0041 1.4E-07 51.1 18.0 179 4-223 6-216 (334)
266 4hw6_A Hypothetical protein, I 97.7 0.02 6.9E-07 49.5 25.8 160 11-221 139-303 (433)
267 4a2l_A BT_4663, two-component 97.6 0.045 1.5E-06 51.3 36.1 266 11-307 263-561 (795)
268 3qqz_A Putative uncharacterize 97.6 0.019 6.5E-07 45.6 24.0 197 8-249 24-240 (255)
269 2p4o_A Hypothetical protein; p 97.6 0.024 8.1E-07 46.4 21.8 195 11-252 72-277 (306)
270 3v9f_A Two-component system se 97.5 0.057 1.9E-06 50.5 33.0 278 11-310 211-516 (781)
271 2p9w_A MAL S 1 allergenic prot 97.5 0.028 9.6E-07 46.2 19.3 162 148-318 14-214 (334)
272 3tc9_A Hypothetical hydrolase; 97.4 0.011 3.6E-07 51.2 16.9 155 148-319 138-301 (430)
273 3tc9_A Hypothetical hydrolase; 97.4 0.053 1.8E-06 46.8 28.0 156 12-221 138-300 (430)
274 2xbg_A YCF48-like protein; pho 97.4 0.044 1.5E-06 45.4 32.3 272 11-319 36-320 (327)
275 3kya_A Putative phosphatase; s 97.2 0.035 1.2E-06 48.6 17.6 167 148-320 140-342 (496)
276 3v9f_A Two-component system se 97.2 0.16 5.4E-06 47.5 33.3 276 11-316 258-565 (781)
277 3qqz_A Putative uncharacterize 97.1 0.077 2.6E-06 42.1 24.4 213 47-319 21-251 (255)
278 1n7d_A LDL receptor, low-densi 97.0 0.023 7.8E-07 52.5 15.8 207 12-230 407-622 (699)
279 3amr_A 3-phytase; beta-propell 97.0 0.11 3.6E-06 43.2 21.6 190 20-263 38-261 (355)
280 3p5b_L Low density lipoprotein 96.9 0.17 5.9E-06 43.1 28.7 210 9-230 110-328 (400)
281 3v65_B Low-density lipoprotein 96.8 0.19 6.5E-06 42.6 24.8 206 11-230 116-326 (386)
282 1ijq_A LDL receptor, low-densi 96.8 0.16 5.5E-06 41.7 27.7 207 11-230 30-246 (316)
283 4hw6_A Hypothetical protein, I 96.8 0.23 7.9E-06 42.9 20.0 202 9-220 180-431 (433)
284 3v65_B Low-density lipoprotein 96.6 0.26 8.7E-06 41.8 27.5 179 14-251 80-264 (386)
285 3amr_A 3-phytase; beta-propell 96.5 0.29 1E-05 40.6 21.7 147 162-318 91-262 (355)
286 3v64_C Agrin; beta propeller, 96.4 0.32 1.1E-05 40.6 27.9 181 12-251 35-221 (349)
287 3m0c_C LDL receptor, low-densi 96.3 0.68 2.3E-05 43.3 25.9 208 10-229 423-639 (791)
288 3v64_C Agrin; beta propeller, 96.3 0.38 1.3E-05 40.1 24.9 205 11-230 73-283 (349)
289 3kya_A Putative phosphatase; s 96.3 0.53 1.8E-05 41.2 26.5 160 12-220 140-339 (496)
290 2xbg_A YCF48-like protein; pho 96.2 0.41 1.4E-05 39.5 24.1 193 11-220 122-320 (327)
291 2ism_A Putative oxidoreductase 95.8 0.6 2.1E-05 39.0 15.7 101 147-251 31-152 (352)
292 3ei3_A DNA damage-binding prot 95.6 1.8 6.3E-05 42.3 28.1 76 10-86 553-641 (1158)
293 3sre_A PON1, serum paraoxonase 95.5 0.93 3.2E-05 37.8 17.6 178 139-320 42-253 (355)
294 3p5b_L Low density lipoprotein 95.4 1.1 3.7E-05 38.1 28.3 99 149-251 161-264 (400)
295 3sov_A LRP-6, low-density lipo 95.3 0.98 3.4E-05 37.0 23.3 205 12-230 36-246 (318)
296 2vpj_A Kelch-like protein 12; 95.2 0.95 3.3E-05 36.5 22.7 65 157-224 159-233 (301)
297 1n7d_A LDL receptor, low-densi 95.2 0.61 2.1E-05 43.0 14.8 157 147-318 406-570 (699)
298 3pbp_A Nucleoporin NUP82; beta 95.0 0.61 2.1E-05 39.8 12.9 114 201-320 30-159 (452)
299 3a9g_A Putative uncharacterize 94.9 1.4 4.9E-05 36.7 16.3 102 146-249 28-151 (354)
300 3sov_A LRP-6, low-density lipo 94.7 1.5 5.2E-05 35.9 20.0 157 148-319 36-197 (318)
301 3a9g_A Putative uncharacterize 94.6 1.7 5.7E-05 36.3 25.8 59 10-70 28-93 (354)
302 1ijq_A LDL receptor, low-densi 94.5 1.7 5.7E-05 35.5 29.1 164 32-251 10-182 (316)
303 3sre_A PON1, serum paraoxonase 94.3 2 6.7E-05 35.9 22.5 56 193-248 222-282 (355)
304 3m0c_C LDL receptor, low-densi 94.3 3.4 0.00012 38.6 28.1 99 149-251 473-576 (791)
305 3s94_A LRP-6, low-density lipo 93.6 4.1 0.00014 36.9 23.1 205 10-228 39-249 (619)
306 1tl2_A L10, protein (tachylect 93.5 2 6.8E-05 33.1 13.2 66 11-81 41-114 (236)
307 2vpj_A Kelch-like protein 12; 93.5 2.5 8.4E-05 34.0 20.6 64 20-85 61-139 (301)
308 3ii7_A Kelch-like protein 7; p 93.4 2.6 8.9E-05 34.0 21.6 59 24-84 14-80 (306)
309 2xn4_A Kelch-like protein 2; s 93.3 2.7 9.1E-05 33.8 22.1 65 157-224 155-231 (302)
310 3ii7_A Kelch-like protein 7; p 93.2 2.7 9.3E-05 33.8 18.8 64 20-85 54-129 (306)
311 3das_A Putative oxidoreductase 92.9 2.5 8.5E-05 35.1 12.8 57 193-249 33-99 (347)
312 2ism_A Putative oxidoreductase 92.3 4.3 0.00015 33.7 28.7 72 10-84 30-115 (352)
313 3das_A Putative oxidoreductase 92.2 4.4 0.00015 33.7 17.3 110 141-250 26-157 (347)
314 1zgk_A Kelch-like ECH-associat 92.2 3.8 0.00013 33.0 21.3 65 157-224 168-242 (308)
315 2g8s_A Glucose/sorbosone dehyd 92.1 4.5 0.00015 33.6 14.8 102 147-251 18-147 (353)
316 1cru_A Protein (soluble quinop 91.9 5.7 0.00019 34.4 15.3 58 193-250 28-97 (454)
317 3pbp_A Nucleoporin NUP82; beta 91.6 5.9 0.0002 33.9 19.8 73 146-218 124-208 (452)
318 4a0p_A LRP6, LRP-6, low-densit 90.8 9.2 0.00032 34.7 25.9 201 11-227 37-242 (628)
319 2xn4_A Kelch-like protein 2; s 89.0 7.6 0.00026 31.1 19.3 63 21-85 61-135 (302)
320 2uvk_A YJHT; unknown function, 89.0 8.7 0.0003 31.6 14.9 52 21-73 65-128 (357)
321 1tl2_A L10, protein (tachylect 88.7 3.6 0.00012 31.7 9.0 107 193-312 42-156 (236)
322 3ei3_A DNA damage-binding prot 88.5 20 0.00069 35.2 27.6 32 288-319 553-591 (1158)
323 1zgk_A Kelch-like ECH-associat 87.0 11 0.00036 30.4 17.4 63 21-85 70-148 (308)
324 1xi4_A Clathrin heavy chain; a 85.1 34 0.0012 34.5 18.7 129 32-178 48-189 (1630)
325 2xzh_A Clathrin heavy chain 1; 84.0 17 0.00057 30.0 27.9 169 32-222 49-236 (365)
326 2wg3_C Hedgehog-interacting pr 83.1 17 0.0006 31.4 11.8 29 193-221 15-44 (463)
327 2be1_A Serine/threonine-protei 81.7 8.3 0.00029 31.8 8.8 31 202-232 110-140 (339)
328 4gq2_M Nucleoporin NUP120; bet 80.2 12 0.00041 35.9 10.5 38 193-230 237-274 (950)
329 4gq2_M Nucleoporin NUP120; bet 80.2 7.7 0.00026 37.2 9.1 37 148-184 237-273 (950)
330 4asc_A Kelch repeat and BTB do 79.6 22 0.00076 28.5 19.6 24 157-180 196-224 (315)
331 1bpo_A Protein (clathrin); cla 79.1 30 0.001 29.8 28.7 170 31-222 47-235 (494)
332 3sbq_A Nitrous-oxide reductase 79.1 23 0.0008 31.5 10.8 73 150-222 326-408 (638)
333 2zwa_A Leucine carboxyl methyl 78.7 40 0.0014 30.9 17.8 65 20-84 396-478 (695)
334 4a0p_A LRP6, LRP-6, low-densit 77.2 42 0.0014 30.4 26.9 205 11-229 340-556 (628)
335 4fhn_B Nucleoporin NUP120; pro 73.0 3.6 0.00012 40.3 4.9 38 193-230 239-276 (1139)
336 3zwu_A Alkaline phosphatase PH 72.0 15 0.00051 33.0 8.1 58 13-70 478-548 (592)
337 4asc_A Kelch repeat and BTB do 71.8 37 0.0013 27.2 22.4 66 156-224 147-223 (315)
338 3f7f_A Nucleoporin NUP120; nuc 71.3 8.3 0.00029 35.3 6.4 36 194-231 224-259 (729)
339 3s94_A LRP-6, low-density lipo 70.3 62 0.0021 29.2 31.7 74 11-84 84-160 (619)
340 3f7f_A Nucleoporin NUP120; nuc 67.3 7.3 0.00025 35.7 5.1 36 12-49 223-258 (729)
341 4fhn_B Nucleoporin NUP120; pro 65.0 4.5 0.00015 39.6 3.7 36 13-48 240-275 (1139)
342 4a9v_A PHOX; hydrolase, beta-p 64.4 38 0.0013 30.3 8.9 60 11-70 476-548 (592)
343 2be1_A Serine/threonine-protei 61.9 64 0.0022 26.5 9.5 69 159-229 11-83 (339)
344 2g8s_A Glucose/sorbosone dehyd 60.6 69 0.0024 26.3 27.9 58 11-70 18-86 (353)
345 1xi4_A Clathrin heavy chain; a 58.3 1.6E+02 0.0056 29.9 16.2 204 15-229 70-296 (1630)
346 3s25_A Hypothetical 7-bladed b 57.9 72 0.0025 25.6 12.2 86 154-251 60-163 (302)
347 2woz_A Kelch repeat and BTB do 57.1 73 0.0025 25.4 22.5 66 156-224 157-233 (318)
348 1cru_A Protein (soluble quinop 56.9 94 0.0032 26.7 32.4 61 10-70 26-97 (454)
349 2xzh_A Clathrin heavy chain 1; 51.7 1E+02 0.0035 25.5 27.8 205 15-230 71-298 (365)
350 2woz_A Kelch repeat and BTB do 51.6 90 0.0031 24.8 18.7 66 18-85 53-138 (318)
351 1bpo_A Protein (clathrin); cla 47.2 1.4E+02 0.0048 25.8 27.3 205 15-230 70-297 (494)
352 3s25_A Hypothetical 7-bladed b 43.0 1.3E+02 0.0043 24.1 15.6 86 154-250 152-240 (302)
353 1q47_A Semaphorin 3A; beta pro 39.7 1.5E+02 0.0052 25.8 8.7 76 3-78 395-487 (495)
354 2zwa_A Leucine carboxyl methyl 38.4 2.3E+02 0.008 25.8 15.3 68 156-223 396-478 (695)
355 1ukf_A Avirulence protein AVRP 37.2 26 0.0009 25.7 3.0 31 289-321 119-150 (188)
356 3zwu_A Alkaline phosphatase PH 36.4 1.2E+02 0.004 27.3 7.6 58 150-209 479-548 (592)
357 4a9v_A PHOX; hydrolase, beta-p 35.1 2.2E+02 0.0075 25.5 8.9 60 192-251 476-549 (592)
358 4hvt_A Ritya.17583.B, post-pro 34.0 2.8E+02 0.0096 25.5 18.3 83 166-250 318-413 (711)
359 2uvk_A YJHT; unknown function, 31.9 2E+02 0.0069 23.1 19.1 64 21-85 19-97 (357)
360 1zso_A Hypothetical protein; s 28.2 1E+02 0.0035 22.2 4.8 35 291-325 112-147 (164)
361 2wg3_C Hedgehog-interacting pr 27.8 2.9E+02 0.01 23.7 14.6 104 148-251 15-157 (463)
362 3kvp_A Uncharacterized protein 25.8 61 0.0021 19.3 2.6 25 299-324 28-52 (72)
363 1olz_A Semaphorin 4D; developm 23.3 2.2E+02 0.0075 26.0 7.1 57 160-217 417-477 (663)
364 3oky_B Putative uncharacterize 22.9 1.9E+02 0.0066 25.7 6.5 77 2-78 393-495 (565)
365 3al9_A Plexin-A2; beta-propell 21.5 2.3E+02 0.0079 25.0 6.8 68 11-78 400-476 (539)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.4e-46 Score=317.32 Aligned_cols=284 Identities=19% Similarity=0.343 Sum_probs=240.3
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+++|.+.|.+++|+|++++|++|+.|++|++||..+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Cc----EEEEE-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461 84 GA----QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 84 ~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
++ ....+ .+...+.++.+.+++.++..+.+. .+.+|++. .+.....+.+|.+.|.+++|+|++
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~------~i~~wd~~------~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT------TCALWDIE------TGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTS------CEEEEETT------TTEEEEEECCCSSCEEEEEECTTS
T ss_pred CCCcceeEEEecCCCccEEEEEECCCCcEEEEECCC------cEEEEECC------CCcEEEEEcCCCCceEEEEECCCC
Confidence 53 22222 244566777788777766655543 34445442 346777889999999999999999
Q ss_pred cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---cce
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPV 235 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~ 235 (326)
+++++|+.|++|++||+++++....+ .+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+... ..+
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v 273 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEE---cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence 99999999999999999988776554 478899999999999999999999999999999998888777543 368
Q ss_pred EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
.+++|+|++..+++++.+. .+++|+......+..+.+|.++|.+++|+|||.+|||||.||+|+||
T Consensus 274 ~~~~~s~~g~~l~~g~~d~--------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDF--------------NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEEECTTSSEEEEEETTS--------------EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEECCCCCEEEEECCCC--------------eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 9999999998877765432 34566655556666788999999999999999999999999999999
Q ss_pred e
Q 020461 316 H 316 (326)
Q Consensus 316 ~ 316 (326)
+
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5e-46 Score=324.05 Aligned_cols=287 Identities=22% Similarity=0.304 Sum_probs=243.8
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|..+|++++|+|++++|++|+.|++|+|||+.+++...++.+|.+.|.+++|+|++++|++|+.|++|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
++.+..+. +...+.++.+.+++..++.+.. +..+.+|++. .+..+..+.+|...|.++.++|++.+|+
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~-----D~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~~~~g~~l~ 250 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASR-----DKTIKMWEVQ------TGYCVKTFTGHREWVRMVRPNQDGTLIA 250 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEET-----TSEEEEEETT------TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECC------CCcEEEEEeCCCccEEEEEECCCCCEEE
Confidence 88876664 4567788888887655544332 2345555543 3457778899999999999999999999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC--------------------CCeEEEEeCCCeEEEeecCC
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--------------------GSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--------------------~~~l~s~s~dg~i~iwd~~~ 222 (326)
+|+.|++|++||+++++....+ .+|...|.+++|+|+ +.+|++|+.|++|++||+++
T Consensus 251 s~s~D~~v~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 251 SCSNDQTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp EEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred EEcCCCeEEEEECCCCceeeEe---cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 9999999999999988766544 478899999999996 66899999999999999999
Q ss_pred cceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc
Q 020461 223 LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301 (326)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~ 301 (326)
++++..+. +...+.+++|+|++..+++++. |+ .+++|+....+.+..+.+|...|++++|+|++.
T Consensus 328 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~-------------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DK-------------TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393 (410)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEET-TT-------------EEEEECCTTSCCCEEEECCSSCEEEEEECSSSS
T ss_pred CceEEEEECCCCcEEEEEEcCCCCEEEEEeC-CC-------------eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCC
Confidence 99988876 4567999999999988776653 32 245666555556667789999999999999999
Q ss_pred eEEeecCCCcEEEeecC
Q 020461 302 SFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 302 ~lat~s~Dg~i~l~~~~ 318 (326)
+|||||.||+|+||+++
T Consensus 394 ~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 394 YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEETTSEEEEEC--
T ss_pred EEEEEeCCCcEEEEeCC
Confidence 99999999999999864
No 3
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-45 Score=314.21 Aligned_cols=320 Identities=41% Similarity=0.740 Sum_probs=262.8
Q ss_pred CceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 2 ~~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
++..+++|...|++++|+|++++|++++.|+.|++|++.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCC-----CCCceEEEeccCcc--ceeEEEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-----QGGESVLILKGPQG--RINRAVW 154 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~i~~~~~ 154 (326)
.+++.+..+....++.++.+.++...++++..........+.++++...... ........+..|.+ .+.+++|
T Consensus 104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 9999998888888888999998777666654432222234444544332111 11123444556666 8999999
Q ss_pred ecCCcEEEEeeCCCcEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461 155 GPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (326)
Q Consensus 155 ~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (326)
+|+++.|++++.|+.|++||+++ ++....+ ..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+....
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 260 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSI---DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC 260 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTTEEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCcEeEEEE---ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC
Confidence 99999999999999999999987 4544433 3688899999999999999999999999999999999999998888
Q ss_pred ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 313 (326)
Q Consensus 234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~ 313 (326)
.+..++++|++..+++++..+...+...+...+...+++|+....+.+..+.+|.+.|++++|+|++++|++|+.||.|+
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 340 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIR 340 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence 99999999999999998877766666666666666788999888888888899999999999999999999999999999
Q ss_pred EeecCCCceee
Q 020461 314 LHHFDPDYFNI 324 (326)
Q Consensus 314 l~~~~~~~~~~ 324 (326)
+|+++...+..
T Consensus 341 iw~~~~~~~~~ 351 (369)
T 3zwl_B 341 LHHFEKSYFDF 351 (369)
T ss_dssp EEEECHHHHTC
T ss_pred EEECccccchh
Confidence 99998876544
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=304.78 Aligned_cols=286 Identities=21% Similarity=0.288 Sum_probs=237.6
Q ss_pred eeeecCCceeEEEEccC----CCEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461 5 LMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~----~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~ 78 (326)
.+++|.+.|.+++|+|+ +++|++|+.|++|+||+..+++. ...+.+|...|.+++|++++.++++++.|++|++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 45689999999999985 67999999999999999887653 4568899999999999999999999999999999
Q ss_pred EEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 79 WNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 79 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
||+.+++.+..+.. ...+..+.++++...++.+.. ...+.++.+. .+.....+..+...|.+++|+|+
T Consensus 107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----dg~v~i~~~~------~~~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----VGKVNIFGVE------SGKKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----TSEEEEEETT------TCSEEEEEECSSSCEEEEEECTT
T ss_pred EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCcEEEEEcC------CCceeEEecCCCceEEEEEECCC
Confidence 99999988877654 345667888887776665442 2233444432 23456677788889999999999
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceE
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN 236 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~ 236 (326)
+++|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++.+|++|+.|++|++||+++++++..+. +...+.
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 252 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGKLLHTL---EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 252 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEE---cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceE
Confidence 999999999999999999998876654 4788999999999999999999999999999999998888775 456799
Q ss_pred EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
+++|+|++..+++++.+. .+++|+....+.+..+.+|.+.|++++|+|++++|++++.||+|+||+
T Consensus 253 ~~~~sp~~~~l~s~s~D~--------------~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDK--------------SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEECTTSSEEEEEETTS--------------CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEEECCCCCEEEEEeCCC--------------cEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 999999998877665432 245666666666777889999999999999999999999999999999
Q ss_pred cC
Q 020461 317 FD 318 (326)
Q Consensus 317 ~~ 318 (326)
++
T Consensus 319 ~p 320 (321)
T 3ow8_A 319 CP 320 (321)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 5
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7e-44 Score=300.37 Aligned_cols=294 Identities=23% Similarity=0.356 Sum_probs=232.9
Q ss_pred eeeeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCC-----CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461 4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADN-----GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~-----~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~ 77 (326)
..|++|.+.|.+++|+|++ ++|++|+.|++|++|++.+ +..+..+++|...|.+++|+|++++|++|+.|++|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 4688999999999999965 8999999999999999864 234678899999999999999999999999999999
Q ss_pred EEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 78 ~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
+||+.+++....+. +..++.++.+.++...++.+.. +..+.+|++. +..+..+.+|...|.++.++|
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----D~~i~vwd~~-------~~~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-----DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET-----TSCEEEEETT-------SCEEEEECCCSSCEEEEEECC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECC-------CCeEEEEeccCCcEEEEEEcc
Confidence 99999998887765 4567888888887665554432 2234555542 346777889999999999998
Q ss_pred CC------cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 157 LN------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 157 ~~------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
.. ..+++++.|++|++||+++++....+ .+|...|.+++++|++.+|++|+.||+|++||+++++++..+.
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 235 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheee---cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 54 48999999999999999887665543 4799999999999999999999999999999999999999988
Q ss_pred eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCC
Q 020461 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG 310 (326)
Q Consensus 231 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg 310 (326)
....+.+++|+|++..++++.. ++.. .++...... ..............|...+.+++|+|||++|++|+.||
T Consensus 236 ~~~~v~~~~~sp~~~~la~~~~-~~i~--v~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 236 AQDEVFSLAFSPNRYWLAAATA-TGIK--VFSLDPQYL----VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp CCSCEEEEEECSSSSEEEEEET-TEEE--EEEETTEEE----EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred CCCcEEEEEEcCCCCEEEEEcC-CCcE--EEEeCcCee----eeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 8888999999999887766543 2222 222111111 00001111112235677899999999999999999999
Q ss_pred cEEEeecCC
Q 020461 311 YVRLHHFDP 319 (326)
Q Consensus 311 ~i~l~~~~~ 319 (326)
+|+||++..
T Consensus 309 ~i~vWd~~t 317 (319)
T 3frx_A 309 VIRVWQVMT 317 (319)
T ss_dssp CEEEEEEEE
T ss_pred eEEEEEEee
Confidence 999999753
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-43 Score=303.59 Aligned_cols=284 Identities=19% Similarity=0.280 Sum_probs=234.8
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+++|...|.+++|+|++++|++|+.|++|++||..+++....+..|...|.+++|+|+++++++++.|+++++|++..
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred Cc-------EEEEEecCCCcceeeeecCCeEEE-EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 84 GA-------QLFTFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 84 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
.. ......+...+..+.|.+++..++ ++.+ ..+.+|++. .+..+..+.+|...|.++.++
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D------~~v~lwd~~------~~~~~~~~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD------GTCALWDVE------SGQLLQSFHGHGADVLCLDLA 205 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT------SEEEEEETT------TCCEEEEEECCSSCEEEEEEC
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC------CcEEEEeCC------CCeEEEEEcCCCCCeEEEEEE
Confidence 31 111223455667777887665443 3333 345555543 346778889999999999998
Q ss_pred cC--CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-
Q 020461 156 PL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE- 232 (326)
Q Consensus 156 ~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 232 (326)
|. +..|++|+.|++|++||+++++++..+ .+|...|.+++|+|++.+|++|+.|++|++||+++.+.+..+...
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~ 282 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAF---ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES 282 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence 74 679999999999999999998876654 478999999999999999999999999999999998877666433
Q ss_pred --cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCC
Q 020461 233 --RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG 310 (326)
Q Consensus 233 --~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg 310 (326)
..+.+++|+|++..+++++.+. .+++|+...++.+..+.+|.++|++++|+|||++||+|+.||
T Consensus 283 ~~~~~~~~~~s~~g~~l~~g~~d~--------------~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 283 IIFGASSVDFSLSGRLLFAGYNDY--------------TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTS--------------CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred cccceeEEEEeCCCCEEEEEECCC--------------cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 3578999999998877665432 245566555556667789999999999999999999999999
Q ss_pred cEEEee
Q 020461 311 YVRLHH 316 (326)
Q Consensus 311 ~i~l~~ 316 (326)
+|+||+
T Consensus 349 ~v~vW~ 354 (354)
T 2pbi_B 349 TLRVWA 354 (354)
T ss_dssp EEEEEC
T ss_pred CEEecC
Confidence 999995
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-44 Score=310.45 Aligned_cols=288 Identities=22% Similarity=0.339 Sum_probs=225.2
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..|++|.+.|++++|+|++++|++|+.|++|+|||..+++....+++|...|.+++|+|++++|++|+.|+++++||+.+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CcE-------EEEE-ecCCCcceeeeecCC--eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe-----ccCccc
Q 020461 84 GAQ-------LFTF-NFDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-----KGPQGR 148 (326)
Q Consensus 84 ~~~-------~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 148 (326)
... ...+ .+...+.++.+.+.+ .++.++.+. .+.+|++. .+..+..+ .+|...
T Consensus 140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~------~i~~wd~~------~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ------TCVLWDVT------TGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTS------CEEEECTT------TCCEEEEECCCSSSSCCSC
T ss_pred CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCC------cEEEEEcC------CCcEEEEeecccCCCCccC
Confidence 321 1111 223445556666542 344433333 34445442 23344444 578899
Q ss_pred eeEEEEec-CCcEEEEeeCCCcEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461 149 INRAVWGP-LNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (326)
Q Consensus 149 i~~~~~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (326)
|.++.++| ++.+|++|+.|++|++||++. ++.+.. ..+|...|.+++|+|++.+|++|+.|++|++||+++++++
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT---YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE---ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE---ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 99999987 778999999999999999974 344433 3479999999999999999999999999999999999988
Q ss_pred EEEeec--------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc----ccccCcceeEE
Q 020461 227 KTYVTE--------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG----VKGHFGPINAL 294 (326)
Q Consensus 227 ~~~~~~--------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~v 294 (326)
..+... ..+.+++|+|++..+++++.++. +++|+....+.+.. ..+|.+.|+++
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~--------------i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD--------------CYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC--------------EEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECCCC--------------EEEEECCCCceEEEEecccCCCCCceEEE
Confidence 876432 13789999999988877654332 33444333322222 25799999999
Q ss_pred EECCCCceEEeecCCCcEEEeecCCC
Q 020461 295 AFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+|+|||.+|||||.||+|+||++...
T Consensus 351 ~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 351 GLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EECCCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999999999999999998753
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-42 Score=291.00 Aligned_cols=290 Identities=15% Similarity=0.217 Sum_probs=235.8
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
.++++|.+.|.+++|+|++++|++++.|++|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+.+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEE
Q 020461 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI 161 (326)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 161 (326)
++.+..+. +...+.++.+++++..++.+.. +..+.+|++... ......+.+|...|.+++|+| ++..|
T Consensus 87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-----D~~v~lWd~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWENN-----WALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSCEEEEEGGGT-----TEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred CcEEEEEeCCCCcEEEEEEcCCCCEEEEECC-----CCeEEEEECCCC-----cchhhhhcccCCcEEEEEECCCCCCEE
Confidence 99887776 4567888899987766554432 234555655321 234567789999999999999 56899
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC--CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEE
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 238 (326)
++|+.|++|++||+++++....+. .+|...+..++++| ++.+|++|+.|++|++||+++++++..+. +...+.++
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~ 234 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEE
Confidence 999999999999998766544332 35667788888876 77899999999999999999999998886 45689999
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc--eEEeecCCCcEEEee
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK--SFSSGGEDGYVRLHH 316 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~--~lat~s~Dg~i~l~~ 316 (326)
+|+|++..+++++. |+ .+++|+....+....+..|.+.+++++|+|++. ++|+|+.|| +.+|+
T Consensus 235 ~~~p~~~~l~s~s~-Dg-------------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~ 299 (304)
T 2ynn_A 235 VFHPTLPIIISGSE-DG-------------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLS 299 (304)
T ss_dssp EECSSSSEEEEEET-TS-------------CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEE
T ss_pred EECCCCCEEEEEcC-CC-------------eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEE
Confidence 99999887766544 33 245666666666667788899999999999875 577776555 66666
Q ss_pred cCCC
Q 020461 317 FDPD 320 (326)
Q Consensus 317 ~~~~ 320 (326)
+..+
T Consensus 300 ~~~~ 303 (304)
T 2ynn_A 300 LGND 303 (304)
T ss_dssp CC--
T ss_pred eccC
Confidence 6543
No 9
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7e-42 Score=287.26 Aligned_cols=289 Identities=22% Similarity=0.364 Sum_probs=235.5
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|...|.+++|+|++++|++++.|+.|++|+..+++....+.+|...|.+++|+|++++|++++.|++|++||+++
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
++.+..+. +...+.++.+.++...++.+.. +..+.+|++. .+.....+..|..+|.++.|+|++.+|+
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~iwd~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-----DESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECC------CCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 98887775 3456777888877665554432 2234455442 3456777889999999999999999999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-c--eEEEE
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-P--VNAVT 239 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~ 239 (326)
+++.|+.|++||+++++.+..+. ..+...+..++++|++.+|++++.|+.|++||+++++++..+.... . .....
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 243 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred EEeCCCcEEEEECCCCceeeEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence 99999999999999887765443 3466789999999999999999999999999999999888775321 1 22233
Q ss_pred eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec--CCCcEEEeec
Q 020461 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG--EDGYVRLHHF 317 (326)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s--~Dg~i~l~~~ 317 (326)
+++.....+++++.|+ .+++|+....+.+..+.+|.+.|.+++|+|++.+||+++ .|++|++|+.
T Consensus 244 ~~~~~~~~l~sg~~dg-------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 244 FSVTGGKWIVSGSEDN-------------LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EECSSSCEEEECCTTS-------------CEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred EEeCCCcEEEEECCCC-------------EEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 4443444455555554 245666666666777889999999999999999999987 6999999997
Q ss_pred C
Q 020461 318 D 318 (326)
Q Consensus 318 ~ 318 (326)
|
T Consensus 311 d 311 (312)
T 4ery_A 311 D 311 (312)
T ss_dssp C
T ss_pred C
Confidence 6
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=295.15 Aligned_cols=248 Identities=18% Similarity=0.213 Sum_probs=200.9
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeee----ccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT----YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~----~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
...|+..|.+++|+|++ .|++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|++++|++|+.|++|++||+
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34567889999999985 688999999999999999876544 3489999999999999999999999999999999
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-E
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-T 160 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 160 (326)
++++.+ ..+.+|.+.|.+++|+|++. +
T Consensus 157 ~~~~~~----------------------------------------------------~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 157 AQQVVL----------------------------------------------------SSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp TTTEEE----------------------------------------------------EEECCCSSCEEEEEECSSCTTE
T ss_pred CCCcEE----------------------------------------------------EEEcCcCCceEEEEecCCCCCc
Confidence 876543 23457888999999999885 7
Q ss_pred EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEE
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 238 (326)
|++++.|++|++||+++++....+.. ..|...+++++++|+ +.+|++|+.||+|++||+++++++..+. +...+.++
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred eeeeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 89999999999999999887765432 345667899999985 5678999999999999999999998886 45789999
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEEEeec
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHF 317 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~ 317 (326)
+|+|++..++++++.|+. +++|+...++. ..+.+|.+.|++++|+|++. +|+|||.||+|++|++
T Consensus 264 ~fsp~g~~~lasgs~D~~-------------i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCS-------------LAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EECSSSSCCEEEEETTSC-------------EEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEccCCCeEEEEEeCCCe-------------EEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 999998776666665542 34555544443 34678999999999999987 5789999999999999
Q ss_pred CCCc
Q 020461 318 DPDY 321 (326)
Q Consensus 318 ~~~~ 321 (326)
+.+-
T Consensus 330 ~~~~ 333 (344)
T 4gqb_B 330 PTEP 333 (344)
T ss_dssp CC--
T ss_pred CCCC
Confidence 8764
No 11
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.7e-42 Score=291.24 Aligned_cols=297 Identities=22% Similarity=0.319 Sum_probs=222.4
Q ss_pred eeeeecCCceeEEEE-----cc-CCCEEEeecCCCCeEEEecCCC-------CeeeeccCcccceEEEEEcCCCCeEEEE
Q 020461 4 ILMKGHERPLTYLKY-----NK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDSMTLITG 70 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~-----s~-~~~~l~s~~~d~~v~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~l~s~ 70 (326)
..|++|.+.|++++| ++ ++++|++|+.|++|++|++.++ .....+.+|...|.+++|+|++++++++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 94 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS 94 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence 468999999999999 76 8999999999999999998754 3456789999999999999999999999
Q ss_pred eCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe---ccCc
Q 020461 71 SADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQ 146 (326)
Q Consensus 71 ~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 146 (326)
+.|++|++||+++++.+..+. +..++.++.|++++..++.+.. +..+.+|++.. ...... .+|.
T Consensus 95 s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-----d~~i~~wd~~~-------~~~~~~~~~~~~~ 162 (343)
T 2xzm_R 95 SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-----EREIKLWNILG-------ECKFSSAEKENHS 162 (343)
T ss_dssp ETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-----TSCEEEEESSS-------CEEEECCTTTSCS
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-----CCEEEEEeccC-------CceeeeecccCCC
Confidence 999999999999998887775 4567888999987655544332 22344454321 122222 3688
Q ss_pred cceeEEEEecCC----------cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEE
Q 020461 147 GRINRAVWGPLN----------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (326)
Q Consensus 147 ~~i~~~~~~~~~----------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~ 216 (326)
..|.++.|+|++ .+|++++.|++|++||.+ .+.... ..+|...|.+++|+|++.+|++|+.|++|+
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~---~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYT---FKAHESNVNHLSISPNGKYIATGGKDKKLL 238 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEE---EECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEE---EcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence 889999999986 789999999999999954 333322 347889999999999999999999999999
Q ss_pred EeecC-CcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeee-EeecccceeeeccccccCcceeEE
Q 020461 217 LWDAR-TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-KFFDKILQEEIGGVKGHFGPINAL 294 (326)
Q Consensus 217 iwd~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v 294 (326)
+||++ .......+.....+.+++|+|++..+++ +.++. +..+|...+.... ..+............+|...|+++
T Consensus 239 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~-~~d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 315 (343)
T 2xzm_R 239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV-GTDQG--VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315 (343)
T ss_dssp EEESSCCSSCSEEEECSSCEEEEEECSSSCEEEE-EESSC--EEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred EEECCCCcccceeecCCCcEEEEEECCCCCEEEE-ECCCC--EEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence 99994 4445555555667999999999866543 33322 3334332221100 000000000111234788999999
Q ss_pred EECCCCceEEeecCCCcEEEeecCC
Q 020461 295 AFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+|+|+|++||+|+.||+|++|+++.
T Consensus 316 ~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EECCCCCeEEEecCCceEEEEEEEc
Confidence 9999999999999999999999764
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.8e-43 Score=298.41 Aligned_cols=291 Identities=16% Similarity=0.207 Sum_probs=218.6
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecC------CCCeEEEecCCCCeeee----ccCcccceEEEEEcCCCCeEEEEeCC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAK------DHTPTVWFADNGERLGT----YRGHNGAVWCCDVSRDSMTLITGSAD 73 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~------d~~v~iw~~~~~~~~~~----~~~h~~~V~~~~~~~~~~~l~s~~~d 73 (326)
....+|+..|.+++|||||++|++||. |+++++|+..++..... ..+|...|.+++|+|+++ +++++.|
T Consensus 36 ~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~d 114 (357)
T 4g56_B 36 TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDS 114 (357)
T ss_dssp ----CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETT
T ss_pred CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECC
Confidence 445679999999999999999999997 77899998877755433 356888999999999875 5678899
Q ss_pred CcEEEEEccCCcEEEEE-----ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc
Q 020461 74 QTAKLWNVETGAQLFTF-----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148 (326)
Q Consensus 74 ~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (326)
++|++||+.+++..... .+...+.++.++++...++.+.. +..+.+|++. .+..+..+++|...
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-----dg~v~iwd~~------~~~~~~~~~~h~~~ 183 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-----DFSVKVWDLS------QKAVLKSYNAHSSE 183 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSC
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-----CCeEEEEECC------CCcEEEEEcCCCCC
Confidence 99999999887654322 34567888889887665554432 2234445432 35677888999999
Q ss_pred eeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceE
Q 020461 149 INRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELI 226 (326)
Q Consensus 149 i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~ 226 (326)
|++++|+|++. .+++++.|++|++||+++++....+. ...|...+++++|+|+ +.+|++|+.|+.|++||+++++++
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~ 262 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA 262 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC-CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee-eccccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence 99999999875 78999999999999999887665443 2356778999999997 467889999999999999999998
Q ss_pred EEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC-CCceEE
Q 020461 227 KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFS 304 (326)
Q Consensus 227 ~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~la 304 (326)
+.+. +...+.+++|+|++..++++++.|+. +++|+...++.+. ..+|.+.|++|+|+| |+.+||
T Consensus 263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-------------i~iwd~~~~~~~~-~~~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 263 QTSAVHSQNITGLAYSYHSSPFLASISEDCT-------------VAVLDADFSEVFR-DLSHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSCCEEEEETTSC-------------EEEECTTSCEEEE-ECCCSSCEEEEEECSSSTTEEE
T ss_pred EEEeccceeEEEEEEcCCCCCEEEEEeCCCE-------------EEEEECCCCcEeE-ECCCCCCEEEEEEeCCCCCEEE
Confidence 8876 45689999999998776666665542 4455555544443 347999999999998 899999
Q ss_pred eecCCCcEEEeecCCCc
Q 020461 305 SGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 305 t~s~Dg~i~l~~~~~~~ 321 (326)
|||.||+|++|+++.+.
T Consensus 329 s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEETTSCEEEEECC---
T ss_pred EEcCCCeEEEEECCCCC
Confidence 99999999999997754
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.2e-42 Score=290.57 Aligned_cols=303 Identities=21% Similarity=0.306 Sum_probs=225.7
Q ss_pred eeeeecCC-ceeEEEEccCCCEEEeecCCCCeEEEecCCCCee---eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461 4 ILMKGHER-PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL---GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~-~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~---~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w 79 (326)
..+++|.. .|.+++|+|+|++|++|+.|++|+||+..++... ....+|.+.|.+++|+|++++|++|+.|+++++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 45778988 8999999999999999999999999999887543 2236899999999999999999999999999999
Q ss_pred EccCCcE--EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 80 NVETGAQ--LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 80 d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
|+.++.. +..+. +..++.++.|++++..++.+.. +..+.+|++... .....+..+.+|...|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~-----D~~v~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR-----DKSVWVWEVDEE---DEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp EECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEECTT---SCEEEEEEECCCCSCEEEEEECS
T ss_pred EccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC-----CCeEEEEECCCC---CCeEEEEEecCcCCCeEEEEECC
Confidence 9987643 33443 4567888899987665554432 233455554321 11234567789999999999999
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-------------
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------------- 223 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~------------- 223 (326)
++.+|++|+.|++|++||.++++.... ....+|...|.+++|+|++.+|++|+.|++|++||....
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCC-ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEE-EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 999999999999999999987653211 223579999999999999999999999999999996432
Q ss_pred --ceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461 224 --ELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (326)
Q Consensus 224 --~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d 299 (326)
+++..+. +...+..++|+|++..++++++++...+ ++........ ............+|.+.|++++|+|+
T Consensus 240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~v--w~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~v~~~p~ 314 (345)
T 3fm0_A 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV--FQEDPNSDPQ---QPTFSLTAHLHQAHSQDVNCVAWNPK 314 (345)
T ss_dssp EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEE--EEECTTSCTT---SCCEEEEEEETTSSSSCEEEEEECSS
T ss_pred ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEE--EEeCCCCCcc---eeeEEEEeeecccccCcEeEeEEeCC
Confidence 2233332 3457899999999988887766544322 2211110000 00000112234689999999999999
Q ss_pred Cc-eEEeecCCCcEEEeecCCC
Q 020461 300 GK-SFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 300 ~~-~lat~s~Dg~i~l~~~~~~ 320 (326)
+. +|||||.||+|+||++...
T Consensus 315 ~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 315 EPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp STTEEEEEETTSCEEEEEECC-
T ss_pred CceEEEEcCCCCcEEEEEecCC
Confidence 84 9999999999999998764
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.6e-42 Score=312.65 Aligned_cols=301 Identities=15% Similarity=0.172 Sum_probs=228.5
Q ss_pred eeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
.+.+|...|.+++|+|+++ +|++|+.|++|++|+..++++..++.+|.+.|.+++|+|++++|++++.|++|++||+.+
T Consensus 142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~ 221 (611)
T 1nr0_A 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221 (611)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 4689999999999999987 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEE--------ecCCCcceeeeecCCeEEEE-EcCccceeceee---eeeeeccC---------------------
Q 020461 84 GAQLFTF--------NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAI---HVKRIARD--------------------- 130 (326)
Q Consensus 84 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~--------------------- 130 (326)
++....+ .+...+.++.|++++..++. +.+..+.++... ....+...
T Consensus 222 g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 9887776 24567788889887655444 333332222110 00000000
Q ss_pred -------CCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc-----------------
Q 020461 131 -------PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----------------- 186 (326)
Q Consensus 131 -------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----------------- 186 (326)
.....+.....+.+|...|.+++|+|++++|++++.|++|++||+.+++.......
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 00012234556779999999999999999999999999999999987654321100
Q ss_pred --------------------------------------------------------------ccCcceeeEEEEEcCCCC
Q 020461 187 --------------------------------------------------------------ETGHKKTITSLAKAADGS 204 (326)
Q Consensus 187 --------------------------------------------------------------~~~h~~~v~~v~~s~~~~ 204 (326)
...|...+.+++++|||+
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 001234467899999999
Q ss_pred eEEEEeCCCeEEEeecCCcce--EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeee
Q 020461 205 HFLTGSLDKSAKLWDARTLEL--IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEI 281 (326)
Q Consensus 205 ~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~ 281 (326)
+|++|+.|++|++||+++++. +....+...+.+++|+|++..+++++.+.. +++|+... .+..
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~--------------v~~w~~~~~~~~~ 527 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK--------------VIPYSVANNFELA 527 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC--------------EEEEEGGGTTEES
T ss_pred EEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCC--------------EEEEEcCCCCcee
Confidence 999999999999999987643 333446678999999999988877654332 34444433 2222
Q ss_pred cc--ccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 282 GG--VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 282 ~~--~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
.. ..+|.+.|++++|+|||++|||||.|++|+||+++.
T Consensus 528 ~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 528 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred eeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 22 345999999999999999999999999999999975
No 15
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.9e-41 Score=285.01 Aligned_cols=295 Identities=22% Similarity=0.299 Sum_probs=222.6
Q ss_pred eeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCC-----eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~ 78 (326)
+|+||.+.|++++|+|+ +++|+|||.|++|+|||+.+.+ ....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 58899999999999998 6899999999999999987654 45678999999999999999999999999999999
Q ss_pred EEccCCcEEEEEecC-CCcceeeeecCCeEEE-EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 79 WNVETGAQLFTFNFD-SPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 79 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
|+............. .......+.+.+..++ .+.+.. +.++... ..........+|...+..+.|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~------~~~~d~~-----~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT------IKLWNTL-----GVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSC------EEEECTT-----SCEEEEECSSSCSSCEEEEEECS
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeecCCCe------EEEEEeC-----CCceEEEEeccccCcccceEEcc
Confidence 999888766655433 3333344444444333 333322 2233221 11223444567888999999988
Q ss_pred CC--cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc
Q 020461 157 LN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP 234 (326)
Q Consensus 157 ~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 234 (326)
++ ..+++++.|+.|++||+++++....+ .+|...|++++++|++.+|++|+.|++|++||+++.+++..+.....
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 258 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNH---IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCceeeEe---cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce
Confidence 65 57889999999999999988776554 47899999999999999999999999999999999999999988889
Q ss_pred eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l 314 (326)
+.+++++|++..+ +++. ++ .+..+|.+.+.....+ ..........+|...|++++|+|||++||||+.||+|+|
T Consensus 259 v~~~~~~~~~~~~-~~~~-d~-~i~iwd~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 259 INALCFSPNRYWL-CAAT-GP-SIKIWDLEGKIIVDEL---KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp EEEEEECSSSSEE-EEEE-TT-EEEEEETTTTEEEEEE---CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEeeecCCCCcee-eccC-CC-EEEEEECCCCeEEEec---cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 9999999976543 3332 32 2444554433321111 111112234578999999999999999999999999999
Q ss_pred eecCC
Q 020461 315 HHFDP 319 (326)
Q Consensus 315 ~~~~~ 319 (326)
|++..
T Consensus 333 W~~~t 337 (340)
T 4aow_A 333 WQVTI 337 (340)
T ss_dssp EEEEC
T ss_pred EeCCC
Confidence 99864
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.1e-41 Score=308.20 Aligned_cols=300 Identities=18% Similarity=0.198 Sum_probs=236.1
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
...+.+.+.+++|+|||++|++++. ++|++|++.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++
T Consensus 14 ~~~~~g~~~~~~~spdg~~l~~~~~-~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 14 PRTARGTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 92 (611)
T ss_dssp CCCCTTCCCCCEECTTSSEEEEEET-TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred CCcccCceeEEeeCCCCCEEEeCCC-CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence 3445677889999999999999884 699999999999999999999999999999999999999999999999997654
Q ss_pred E--EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EE
Q 020461 86 Q--LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TI 161 (326)
Q Consensus 86 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 161 (326)
. ...+. +..++.++.|++++..+++...... ....+.+++. +.....+.+|...|++++|+|+++ .|
T Consensus 93 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~-~~~~v~~wd~--------~~~~~~l~gh~~~v~~v~f~p~~~~~l 163 (611)
T 1nr0_A 93 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-RFGHVFLFDT--------GTSNGNLTGQARAMNSVDFKPSRPFRI 163 (611)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-CSEEEEETTT--------CCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred ceeeEeecccCCceEEEEECCCCCEEEEEECCCC-ceeEEEEeeC--------CCCcceecCCCCCceEEEECCCCCeEE
Confidence 3 23333 4577888999988776655443110 0112223321 223445789999999999999987 69
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE--------eecc
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--------VTER 233 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------~~~~ 233 (326)
++|+.|++|++||..+++....+ .+|...|.+++|+|++.+|++|+.|++|++||+++++++..+ .+..
T Consensus 164 ~s~s~D~~v~lwd~~~~~~~~~l---~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKFKSTF---GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp EEEETTSCEEEEETTTBEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred EEEeCCCeEEEEECCCCeEeeee---ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC
Confidence 99999999999999887665544 479999999999999999999999999999999999888877 3556
Q ss_pred ceEEEEeCCCCCeeEEecCCCcceeEeecccCceee-------------------------------eEeecccceeeec
Q 020461 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE-------------------------------AKFFDKILQEEIG 282 (326)
Q Consensus 234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------------------------------~~~~~~~~~~~~~ 282 (326)
.+.+++|+|++..+++++.+. .+..||.+.+... +++|+...+....
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~--~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~ 318 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ 318 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCC--eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce
Confidence 899999999998887765443 2445565443321 2334433334445
Q ss_pred cccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 283 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 283 ~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.+.+|...|++++|+|||++|++++.|++|++|++...
T Consensus 319 ~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 56799999999999999999999999999999998754
No 17
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.7e-41 Score=280.96 Aligned_cols=258 Identities=18% Similarity=0.261 Sum_probs=199.8
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~~w 79 (326)
.++.+|.+.|.+++|+|+|++|++|+.|++|+||++.++ +++.++.+|.++|++++|+++ +++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 568899999999999999999999999999999998753 677889999999999999864 8899999999999999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-- 157 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 157 (326)
|+++++.. .+..+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~--------------------------------------------------~~~~~~~h~~~v~~v~~~p~~~ 112 (297)
T 2pm7_B 83 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY 112 (297)
T ss_dssp EBSSSCBC--------------------------------------------------CCEEECCCSSCEEEEEECCGGG
T ss_pred EcCCCceE--------------------------------------------------EEEEeecCCCceeEEEeCcCCC
Confidence 98764310 11223567788999999997
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-------------CCeEEEEeCCCeEEEeecCCcc
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-------------GSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-------------~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
+.+|++++.|++|++||++++..... ....+|...|.+++|+|+ +.+|++|+.|++|++||+++++
T Consensus 113 g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 113 GPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp CSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred CcEEEEEECCCcEEEEEecCCCceee-eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 78999999999999999987642211 223578899999999997 5689999999999999998765
Q ss_pred ----eEEEEe-eccceEEEEeCCCC--CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC
Q 020461 225 ----LIKTYV-TERPVNAVTMSPLL--DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297 (326)
Q Consensus 225 ----~~~~~~-~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 297 (326)
+...+. +...+.+++|+|++ ...+++++.|+. +..+|.+..... .........+|...|.+++|+
T Consensus 192 ~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s 263 (297)
T 2pm7_B 192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNEQGP-------WKKTLLKEEKFPDVLWRASWS 263 (297)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTTSC-------CEEEESSSSCCSSCEEEEEEC
T ss_pred ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCCCCc-------cceeeeecccCCCcEEEEEEC
Confidence 444443 45679999999986 344555555542 222322211000 001111124678899999999
Q ss_pred CCCceEEeecCCCcEEEeecCCC
Q 020461 298 PDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 298 ~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
|+|++||+++.||+|+||+...+
T Consensus 264 ~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 264 LSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp SSSCCEEEEETTSCEEEEEECTT
T ss_pred CCCCEEEEEcCCCcEEEEEECCC
Confidence 99999999999999999998744
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-40 Score=279.44 Aligned_cols=292 Identities=16% Similarity=0.225 Sum_probs=211.3
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC--Ceeeec-cC-cccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTY-RG-HNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~-~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~w 79 (326)
..+++|.++|.+++|+|+ +|++|+.|++|++|++.++ ..+..+ .+ |.+.|.+++|+|++++|++++.|++|++|
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 568899999999999998 9999999999999999875 345555 44 99999999999999999999999999999
Q ss_pred EccCC-------cEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461 80 NVETG-------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (326)
Q Consensus 80 d~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (326)
|+... +....+. +..++.++.|++++..++.+.. +..+.+|++... ....+.+..+.+|...|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-----D~~v~iwd~~~~--~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-----DKSVWIWETDES--GEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp EC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-----TSCEEEEECCTT--CCCCEEEEEECCCSSCEEE
T ss_pred EcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-----CCEEEEEeccCC--CCCeEEEEEeccCCCceEE
Confidence 98532 2333333 4567888899987765554432 234455554211 1122456778899999999
Q ss_pred EEEecCCcEEEEeeCCCcEEEEECCCC--ccccccccccCcceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCc----
Q 020461 152 AVWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTL---- 223 (326)
Q Consensus 152 ~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~---- 223 (326)
+.|+|++.+|++|+.|++|++||..++ +++.. ..+|...|.+++|+|+ +.+|++|+.|++|++||++++
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV---LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE---ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence 999999999999999999999998765 33333 3579999999999998 678999999999999998765
Q ss_pred ----ceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCc-ceeEEEE
Q 020461 224 ----ELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-PINALAF 296 (326)
Q Consensus 224 ----~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~ 296 (326)
.+...+. +...+.+++|++.+ .+++ ++.|+. +..+|...+.. ........+|.. .|++++|
T Consensus 236 ~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s-~~~dg~-v~iw~~~~~~~---------~~~~~~~~~h~~~~v~~v~~ 303 (330)
T 2hes_X 236 QQEWVCEAILPDVHKRQVYNVAWGFNG-LIAS-VGADGV-LAVYEEVDGEW---------KVFAKRALCHGVYEINVVKW 303 (330)
T ss_dssp CEEEEEEEECCSCCSSCEEEEEECTTS-CEEE-EETTSC-EEEEEEETTEE---------EEEEEESCTTTTSCEEEEEE
T ss_pred cceeEEeeecccccccceEEEEEcCCC-EEEE-EeCCCE-EEEEEcCCCce---------EEEeccccccccceEEEEEE
Confidence 2333332 45679999999654 4444 444432 22233221111 011122356877 8999999
Q ss_pred CC--CCceEEeecCCCcEEEeecCC
Q 020461 297 NP--DGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 297 s~--d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+| ++.+||||+.||+|+||+++.
T Consensus 304 ~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 304 LELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp C-----CCEEEEETTSEEEEEEC--
T ss_pred ecCCCceEEEEecCCCcEEEEEecc
Confidence 99 799999999999999999864
No 19
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.6e-41 Score=293.06 Aligned_cols=301 Identities=14% Similarity=0.169 Sum_probs=225.6
Q ss_pred eeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEE
Q 020461 5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWN 80 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd 80 (326)
...+|...|+|++|+| ++++||+|+.||+|+|||+.+++. ...+.+|.+.|.+++|+| ++++|+||+.|++|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 4567899999999999 567999999999999999987754 456678999999999998 688999999999999999
Q ss_pred ccCCcEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 81 VETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
++++........+ ..+.++.+.++..+++++.. +..+.++++. +..+..+.+|...|++++|+|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----dg~i~~wd~~-------~~~~~~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN-----VGNVILLNMD-------GKELWNLRMHKKKVTHVALNPC 261 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS-----SSBEEEEESS-------SCBCCCSBCCSSCEEEEEECTT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC-----CCcEeeeccC-------cceeEEEecccceEEeeeecCC
Confidence 9876544333322 23456777777666555432 2234444432 2345567889999999999999
Q ss_pred Cc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc---
Q 020461 158 NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--- 233 (326)
Q Consensus 158 ~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--- 233 (326)
+. +|++|+.|++|++||+++.+....+....+|...|++++|+|++.+|++++.||+|++||++++++...+....
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 86 78899999999999998877665555556899999999999999999999999999999999988777653211
Q ss_pred ----ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-cccCcceeEE-EECCCCceEEeec
Q 020461 234 ----PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINAL-AFNPDGKSFSSGG 307 (326)
Q Consensus 234 ----~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v-~~s~d~~~lat~s 307 (326)
......++|.+..++++...+...+...... ...+++|+...++.+..+ .+|...|.++ +|+|+|.+||+|+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYE--LRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTC--CCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecC--CCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 1234567787777776655444322211111 113567776665555443 4688889887 6999999999987
Q ss_pred CCCcEEEeecCCC
Q 020461 308 EDGYVRLHHFDPD 320 (326)
Q Consensus 308 ~Dg~i~l~~~~~~ 320 (326)
|++|+||++++.
T Consensus 420 -d~~i~iW~~~~g 431 (435)
T 4e54_B 420 -GYHILIWSQQEA 431 (435)
T ss_dssp -SSEEEECCCC--
T ss_pred -CCcEEEEECCcC
Confidence 889999998764
No 20
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.8e-41 Score=285.24 Aligned_cols=254 Identities=17% Similarity=0.242 Sum_probs=194.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcC--CCCeEEEEeCCCcEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~~w 79 (326)
.++.+|.+.|.+++|+|+|++|++|+.|++|+|||+.++. .+..+.+|.++|++++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 5678999999999999999999999999999999998774 4678999999999999986 48899999999999999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-- 157 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 157 (326)
|+++++. .....+.+|...|++++|+|+
T Consensus 87 d~~~~~~--------------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~ 116 (316)
T 3bg1_A 87 REENGTW--------------------------------------------------EKSHEHAGHDSSVNSVCWAPHDY 116 (316)
T ss_dssp CCSSSCC--------------------------------------------------CEEEEECCCSSCCCEEEECCTTT
T ss_pred ECCCCcc--------------------------------------------------eEEEEccCCCCceEEEEECCCCC
Confidence 9876431 112234578889999999998
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-----------------CCeEEEEeCCCeEEEeec
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-----------------GSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----------------~~~l~s~s~dg~i~iwd~ 220 (326)
+.+|++|+.|++|++||++.+..........+|...+.+++|+|+ +.+|++|+.|++|++||+
T Consensus 117 g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 117 GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence 779999999999999999875332212234578889999999997 468999999999999999
Q ss_pred CCc---ceEEEEe-eccceEEEEeCCCC---CeeEEecCCCcceeEeecccCceeeeEeecccc----eeeeccccccCc
Q 020461 221 RTL---ELIKTYV-TERPVNAVTMSPLL---DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL----QEEIGGVKGHFG 289 (326)
Q Consensus 221 ~~~---~~~~~~~-~~~~~~~~~~s~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~h~~ 289 (326)
+.. +++..+. +...+.+++|+|++ ...+++++.|+. +++|+... ......+.+|.+
T Consensus 197 ~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-------------v~iw~~~~~~~~~~~~~~~~~~~~ 263 (316)
T 3bg1_A 197 EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-------------VFIWTCDDASSNTWSPKLLHKFND 263 (316)
T ss_dssp CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-------------EEEEECSSTTCCCCBCCEEEECSS
T ss_pred CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-------------EEEEEccCccccchhhhhhhcCCC
Confidence 754 3444443 45679999999986 234444555542 23343221 001122456889
Q ss_pred ceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 290 PINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 290 ~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.|++++|+|++.+||+|+.||+|+||+...+
T Consensus 264 ~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 264 VVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp CEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 9999999999999999999999999998644
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-39 Score=282.04 Aligned_cols=285 Identities=23% Similarity=0.403 Sum_probs=222.0
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc------------------ceEEEEEcCCCCeEEE
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------------------AVWCCDVSRDSMTLIT 69 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~------------------~V~~~~~~~~~~~l~s 69 (326)
+|...|.+++|||||++|++++ ++++++|+..+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999876 68999999999998888766542 4899999999999999
Q ss_pred EeCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc
Q 020461 70 GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148 (326)
Q Consensus 70 ~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (326)
|+.|++|++||+.+++.+..+. +...+.++.|.+++..++.+.. +..+.+|++. .+.....+. +...
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~v~iwd~~------~~~~~~~~~-~~~~ 208 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDLR------TGQCSLTLS-IEDG 208 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TTEEEEEEE-CSSC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-----CCcEEEEECC------CCeeEEEEE-cCCC
Confidence 9999999999999998877765 4566788888876655544332 2344555443 223333333 4567
Q ss_pred eeEEEEec-CCcEEEEeeCCCcEEEEECCCCccccccc----cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461 149 INRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESD----KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (326)
Q Consensus 149 i~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (326)
+.+++++| ++.+|++|+.|++|++||+++++.+..+. ...+|...|.+++|+|++.+|++|+.|++|++||+++.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999 88999999999999999999887665432 12478999999999999999999999999999999764
Q ss_pred c------------eEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc
Q 020461 224 E------------LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 290 (326)
Q Consensus 224 ~------------~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 290 (326)
. +...+. +...+.+++++|++..+++++. |+ .+++|+...++.+..+.+|.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~-------------~v~iwd~~~~~~~~~l~~h~~~ 354 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DR-------------GVLFWDKKSGNPLLMLQGHRNS 354 (393)
T ss_dssp ------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TS-------------EEEEEETTTCCEEEEEECCSSC
T ss_pred CCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CC-------------eEEEEECCCCeEEEEECCCCCC
Confidence 2 233332 4456889999999887766543 32 2456666666666778899999
Q ss_pred eeEEEECC------CCceEEeecCCCcEEEeecCC
Q 020461 291 INALAFNP------DGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 291 v~~v~~s~------d~~~lat~s~Dg~i~l~~~~~ 319 (326)
|.+++|+| ++.+||||+.||+|+||+++.
T Consensus 355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 355 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99999986 688999999999999999864
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.3e-41 Score=284.29 Aligned_cols=251 Identities=16% Similarity=0.207 Sum_probs=199.7
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC-----------CeeeeccCcccceEEEEEcCCCCeEEEEeCC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-----------ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD 73 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-----------~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d 73 (326)
....|+..|.+++|+|||++|++++ |+++|+||.... ........|...|.+++|+|++ .|++|+.|
T Consensus 25 ~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d 102 (344)
T 4gqb_B 25 APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS 102 (344)
T ss_dssp SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT
T ss_pred CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC
Confidence 3446778899999999999999887 778898873211 1111223456789999999985 68899999
Q ss_pred CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461 74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (326)
Q Consensus 74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (326)
|+|++||+++++..... .....+|.+.|++++
T Consensus 103 g~v~lWd~~~~~~~~~~------------------------------------------------~~~~~~H~~~V~~v~ 134 (344)
T 4gqb_B 103 GAVELWELDENETLIVS------------------------------------------------KFCKYEHDDIVSTVS 134 (344)
T ss_dssp SEEEEEEECTTSSCEEE------------------------------------------------EEEEECCSSCEEEEE
T ss_pred CEEEEEeccCCCceeEe------------------------------------------------eccccCCCCCEEEEE
Confidence 99999999877543211 122357889999999
Q ss_pred EecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCcceEEEEe--
Q 020461 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYV-- 230 (326)
Q Consensus 154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~-- 230 (326)
|+|++++|++|+.|++|++||+++++.+..+ .+|...|.+++|++++. +|++|+.|++|++||++++++...+.
T Consensus 135 ~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~---~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 211 (344)
T 4gqb_B 135 VLSSGTQAVSGSKDICIKVWDLAQQVVLSSY---RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS 211 (344)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence 9999999999999999999999998877655 47999999999999885 68999999999999999999888764
Q ss_pred -eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC-ceEEeecC
Q 020461 231 -TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGE 308 (326)
Q Consensus 231 -~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~-~~lat~s~ 308 (326)
....+.+++++|.+..++++++.|+ .+++|+....+.+..+.+|...|++++|+|++ ++||+||.
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg-------------~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~ 278 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENG-------------TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE 278 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTS-------------EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET
T ss_pred eeeccceeeeecCCCCcceEEeccCC-------------cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC
Confidence 2346889999998877776666554 24556665666667788999999999999998 57999999
Q ss_pred CCcEEEeecCCCc
Q 020461 309 DGYVRLHHFDPDY 321 (326)
Q Consensus 309 Dg~i~l~~~~~~~ 321 (326)
|++|+||+.....
T Consensus 279 D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 279 DCSLAVLDSSLSE 291 (344)
T ss_dssp TSCEEEECTTCCE
T ss_pred CCeEEEEECCCCc
Confidence 9999999987543
No 23
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-39 Score=301.64 Aligned_cols=298 Identities=21% Similarity=0.298 Sum_probs=225.7
Q ss_pred eeeeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCC-----CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461 4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNG-----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~-----~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~ 77 (326)
..+++|.+.|++++|+|++ ++|+|||.|++|++|++.+. .....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3588999999999999875 79999999999999998754 34567889999999999999999999999999999
Q ss_pred EEEccCCcEEEEEe-cCCCcceeeeecCCeEEEE-EcCccceeceeeeeeeeccCCCCCCCceEEE---eccCccceeEE
Q 020461 78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLI---LKGPQGRINRA 152 (326)
Q Consensus 78 ~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~ 152 (326)
+||+.+++....+. +...+.++.+++++..++. +.+. .+.+|+... ...... ..+|...|.++
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~------~~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR------TIKLWNTLG------ECKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTS------CEEEEECSSTTSCSSCEEEE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC------EEEEEECCC------CcceeeccCCCCCCCcEEEE
Confidence 99999998877765 4567888889886654443 3333 334443211 111111 14688899999
Q ss_pred EEecCC--cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 153 VWGPLN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 153 ~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
.|+|++ ..+++++.|++|++||+++++....+ .+|...|++++++|++.+|++|+.||+|++||+++++++..+.
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL---AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence 999986 58999999999999999988766544 4799999999999999999999999999999999999988887
Q ss_pred eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee-------eccccccCcceeEEEECCCCceE
Q 020461 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-------IGGVKGHFGPINALAFNPDGKSF 303 (326)
Q Consensus 231 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~v~~s~d~~~l 303 (326)
....+.+++|+|++..++.+. .+. +..+|.+.+.....+........ ......+.-.+++++|||||++|
T Consensus 601 ~~~~v~~~~~sp~~~~l~~~~-~~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l 677 (694)
T 3dm0_A 601 ANSVIHALCFSPNRYWLCAAT-EHG--IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL 677 (694)
T ss_dssp CSSCEEEEEECSSSSEEEEEE-TTE--EEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred CCCcEEEEEEcCCCcEEEEEc-CCC--EEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence 778899999999876665443 222 45555554433221111000000 00011222347899999999999
Q ss_pred EeecCCCcEEEeecCC
Q 020461 304 SSGGEDGYVRLHHFDP 319 (326)
Q Consensus 304 at~s~Dg~i~l~~~~~ 319 (326)
++|+.||+|+||++..
T Consensus 678 ~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 678 FSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEETTSEEEEEEC--
T ss_pred EEEcCCCeEEEEeccC
Confidence 9999999999999853
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.7e-39 Score=290.97 Aligned_cols=279 Identities=28% Similarity=0.513 Sum_probs=228.3
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|...|.+++|+|++++|++++.|++|++|+.. +..+..+.+|...|.+++|+|+++++++++.|++|++||..
T Consensus 297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~- 374 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 374 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-
Confidence 4577899999999999999999999999999999975 45567788999999999999999999999999999999964
Q ss_pred CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
++.+..+. +..++.++.++++...++.+.. +..+.+++. .++.+..+.+|...|.+++|+|++++|+
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----d~~v~~~~~-------~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-----DKTVKLWNR-------NGQLLQTLTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSEEEEECT-------TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEEEeC-----CCEEEEEeC-------CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 55555554 4567788888887665544332 123334431 3456778889999999999999999999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeC
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS 241 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s 241 (326)
+++.|++|++||.. ++.+..+ .+|...|++++|+|++.+|++++.|++|++||. ++++++.+. +...+.+++|+
T Consensus 443 ~~~~d~~v~~w~~~-~~~~~~~---~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s 517 (577)
T 2ymu_A 443 SASDDKTVKLWNRN-GQLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 517 (577)
T ss_dssp EEETTSEEEEEETT-SCEEEEE---ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred EEcCCCEEEEEECC-CCEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEc
Confidence 99999999999975 4444433 478999999999999999999999999999995 677777775 45689999999
Q ss_pred CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
|++..+++++. |+ .+++|+. .++.+..+.+|.+.|++++|+|||++|+|++.|++|++|+
T Consensus 518 ~dg~~l~s~~~-dg-------------~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 518 PDGQTIASASD-DK-------------TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TTSSCEEEEET-TS-------------EEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEC-cC-------------EEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99988776543 32 2455653 3455667889999999999999999999999999999996
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.2e-39 Score=277.38 Aligned_cols=296 Identities=16% Similarity=0.224 Sum_probs=223.3
Q ss_pred eeeeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCCCeeeecc--CcccceEEEEEcC-CCCeEEEEeCCCcEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSR-DSMTLITGSADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~--~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~w 79 (326)
..+.+|...|.+++|+|++ ++|++|+.|+.|+||++.+++....+. +|.+.|.+++|+| ++++|++++.|++|++|
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 4577899999999999999 899999999999999999888776665 6999999999999 67899999999999999
Q ss_pred EccCCcEEEEEe-c---CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 80 NVETGAQLFTFN-F---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 80 d~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
|+.+. ....+. . ...+.++.++++...++.+.. +..+.++++ .+..+..+.+|...|.+++|+
T Consensus 147 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~-------~~~~~~~~~~h~~~v~~~~~~ 213 (383)
T 3ei3_B 147 DFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-----TGRLLLLGL-------DGHEIFKEKLHKAKVTHAEFN 213 (383)
T ss_dssp ETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEET-----TSEEEEEET-------TSCEEEEEECSSSCEEEEEEC
T ss_pred ECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECC-----CCCEEEEEC-------CCCEEEEeccCCCcEEEEEEC
Confidence 99864 343333 2 245778888887666555432 234455554 245777888999999999999
Q ss_pred cCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCcceEEEEeec-
Q 020461 156 PLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTE- 232 (326)
Q Consensus 156 ~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 232 (326)
|+++ +|++++.|++|++||+++.+.........+|...|.+++|+| ++.+|++++.|+.|++||+++++....+...
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 9998 999999999999999987432222222236889999999999 9999999999999999999998876665421
Q ss_pred -------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc--cCcceeEEEECCCCceE
Q 020461 233 -------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG--HFGPINALAFNPDGKSF 303 (326)
Q Consensus 233 -------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~s~d~~~l 303 (326)
..+. ..|+|.+..++++...++.... .....+++|+...++.+..+.+ |.+.+..++|+|++++|
T Consensus 294 ~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~-----s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l 367 (383)
T 3ei3_B 294 HRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLL-----NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVL 367 (383)
T ss_dssp BCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCT-----TCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEE
T ss_pred ccccccccceE-EeccCCCCceEEEecCCccccc-----CCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEE
Confidence 1222 3555555554443322222100 0111356677666666666665 56778888999999999
Q ss_pred EeecCCCcEEEeecCC
Q 020461 304 SSGGEDGYVRLHHFDP 319 (326)
Q Consensus 304 at~s~Dg~i~l~~~~~ 319 (326)
|+|+ ||.|+||+++.
T Consensus 368 ~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 368 ASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEE-TTEEEEEECC-
T ss_pred EEec-CCcEEEEecCC
Confidence 9997 99999999875
No 26
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=267.73 Aligned_cols=282 Identities=18% Similarity=0.306 Sum_probs=218.1
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc--CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
+.+|+||+++ +|++| .|++|+|||.++++++..+. +|...|.+++|+|++++|++|+.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5789999875 66655 59999999999999887664 67788999999999999999999999999999999988776
Q ss_pred ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcE
Q 020461 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i 170 (326)
..+... ...+.....+++.+... .....+.. ......+..+.+|...+..+.++++++++++++.|++|
T Consensus 106 ~~h~~~-~~~~~~~~~~l~s~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 174 (318)
T 4ggc_A 106 TSHSAR-VGSLSWNSYILSSGSRS-----GHIHHHDV-----RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 174 (318)
T ss_dssp ECCSSC-EEEEEEETTEEEEEETT-----SEEEEEET-----TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cCccce-EEEeecCCCEEEEEecC-----CceEeeec-----CCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcce
Confidence 543322 22233223333322211 11111111 12234667788999999999999999999999999999
Q ss_pred EEEECCCCccccc-cccccCcceeeEEEEEcCCCCeE---EEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCe
Q 020461 171 RIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHF---LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH 246 (326)
Q Consensus 171 ~~wd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l---~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~ 246 (326)
++||+++++.... ......|...|.++.+++++..+ ++++.+++|++||.+.............+..+.++|.++.
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 254 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTE
T ss_pred eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccc
Confidence 9999988765332 22234577889999999887654 4677899999999999998888888888999999999998
Q ss_pred eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
++++++.... .+++|+...++.+..+.+|.++|++++|+|||++|||||.||+|+||++.+
T Consensus 255 ~~~~sg~~d~------------~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 255 LISGHGFAQN------------QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEEECTTTC------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eEEEEEcCCC------------EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 8876543222 245666666677778899999999999999999999999999999999753
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=278.23 Aligned_cols=291 Identities=19% Similarity=0.281 Sum_probs=231.0
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 88 (326)
|...|.+++|+|++++|++++.|+.|++|+ .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 788999999999999999999999999999 7788889999999999999999999999999999999999999998877
Q ss_pred EEecCCC----------------cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461 89 TFNFDSP----------------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (326)
Q Consensus 89 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (326)
.+..... +..+.+.++..+++...+. .+.++.+. .+.....+.+|...|.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~i~~~d~~------~~~~~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG------AIFVYQIT------EKTPTGKLIGHHGPISVL 253 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGG------CEEEEETT------CSSCSEEECCCSSCEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCC------eEEEEEcC------CCceeeeeccCCCceEEE
Confidence 7654332 5667777777766554443 33344332 234556677899999999
Q ss_pred EEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-
Q 020461 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT- 231 (326)
Q Consensus 153 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~- 231 (326)
+|+|++++|++++.|+.|++||+++++....+ .+|...+.+++++|++ ++++++.|+.|++||+++++++..+..
T Consensus 254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 329 (425)
T 1r5m_A 254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF---YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD 329 (425)
T ss_dssp EEETTTTEEEEEETTSCEEEECSSSBSCSEEE---CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCccceEe---cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence 99999999999999999999999988766554 3688899999999999 999999999999999999998888764
Q ss_pred ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeee--------EeecccceeeeccccccCc--ceeEEEECCCCc
Q 020461 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA--------KFFDKILQEEIGGVKGHFG--PINALAFNPDGK 301 (326)
Q Consensus 232 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--------~~~~~~~~~~~~~~~~h~~--~v~~v~~s~d~~ 301 (326)
...+.+++++|++..+++++.+.. +..+|.+.+.... ..+.......+..+.+|.. .|++++|+|+++
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQ--VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSC--EEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred CccEEEEEEcCCCCEEEEEECCCe--EEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence 568999999999988777654332 2233322211000 0000001114566778876 999999999999
Q ss_pred eEEeecCCCcEEEeecC
Q 020461 302 SFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 302 ~lat~s~Dg~i~l~~~~ 318 (326)
+||+++.||.|++|+++
T Consensus 408 ~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 408 KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEESSSCCEEEECC
T ss_pred eEEEEecCceEEEEeec
Confidence 99999999999999986
No 28
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.1e-38 Score=275.94 Aligned_cols=282 Identities=19% Similarity=0.320 Sum_probs=220.0
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc--CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
.+..|+||++ ++|++| .|++|+|||..+++++..+. +|...|++++|+|++++|++|+.|++|++||+++++.+..
T Consensus 107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3578999975 577765 58999999999999877654 6778899999999999999999999999999999988877
Q ss_pred EecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461 90 FNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (326)
Q Consensus 90 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~ 168 (326)
+..+ ..+.++.+. +..++..+.+. .+..+... .....+..+.+|...+..+.++|++.++++++.|+
T Consensus 185 ~~~h~~~v~~~s~~-~~~l~sgs~d~------~i~~~d~~-----~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 185 MTSHSARVGSLSWN-SYILSSGSRSG------HIHHHDVR-----VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp ECCCSSCEEEEEEE-TTEEEEEETTS------EEEEEETT-----SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeCCCCceEEEeeC-CCEEEEEeCCC------ceeEeeec-----ccceeeEEecccccceeeeeecCCCCeeeeeeccc
Confidence 6543 333333332 22333222222 22222221 12345677889999999999999999999999999
Q ss_pred cEEEEECCCCcccc-ccccccCcceeeEEEEEcCCCCeE-EE--EeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCC
Q 020461 169 IVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHF-LT--GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244 (326)
Q Consensus 169 ~i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l-~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~ 244 (326)
.|++||..+++... .+.....|...|.+++++|++..+ ++ |+.|++|++||+++++++..+.....+.++.+++++
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~ 332 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY 332 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTT
T ss_pred cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCC
Confidence 99999998765432 222345688899999999976544 43 468999999999999999999888899999999999
Q ss_pred CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+.++++.+.... .+++|+....+.+..+.+|.++|++++|+|||++|||||.||+||||++.+
T Consensus 333 ~~lv~~sg~~d~------------~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 333 KELISGHGFAQN------------QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp TEEEEEECTTTC------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CeEEEEEecCCC------------EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 998877553322 245666666677778899999999999999999999999999999999864
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.2e-38 Score=285.10 Aligned_cols=284 Identities=26% Similarity=0.466 Sum_probs=230.2
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|...|.+++|+|++++|++++.|+++++|+. +++.+..+.+|...|.+++|+|+++.+++++.|++|++||...
T Consensus 256 ~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~ 334 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 457789999999999999999999999999999995 5677888999999999999999999999999999999999876
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
........+..++.++.++++...++.+.. +..+.++.. .++.+..+.+|...|.+++|+|++++|++
T Consensus 335 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~v~~~~~-------~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASD-----DKTVKLWNR-------NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEET-------TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CeeEEEeCCCCCEEEEEECCCCCEEEEEeC-----CCEEEEEcC-------CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 554433344566777888887665554432 122333331 24567778899999999999999999999
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~ 242 (326)
++.|+.|++||.. ++.+..+ .+|...|++++++|++.+|++++.|++|++||.. ++.+..+. +...+.+++|+|
T Consensus 403 ~~~d~~v~~~~~~-~~~~~~~---~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~sp 477 (577)
T 2ymu_A 403 ASDDKTVKLWNRN-GQLLQTL---TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP 477 (577)
T ss_dssp EETTSEEEEECTT-CCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECT
T ss_pred EeCCCEEEEEeCC-CCEEEEe---cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcC
Confidence 9999999999964 4444433 4789999999999999999999999999999974 55666654 567899999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
++..+++++.+. .+++|+. .++.+..+.+|...|++++|+|||++||+++.||.|+||+.+.+
T Consensus 478 d~~~las~~~d~--------------~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~ 540 (577)
T 2ymu_A 478 DGQTIASASDDK--------------TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 540 (577)
T ss_dssp TSCEEEEEETTS--------------EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC
T ss_pred CCCEEEEEeCCC--------------EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCC
Confidence 998877664332 2445553 34455667899999999999999999999999999999997644
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.7e-39 Score=279.34 Aligned_cols=292 Identities=14% Similarity=0.095 Sum_probs=227.6
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC------eeeeccCcccceEEEEEcCC----C---CeEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRD----S---MTLITG 70 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~------~~~~~~~h~~~V~~~~~~~~----~---~~l~s~ 70 (326)
..+++|.+.|.+++|+| ++|++|+.|++|++|++.+++ .+..+.+|...|.+++|+|+ + ++|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 46779999999999999 899999999999999999988 78888999999999999999 9 999999
Q ss_pred eCCCcEEEEEccCCcE-----EEEEecC------CCcceeeee----cCCeE-EEEE-cCccceeceeeeeeeecc----
Q 020461 71 SADQTAKLWNVETGAQ-----LFTFNFD------SPARSVDFA----VGDKL-AVIT-TDPFMELNSAIHVKRIAR---- 129 (326)
Q Consensus 71 ~~d~~i~~wd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~-~~~~-~~~~~~~~~~~~~~~~~~---- 129 (326)
+.|+.|++||+.+++. ...+... ..+.++.+. ++... ++++ .+. .+.+|++..
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG------TTYIWKFHPFADE 161 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS------CEEEEEEESSSSH
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC------cEEEEeCCccccc
Confidence 9999999999998875 5555433 678888898 76655 4443 333 334444432
Q ss_pred --CCCCCCCceEEEe-------ccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCc---ceeeEEE
Q 020461 130 --DPADQGGESVLIL-------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH---KKTITSL 197 (326)
Q Consensus 130 --~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h---~~~v~~v 197 (326)
..... -.+...+ ..|...|.+++|+|++ .+++++.|+.|++||+++++.+..+....+| ...+.++
T Consensus 162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 162 SNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp HHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred cccceee-ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence 11000 0111133 4578899999999999 9999999999999999988776655432237 8899999
Q ss_pred EEcCCCCeEEEEeCC---CeEEEeecCCcceEEEEe--------------eccceEEEEeCCCCCeeEEecCCCcceeEe
Q 020461 198 AKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV--------------TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260 (326)
Q Consensus 198 ~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~--------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 260 (326)
+|+|++.+|++++.| +.|++||+++++++..+. +...+.+++|+|++..+++++.+. .+
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i-- 315 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG--KL-- 315 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS--EE--
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC--eE--
Confidence 999999999999999 999999999999988886 456899999999998877665433 23
Q ss_pred ecccCceeeeEeecccceeeecccc------cc---------------CcceeEEEECCCC----------ceEEeecCC
Q 020461 261 TDHRAGKFEAKFFDKILQEEIGGVK------GH---------------FGPINALAFNPDG----------KSFSSGGED 309 (326)
Q Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~------~h---------------~~~v~~v~~s~d~----------~~lat~s~D 309 (326)
++|+....+.+..+. +| ..+|++++|+|++ .+|++|+.|
T Consensus 316 ----------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 316 ----------RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp ----------EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred ----------EEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC
Confidence 334433333334444 55 8999999999998 799999999
Q ss_pred CcEEEeecCC
Q 020461 310 GYVRLHHFDP 319 (326)
Q Consensus 310 g~i~l~~~~~ 319 (326)
|.|++|+++.
T Consensus 386 g~i~iw~~~~ 395 (397)
T 1sq9_A 386 RSIRWFREAG 395 (397)
T ss_dssp TEEEEEEEEC
T ss_pred CcEEEEEcCC
Confidence 9999999864
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-38 Score=272.49 Aligned_cols=303 Identities=20% Similarity=0.236 Sum_probs=228.5
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd 80 (326)
|.++..|..+|.+++|+|++++|++++.|+.|++|+..+++ .+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 1 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp -CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CceecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 45778899999999999999999999999999999999987 8889999999999999999999999999999999999
Q ss_pred ccCCcEEEEE---ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 81 VETGAQLFTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+.+++..... .+...+.++.+.+++..++++.. +..+.++.+..... .........+|...|.++.|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-----SRVISICYFEQEND--WWVCKHIKKPIRSTVLSLDWHPN 153 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-----TSSEEEEEEETTTT--EEEEEEECTTCCSCEEEEEECTT
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCEEEEEEecCCCc--ceeeeeeecccCCCeeEEEEcCC
Confidence 9888755443 24566778888877665554432 12334444432110 00122334678899999999999
Q ss_pred CcEEEEeeCCCcEEEEECC------------------CCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461 158 NRTIISAGEDAIVRIWDTE------------------TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~------------------~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd 219 (326)
+.+|++++.|+.|++||++ .++.+..+ .+|...+.+++++|++.+|++++.|+.|++||
T Consensus 154 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 154 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---SSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---CCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec---CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 9999999999999999964 34443333 36888999999999999999999999999999
Q ss_pred cCCcceEEEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccC--ceeee------------------Eee---cc
Q 020461 220 ARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA--GKFEA------------------KFF---DK 275 (326)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~------------------~~~---~~ 275 (326)
+++++++..+.. ..++.+++|+|++..++++ .++. +..++.+. +.+.. +.| +.
T Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (372)
T 1k8k_C 231 ADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF--PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 307 (372)
T ss_dssp GGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS--CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred CCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe--EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence 999999888864 4589999999988765554 3333 23344333 22111 011 10
Q ss_pred cceeee------ccc-cccCcceeEEEEC-CCC---ceEEeecCCCcEEEeecCC
Q 020461 276 ILQEEI------GGV-KGHFGPINALAFN-PDG---KSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 276 ~~~~~~------~~~-~~h~~~v~~v~~s-~d~---~~lat~s~Dg~i~l~~~~~ 319 (326)
.+... ..+ .+|.++|++++|+ ++| .+|+||+.||.|++|+++.
T Consensus 308 -~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 308 -KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp -CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred -ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 01111 222 4899999999966 777 9999999999999999864
No 32
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.7e-37 Score=262.65 Aligned_cols=283 Identities=14% Similarity=0.178 Sum_probs=224.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec---c--CcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---R--GHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~---~--~h~~~V~~~~~~~~~~~l~s~~~d~~i~~ 78 (326)
....+|...|.+++|+|++++|++++ |+.|++|++.++.....+ . +|...|.+++|+|++++|++++.|+.|++
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 44568999999999999999999998 999999999887643333 2 78999999999999999999999999999
Q ss_pred EEccCCcE--EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 79 WNVETGAQ--LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 79 wd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
||+.+++. ...+. +...+..+.+.++...++++.. +..+.++++. .++....+.+|...+.++.|+
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v~~~d~~------~~~~~~~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-----DGNIAVWDLH------NQTLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCEEEEEEC
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC-----CCcEEEEeCC------CCceeeeeecccCceEEEEEC
Confidence 99998773 33333 3455677788876655544432 1234444432 345677788899999999999
Q ss_pred cCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccce
Q 020461 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV 235 (326)
Q Consensus 156 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 235 (326)
|+++.|++++.|+.|++||+++++..... .|...+.+++++|++.++++++.|+.|++||+++++......+...+
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v 268 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCE
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEeee----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccce
Confidence 99999999999999999999988766544 36678999999999999999999999999999998876555567789
Q ss_pred EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
.+++++|+++.+++++.+. .+++|+....+... ...|...|.+++|+|++++|++++.||.|++|
T Consensus 269 ~~~~~~~~~~~l~~~~~dg--------------~i~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDN--------------LLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp EEEEECTTSSEEEEEETTS--------------EEEEEETTTCCEEE-EEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred eEEEECCCCCEEEEecCCC--------------cEEEEECCCCeEEE-EecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 9999999998877665432 23344433333321 23578899999999999999999999999999
Q ss_pred ec
Q 020461 316 HF 317 (326)
Q Consensus 316 ~~ 317 (326)
++
T Consensus 334 ~~ 335 (337)
T 1gxr_A 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 33
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-39 Score=279.79 Aligned_cols=304 Identities=15% Similarity=0.142 Sum_probs=213.9
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd 80 (326)
|.+++.|..+|.+++|+|++++|++|+.|+.|++|++.++ +.+..+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus 4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 4567778899999999999999999999999999999988 78889999999999999999999999999999999999
Q ss_pred ccCCc---EEEEE-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc-CccceeEEEEe
Q 020461 81 VETGA---QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWG 155 (326)
Q Consensus 81 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 155 (326)
+.+++ ....+ .+...+.++.++++...++.+.. +..+.++++.... .......+.+ |...|.+++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~---~~~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-----ARVISVCYFEQEN---DWWVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEES-----SSCEEECCC--------CCCCEEECSSCCSCEEEEEEC
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec-----CCeEEEEEECCcc---cceeeeEeecccCCCeEEEEEc
Confidence 99876 33333 35567788888876654444332 1233444332210 0113455666 99999999999
Q ss_pred cCCcEEEEeeCCCcEEEEECCCCccc--------------c-ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 156 PLNRTIISAGEDAIVRIWDTETGKLL--------------K-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 156 ~~~~~l~s~~~d~~i~~wd~~~~~~~--------------~-~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
|++++|++++.|++|++||++..+.. . ..... +|...|.+++|+|++.+|++++.|++|++||+
T Consensus 156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 99999999999999999998632210 0 11112 78899999999999999999999999999999
Q ss_pred CCcce----EEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc------------------
Q 020461 221 RTLEL----IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL------------------ 277 (326)
Q Consensus 221 ~~~~~----~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------ 277 (326)
+++++ +..+. +...+.+++|+|++..++++ +.+...+...+.....+ ....+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG-YNYSPILLQGNESGWAH-TRDLDAGTSKTSFTHTGNTGEGREEE 312 (377)
T ss_dssp CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE-SSSSEEEECCCC---CC-SBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE-cCCcEEEEEeCCCceEE-Eeeecccccccccccccccccccccc
Confidence 99887 55554 34579999999998766554 44444332221100000 00000000
Q ss_pred ---------------------eeeeccccccCcceeEEEECCCC-c---eEEeecCCCcEEEeec
Q 020461 278 ---------------------QEEIGGVKGHFGPINALAFNPDG-K---SFSSGGEDGYVRLHHF 317 (326)
Q Consensus 278 ---------------------~~~~~~~~~h~~~v~~v~~s~d~-~---~lat~s~Dg~i~l~~~ 317 (326)
.........|.+.|+++++.++. . .|+||+.||.|+||++
T Consensus 313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00111223499999999976543 3 6999999999999985
No 34
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=267.87 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=223.2
Q ss_pred eeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeecc-------------CcccceEEEEEcC-CCCeEE
Q 020461 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYR-------------GHNGAVWCCDVSR-DSMTLI 68 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~-------------~h~~~V~~~~~~~-~~~~l~ 68 (326)
.++++|.+.|.+++|+| ++++|++|+.||.|++|++.+++....+. +|...|.+++|+| ++++|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 56788999999999999 99999999999999999999887665543 6999999999999 778999
Q ss_pred EEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCC---eEEEE-EcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD---KLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 69 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
+++.|+.|++||+.+++....+.....+..+.+.+.. .++++ ..+. .+.++++. .+.....+.+
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~------~~~~~~~~~~ 184 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLK------SGSCSHILQG 184 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS------SEEEEESS------SSCCCEEECC
T ss_pred EEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCC------CcceeeeecC
Confidence 9999999999999999988888877777777776532 23333 3332 33444432 2345667788
Q ss_pred CccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCcc-cccc------------ccccCcceeeEEEEEcCCCCeEEEEe
Q 020461 145 PQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKL-LKES------------DKETGHKKTITSLAKAADGSHFLTGS 210 (326)
Q Consensus 145 ~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~-~~~~------------~~~~~h~~~v~~v~~s~~~~~l~s~s 210 (326)
|...|.+++|+|++. .+++++.|+.|++||+++++. ...+ ....+|...|.+++|+|++.+|++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 999999999999998 588999999999999976642 1111 11246889999999999999999999
Q ss_pred CCCeEEEeecCCcceEEEEeec------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc
Q 020461 211 LDKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV 284 (326)
Q Consensus 211 ~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 284 (326)
.||.|++||+++++........ ..............+++++. ++ .+++|+....+.+..+
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~i~v~d~~~~~~~~~~ 330 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY-GS-------------TIAVYTVYSGEQITML 330 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE-TT-------------EEEEEETTTCCEEEEE
T ss_pred CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec-CC-------------EEEEEECcCCcceeee
Confidence 9999999999988765443211 11111111122222222221 11 3566777667777788
Q ss_pred cccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 285 KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 285 ~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.+|.+.|++++|+|++++|++|+.||.|++|+++..
T Consensus 331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 899999999999999999999999999999999765
No 35
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-38 Score=275.08 Aligned_cols=303 Identities=14% Similarity=0.216 Sum_probs=226.2
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC----CCeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEE
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAK 77 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~ 77 (326)
+.....|...|.+++|+|++++|++++.|+.|++|++.+ .+.+..+.+|.+.|.+++|+|+ +++|++++.|++|+
T Consensus 60 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 60 PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 334456889999999999999999999999999999987 4578889999999999999998 88999999999999
Q ss_pred EEEccCCc------EEEEE----ecCCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC-
Q 020461 78 LWNVETGA------QLFTF----NFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP- 145 (326)
Q Consensus 78 ~wd~~~~~------~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (326)
+||+.+++ ..... .+...+.++.+.++ ..+++.+.. +..+.++++. .+.....+..+
T Consensus 140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~iwd~~------~~~~~~~~~~~~ 208 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-----SNFASIWDLK------AKKEVIHLSYTS 208 (416)
T ss_dssp BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-----SSCEEEEETT------TTEEEEEECCCC
T ss_pred EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-----CCCEEEEECC------CCCcceEEeccc
Confidence 99998876 33222 24456778888876 444444332 1234444432 23445555554
Q ss_pred -----ccceeEEEEecCC-cEEEEeeCCC---cEEEEECCCCc-ccccccccc-CcceeeEEEEEcC-CCCeEEEEeCCC
Q 020461 146 -----QGRINRAVWGPLN-RTIISAGEDA---IVRIWDTETGK-LLKESDKET-GHKKTITSLAKAA-DGSHFLTGSLDK 213 (326)
Q Consensus 146 -----~~~i~~~~~~~~~-~~l~s~~~d~---~i~~wd~~~~~-~~~~~~~~~-~h~~~v~~v~~s~-~~~~l~s~s~dg 213 (326)
...|.+++|+|++ .++++++.|+ .|++||+++++ .... .. +|...|.+++|+| ++.+|++++.|+
T Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT---LNQGHQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC---CCSCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE---eecCccCceeEEEeCCCCCCeEEEEeCCC
Confidence 7889999999997 5899999998 99999998863 3332 23 6889999999999 999999999999
Q ss_pred eEEEeecCCcceEEEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeE--------------eecccc-
Q 020461 214 SAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK--------------FFDKIL- 277 (326)
Q Consensus 214 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------------~~~~~~- 277 (326)
+|++||+++++++..+.. ...+.+++|+|++..++++++.|+. +..+|......... +|....
T Consensus 286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (416)
T 2pm9_A 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK-IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSR 364 (416)
T ss_dssp EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE-EEEEESCCCCCSSCC--------------------
T ss_pred CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc-EEEEEccCCCCCcccccccccccCCcccccccccc
Confidence 999999999999888864 5679999999998555555555543 33444332221110 010000
Q ss_pred ---ee-----eeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 278 ---QE-----EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 278 ---~~-----~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.. .+.....|..++.+++|+|||++||+|+.||+|+||++..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 365 EESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp --CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 00 00112237788899999999999999999999999998865
No 36
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-38 Score=276.97 Aligned_cols=293 Identities=13% Similarity=0.159 Sum_probs=206.7
Q ss_pred eecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCC---CCe---eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN---GER---LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (326)
Q Consensus 7 ~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~---~~~---~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w 79 (326)
.+|.+.|.+++|+| ++++|++|+.|++|+||++.+ +.. ...+ +|.+.|.+++|+|++++|++++.|++|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 78999999999999 999999999999999999876 432 2222 589999999999999999999999999999
Q ss_pred Ecc---CCcEEEEEecC-------------CCcceee--eecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE
Q 020461 80 NVE---TGAQLFTFNFD-------------SPARSVD--FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (326)
Q Consensus 80 d~~---~~~~~~~~~~~-------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (326)
|+. +++........ ..+.++. +.++...++++.. +..+.+|++. .+..+..
T Consensus 139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~------~~~~~~~ 207 (437)
T 3gre_A 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN-----LSRVIIFDIR------TLERLQI 207 (437)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET-----TSEEEEEETT------TCCEEEE
T ss_pred EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC-----CCeEEEEeCC------CCeeeEE
Confidence 995 55544332211 1122222 1233333333322 2344555442 3456777
Q ss_pred ecc--CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE----cCCCCeEEEEeCCCeE
Q 020461 142 LKG--PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK----AADGSHFLTGSLDKSA 215 (326)
Q Consensus 142 ~~~--~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~----s~~~~~l~s~s~dg~i 215 (326)
+.+ |.+.|++++|+|++.+|++|+.|++|++||+++++.+..+. .+|...|.++++ ++++.+|++|+.||+|
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS--FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB--CTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe--cCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 777 88999999999999999999999999999999887766543 257789999955 4578899999999999
Q ss_pred EEeecCCcceEEEEe---------------------------eccceEEEEeCCCCCeeEEecCCCcceeEeecccCcee
Q 020461 216 KLWDARTLELIKTYV---------------------------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268 (326)
Q Consensus 216 ~iwd~~~~~~~~~~~---------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~ 268 (326)
++||+++++++..+. +...+.+++++ ++..+++ ++.|+ .+..||.+.+..
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s-~~~d~-~i~~wd~~~~~~ 362 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT-DEATS-SIVMFSLNELSS 362 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE-EGGGT-EEEEEETTCGGG
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe-cCCCC-eEEEEECCCccc
Confidence 999999999888776 22346778888 4444444 44443 244555444332
Q ss_pred eeEeec-------------------------ccceeeeccccccCcceeEEEECCC--CceEEeecCCCcEEEee
Q 020461 269 EAKFFD-------------------------KILQEEIGGVKGHFGPINALAFNPD--GKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 269 ~~~~~~-------------------------~~~~~~~~~~~~h~~~v~~v~~s~d--~~~lat~s~Dg~i~l~~ 316 (326)
...+.. ............|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 211111 1111112223459999999999988 88999999999999996
No 37
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=255.21 Aligned_cols=282 Identities=20% Similarity=0.231 Sum_probs=225.8
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|.+.|.+++| |++++|++++.||.|++|++.+++....+..|.+.|.+++|+|+++++++++.|+.|++|++..
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence 568999999999999 9999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C---cEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CC
Q 020461 84 G---AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LN 158 (326)
Q Consensus 84 ~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 158 (326)
. +....+. +..++.++.+ .++.++..+.+.. +.+++ .......+..|...+.++.+.| ++
T Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~------i~~~d--------~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 91 TSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKT------AKVWK--------EGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp CTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSE------EEEEE--------TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred cCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCC------EEEEc--------CCcEEEecccCCCceeEEEEccCCC
Confidence 4 3333332 3455666666 3445554444432 33333 2356677888999999999988 88
Q ss_pred cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEE
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (326)
..+++++.|+.|++||.. +....+. ..|...+.+++++|++. +++++.||.|++||+++++++..+. +...+.+
T Consensus 156 ~~l~~~~~d~~i~i~d~~--~~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 230 (313)
T 3odt_A 156 NKFLTASADKTIKLWQND--KVIKTFS--GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC 230 (313)
T ss_dssp TEEEEEETTSCEEEEETT--EEEEEEC--SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CEEEEEECCCCEEEEecC--ceEEEEe--ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEE
Confidence 999999999999999943 3333322 23788999999999998 9999999999999999999998886 5678999
Q ss_pred EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
++++|++ .++++ +.++ .+++|+....+....+..|...|.+++|+|+++ +++++.||.|++|++
T Consensus 231 ~~~~~~~-~l~~~-~~dg-------------~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 231 IKLLPNG-DIVSC-GEDR-------------TVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEECTTS-CEEEE-ETTS-------------EEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred EEEecCC-CEEEE-ecCC-------------EEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 9999998 44444 3333 245566555666666778989999999999998 667999999999999
Q ss_pred CCCce
Q 020461 318 DPDYF 322 (326)
Q Consensus 318 ~~~~~ 322 (326)
+..-.
T Consensus 295 ~~~~~ 299 (313)
T 3odt_A 295 EKSRW 299 (313)
T ss_dssp CGGGC
T ss_pred CCCce
Confidence 87543
No 38
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-37 Score=265.83 Aligned_cols=256 Identities=18% Similarity=0.252 Sum_probs=202.9
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecC--CCCeeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~--~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~~w 79 (326)
.++++|...|.+++|+|++++|++|+.|+.|+||++. +++.+..+.+|.+.|.+++|+++ +++|++++.|++|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 6789999999999999999999999999999999998 55777889999999999999977 8999999999999999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-- 157 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 157 (326)
|+.+++.. ....+.+|...|.+++|+|+
T Consensus 85 d~~~~~~~--------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~ 114 (379)
T 3jrp_A 85 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY 114 (379)
T ss_dssp EEETTEEE--------------------------------------------------EEEEECCCSSCEEEEEECCGGG
T ss_pred EcCCCcee--------------------------------------------------EeeeecCCCcceEEEEeCCCCC
Confidence 98765421 12223457788999999999
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-------------CCCeEEEEeCCCeEEEeecCCcc
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-------------DGSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------~~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
+.+|++++.|+.|++||++++...... ...+|...|.+++|+| ++.+|++++.|+.|++||+++++
T Consensus 115 ~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 115 GPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp CSEEEEEETTSEEEEEECCTTSCCCEE-EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred CCEEEEecCCCcEEEEecCCCCceeeE-EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence 899999999999999999877443322 2346889999999999 69999999999999999998765
Q ss_pred eE----EEEe-eccceEEEEeCCC---CCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE
Q 020461 225 LI----KTYV-TERPVNAVTMSPL---LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296 (326)
Q Consensus 225 ~~----~~~~-~~~~~~~~~~s~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 296 (326)
.. ..+. +...+.+++|+|+ +..+++++ .|+. +..+|.+.+.. .....+.....|...|++++|
T Consensus 194 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~dg~-i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~ 264 (379)
T 3jrp_A 194 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS-QDRT-CIIWTQDNEQG-------PWKKTLLKEEKFPDVLWRASW 264 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE-TTSC-EEEEEESSTTS-------CCEEEESSSSCCSSCEEEEEE
T ss_pred cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe-CCCE-EEEEeCCCCCc-------cceeeeeccccCCCcEEEEEE
Confidence 33 3332 4567999999999 55555544 3332 22333222110 001223334558889999999
Q ss_pred CCCCceEEeecCCCcEEEeecCC
Q 020461 297 NPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 297 s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+|++++|++++.||.|++|+++.
T Consensus 265 s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 265 SLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CSSSCCEEEEESSSSEEEEEEEE
T ss_pred cCCCCEEEEecCCCcEEEEeCCC
Confidence 99999999999999999999874
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-36 Score=264.44 Aligned_cols=289 Identities=18% Similarity=0.240 Sum_probs=224.3
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
+|...+.+.+++++++.+++++.|+.|++|+..+++....+.. |...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 168 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK 168 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE
Confidence 5555544433444456688899999999999999998877766 888999999999999999999999999999999988
Q ss_pred EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
+..+. +...+.++.+ .+..++..+.+. .+.++++.. .......+.+|.+.|.++.|+|++.+|++|+
T Consensus 169 ~~~~~~~~~~v~~~~~-~~~~l~~~~~dg------~i~i~d~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 169 LRTMAGHQARVGCLSW-NRHVLSSGSRSG------AIHHHDVRI-----ANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EEEECCCSSCEEEEEE-ETTEEEEEETTS------EEEEEETTS-----SSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEecCCCCceEEEEE-CCCEEEEEcCCC------CEEEEeccc-----CcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 87775 3455666666 344444444332 344454431 2356777889999999999999999999999
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe-EEEEe--CCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~ 242 (326)
.|+.|++||+++++....+ .+|...|.+++|+|++.. +++|+ .|+.|++||+++++++..+.....+.+++|+|
T Consensus 237 ~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~ 313 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTK---TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP 313 (401)
T ss_dssp TTSCEEEEETTCSSEEEEE---CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS
T ss_pred CCCeEEEccCCCCCccEEe---cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC
Confidence 9999999999987766544 368889999999997755 55544 79999999999999999998888999999999
Q ss_pred CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
++..++++.+.....+..+|.+.+. ......+.+|.+.|.+++|+|++.+|++++.||.|++|++....
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~----------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSG----------LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTE----------EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred CCCeEEEEeecCCCcEEEEecCCcc----------ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 9999888754333333333322211 22233456899999999999999999999999999999998654
No 40
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.1e-37 Score=255.22 Aligned_cols=252 Identities=23% Similarity=0.358 Sum_probs=202.2
Q ss_pred CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceecee
Q 020461 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSA 121 (326)
Q Consensus 43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
+...++++|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+.. ..++..+.+.++...++.+.. +..
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-----d~~ 78 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-----DFR 78 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-----TSE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC-----CCE
Confidence 34567899999999999999999999999999999999999988877764 566788888876665554432 234
Q ss_pred eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 201 (326)
+.+|++. .++.+..+++|...|.+++|+|++++|++|+.|++|++||++++..... ...+|...|.+++|+|
T Consensus 79 i~vwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 79 IRVFNYN------TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--TFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EEEEETT------TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE--EECCCCSCEEEEEECT
T ss_pred EEEEECC------CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh--hhcccCCcEEEEEECC
Confidence 5555542 3567788899999999999999999999999999999999987644322 2347999999999999
Q ss_pred -CCCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCC-eeEEecCCCcceeEeecccCceeeeEeecccc
Q 020461 202 -DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 277 (326)
Q Consensus 202 -~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 277 (326)
++..|++|+.|++|++||+++......+. ....+..+.++|..+ ..+++++.|+ .+++|+...
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-------------~i~iWd~~~ 217 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-------------TIKIWDYQT 217 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS-------------EEEEEETTT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC-------------eEEEEeCCC
Confidence 67899999999999999998877666654 235688899987533 2344444443 356677666
Q ss_pred eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 278 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 278 ~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
++.+..+.+|...|.+++|+|++.+||+|+.||+|+||+....
T Consensus 218 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 6667778899999999999999999999999999999998754
No 41
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-36 Score=258.34 Aligned_cols=273 Identities=18% Similarity=0.291 Sum_probs=211.9
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcC--CCCeEEEEeCCCcEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~ 77 (326)
.++.+|.+.|++++|+|++++|++|+.|+.|++|++.++ +....+.+|.+.|.+++|+| ++++|++++.|++|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 577899999999999999999999999999999999876 45677889999999999999 689999999999999
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+||+++++... . .........+.+|...|.+++|+|+
T Consensus 85 vwd~~~~~~~~------~-------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~ 121 (351)
T 3f3f_A 85 LWEEDPDQEEC------S-------------------------------------GRRWNKLCTLNDSKGSLYSVKFAPA 121 (351)
T ss_dssp EEEECTTSCTT------S-------------------------------------SCSEEEEEEECCCSSCEEEEEECCG
T ss_pred EEecCCCcccc------c-------------------------------------ccCcceeeeecccCCceeEEEEcCC
Confidence 99997754200 0 0001234455678899999999999
Q ss_pred --CcEEEEeeCCCcEEEEECCCCcccccccc----------ccCcceeeEEEEEcCC---CCeEEEEeCCCeEEEeecCC
Q 020461 158 --NRTIISAGEDAIVRIWDTETGKLLKESDK----------ETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 158 --~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----------~~~h~~~v~~v~~s~~---~~~l~s~s~dg~i~iwd~~~ 222 (326)
+.+|++++.|+.|++||+++++....+.. ..+|...+.+++++|+ +.++++++.|+.+.+|+...
T Consensus 122 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 201 (351)
T 3f3f_A 122 HLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD 201 (351)
T ss_dssp GGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred CCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence 99999999999999999988776543321 1257788999999997 99999999999999888887
Q ss_pred cce--EEEEe-eccceEEEEeCCCCC---eeEEecCCCcceeEeecccCcee----------------------------
Q 020461 223 LEL--IKTYV-TERPVNAVTMSPLLD---HVVLGGGQDASAVTTTDHRAGKF---------------------------- 268 (326)
Q Consensus 223 ~~~--~~~~~-~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~d~~~~~~---------------------------- 268 (326)
++. +..+. +...+.+++|+|++. .++++++.|+. +..+|.+.+..
T Consensus 202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-----------------------------
T ss_pred CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence 765 33333 456899999999983 34444444432 33444433210
Q ss_pred ------eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 269 ------EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 269 ------~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
...+|+....+.+..+.+|.+.|++++|+|++++||+|+.||.|+||++...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 1122223334556677899999999999999999999999999999999864
No 42
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-36 Score=298.96 Aligned_cols=305 Identities=20% Similarity=0.326 Sum_probs=245.7
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|.+.|++++|+|++++|++|+.|++|++|+..+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEe-cCCCcceeeeecC--CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461 84 GAQLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (326)
++.+..+. +..++.++.+.+. ..+++.+.. +..+.+|++. .+.....+.+|.+.|.+++|+|+++.
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-----d~~v~vwd~~------~~~~~~~~~~h~~~v~~~~~sp~~~~ 757 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN-----DFFLKLWDLN------QKECRNTMFGHTNSVNHCRFSPDDEL 757 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEET-----TSCEEEEETT------SSSEEEEECCCSSCEEEEEECSSTTE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeC-----CCeEEEEECC------CcchhheecCCCCCEEEEEEecCCCE
Confidence 99888775 4556777888763 333333322 2234455442 34577788899999999999999999
Q ss_pred EEEeeCCCcEEEEECCCCcccccccc----------------------------------------------------cc
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDK----------------------------------------------------ET 188 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~----------------------------------------------------~~ 188 (326)
+++++.||+|++||+.+++....+.. ..
T Consensus 758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~ 837 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT 837 (1249)
T ss_dssp EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence 99999999999999987654322110 12
Q ss_pred CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccC--
Q 020461 189 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA-- 265 (326)
Q Consensus 189 ~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~-- 265 (326)
+|...+.+++++|++.++++++.||.|++||+.++..+..+. +...+.+++|+|++..+++++.+.... .||.+.
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~--vw~~~~~~ 915 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR--VWETKKVC 915 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE--EEEHHHHH
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEE--EEEccccc
Confidence 677889999999999999999999999999999998888775 456799999999998887776544332 222110
Q ss_pred -----------------------------------------------------------------ceeeeEeecccceee
Q 020461 266 -----------------------------------------------------------------GKFEAKFFDKILQEE 280 (326)
Q Consensus 266 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 280 (326)
....+++|+......
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~ 995 (1249)
T 3sfz_A 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995 (1249)
T ss_dssp SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC
T ss_pred eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce
Confidence 001234555555555
Q ss_pred eccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 281 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 281 ~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
...+.+|.+.|++++|+|+|++|++++.||.|++|++....
T Consensus 996 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp EEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred eeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 56677899999999999999999999999999999987643
No 43
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=262.26 Aligned_cols=301 Identities=16% Similarity=0.160 Sum_probs=218.3
Q ss_pred eeeeecCCceeEEEEccCCCEE-EeecC---CCCeEEEecCCCCeeeec-cCcccceEEEEEcCC---CCeEEEEeCCCc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLL-FSCAK---DHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRD---SMTLITGSADQT 75 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l-~s~~~---d~~v~iw~~~~~~~~~~~-~~h~~~V~~~~~~~~---~~~l~s~~~d~~ 75 (326)
.++++|...|.+++|+|+++.+ ++++. |+.|++|++.+++..... .+|...|.+++|+|+ +++|++++.|+.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4567899999999999999755 55655 999999999998876443 378999999999998 699999999999
Q ss_pred EEEEEccCCc-EEEEEe-cCCCcceeee------ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461 76 AKLWNVETGA-QLFTFN-FDSPARSVDF------AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (326)
Q Consensus 76 i~~wd~~~~~-~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (326)
|++||+.+++ ....+. +...+.++.+ +++...++.+.. +..+.+|++... ......+..|.+
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~-----d~~i~vwd~~~~-----~~~~~~~~~~~~ 161 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR-----DGTVKVWDPRQK-----DDPVANMEPVQG 161 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET-----TSCEEEECTTSC-----SSCSEEECCCTT
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC-----CCeEEEEeCCCC-----CCcceeccccCC
Confidence 9999999887 555554 4455666644 444444443322 223444544321 113444444433
Q ss_pred ----ceeEEE----EecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC---CCCeEEEEeCCCeEE
Q 020461 148 ----RINRAV----WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---DGSHFLTGSLDKSAK 216 (326)
Q Consensus 148 ----~i~~~~----~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~---~~~~l~s~s~dg~i~ 216 (326)
.+.++. |+|++.++++++.|+.|++||+++++.... ..|...+.+++|+| ++.+|++++.||.|+
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----TNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE----EECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee----cCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 788888 788999999999999999999998876432 35778999999999 999999999999999
Q ss_pred EeecCCcceEEEEe------eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeec-------ccceeeecc
Q 020461 217 LWDARTLELIKTYV------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD-------KILQEEIGG 283 (326)
Q Consensus 217 iwd~~~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~ 283 (326)
+||+++++++..+. +...+.+++++|++..++++++.|+. +..+|.+.......... ....+.+..
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN 316 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCCccccccccceeec
Confidence 99999877665543 45689999999998855555555542 33344332211100000 001134556
Q ss_pred ccccCcceeEEEECCCCceEE-eecCCCcEEEeecCC
Q 020461 284 VKGHFGPINALAFNPDGKSFS-SGGEDGYVRLHHFDP 319 (326)
Q Consensus 284 ~~~h~~~v~~v~~s~d~~~la-t~s~Dg~i~l~~~~~ 319 (326)
+.+|.++|++++|+|++++|+ +|+.||.|+||++..
T Consensus 317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 778999999999999999998 899999999999874
No 44
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4e-37 Score=263.31 Aligned_cols=292 Identities=14% Similarity=0.221 Sum_probs=220.4
Q ss_pred eeeeecCCceeEEEEccC----CCEEEeecCCCCeEEEecCCCCeeeeccC-----cccceEEEEEcCC----CCeEEEE
Q 020461 4 ILMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSRD----SMTLITG 70 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-----h~~~V~~~~~~~~----~~~l~s~ 70 (326)
.++.+|..+|.+++|+|+ ...+++++.++.|++|+..+++.+..+.. |.+.|.+++|+|+ +++|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 456689999999999984 45666677777999999998887766654 5577999999998 6799999
Q ss_pred eCCCcEEEEEccCCcEEEEEe-cCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe---ccC
Q 020461 71 SADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGP 145 (326)
Q Consensus 71 ~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 145 (326)
+.|++|++||+.+++.+..+. +..++.++.+.+ +...++++.. +..+.+|++. .+.....+ .+|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~------~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-----DHALRLWNIQ------TDTLVAIFGGVEGH 160 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-----TSCEEEEETT------TTEEEEEECSTTSC
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEEee------cCeEEEEecccccc
Confidence 999999999999999888776 567788899987 5555444332 2234455442 23455555 689
Q ss_pred ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccc-------------------------cccCcceeeEEEEEc
Q 020461 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-------------------------KETGHKKTITSLAKA 200 (326)
Q Consensus 146 ~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------------------~~~~h~~~v~~v~~s 200 (326)
...|.++.|+|++..|++++.|+.|++||+++++....+. ...+|...|.+++++
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 9999999999999999999999999999998876543321 112388899999998
Q ss_pred CCCCeEEEEeCCCeEEEeecCCcce--------------EEEEe-eccceEEEEeCCC--CCeeEEecCCCcceeEeecc
Q 020461 201 ADGSHFLTGSLDKSAKLWDARTLEL--------------IKTYV-TERPVNAVTMSPL--LDHVVLGGGQDASAVTTTDH 263 (326)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~~~~--------------~~~~~-~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~d~ 263 (326)
+.++++++.|+.|++||+++++. +..+. +...+.+++++|+ +..+++++.+.. +..+|.
T Consensus 241 --~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~--i~vwd~ 316 (366)
T 3k26_A 241 --GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK--LYVWDL 316 (366)
T ss_dssp --TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC--EEEEEC
T ss_pred --CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc--EEEEEC
Confidence 67999999999999999988654 44443 3456888999998 777666544332 233333
Q ss_pred cCceeeeEeecccceeeecccccc--CcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 264 RAGKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
+.+.. .......+.+| ...|++++|+|++++|++|+.||.|++|++.
T Consensus 317 ~~~~~--------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 317 EVEDP--------HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CSSSG--------GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCC--------ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 22211 01122245556 7899999999999999999999999999974
No 45
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-37 Score=273.06 Aligned_cols=261 Identities=11% Similarity=0.089 Sum_probs=194.7
Q ss_pred eeeecCCceeEEEEccC------CCEEEeecCCCCeEEEecCCCCe-----------eeeccCcccceEEEEEcCCCCeE
Q 020461 5 LMKGHERPLTYLKYNKD------GDLLFSCAKDHTPTVWFADNGER-----------LGTYRGHNGAVWCCDVSRDSMTL 67 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~------~~~l~s~~~d~~v~iw~~~~~~~-----------~~~~~~h~~~V~~~~~~~~~~~l 67 (326)
.+.+|.+.|.+++|+|+ +.+||+++.|++|+||++.++.. ..++.+|...|.+++|+++ ..|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence 36678899999999997 57999999999999999987642 2367889999999999986 489
Q ss_pred EEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461 68 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (326)
Q Consensus 68 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (326)
++|+.||+|++||+++++. +...+.+|.+
T Consensus 281 asgs~DgtV~lWD~~~~~~---------------------------------------------------~~~~~~~H~~ 309 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEV---------------------------------------------------PSFYDQVHDS 309 (524)
T ss_dssp EEEETTSEEEEEETTBCSS---------------------------------------------------CSEEEECSSS
T ss_pred EEEeCCCEEEEEECCCCCC---------------------------------------------------ceEEeecccc
Confidence 9999999999999975421 1123457888
Q ss_pred ceeEE--EEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcc--eeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 148 RINRA--VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 148 ~i~~~--~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
.|.++ .|+|++ .+|+||+.|++|+|||+++++....+. +|. ..|.+++|+|++..+++++.|++|++||+++
T Consensus 310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~ 386 (524)
T 2j04_B 310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV---SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA 386 (524)
T ss_dssp CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE---EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC
T ss_pred cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc---cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc
Confidence 89998 578887 899999999999999998876654432 343 2478999999999999999999999999999
Q ss_pred cceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCce----------------ee---------eEeecc-
Q 020461 223 LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK----------------FE---------AKFFDK- 275 (326)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~----------------~~---------~~~~~~- 275 (326)
+.++..+. +...+.+++|+|++..+++++. |+. +..+|...+. +. +.+++.
T Consensus 387 ~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~-Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~ 464 (524)
T 2j04_B 387 AFAVHPLVSRETTITAIGVSRLHPMVLAGSA-DGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSY 464 (524)
T ss_dssp TTCCEEEEECSSCEEEEECCSSCCBCEEEET-TTE-EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCC
T ss_pred cccceeeecCCCceEEEEeCCCCCeEEEEEC-CCE-EEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCc
Confidence 98877664 5678999999999988776554 332 2222211100 00 111110
Q ss_pred ------cceeeeccccccCcceeEEEECCCCc---eEEeecCCCcEEEeecCCCce
Q 020461 276 ------ILQEEIGGVKGHFGPINALAFNPDGK---SFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 276 ------~~~~~~~~~~~h~~~v~~v~~s~d~~---~lat~s~Dg~i~l~~~~~~~~ 322 (326)
..+..+..+.+|..+|++|+|||++. .+|+|+.||+||||+++-+-|
T Consensus 465 ~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~~ 520 (524)
T 2j04_B 465 EVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEHH 520 (524)
T ss_dssp CCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC--
T ss_pred eecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccccc
Confidence 11334556789999999999999964 899999999999999998765
No 46
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=250.56 Aligned_cols=235 Identities=22% Similarity=0.356 Sum_probs=203.1
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
.+.+|...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.|++|++||++++
T Consensus 75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~ 154 (321)
T 3ow8_A 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 154 (321)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 85 AQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
+....+.. ...+.++.++++...++.+.. +..+.++++. .++.+..+++|..+|.+++|+|++++|++
T Consensus 155 ~~~~~~~~~~~~v~~~~~spdg~~lasg~~-----dg~i~iwd~~------~~~~~~~~~~h~~~v~~l~~spd~~~l~s 223 (321)
T 3ow8_A 155 KKEYSLDTRGKFILSIAYSPDGKYLASGAI-----DGIINIFDIA------TGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223 (321)
T ss_dssp SEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCCCEEEECTTSCEEEE
T ss_pred ceeEEecCCCceEEEEEECCCCCEEEEEcC-----CCeEEEEECC------CCcEEEEEcccCCceeEEEEcCCCCEEEE
Confidence 88776654 345677888887766655432 2234455442 34677788999999999999999999999
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~ 242 (326)
|+.|++|++||+++++....+ .+|...|.+++|+|++.+|++|+.|++|++||+++++++..+. +...+.+++|+|
T Consensus 224 ~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 224 ASDDGYIKIYDVQHANLAGTL---SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp ECTTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCcceeEEE---cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence 999999999999988766544 4799999999999999999999999999999999999998875 456899999999
Q ss_pred CCCeeEEecCC
Q 020461 243 LLDHVVLGGGQ 253 (326)
Q Consensus 243 ~~~~~~~~~~~ 253 (326)
++..+++++.+
T Consensus 301 ~g~~l~s~~~d 311 (321)
T 3ow8_A 301 NGSKIVSVGDD 311 (321)
T ss_dssp TSSEEEEEETT
T ss_pred CCCEEEEEeCC
Confidence 98887766543
No 47
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-35 Score=258.08 Aligned_cols=235 Identities=24% Similarity=0.387 Sum_probs=201.4
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++++.++.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus 144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~ 223 (410)
T 1vyh_C 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223 (410)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC-----
Q 020461 84 GAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL----- 157 (326)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 157 (326)
++.+..+.. ...+..+.+.+++.+++.+.. +..+.+|++. .+.....+.+|...|.++.|+|+
T Consensus 224 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-----D~~v~vwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 292 (410)
T 1vyh_C 224 GYCVKTFTGHREWVRMVRPNQDGTLIASCSN-----DQTVRVWVVA------TKECKAELREHRHVVECISWAPESSYSS 292 (410)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECCSCGGGG
T ss_pred CcEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCeEEEEECC------CCceeeEecCCCceEEEEEEcCcccccc
Confidence 998877754 445667777776665554432 2334455442 24566778899999999999996
Q ss_pred ---------------CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 158 ---------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 158 ---------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
+.+|++|+.|++|++||+++++++..+ .+|...|++++|+|++.+|++|+.|++|++||+++
T Consensus 293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~---~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL---VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred hhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE---ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 568999999999999999998876654 47999999999999999999999999999999999
Q ss_pred cceEEEEe-eccceEEEEeCCCCCeeEEecC
Q 020461 223 LELIKTYV-TERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
++++..+. +...+.+++|+|++..+++++.
T Consensus 370 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp SCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred CceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence 99888875 4568999999999987776544
No 48
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=285.43 Aligned_cols=240 Identities=14% Similarity=0.132 Sum_probs=185.5
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
....||...|.+++|+|++++||+|+.||+|+||+..+.+....+ .|..+|.+++|+| +++|++++.|++|++||+.+
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 556799999999999999999999999999999999887776554 4788999999999 88999999999999999999
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceE-------EEeccCccceeEEEEec
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-------LILKGPQGRINRAVWGP 156 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~ 156 (326)
++.+..+.+...+.++.++++...++++.. +..+.+|++...... ...+ ...++|.++|.+++|+|
T Consensus 89 ~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~-----dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 89 QKVLTTVFVPGKITSIDTDASLDWMLIGLQ-----NGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp CSEEEEEECSSCEEEEECCTTCSEEEEEET-----TSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred CcEEEEEcCCCCEEEEEECCCCCEEEEEcC-----CCcEEEEECCCCccc--cceeccccccccccccCCCCeEEEEEcc
Confidence 998888877778888899887766555432 223444443221000 0000 12367889999999999
Q ss_pred CC-cEEEEeeCCCcEEEEECCCCccccccccc---------------cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 157 LN-RTIISAGEDAIVRIWDTETGKLLKESDKE---------------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 157 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------------~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
++ ..+++|+.|++| +||+++++....+... ..|...|++++|+|+|.+|++|+.||+|++||+
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 64 689999999999 9999988766554321 235678999999999999999999999999999
Q ss_pred CCcceEEEEe-------------------eccceEEEEeC----CCCCeeEEecCC
Q 020461 221 RTLELIKTYV-------------------TERPVNAVTMS----PLLDHVVLGGGQ 253 (326)
Q Consensus 221 ~~~~~~~~~~-------------------~~~~~~~~~~s----~~~~~~~~~~~~ 253 (326)
++++++.... +...+.+++|+ |++..++++++.
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 9988775411 12368899995 444455555543
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.4e-36 Score=253.40 Aligned_cols=286 Identities=16% Similarity=0.194 Sum_probs=224.9
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
-|..++.+++|+|||++++++..++.+.+|............+|.+.|.+++|+|+++++++++ |+.|++||+.+++..
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 3556789999999999999998888887776555544445558999999999999999999998 999999999876532
Q ss_pred ---EEE---ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 88 ---FTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 88 ---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
..+ .+..++.++.+.++...++++.. +..+.++++... .......+.+|...+.++.|+|+++.+
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE-----ASTLSIWDLAAP----TPRIKAELTSSAPACYALAISPDSKVC 156 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEES-----SSEEEEEECCCC------EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcC-----CCcEEEEECCCC----CcceeeecccCCCceEEEEECCCCCEE
Confidence 222 24556777888887665554332 123444443221 122456678899999999999999999
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeC
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s 241 (326)
++++.|+.|++||+++++....+ .+|...+.+++++|++.+|++++.|+.|++||+++++.+..+.....+.+++++
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s 233 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC 233 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred EEEeCCCcEEEEeCCCCceeeee---ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEEC
Confidence 99999999999999988766554 358889999999999999999999999999999999999888888889999999
Q ss_pred CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
|+++.+++++.+.. +++|+....+. ..+..|...|.+++|+|++++|++++.||.|++|+++...
T Consensus 234 ~~~~~l~~~~~~~~--------------i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 234 PTGEWLAVGMESSN--------------VEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp TTSSEEEEEETTSC--------------EEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCCCEEEEEcCCCc--------------EEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 99988877654332 23333322222 2356788999999999999999999999999999988654
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=263.48 Aligned_cols=293 Identities=13% Similarity=0.192 Sum_probs=222.7
Q ss_pred cCCceeEEEEccCCC-EEEee----------cCCCCeEEEecCCCC---eeeeccCcccceEEEEEcCCCCeEEEEeCCC
Q 020461 9 HERPLTYLKYNKDGD-LLFSC----------AKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQ 74 (326)
Q Consensus 9 h~~~i~~~~~s~~~~-~l~s~----------~~d~~v~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~ 74 (326)
+...+.+++|+|+++ +|+++ +.|+.|+||++.+++ .+..+ .|...|.+++|+|++++|++++.|+
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 445789999999987 99999 899999999998875 33333 5889999999999999999999999
Q ss_pred cEEEEEccC----CcEEEEEe-cCCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCC---CCceEEEeccC
Q 020461 75 TAKLWNVET----GAQLFTFN-FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQ---GGESVLILKGP 145 (326)
Q Consensus 75 ~i~~wd~~~----~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 145 (326)
.|++||+.+ .+....+. +..++.++.+.++ ..+++.+.. +..+.+|++....... .........+|
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN-----NGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS-----SSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC-----CCeEEEEECCCCccccccccccccccccCC
Confidence 999999987 33554443 4567888899875 444444332 2234445443221000 00111234678
Q ss_pred ccceeEEEEecC-CcEEEEeeCCCcEEEEECCCCccccccccc---cCcceeeEEEEEcCCC-CeEEEEeCCC---eEEE
Q 020461 146 QGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKE---TGHKKTITSLAKAADG-SHFLTGSLDK---SAKL 217 (326)
Q Consensus 146 ~~~i~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~h~~~v~~v~~s~~~-~~l~s~s~dg---~i~i 217 (326)
...|.+++|+|+ +..|++++.|+.|++||+++++....+... .+|...+.+++|+|++ .++++++.|+ .|++
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~ 244 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence 899999999999 689999999999999999988776654321 1237889999999997 6899999999 9999
Q ss_pred eecCCc-ceEEEEe--eccceEEEEeCC-CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeE
Q 020461 218 WDARTL-ELIKTYV--TERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 293 (326)
Q Consensus 218 wd~~~~-~~~~~~~--~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 293 (326)
||++++ +++..+. +...+.+++|+| ++..+++++ .|+ .+++|+....+.+..+.+|...|.+
T Consensus 245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-~dg-------------~v~~wd~~~~~~~~~~~~~~~~v~~ 310 (416)
T 2pm9_A 245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG-RDN-------------TVLLWNPESAEQLSQFPARGNWCFK 310 (416)
T ss_dssp EETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE-SSS-------------EEEEECSSSCCEEEEEECSSSCCCC
T ss_pred EeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe-CCC-------------CEEEeeCCCCccceeecCCCCceEE
Confidence 999986 5566654 567899999999 665555544 333 2456666566666777889999999
Q ss_pred EEECCCC-ceEEeecCCCcEEEeecCCCc
Q 020461 294 LAFNPDG-KSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 294 v~~s~d~-~~lat~s~Dg~i~l~~~~~~~ 321 (326)
++|+|++ .+|++++.||.|+||++....
T Consensus 311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 311 TKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp EEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred EEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 9999999 899999999999999987643
No 51
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=257.01 Aligned_cols=283 Identities=15% Similarity=0.189 Sum_probs=217.4
Q ss_pred eecCCceeEEEEccCCC-EEEeecCCCCeEEEec----CCCC------eeeeccC----------cccceEEEEEcCCCC
Q 020461 7 KGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFA----DNGE------RLGTYRG----------HNGAVWCCDVSRDSM 65 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~----~~~~------~~~~~~~----------h~~~V~~~~~~~~~~ 65 (326)
..|..+|.+++|+|+++ +|++|+.|+.|++|++ .+++ ....+.. |.+.|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34568999999999999 9999999999999999 8887 4444443 688999999999999
Q ss_pred eEEEEeCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 66 ~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
+|++++.|+.|++|| .+++....+. +..++.++.+.+++..++.+.. +..+.++++. .+.....+..
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~------~~~~~~~~~~ 189 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV-----ENVTILWNVI------SGTVMQHFEL 189 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET-----TCCEEEEETT------TTEEEEEECC
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec-----CCeEEEEECC------CCcEEEEeec
Confidence 999999999999999 5566666554 4567788888877665544332 1233344332 2334445555
Q ss_pred Cccc---------------eeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE
Q 020461 145 PQGR---------------INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209 (326)
Q Consensus 145 ~~~~---------------i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 209 (326)
+... +.++.|+|++ .+++++.|+.|++||+++++....+ .+|...+.+++++|++.+|+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL---IGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp C---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE---CCCSSCEEEEEEETTTTEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee---ccCCCceEEEEECCCCCEEEEE
Confidence 5544 8899999974 5888999999999999988766544 3688999999999999999999
Q ss_pred eCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC
Q 020461 210 SLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 288 (326)
Q Consensus 210 s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~ 288 (326)
+.|+.|++||+++++.+..+. +...+.+++++|++ .++++ +.++ .+++|+....+.+..+..|.
T Consensus 266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-~~d~-------------~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISC-SMDG-------------SVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEE-ETTS-------------EEEEEETTTTEEEEEEECTT
T ss_pred cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEE-eCCC-------------cEEEEECCCCcEeEecccCC
Confidence 999999999999998888875 56789999999988 44444 3333 24455555555566677889
Q ss_pred cceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 289 GPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 289 ~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.+|.+++|+|++++|++++.||.|++|+++..
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred ccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 99999999999999999999999999998653
No 52
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.4e-36 Score=256.72 Aligned_cols=285 Identities=13% Similarity=0.159 Sum_probs=205.5
Q ss_pred CceeEEEEccCCCEEEeecCCC-------CeEEEecCCCCee----------eeccCcccceEEEEEcCCCCeEEEE---
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDH-------TPTVWFADNGERL----------GTYRGHNGAVWCCDVSRDSMTLITG--- 70 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~-------~v~iw~~~~~~~~----------~~~~~h~~~V~~~~~~~~~~~l~s~--- 70 (326)
-||++++|+||+++|++|+.|. .|++|++..+... ..+.+|...|.+++++ ++.++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999998654 4999998765321 2467788889888775 4455554
Q ss_pred --------eCCCcEEEEEccCCcEEEEE----ec------CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCC
Q 020461 71 --------SADQTAKLWNVETGAQLFTF----NF------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 132 (326)
Q Consensus 71 --------~~d~~i~~wd~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (326)
+.|+++|+|++.+......+ +. +..++.+.|+|+.+.+++++.. .+..+++|++.
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~---~d~~i~iwd~~---- 165 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK---VPAIMRIIDPS---- 165 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC---SSCEEEEEETT----
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC---CCCEEEEeECC----
Confidence 46888999998765432211 11 1224567888877665443321 12345556543
Q ss_pred CCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC
Q 020461 133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 212 (326)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d 212 (326)
.+..+..+. |.+.|.+++|+|+++++++++.++ +.+|+..+++..... ...+|...+.+++|+|++.++++++.|
T Consensus 166 --~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~-~~~~~~~~v~~v~fspdg~~l~~~s~d 240 (365)
T 4h5i_A 166 --DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARK-TDFDKNWSLSKINFIADDTVLIAASLK 240 (365)
T ss_dssp --TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEE-CCCCTTEEEEEEEEEETTEEEEEEEES
T ss_pred --CCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeee-ecCCCCCCEEEEEEcCCCCEEEEEecC
Confidence 234555554 778899999999999999998655 667777666654332 234688999999999999999999988
Q ss_pred C----eEEEeecCCcceE----EEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461 213 K----SAKLWDARTLELI----KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283 (326)
Q Consensus 213 g----~i~iwd~~~~~~~----~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (326)
+ .+++||+...... ..+. +...+.+++|+|++..+++++. |+ .+++|+...++.+..
T Consensus 241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-D~-------------~V~iwd~~~~~~~~~ 306 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN-DN-------------SIALVKLKDLSMSKI 306 (365)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET-TS-------------CEEEEETTTTEEEEE
T ss_pred CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC-CC-------------EEEEEECCCCcEEEE
Confidence 7 6888998765432 2222 3457999999999988776644 32 245666666665555
Q ss_pred -ccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461 284 -VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 323 (326)
Q Consensus 284 -~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~ 323 (326)
+.+|..+|++|+|||||++|||||.|++||||++++++-.
T Consensus 307 ~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~ 347 (365)
T 4h5i_A 307 FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYAN 347 (365)
T ss_dssp ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC
T ss_pred ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcC
Confidence 4789999999999999999999999999999999887754
No 53
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.1e-35 Score=268.53 Aligned_cols=296 Identities=15% Similarity=0.201 Sum_probs=217.0
Q ss_pred eeeeecCC---ceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeec-c---CcccceEEEEEcCCCCeEEEEeCCCc
Q 020461 4 ILMKGHER---PLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTY-R---GHNGAVWCCDVSRDSMTLITGSADQT 75 (326)
Q Consensus 4 ~~~~~h~~---~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~-~---~h~~~V~~~~~~~~~~~l~s~~~d~~ 75 (326)
..+.+|.. .|.+++|+|+ +++|++++.|+.|++||+.+++.+..+ . +|.+.|.+++|+ ++++|++++.|+.
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT 275 (615)
T ss_dssp EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE
T ss_pred eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc
Confidence 35677888 9999999999 999999999999999999999999998 6 899999999999 9999999999999
Q ss_pred EEEEEccCCcEEEEEecC-----CCcceeeeecCCeEEEEEcCccceecee-----------------------------
Q 020461 76 AKLWNVETGAQLFTFNFD-----SPARSVDFAVGDKLAVITTDPFMELNSA----------------------------- 121 (326)
Q Consensus 76 i~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 121 (326)
|++||+.+++.+..+... .....+.+..+..++....+..+.+...
T Consensus 276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~ 355 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSY 355 (615)
T ss_dssp EEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEET
T ss_pred EEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECC
Confidence 999999999888777654 2333444444444544444332211110
Q ss_pred ---eeeeee--------------ccCCCC------C--------------------------------------------
Q 020461 122 ---IHVKRI--------------ARDPAD------Q-------------------------------------------- 134 (326)
Q Consensus 122 ---~~~~~~--------------~~~~~~------~-------------------------------------------- 134 (326)
+.+|++ ...... .
T Consensus 356 dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 435 (615)
T 1pgu_A 356 DGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF 435 (615)
T ss_dssp TSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETT
T ss_pred CCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEecc
Confidence 000000 000000 0
Q ss_pred CCceEEEeccCccceeEEEEecCCcEEEEeeC-CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC
Q 020461 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (326)
Q Consensus 135 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg 213 (326)
.++.+..+ .+...+.+++++ ++++++++. |+.|++||+.+++... ....+|...|++++++|++.+|++++.||
T Consensus 436 ~~~~~~~~-~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 510 (615)
T 1pgu_A 436 TGDIIKSV-RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGDVMG 510 (615)
T ss_dssp TCCEEEEE-ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceeeec-ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECCCCCEEEEcCCCC
Confidence 00001111 133445556665 667777777 8888888887665432 23357889999999999999999999999
Q ss_pred eEEEeecCCcceEEEEe--eccceEEEEeCC----------CCCeeEEecCCCcceeEeecccCceeeeEeecccce-ee
Q 020461 214 SAKLWDARTLELIKTYV--TERPVNAVTMSP----------LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-EE 280 (326)
Q Consensus 214 ~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~----------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~ 280 (326)
.|++||+++++++..+. +...+.+++|+| ++..+++++.+. .+++|+.... +.
T Consensus 511 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg--------------~i~iw~~~~~~~~ 576 (615)
T 1pgu_A 511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT--------------NIFIYSVKRPMKI 576 (615)
T ss_dssp CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS--------------CEEEEESSCTTCC
T ss_pred eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC--------------cEEEEECCCCcee
Confidence 99999999999988875 667899999999 877777664433 2345554443 45
Q ss_pred eccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 281 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 281 ~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+..+.+|.+.|++++|+|+++ |++++.||+|++|+++.+
T Consensus 577 ~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 577 IKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp EEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred chhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 566789999999999999999 999999999999999764
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-37 Score=273.08 Aligned_cols=254 Identities=13% Similarity=0.075 Sum_probs=187.9
Q ss_pred cCCceeEEEEccCC---------CEEEe-------------------ecCCCCeEEEecCCCCee----eeccCcccceE
Q 020461 9 HERPLTYLKYNKDG---------DLLFS-------------------CAKDHTPTVWFADNGERL----GTYRGHNGAVW 56 (326)
Q Consensus 9 h~~~i~~~~~s~~~---------~~l~s-------------------~~~d~~v~iw~~~~~~~~----~~~~~h~~~V~ 56 (326)
+...|.+++|+|++ ++||+ ++.|++|+||++.+++.. .++.+|.+.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 56677777777775 45554 668899999999887642 34667889999
Q ss_pred EEEEcCC------CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccC
Q 020461 57 CCDVSRD------SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 130 (326)
Q Consensus 57 ~~~~~~~------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (326)
+++|+|+ +++|++++.|++|++||+.+++... ... .
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~----------------~~~--------------~-------- 253 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV----------------HVF--------------K-------- 253 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS----------------SEE--------------E--------
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc----------------ccc--------------e--------
Confidence 9999996 5799999999999999997653210 000 0
Q ss_pred CCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEE--EEcCCC-CeEE
Q 020461 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL--AKAADG-SHFL 207 (326)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v--~~s~~~-~~l~ 207 (326)
....+...+.+|...|.+++|+|. ..|++|+.||+|++||+++++.... ...+|...|+++ ++++++ .+|+
T Consensus 254 ---~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~--~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 254 ---MCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSF--YDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp ---CCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSE--EEECSSSCEEEEEEECCTTSCCEEE
T ss_pred ---eecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceE--EeecccccEEEEEEEcCCCCCeEEE
Confidence 000123456788899999999986 4899999999999999987643221 234799999999 578887 8999
Q ss_pred EEeCCCeEEEeecCCcceEEEEeec---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc
Q 020461 208 TGSLDKSAKLWDARTLELIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV 284 (326)
Q Consensus 208 s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 284 (326)
||+.|++|++||+++++++..+... ..+.+++|+|++..+++++.++. +++|+......+..+
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~t--------------v~lwd~~~~~~~~~l 393 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASS--------------LRAVPSRAAFAVHPL 393 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSE--------------EEEEETTCTTCCEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCc--------------EEEEECcccccceee
Confidence 9999999999999998876665422 24788999999887666544331 344444333334456
Q ss_pred cccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 285 KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 285 ~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.+|.+.|++|+|||+|++||+|+.||+|+||+....
T Consensus 394 ~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 394 VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 789999999999999999999999999999987543
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.7e-34 Score=255.32 Aligned_cols=288 Identities=21% Similarity=0.347 Sum_probs=220.7
Q ss_pred eeeeecCCce-eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 4 ILMKGHERPL-TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 4 ~~~~~h~~~i-~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
..+++|...+ .++.| ++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|++++ .+++|+.|++|++||++
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 5788999885 55555 67899999999999999999999999999999999999999887 89999999999999999
Q ss_pred CCcEEEEEe-cCCCcceeeeec--CCeEEE-EEcCccceeceeeeeeeeccCCC-----------------CCCCceEEE
Q 020461 83 TGAQLFTFN-FDSPARSVDFAV--GDKLAV-ITTDPFMELNSAIHVKRIARDPA-----------------DQGGESVLI 141 (326)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 141 (326)
+++.+..+. +..++.++.+.+ +...++ ++.+.. +.+|++..... .........
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC------EEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc------EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 998887776 456777777774 334443 333332 33333322110 011123567
Q ss_pred eccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~ 221 (326)
+.+|...+.++ ++++.++++|+.|+.|++||+++++.+..+ .+|...|.+++++|++.++++|+.||+|++||++
T Consensus 266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL---SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 78888888876 677899999999999999999988876654 4688999999999999999999999999999999
Q ss_pred CcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC
Q 020461 222 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (326)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~ 300 (326)
+++++..+. +...+.++++++ +.++++ +.|+. +++|+.......... .|...+..++|+|++
T Consensus 341 ~~~~~~~~~~h~~~v~~~~~~~--~~l~s~-s~dg~-------------v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 341 NGELMYTLQGHTALVGLLRLSD--KFLVSA-AADGS-------------IRGWDANDYSRKFSY-HHTNLSAITTFYVSD 403 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECS--SEEEEE-ETTSE-------------EEEEETTTCCEEEEE-ECTTCCCEEEEEECS
T ss_pred CCcEEEEEeCCCCcEEEEEEcC--CEEEEE-eCCCc-------------EEEEECCCCceeeee-cCCCCccEEEEEeCC
Confidence 999998885 456788999874 445444 44432 233443332222111 255678889999999
Q ss_pred ceEEeecCCCcEEEeecCCCcee
Q 020461 301 KSFSSGGEDGYVRLHHFDPDYFN 323 (326)
Q Consensus 301 ~~lat~s~Dg~i~l~~~~~~~~~ 323 (326)
.++++|+ ||.|++|++....+-
T Consensus 404 ~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 404 NILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEE
T ss_pred CEEEEec-CCeEEEEECCCCcEE
Confidence 9999999 999999999876543
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.9e-35 Score=275.21 Aligned_cols=291 Identities=14% Similarity=0.203 Sum_probs=238.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|.+.|.+++|+|++++|++++.||.|+||+..+++.+..+.+|.++|.+++|+|++++|++++.|+.|++||+.+
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEE
Q 020461 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI 161 (326)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 161 (326)
++.+..+. +...+.++.|++++..++.+.. +..+.+|.+.. .......+.+|...|.++.|+| ++..|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWEN-----NWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSEEEEEEGGG-----TSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred CcEEEEEecCCCCEEEEEEeCCCCEEEEEcC-----CCEEEEEECCC-----CceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 99888776 4567888899987765544332 23445555432 1245667789999999999999 78899
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC--CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEE
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 238 (326)
++++.|++|++||+.+++....+. ..|...+.+++++| ++.++++++.||.|++||+++++++..+. +...+.++
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~ 234 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 999999999999998776654433 24557899999999 99999999999999999999999888876 45689999
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce-EEeecCCCcEEEeec
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS-FSSGGEDGYVRLHHF 317 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~-lat~s~Dg~i~l~~~ 317 (326)
+++|+++.+++++.++ .+++|+....+....+..|...|++++|+|++.. +++++.|+.+.+|++
T Consensus 235 ~~~~~~~~l~~~~~dg--------------~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDG--------------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp EECSSSSEEEEEETTS--------------CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred EEcCCCCEEEEEeCCC--------------eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 9999998777665433 2345555555555667778899999999999874 244455777888876
Q ss_pred CCC
Q 020461 318 DPD 320 (326)
Q Consensus 318 ~~~ 320 (326)
...
T Consensus 301 ~~~ 303 (814)
T 3mkq_A 301 GND 303 (814)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 57
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1e-35 Score=260.72 Aligned_cols=274 Identities=19% Similarity=0.259 Sum_probs=208.6
Q ss_pred eeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCC----------CCeeeeccCcccceEEEEEcCCCC-eEEEEe
Q 020461 4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADN----------GERLGTYRGHNGAVWCCDVSRDSM-TLITGS 71 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~----------~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~ 71 (326)
..+.+|.+.|++++|+|+ +++|++++.||.|++|++.+ ...+..+.+|...|.+++|+|+++ +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 556789999999999997 68999999999999999986 567778899999999999999988 999999
Q ss_pred CCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461 72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (326)
Q Consensus 72 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (326)
.||+|++||+.++.... . . ......+.+|...|.+
T Consensus 202 ~dg~i~vwd~~~~~~~~--------~-----------------------~--------------~~~~~~~~~h~~~v~~ 236 (430)
T 2xyi_A 202 DDHTICLWDINATPKEH--------R-----------------------V--------------IDAKNIFTGHTAVVED 236 (430)
T ss_dssp TTSCEEEEETTSCCBGG--------G-----------------------E--------------EECSEEECCCSSCEEE
T ss_pred CCCeEEEEeCCCCCCCC--------c-----------------------e--------------eccceeecCCCCCEee
Confidence 99999999997642100 0 0 0012234578889999
Q ss_pred EEEec-CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCC-cceEEE
Q 020461 152 AVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART-LELIKT 228 (326)
Q Consensus 152 ~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~-~~~~~~ 228 (326)
++|+| .+..|++++.|+.|++||++++...........|...|++++|+|++. .+++|+.||+|++||+++ .+++..
T Consensus 237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 99999 567999999999999999987632222222347889999999999987 588999999999999998 456666
Q ss_pred Ee-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee--cccceeeeccccccCcceeEEEECCCCc-eEE
Q 020461 229 YV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF--DKILQEEIGGVKGHFGPINALAFNPDGK-SFS 304 (326)
Q Consensus 229 ~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~la 304 (326)
+. +...+.+++|+|+++.++++++.++. +..+|.+........- .....+.+....+|...|++++|+|++. +|+
T Consensus 317 ~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 317 FESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred eecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 65 56789999999999876666555542 3333332211000000 0000133445678999999999999999 899
Q ss_pred eecCCCcEEEeecCCCcee
Q 020461 305 SGGEDGYVRLHHFDPDYFN 323 (326)
Q Consensus 305 t~s~Dg~i~l~~~~~~~~~ 323 (326)
+++.||.|+||+++...++
T Consensus 396 s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 396 SVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp EEETTSEEEEEEECHHHHC
T ss_pred EEECCCCEEEeEccccccc
Confidence 9999999999999876543
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-35 Score=259.23 Aligned_cols=281 Identities=14% Similarity=0.162 Sum_probs=217.7
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE-e
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-N 91 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~ 91 (326)
+++++|+|++++|++++.|+.+++|+..+++....+..| ..+....|++++++|++++.|+.|++||+.+++....+ .
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 457899999999999999999999999988877777776 45555678999999999999999999999988877665 4
Q ss_pred cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEE
Q 020461 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (326)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~ 171 (326)
+...+.++.|++++..++.+.. +..+.+|++. .+.....+.+|...|.+++|+|+++.|++++.|++|+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQ-----DMQLKIWSVK------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccCccEEEEECCCCCEEEEEeC-----CCeEEEEeCC------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 5677888999987665554432 2345555543 2345667789999999999999999999999999999
Q ss_pred EEECCCCccccccccccCcc---------------------eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 172 IWDTETGKLLKESDKETGHK---------------------KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 172 ~wd~~~~~~~~~~~~~~~h~---------------------~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
+||+++++....+.....|. ..+.+++|+|++.+|++|+.||.|++||+++++.+..+.
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence 99999988776654333333 445555668999999999999999999999998888775
Q ss_pred e--ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce-eeeccccc-cCcceeEEEECCCCceEEee
Q 020461 231 T--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-EEIGGVKG-HFGPINALAFNPDGKSFSSG 306 (326)
Q Consensus 231 ~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~-h~~~v~~v~~s~d~~~lat~ 306 (326)
. ...+.+++|+|++..++++++.++. +++|+.... ..+..+.+ |...|.++.+ |++++|+++
T Consensus 287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~ 352 (420)
T 3vl1_A 287 SKFTCSCNSLTVDGNNANYIYAGYENGM-------------LAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSS 352 (420)
T ss_dssp CTTSSCEEEEEECSSCTTEEEEEETTSE-------------EEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEE
T ss_pred cccCCCceeEEEeCCCCCEEEEEeCCCe-------------EEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEe
Confidence 3 4679999999999844444444432 334443322 11333444 6677888865 578999999
Q ss_pred cCCCcEEEeecCC
Q 020461 307 GEDGYVRLHHFDP 319 (326)
Q Consensus 307 s~Dg~i~l~~~~~ 319 (326)
+.||+|++|++..
T Consensus 353 ~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 353 GFDTSIKLDIISD 365 (420)
T ss_dssp TTTEEEEEEEECC
T ss_pred cCCccEEEEeccC
Confidence 9999999999876
No 59
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-35 Score=253.07 Aligned_cols=278 Identities=15% Similarity=0.157 Sum_probs=190.3
Q ss_pred eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC------CCcEEEEEccCCcE-
Q 020461 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA------DQTAKLWNVETGAQ- 86 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~- 86 (326)
..+.+.+++.+ +.++.+.....|++.... ..+|.+.|.+++|+|||++|++||. |++|++|+..++..
T Consensus 9 sg~d~g~~~~~-~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~ 83 (357)
T 4g56_B 9 SGVDLGTENLY-FQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN 83 (357)
T ss_dssp ------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C
T ss_pred cCCCCCccceE-EecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc
Confidence 45556666655 445556778999875433 3579999999999999999999997 77899998876543
Q ss_pred ----EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 87 ----LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 87 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
.....+...+.++.|.+++.+++++.+.. +++|++...... ........+|.+.|.+++|+|++++|+
T Consensus 84 ~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~------v~lWd~~~~~~~--~~~~~~~~~h~~~V~~v~~spdg~~l~ 155 (357)
T 4g56_B 84 ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGA------VELWEILEKESL--LVNKFAKYEHDDIVKTLSVFSDGTQAV 155 (357)
T ss_dssp GGGCSEEEECSSCEEEEEEETTTEEEEEETTSC------EEEC----------CCCCEEECCCSSCEEEEEECSSSSEEE
T ss_pred eeEecccCCCCCCEEEEEEcCCCCEEEEECCCE------EEEeecccccee--EEEeeccCCCCCCEEEEEECCCCCEEE
Confidence 22334566788889999888877665543 444544321110 112234558999999999999999999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCcceEEEEe---eccceEEE
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAV 238 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~ 238 (326)
+|+.|++|++||+++++.+..+ .+|...|.++++++++. ++++++.|++|++||+++++++..+. ....+.++
T Consensus 156 sgs~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v 232 (357)
T 4g56_B 156 SGGKDFSVKVWDLSQKAVLKSY---NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV 232 (357)
T ss_dssp EEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccch
Confidence 9999999999999998876654 47899999999999875 78999999999999999988776653 34568999
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC-ceEEeecCCCcEEEeec
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~-~~lat~s~Dg~i~l~~~ 317 (326)
+|+|++..++++++.++ .+++|+....+.+..+.+|...|++++|+|++ ++||+|+.||+|+||++
T Consensus 233 ~~sp~~~~~la~g~~d~-------------~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 233 TWHPEKDDTFACGDETG-------------NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp EECTTSTTEEEEEESSS-------------CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred hhhhcccceEEEeeccc-------------ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 99999877776665554 24455555555556678899999999999987 57999999999999998
Q ss_pred CCC
Q 020461 318 DPD 320 (326)
Q Consensus 318 ~~~ 320 (326)
+..
T Consensus 300 ~~~ 302 (357)
T 4g56_B 300 DFS 302 (357)
T ss_dssp TSC
T ss_pred CCC
Confidence 754
No 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.5e-36 Score=293.55 Aligned_cols=280 Identities=18% Similarity=0.228 Sum_probs=239.6
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
.+...+.+++|+|+++++++|+.||.|++|+..+++....+.+|.+.|.+++|+|+++++++++.|++|++||+.+++..
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
....+...+..+.+.++..++..+.+. .+.+|++. .+.....+.+|.+.|.+++|+|+++.+++++.|
T Consensus 1039 ~~~~~~~~v~~~~~~~~~~l~~~~~dg------~v~vwd~~------~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A 1039 FLQAHQETVKDFRLLQDSRLLSWSFDG------TVKVWNVI------TGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp CCBCCSSCEEEEEECSSSEEEEEESSS------EEEEEETT------TTCCCEEEECCSSCCCCEEECSSSSSCEEECCS
T ss_pred EEecCCCcEEEEEEcCCCcEEEEECCC------cEEEEECC------CCceeEEEcccCCcEEEEEECCCCCEEEEEcCC
Confidence 655566777788888877776665543 34445442 345667788999999999999999999999999
Q ss_pred CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE----------eeccceEE
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY----------VTERPVNA 237 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----------~~~~~~~~ 237 (326)
++|++||+.+++....+ .+|...|++++|+|++.+|++|+.||+|++||+.+++++..+ .+...+.+
T Consensus 1107 ~~v~iwd~~~~~~~~~l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A 1107 KTAKIWSFDLLSPLHEL---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp SCCCEECSSSSSCSBCC---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCE
T ss_pred CcEEEEECCCcceeeee---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEE
Confidence 99999999988776554 478999999999999999999999999999999998877654 24567999
Q ss_pred EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
++|+|++..++++++ .+++|+...++.+..+.+|.+.|++++|+|||++|++++.||.|++|++
T Consensus 1184 l~fs~dg~~l~s~~g----------------~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1184 VCFSPDSKTLVSAGG----------------YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEECTTSSCEEEESS----------------SEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEECCCCCEEEECCC----------------eEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 999999998877642 2456666666667778889999999999999999999999999999987
Q ss_pred C
Q 020461 318 D 318 (326)
Q Consensus 318 ~ 318 (326)
.
T Consensus 1248 ~ 1248 (1249)
T 3sfz_A 1248 L 1248 (1249)
T ss_dssp C
T ss_pred c
Confidence 5
No 61
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-36 Score=278.34 Aligned_cols=256 Identities=18% Similarity=0.251 Sum_probs=199.9
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecC--CCCeeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~--~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~~w 79 (326)
.++.+|.+.|++++|+|++++|++|+.||+|++|++. ++..+..+.+|.++|.+++|+|+ +++|++|+.||+|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 5789999999999999999999999999999999998 55678889999999999999988 8999999999999999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-- 157 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 157 (326)
|+.+++.. ......+|...|.++.|+|+
T Consensus 83 d~~~~~~~--------------------------------------------------~~~~~~~h~~~V~~v~~sp~~~ 112 (753)
T 3jro_A 83 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY 112 (753)
T ss_dssp EEETTEEE--------------------------------------------------EEEEECCCSSCEEEEEECCGGG
T ss_pred ECCCCccc--------------------------------------------------ccccccCCCCCeEEEEECCCCC
Confidence 98765321 12234567788999999999
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-------------CCCeEEEEeCCCeEEEeecCCcc
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-------------DGSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------~~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
+..+++|+.||.|++||++++...... ...+|...|.+++++| ++.++++|+.||+|++||++++.
T Consensus 113 ~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 113 GPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp CSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred CCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 899999999999999999877443322 2347889999999999 58999999999999999998873
Q ss_pred ----eEEEEe-eccceEEEEeCCC---CCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE
Q 020461 225 ----LIKTYV-TERPVNAVTMSPL---LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296 (326)
Q Consensus 225 ----~~~~~~-~~~~~~~~~~s~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 296 (326)
+...+. +...+.+++|+|+ +..+++++. |+. +..+|.+.+.. ..........+|.+.|++++|
T Consensus 192 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~-I~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~l~~ 262 (753)
T 3jro_A 192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRT-CIIWTQDNEQG-------PWKKTLLKEEKFPDVLWRASW 262 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-SSC-EEEEEESSSSS-------CCBCCBSSSSCCSSCCCCEEE
T ss_pred ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-CCE-EEEecCCCCCC-------cceeEEeccCCCCCceEEEEE
Confidence 333333 4568999999999 555555543 332 22333222110 001123334568899999999
Q ss_pred CCCCceEEeecCCCcEEEeecCC
Q 020461 297 NPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 297 s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+|+|.+|++|+.||.|++|+++.
T Consensus 263 spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 263 SLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CTTTCCEEEECSSSCEECCBCCS
T ss_pred cCCCCEEEEEcCCCEEEEEecCC
Confidence 99999999999999999999985
No 62
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=280.79 Aligned_cols=297 Identities=14% Similarity=0.165 Sum_probs=206.3
Q ss_pred eeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCc------------------ccceEEEEEcCCCCe
Q 020461 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGH------------------NGAVWCCDVSRDSMT 66 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h------------------~~~V~~~~~~~~~~~ 66 (326)
+++|..+|.+++|+|+ +.+|++|+.|+.| +||+.+++.+..+..| ...|.+++|+|++++
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 4779999999999996 4789999999999 9999999888877665 578999999999999
Q ss_pred EEEEeCCCcEEEEEccCCcEEEEEec-------------------CCCcceeeeec----CC-eEEEEEcCc------cc
Q 020461 67 LITGSADQTAKLWNVETGAQLFTFNF-------------------DSPARSVDFAV----GD-KLAVITTDP------FM 116 (326)
Q Consensus 67 l~s~~~d~~i~~wd~~~~~~~~~~~~-------------------~~~~~~~~~~~----~~-~~~~~~~~~------~~ 116 (326)
|++++.|++|++||+++++.+....+ ..++..+.|.+ ++ .+++++... ..
T Consensus 226 lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v 305 (902)
T 2oaj_A 226 IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL 305 (902)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE
T ss_pred EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE
Confidence 99999999999999999887654211 11345566643 22 333333111 00
Q ss_pred -eec----------------------------------------------------------------eeeeeeeeccCC
Q 020461 117 -ELN----------------------------------------------------------------SAIHVKRIARDP 131 (326)
Q Consensus 117 -~~~----------------------------------------------------------------~~~~~~~~~~~~ 131 (326)
... ..+.++.+.
T Consensus 306 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~--- 382 (902)
T 2oaj_A 306 TMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP--- 382 (902)
T ss_dssp EEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT---
T ss_pred EEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC---
Confidence 000 000111100
Q ss_pred CCCCCceE-----------------------------------------EEeccCccceeEEEEecCCcEEEEeeCCCcE
Q 020461 132 ADQGGESV-----------------------------------------LILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (326)
Q Consensus 132 ~~~~~~~~-----------------------------------------~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i 170 (326)
.+... ..+.+|...+..++|+|+++.|++|+.|++|
T Consensus 383 ---~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtV 459 (902)
T 2oaj_A 383 ---SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSV 459 (902)
T ss_dssp ---TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEE
T ss_pred ---CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcE
Confidence 00000 0123444455556678999999999999999
Q ss_pred EEEECCCCccccc--ccc------ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc------------------
Q 020461 171 RIWDTETGKLLKE--SDK------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE------------------ 224 (326)
Q Consensus 171 ~~wd~~~~~~~~~--~~~------~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~------------------ 224 (326)
++||+.++..... +.. ..+|...|.+++|+||+.+||+|+.||+|++||+.+++
T Consensus 460 rlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~ 539 (902)
T 2oaj_A 460 RIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFR 539 (902)
T ss_dssp EEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CC
T ss_pred EEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeee
Confidence 9999988743210 100 12788999999999999999999999999999998662
Q ss_pred ---------------------------eEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc
Q 020461 225 ---------------------------LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 276 (326)
Q Consensus 225 ---------------------------~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 276 (326)
++..+. +...+.+++|+|++ .++++ +.|+ .+..||.+..... +
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg-s~D~-tv~lwd~~~~~~~---~--- 610 (902)
T 2oaj_A 540 RFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA-YAAG-SLMLIDRRGPAII---Y--- 610 (902)
T ss_dssp SCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE-ETTS-EEEEEETTTTEEE---E---
T ss_pred eccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE-eCCC-cEEEEECCCCeEE---E---
Confidence 244443 56789999999999 55554 4443 2333443222110 0
Q ss_pred ceeeecccc-ccCcceeEEEEC-----CCC---ceEEeecCCCcEEEeecCC
Q 020461 277 LQEEIGGVK-GHFGPINALAFN-----PDG---KSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 277 ~~~~~~~~~-~h~~~v~~v~~s-----~d~---~~lat~s~Dg~i~l~~~~~ 319 (326)
...+..+. +|.+.|++|+|+ ||| .+|++|+.||+|++|++.|
T Consensus 611 -~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p 661 (902)
T 2oaj_A 611 -MENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILP 661 (902)
T ss_dssp -EEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred -EeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEec
Confidence 00123454 899999999999 885 8999999999999999844
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=255.96 Aligned_cols=292 Identities=14% Similarity=0.167 Sum_probs=209.1
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-----------eeeeccCcc------------cceEEEEEcCCC-
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------RLGTYRGHN------------GAVWCCDVSRDS- 64 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-----------~~~~~~~h~------------~~V~~~~~~~~~- 64 (326)
|.+.|.+++|+|+|++|++|+.||.|+||++.+++ ....+.+|. +.|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 56889999999999999999999999999998877 577889998 889999999998
Q ss_pred -CeEEEEeCCCcEEEEEccCCcEEE---------------------------------------EE--ecCCCcceeeee
Q 020461 65 -MTLITGSADQTAKLWNVETGAQLF---------------------------------------TF--NFDSPARSVDFA 102 (326)
Q Consensus 65 -~~l~s~~~d~~i~~wd~~~~~~~~---------------------------------------~~--~~~~~~~~~~~~ 102 (326)
..|++++.|++|++||+.+++... .+ .+...+.++.++
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 789999999999999997644321 11 245667788888
Q ss_pred cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE-------EeccCccceeEEEEecCC-cEEEEeeCCCcEEEEE
Q 020461 103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-------ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWD 174 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd 174 (326)
++...++.+.+. .+.+|++.. ...... .+.+|...|.+++|+|++ ..|++|+.|++|++||
T Consensus 187 ~~~~~l~s~~d~------~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 187 SDYETYLSADDL------RINLWHLEI-----TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp TTSSEEEEECSS------EEEEEETTE-----EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CCCCEEEEeCCC------eEEEEECCC-----CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 877766655333 344444321 011122 256889999999999998 8999999999999999
Q ss_pred CCCCcccc-ccccccCcce------------eeEEEEEcCCCCeEEEEeCCCeEEEeecCC-cceEEEEeeccc------
Q 020461 175 TETGKLLK-ESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYVTERP------ 234 (326)
Q Consensus 175 ~~~~~~~~-~~~~~~~h~~------------~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~------ 234 (326)
+++++... ......+|.. .|.+++|+|++.+|++++. +.|++||+++ ++++..+.....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccc
Confidence 99877521 1112234544 8999999999999999999 9999999997 777777754332
Q ss_pred ----------eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc---------------------eeeecc
Q 020461 235 ----------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL---------------------QEEIGG 283 (326)
Q Consensus 235 ----------~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------------~~~~~~ 283 (326)
+..++|+|++..+++++. |+ .+..||...+... .+..... ......
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~-dg-~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSY-NN-FFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECS-TT-EEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred ccccccccccceEEEECCCCCEEEEecc-CC-EEEEEEcCCCcce-eeeecccccccccccCCccccccCCccccccccc
Confidence 223899999988866544 33 2445555444321 1100000 000000
Q ss_pred ccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
...+...|..++|+|++.+||+++.++ +.+|.
T Consensus 412 ~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp GCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred ccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 113456799999999999999999876 67765
No 64
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.8e-34 Score=243.71 Aligned_cols=256 Identities=20% Similarity=0.300 Sum_probs=198.9
Q ss_pred CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceecee
Q 020461 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSA 121 (326)
Q Consensus 43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
....++++|.+.|++++|+|++++|+||+.|++|++||..+++....+.. ...+.++.++++...++++.. +..
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~-----d~~ 129 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL-----DNK 129 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST-----TSE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC-----CCC
Confidence 45678899999999999999999999999999999999998887766654 456778888887776665442 233
Q ss_pred eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 201 (326)
+.++.+..............+.+|.+.|.++.|+|++..|++++.|++|++||+++++.+..+ .+|...|.+++++|
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~---~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF---HGHGADVLCLDLAP 206 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECC
T ss_pred EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---cCCCCCeEEEEEEe
Confidence 444444332222222345567789999999999999999999999999999999998876654 47889999999987
Q ss_pred --CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce
Q 020461 202 --DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 278 (326)
Q Consensus 202 --~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (326)
++.+|++|+.||+|++||+++++++..+. +...+++++|+|+++.+++++.+.. +..+|.+. .
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~--v~lwd~~~------------~ 272 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT--CRLYDLRA------------D 272 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTT------------T
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe--EEEEECCC------------C
Confidence 57899999999999999999999988875 4678999999999987776654332 33344333 2
Q ss_pred eeecccc--ccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 279 EEIGGVK--GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 279 ~~~~~~~--~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
..+..+. .+...+.+++|+|++.+|++|+.|++|++|++...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 2222222 23457899999999999999999999999998654
No 65
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-34 Score=251.78 Aligned_cols=289 Identities=12% Similarity=0.147 Sum_probs=212.2
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
..+....|+|++++|++++.|+.|++|++.+++....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 34455678999999999999999999999999999889999999999999999999999999999999999998877776
Q ss_pred e-cCCCcceeeeecCCeEEEE-EcCccceeceeeeeeeeccCCCCCCCceEEEecc------------------------
Q 020461 91 N-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKG------------------------ 144 (326)
Q Consensus 91 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 144 (326)
. +..++.++.++++...++. +.+.. +.+|++. .+.....+..
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~------v~iwd~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGT------IRLWECG------TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSC------EEEEETT------TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCc------EEEeECC------CCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 5 4567888899986655444 33332 3333322 1122222222
Q ss_pred CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCc
Q 020461 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTL 223 (326)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~ 223 (326)
+...+.++.|+|++++|++|+.||.|++||+++++....+. .+|...+.+++|+|++. +|++|+.||.|++||++++
T Consensus 246 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP--SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC--CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc--cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 23556667788999999999999999999999887665543 36888999999999999 9999999999999999987
Q ss_pred ce-EEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC
Q 020461 224 EL-IKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (326)
Q Consensus 224 ~~-~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~ 300 (326)
+. +..+. +...+.++.+. ++..+++ ++.|+. +..||............. .....+.+|.+.|.+++|+|++
T Consensus 324 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~s-~~~d~~-v~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~ 397 (420)
T 3vl1_A 324 ECPVGEFLINEGTPINNVYFA-AGALFVS-SGFDTS-IKLDIISDPESERPAIEF---ETPTFLVSNDDAVSQFCYVSDD 397 (420)
T ss_dssp TSCSEEEEESTTSCEEEEEEE-TTEEEEE-ETTTEE-EEEEEECCTTCCSCEECT---TSCEEECCSSCCCCEEEEECCS
T ss_pred cCchhhhhccCCCCceEEEeC-CCCEEEE-ecCCcc-EEEEeccCCCCCccceec---cCccEEccCCcceEEEEEccCC
Confidence 54 55554 34567777655 4554444 444432 223332211000000000 0111245788999999999999
Q ss_pred c---eEEeecCCCcEEEeecCC
Q 020461 301 K---SFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 301 ~---~lat~s~Dg~i~l~~~~~ 319 (326)
+ .+++++.+|.+++|++++
T Consensus 398 ~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 398 ESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SSSCEEEEEETTTEEEEEESCC
T ss_pred CCcceEEEEcCCceEEEEeccC
Confidence 9 677777899999999875
No 66
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.8e-34 Score=249.96 Aligned_cols=276 Identities=25% Similarity=0.394 Sum_probs=211.9
Q ss_pred eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
.+|...|.+++| ++++|++|+.|++|++||..+++.+..+.+|.+.|.+++| ++++|++|+.||+|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 346667888766 7999999999999999999999999999999999999998 688999999999999999999988
Q ss_pred EEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 87 LFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 87 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
+..+.. ...+.++.+. ++.++.++.+. .+.++++... ........+.+|...|.++.+ +++.+++|+
T Consensus 206 ~~~~~~h~~~v~~l~~~-~~~l~s~s~dg------~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFN-NGMMVTCSKDR------SIAVWDMASP---TDITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp EEEECCCCSCEEEEECC-TTEEEEEETTS------CEEEEECSSS---SCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred EEEEcCCCCcEEEEEEc-CCEEEEeeCCC------cEEEEeCCCC---CCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 877653 4455666665 34444444433 3444544321 111233667889999999998 678999999
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL 244 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~ 244 (326)
.|+.|++||+++++.+..+ .+|...+.++.++ +.++++|+.||+|++||+++++++..+. +...+.++++ ++
T Consensus 274 ~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTL---NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp TTSEEEEEETTTCCEEEEE---ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred CCCeEEEEECCcCcEEEEE---cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence 9999999999998877655 3688899999884 6799999999999999999999998886 4567888888 45
Q ss_pred CeeEEecCCCcceeEeecccCceeeeEeeccccee---------eeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE---------EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 315 (326)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~ 315 (326)
..+++++ .|+ .+++|+..... .+..+.+|.+.|.+++| ++.+|++|+.||+|++|
T Consensus 347 ~~l~sg~-~dg-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iw 410 (435)
T 1p22_A 347 KRIVSGA-YDG-------------KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 410 (435)
T ss_dssp SEEEEEE-TTS-------------CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEE
T ss_pred CEEEEEe-CCC-------------cEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEE
Confidence 5555544 333 23344433222 45567789999999999 78999999999999999
Q ss_pred ecCCCc
Q 020461 316 HFDPDY 321 (326)
Q Consensus 316 ~~~~~~ 321 (326)
++..+.
T Consensus 411 d~~~~~ 416 (435)
T 1p22_A 411 DFLNDP 416 (435)
T ss_dssp C-----
T ss_pred ECCCCC
Confidence 997654
No 67
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1e-34 Score=246.34 Aligned_cols=288 Identities=13% Similarity=0.061 Sum_probs=219.4
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC---eeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~w 79 (326)
.+..+|.+.|.+++|+|++++|++++.|+.|++|++.+++ ....+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3456899999999999999999999999999999998887 3455668999999999999999 99999999999999
Q ss_pred Ec-cCCcEEEEEe--cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCC---CCceEEEeccCccceeEEE
Q 020461 80 NV-ETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ---GGESVLILKGPQGRINRAV 153 (326)
Q Consensus 80 d~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~ 153 (326)
|+ .+++...... +...+.++.+.++..++.++.+. .+.+|++....... .+..+..+. |...+.++.
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG------LIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD 157 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS------EEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred EeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCC------eEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence 99 8887644444 56677888888844444444433 33444433200000 011112223 778899999
Q ss_pred EecCCcEEEEeeCCCcEEEEECCC-CccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCc------ce
Q 020461 154 WGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL------EL 225 (326)
Q Consensus 154 ~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~------~~ 225 (326)
|+|++ +++++.|+.|++||+++ +..... .....|...+.+++++| ++.++++++.||.|++|+++.. +.
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGT-IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCE-EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccce-eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 99987 99999999999999987 543221 12236778899999999 9999999999999999999876 66
Q ss_pred EEEEeec-c---------ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc-CcceeEE
Q 020461 226 IKTYVTE-R---------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINAL 294 (326)
Q Consensus 226 ~~~~~~~-~---------~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v 294 (326)
...+... . .+.+++|+|++..+++++.+. .+++|+....+.+..+.+| .++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~vwd~~~~~~~~~~~~~h~~~v~~~ 300 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG--------------IISCWNLQTRKKIKNFAKFNEDSVVKI 300 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS--------------CEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc--------------eEEEEcCccHhHhhhhhcccCCCceEe
Confidence 6666432 2 799999999988877665432 2455666556666677888 9999999
Q ss_pred EECCCCceEEeecCCCc-EEEeec
Q 020461 295 AFNPDGKSFSSGGEDGY-VRLHHF 317 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~-i~l~~~ 317 (326)
+ |++.+|++|+.||+ .+.+.+
T Consensus 301 ~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 301 A--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp E--ECSSEEEEEEECTHHHHCSSS
T ss_pred c--CCCCeEEEEecCCcccccccc
Confidence 9 99999999999999 655553
No 68
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.2e-35 Score=255.33 Aligned_cols=253 Identities=21% Similarity=0.281 Sum_probs=199.7
Q ss_pred eeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCC-------CeeeeccCcccceEEEEEcCCC-CeEEEEeCCC
Q 020461 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQ 74 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~ 74 (326)
..+.+|...|.+++|+| ++++|++|+.|++|++|++.++ +.+..+.+|...|.+++|+|++ ++|++++.|+
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 35789999999999999 8999999999999999999988 5677889999999999999998 6999999999
Q ss_pred cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (326)
Q Consensus 75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (326)
+|++||+.+++.+..+. ..+|...|.+++|
T Consensus 155 ~i~iwd~~~~~~~~~~~--------------------------------------------------~~~~~~~v~~~~~ 184 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLG--------------------------------------------------PDVHPDTIYSVDW 184 (402)
T ss_dssp CEEEEETTTTEEEEEEC--------------------------------------------------TTTCCSCEEEEEE
T ss_pred EEEEEECCCCCccEEEe--------------------------------------------------cCCCCCceEEEEE
Confidence 99999998765432210 0356778999999
Q ss_pred ecCCcEEEEeeCCCcEEEEECCCCccccccccccCccee-eEEEEEcCCCCeEEEE---eCCCeEEEeecCCcce-EEE-
Q 020461 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTG---SLDKSAKLWDARTLEL-IKT- 228 (326)
Q Consensus 155 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~-v~~v~~s~~~~~l~s~---s~dg~i~iwd~~~~~~-~~~- 228 (326)
+|++.+|++++.|+.|++||+++++.+..+. .+|... +.++.|++++.+|++| +.|+.|++||+++++. +..
T Consensus 185 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~ 262 (402)
T 2aq5_A 185 SRDGALICTSCRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ 262 (402)
T ss_dssp CTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE
T ss_pred CCCCCEEEEEecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE
Confidence 9999999999999999999999887765542 256554 8999999999999999 7999999999998664 222
Q ss_pred -EeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461 229 -YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 307 (326)
Q Consensus 229 -~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s 307 (326)
+.....+.+++++|+++.++++++.|+. +..+|.+.+... ...+.... |..+|.+++|+|++.++++
T Consensus 263 ~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~--------~~~l~~~~-~~~~v~~~~~sp~~~~~~s-- 330 (402)
T 2aq5_A 263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPF--------LHYLSMFS-SKESQRGMGYMPKRGLEVN-- 330 (402)
T ss_dssp ECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTC--------EEEEEEEC-CSSCCSEEEECCGGGSCGG--
T ss_pred eccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcc--------eEeecccc-cCCcccceEEeccccccee--
Confidence 2345678999999999998877654542 223332221100 11122222 5689999999999999875
Q ss_pred CCCcEEEeecCCC
Q 020461 308 EDGYVRLHHFDPD 320 (326)
Q Consensus 308 ~Dg~i~l~~~~~~ 320 (326)
.|+.+++|++...
T Consensus 331 ~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 331 KCEIARFYKLHER 343 (402)
T ss_dssp GTEEEEEEEEETT
T ss_pred cceeEEEEEcCCC
Confidence 5679999998764
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.2e-33 Score=247.04 Aligned_cols=278 Identities=23% Similarity=0.402 Sum_probs=217.7
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|...|.+++|+ +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+ ++.+++++.|++|++||+.+
T Consensus 153 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~ 228 (445)
T 2ovr_B 153 RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET 228 (445)
T ss_dssp EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS
T ss_pred EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC
Confidence 4567899999999997 5699999999999999999999999999999999999985 56799999999999999999
Q ss_pred CcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 84 GAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
++.+..+.. ..++.++.+ .+..++..+.+. .+.++++. .+..+..+.+|...|.++.+ ++..++
T Consensus 229 ~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg------~i~iwd~~------~~~~~~~~~~~~~~v~~~~~--~~~~l~ 293 (445)
T 2ovr_B 229 GQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDF------MVKVWDPE------TETCLHTLQGHTNRVYSLQF--DGIHVV 293 (445)
T ss_dssp CCEEEEEECCSSCEEEEEE-CSSCEEEEETTS------CEEEEEGG------GTEEEEEECCCSSCEEEEEE--CSSEEE
T ss_pred CcEEEEEcCCcccEEEEEE-CCCEEEEEcCCC------EEEEEECC------CCcEeEEecCCCCceEEEEE--CCCEEE
Confidence 888776653 445566665 344454444433 33444432 24567778899999999998 778999
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe----eccceEEE
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAV 238 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~~~~ 238 (326)
+++.|+.|++||+++++.+..+ .+|...+.++.++ +.++++|+.||.|++||+++++++..+. +...+.++
T Consensus 294 ~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 368 (445)
T 2ovr_B 294 SGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 368 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEE---CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred EEeCCCeEEEEECCCCCEEEEE---cCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE
Confidence 9999999999999998877654 3677888888764 5699999999999999999999988886 45678888
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-----cccCcceeEEEECCCCceEEeecCCCc--
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-----KGHFGPINALAFNPDGKSFSSGGEDGY-- 311 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~s~d~~~lat~s~Dg~-- 311 (326)
++++ +.++++ +.|+ .+++|+...++.+..+ .+|.+.|++++|+|++.++|+|+.||+
T Consensus 369 ~~~~--~~l~s~-~~dg-------------~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~ 432 (445)
T 2ovr_B 369 QFNK--NFVITS-SDDG-------------TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 432 (445)
T ss_dssp EECS--SEEEEE-ETTS-------------EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred EECC--CEEEEE-eCCC-------------eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCc
Confidence 8864 444444 4443 2334444333333333 468899999999999999999999998
Q ss_pred --EEEeecCCCc
Q 020461 312 --VRLHHFDPDY 321 (326)
Q Consensus 312 --i~l~~~~~~~ 321 (326)
|.+|+|+++.
T Consensus 433 ~~l~v~df~~~~ 444 (445)
T 2ovr_B 433 TKLLVLDFDVDM 444 (445)
T ss_dssp CEEEEEECCCCC
T ss_pred cEEEEEECCCCC
Confidence 9999999874
No 70
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-33 Score=239.39 Aligned_cols=254 Identities=22% Similarity=0.305 Sum_probs=198.3
Q ss_pred CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceece
Q 020461 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNS 120 (326)
Q Consensus 42 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
.....++++|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.. ...+.++.+++++..++.+.. +.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----d~ 119 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-----DN 119 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET-----TC
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC-----CC
Confidence 345678899999999999999999999999999999999999888777654 455777888887766555432 23
Q ss_pred eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEc
Q 020461 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 200 (326)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s 200 (326)
.+.++.+.... ........+.+|.+.|.++.|++++. +++++.|++|++||+++++....+ .+|...|.+++++
T Consensus 120 ~v~iw~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~~ 193 (340)
T 1got_B 120 ICSIYNLKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF---TGHTGDVMSLSLA 193 (340)
T ss_dssp EEEEEETTTCS--BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEC
T ss_pred eEEEEECccCC--CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE---cCCCCceEEEEEC
Confidence 34455443211 11234566789999999999999765 889999999999999998776654 4789999999999
Q ss_pred CCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee
Q 020461 201 ADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE 279 (326)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (326)
|++.++++|+.|++|++||+++++++..+. +...+.+++|+|+++.+++++.+.. +..+|.+. .+
T Consensus 194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~--v~iwd~~~------------~~ 259 (340)
T 1got_B 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT--CRLFDLRA------------DQ 259 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTT------------TE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc--EEEEECCC------------Cc
Confidence 999999999999999999999999988875 4568999999999988776654332 33334332 22
Q ss_pred eeccc--cccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 280 EIGGV--KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 280 ~~~~~--~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.+..+ ..+...|.+++|+|+|++|++|+.||.|++|+....
T Consensus 260 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 22222 234457999999999999999999999999998654
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.7e-33 Score=247.68 Aligned_cols=279 Identities=23% Similarity=0.370 Sum_probs=217.0
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEc--CCCCeEEEEeCCCcEEEEEc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~--~~~~~l~s~~~d~~i~~wd~ 81 (326)
..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+ ++++++++++.|++|++||+
T Consensus 156 ~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~ 234 (464)
T 3v7d_B 156 LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234 (464)
T ss_dssp EEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEEC
T ss_pred EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeC
Confidence 4567899999999999988 89999999999999999999999999999999999998 57789999999999999999
Q ss_pred cCCcEEEEEe------------------------cCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCC
Q 020461 82 ETGAQLFTFN------------------------FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136 (326)
Q Consensus 82 ~~~~~~~~~~------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (326)
.+++...... +...+.+ +.+ +..++..+.+ ..+.++++. .+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d------~~i~vwd~~------~~ 300 (464)
T 3v7d_B 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYD------NTLIVWDVA------QM 300 (464)
T ss_dssp CCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEETTEEEEEETT------SCEEEEETT------TT
T ss_pred CCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCCCEEEEEeCC------CeEEEEECC------CC
Confidence 8765432111 1111111 222 2223333222 234444432 34
Q ss_pred ceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEE
Q 020461 137 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (326)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~ 216 (326)
..+..+.+|...|.++.|+|+++.+++|+.|+.|++||+++++.+..+ .+|...|.+++++ +.+|++|+.||+|+
T Consensus 301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~--~~~l~s~s~dg~v~ 375 (464)
T 3v7d_B 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL---QGHTALVGLLRLS--DKFLVSAAADGSIR 375 (464)
T ss_dssp EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE---eCCCCcEEEEEEc--CCEEEEEeCCCcEE
Confidence 677788899999999999999999999999999999999998877655 4788999999997 57999999999999
Q ss_pred EeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc-ccccCcceeEEE
Q 020461 217 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALA 295 (326)
Q Consensus 217 iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~ 295 (326)
+||+++++..........+..+++++++..+++++ ++ .+++|+...++.+.. +.+|.+.|++++
T Consensus 376 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--dg-------------~i~iwd~~~g~~~~~~~~~~~~~v~~v~ 440 (464)
T 3v7d_B 376 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--EN-------------QFNIYNLRSGKLVHANILKDADQIWSVN 440 (464)
T ss_dssp EEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE--TT-------------EEEEEETTTCCEEESCTTTTCSEEEEEE
T ss_pred EEECCCCceeeeecCCCCccEEEEEeCCCEEEEec--CC-------------eEEEEECCCCcEEehhhccCCCcEEEEE
Confidence 99999988887777777888899999988776654 22 245566555555543 567889999999
Q ss_pred ECCCCceEEeecCCCcEEEeecC
Q 020461 296 FNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 296 ~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
|+ +..++++++.||.+.+|-+|
T Consensus 441 ~~-~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 441 FK-GKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp EE-TTEEEEEEEETTEEEEEEEE
T ss_pred ec-CCEEEEEEEeCCeEEEEEee
Confidence 97 45667777888877776554
No 72
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8e-34 Score=259.20 Aligned_cols=286 Identities=14% Similarity=0.155 Sum_probs=227.7
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC----CeeeeccCcccc-eEEEEEcC--CCCeEEEEeCCCcEE
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGA-VWCCDVSR--DSMTLITGSADQTAK 77 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~-V~~~~~~~--~~~~l~s~~~d~~i~ 77 (326)
....|...|.+++|+|++++|++++ ++.|++|++.++ +.+..+.+|.+. |.+++|+| ++++|++++.|++|+
T Consensus 13 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 13 QPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CCCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 4456889999999999999999988 789999999999 889999999999 99999999 999999999999999
Q ss_pred EEEccCC--------cEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc
Q 020461 78 LWNVETG--------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148 (326)
Q Consensus 78 ~wd~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (326)
+||+.++ +....+. +..++..+.|++++..+++...... ....+.+++ .+.....+.+|...
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d--------~~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWD--------SGNSLGEVSGHSQR 162 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETT--------TCCEEEECCSCSSC
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEE--------CCCcceeeecCCcc
Confidence 9999755 4444444 4567888889987776655443210 011222222 23567788899999
Q ss_pred eeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcce---eeEEEEEcCC-CCeEEEEeCCCeEEEeecCCc
Q 020461 149 INRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAAD-GSHFLTGSLDKSAKLWDARTL 223 (326)
Q Consensus 149 i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~ 223 (326)
|.++.|+|+++ .+++++.|+.|++||+.+++....+ .+|.. .|.+++|+|+ +.+|++++.|+.|++||++++
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD---RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE---CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee---cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999998 8999999999999999988776654 36777 8999999999 999999999999999999999
Q ss_pred ceEEEE-----eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc----CcceeEE
Q 020461 224 ELIKTY-----VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH----FGPINAL 294 (326)
Q Consensus 224 ~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~v 294 (326)
+.+..+ .+...+.+++++ ++..+++++.+. . +++|+....+.+..+..| ...+.++
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~--~------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA--T------------IRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS--E------------EEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC--c------------EEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 999988 566789999999 777766654432 1 233443333333333333 4678888
Q ss_pred EECCCCceEEeecCCCcEEEeecCC
Q 020461 295 AFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
.|+ ++.++++++.||.|++|++..
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTE
T ss_pred EeC-CCCeEEEEECCCCEEEEECCC
Confidence 886 899999999999999999875
No 73
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=240.33 Aligned_cols=267 Identities=15% Similarity=0.229 Sum_probs=194.9
Q ss_pred CeeeeccCccc-ceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE----ecCCCcceeeeecCCeEEEEEcCccce
Q 020461 43 ERLGTYRGHNG-AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF----NFDSPARSVDFAVGDKLAVITTDPFME 117 (326)
Q Consensus 43 ~~~~~~~~h~~-~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (326)
+++.++++|.+ .|++++|+|++++|++|+.|++|++||+.+++..... .+...+.++.|++++..++.+..
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~---- 81 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF---- 81 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET----
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC----
Confidence 45678899988 8999999999999999999999999999887644322 24567888899987665554432
Q ss_pred eceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEE
Q 020461 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197 (326)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v 197 (326)
+..+.+|.... .....+..+.+|...|.+++|+|++++|++|+.|++|++||++++..........+|...|.++
T Consensus 82 -D~~v~iw~~~~----~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (345)
T 3fm0_A 82 -DATTCIWKKNQ----DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156 (345)
T ss_dssp -TSCEEEEEECC----C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred -CCcEEEEEccC----CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence 22334444321 1123567788999999999999999999999999999999998765433333345789999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEeecCCcceE--EEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee-
Q 020461 198 AKAADGSHFLTGSLDKSAKLWDARTLELI--KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF- 273 (326)
Q Consensus 198 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~- 273 (326)
+|+|++.+|++|+.|++|++||.++++.. ..+. +...+.+++|+|++..+++++.+.. +..||.+.......+.
T Consensus 157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~--v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT--VRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEEEECTTCTTCCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe--EEEeccccCCCCcccee
Confidence 99999999999999999999999877533 3443 4568999999999988776654433 2233321110000000
Q ss_pred --cccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 274 --DKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 274 --~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.......+..+.+ |...|.+++|+|++..||+++.|+.|++|+.++.
T Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 0000111222333 8889999999999999999999999999998754
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6e-33 Score=244.21 Aligned_cols=279 Identities=28% Similarity=0.489 Sum_probs=216.5
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
+..+.+|.+.+.. ++++++++|++|+.|++|++||+.+++.+..+.+|.+.|++++|+ ++++++++.|++|++||+.
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 4678999987533 356679999999999999999999999999999999999999997 5699999999999999999
Q ss_pred CCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
+++.+..+. +...+.++.+. ++.++.++.+. .+.++++. .+.....+.+|...|.++.+ ++..+
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg------~i~~wd~~------~~~~~~~~~~~~~~v~~~~~--~~~~l 252 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDA------TLRVWDIE------TGQCLHVLMGHVAAVRCVQY--DGRRV 252 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE-TTEEEEEETTS------EEEEEESS------SCCEEEEEECCSSCEEEEEE--CSSCE
T ss_pred cCcEEEEECCCCCcEEEEEec-CCEEEEEeCCC------EEEEEECC------CCcEEEEEcCCcccEEEEEE--CCCEE
Confidence 998887765 34556666664 34454444433 34444432 34567788899999999998 67899
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceEEEEe
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTM 240 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 240 (326)
++|+.|+.|++||+++++.+..+ .+|...+.++++ ++.++++|+.|+.|++||+++++++..+.. ...+.++.+
T Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 327 (445)
T 2ovr_B 253 VSGAYDFMVKVWDPETETCLHTL---QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 327 (445)
T ss_dssp EEEETTSCEEEEEGGGTEEEEEE---CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEeEEe---cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence 99999999999999988776655 368889999998 788999999999999999999999888753 345666665
Q ss_pred CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc---ccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK---GHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+ ++.+++++ .|+ .+++|+...++.+..+. .|..+|.+++|+ +.+|++|+.||.|++|++
T Consensus 328 ~--~~~l~~~~-~dg-------------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 328 K--DNILVSGN-ADS-------------TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp E--TTEEEEEE-TTS-------------CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred e--CCEEEEEe-CCC-------------eEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 4 45555443 333 23344443333334444 488999999996 689999999999999999
Q ss_pred CCCce
Q 020461 318 DPDYF 322 (326)
Q Consensus 318 ~~~~~ 322 (326)
.....
T Consensus 390 ~~~~~ 394 (445)
T 2ovr_B 390 KTGEF 394 (445)
T ss_dssp TTCCE
T ss_pred CCCce
Confidence 86543
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=242.01 Aligned_cols=285 Identities=18% Similarity=0.270 Sum_probs=214.1
Q ss_pred eeeeecCCceeEEEEccC---CCEEEeecCCCCeEEEecCC-CCee-eeccCcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461 4 ILMKGHERPLTYLKYNKD---GDLLFSCAKDHTPTVWFADN-GERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~---~~~l~s~~~d~~v~iw~~~~-~~~~-~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~ 78 (326)
.++.+|.+.|.+++|+|+ |++|++|+.|+.|++|++.+ +..+ ..+.+|.+.|.+++|+|++++|++++.|++|++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 567899999999999999 69999999999999999987 5554 778899999999999999999999999999999
Q ss_pred EEccCCcEEEEEecCCCcceeee--ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 79 WNVETGAQLFTFNFDSPARSVDF--AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 79 wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
||+.+++......+..++.++.+ .++...++.+.. +..+.+|++.. +..+..+..+. .+.++.+.
T Consensus 113 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~------~~~~~~~~~~~-~~~~~~~~- 179 (368)
T 3mmy_A 113 WDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW-----DKTLKFWDTRS------SNPMMVLQLPE-RCYCADVI- 179 (368)
T ss_dssp EETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEET-----TSEEEEECSSC------SSCSEEEECSS-CEEEEEEE-
T ss_pred EEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccC-----CCcEEEEECCC------CcEEEEEecCC-CceEEEec-
Confidence 99999988887778888889988 666655544332 22344454432 23444455443 44455444
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe----EEEEeCCCeEEEeecCCc---ceEEEE
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH----FLTGSLDKSAKLWDARTL---ELIKTY 229 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~----l~s~s~dg~i~iwd~~~~---~~~~~~ 229 (326)
...+++++.++.+++||++......... ...+.....++.+.++... +++++.||.|++||++.. +.+..+
T Consensus 180 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 180 -YPMAVVATAERGLIVYQLENQPSEFRRI-ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp -TTEEEEEEGGGCEEEEECSSSCEEEEEC-CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred -CCeeEEEeCCCcEEEEEeccccchhhhc-cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 4578889999999999998654332211 1123344455555554444 999999999999999886 445554
Q ss_pred eecc-------------ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE
Q 020461 230 VTER-------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296 (326)
Q Consensus 230 ~~~~-------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 296 (326)
.... .+.+++++|++..+++++.+. .+++|+....+.+..+.+|..+|++++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 323 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG--------------RFSFWDKDARTKLKTSEQLDQPISACCF 323 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS--------------CEEEEETTTTEEEEECCCCSSCEEEEEE
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCC--------------eEEEEECCCCcEEEEecCCCCCceEEEE
Confidence 4322 599999999988777665433 2456666666667778899999999999
Q ss_pred CCCCceEEeecCCCcEEEeec
Q 020461 297 NPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 297 s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+|+|++||+|+.|+..+.|++
T Consensus 324 s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 324 NHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CTTSSCEEEEECCCSTTCGGG
T ss_pred CCCCCeEEEEecccccccccc
Confidence 999999999999987766554
No 76
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-33 Score=237.09 Aligned_cols=233 Identities=18% Similarity=0.265 Sum_probs=187.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+++|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++.
T Consensus 59 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~ 138 (319)
T 3frx_A 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138 (319)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CcEEEEEecCCCcceeeeecCC-------eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 84 GAQLFTFNFDSPARSVDFAVGD-------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
........+...+..+.+.+.. .++..+.+ ..+.+|++. .......+.+|...|.+++|+|
T Consensus 139 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~sp 206 (319)
T 3frx_A 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLN------QFQIEADFIGHNSNINTLTASP 206 (319)
T ss_dssp CEEEEECCCSSCEEEEEECCC------CCEEEEEETT------SCEEEEETT------TTEEEEEECCCCSCEEEEEECT
T ss_pred CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECC------cchhheeecCCCCcEEEEEEcC
Confidence 4333223344556666666532 23333332 234455442 2345667889999999999999
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-----
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT----- 231 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----- 231 (326)
++++|++|+.|++|++||+++++.+..+. +...+.+++|+|++.+|++++.+ .+++|++..+..+..+..
T Consensus 207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~ 281 (319)
T 3frx_A 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGY 281 (319)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEEEEEEE----CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccc
Confidence 99999999999999999999888766553 34679999999999998888754 599999998877766542
Q ss_pred ----ccceEEEEeCCCCCeeEEecCC
Q 020461 232 ----ERPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 232 ----~~~~~~~~~s~~~~~~~~~~~~ 253 (326)
...+.+++|+|+++.+++++.+
T Consensus 282 ~~~~~~~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 282 SKAAEPHAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp CGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred ccCcCcceeEEEECCCCCEEEEeecC
Confidence 2357899999999988776543
No 77
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.1e-34 Score=245.92 Aligned_cols=278 Identities=20% Similarity=0.303 Sum_probs=205.3
Q ss_pred CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEE
Q 020461 31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAV 109 (326)
Q Consensus 31 d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 109 (326)
+..+..|+..+..+..++.+|.+.|++++|+|++++|+||+.|++|++||+.+++....+.. ...+..+.|++++..++
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE
Confidence 34455677777788889999999999999999999999999999999999999988777754 45677788888777666
Q ss_pred EEcCccceeceeeeeeeeccCCC-CCCCceEEEeccCccceeEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccc--
Q 020461 110 ITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESD-- 185 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~-- 185 (326)
++.. +..+.++.+..... .........+.+|.+.+.++.|.|++ ..|++|+.|++|++||+++++.+..+.
T Consensus 125 s~~~-----d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~ 199 (380)
T 3iz6_a 125 CGGL-----DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE 199 (380)
T ss_dssp ECCS-----SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC
T ss_pred EeeC-----CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc
Confidence 5432 22344444432111 11122344578999999999999975 579999999999999999988765432
Q ss_pred cccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecC-CcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461 186 KETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDAR-TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (326)
Q Consensus 186 ~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d 262 (326)
...+|...|.++++++ ++.+|++|+.|++|++||++ ..+++..+. +...+++++|+|++..+++++.+.. +..||
T Consensus 200 ~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~--i~lwd 277 (380)
T 3iz6_a 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT--CRLFD 277 (380)
T ss_dssp SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC--EEEEE
T ss_pred cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe--EEEEE
Confidence 2257889999999976 88999999999999999998 446666664 5678999999999988776654332 33445
Q ss_pred ccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.+.+... ..+.... .....+...|++++|+|+|++|++|+.||.|++|+....
T Consensus 278 ~~~~~~~-~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 278 MRTGHQL-QVYNREP----DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp TTTTEEE-EEECCCC----SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred CCCCcEE-EEecccc----cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 4443321 1111100 011223446899999999999999999999999997543
No 78
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-33 Score=234.81 Aligned_cols=267 Identities=16% Similarity=0.209 Sum_probs=183.6
Q ss_pred CCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc--EEEEEe---cCCCcceeeeecCCeEEEEEcCcc
Q 020461 41 NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA--QLFTFN---FDSPARSVDFAVGDKLAVITTDPF 115 (326)
Q Consensus 41 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 115 (326)
+.+++.++++|.++|++++|+|+ +|++|+.|++|++||++++. ....+. +..++.++.|+++..+++.+..
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-- 78 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF-- 78 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET--
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC--
Confidence 34567788999999999999987 99999999999999998753 333331 4567888899987765554432
Q ss_pred ceeceeeeeeeeccCCC-CCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCC-ccccccccccCccee
Q 020461 116 MELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKT 193 (326)
Q Consensus 116 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~h~~~ 193 (326)
+..+.+|....... .........+.+|...|.+++|+|++++|++|+.|++|++||++.. +....+....+|...
T Consensus 79 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 79 ---DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp ---TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred ---CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 22344454422110 1123456778899999999999999999999999999999999532 222222234579999
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEeecCCc--ceEEEEe-eccceEEEEeCCCCC-eeEEecCCCcceeEeecccCceee
Q 020461 194 ITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYV-TERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKFE 269 (326)
Q Consensus 194 v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~-~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~d~~~~~~~ 269 (326)
|.+++|+|++.+|++|+.|++|++||.+++ +++..+. +...+.+++|+|+.. ..+++++.|+. +..+|.+.+...
T Consensus 156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~ 234 (330)
T 2hes_X 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDED 234 (330)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTT
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCcc
Confidence 999999999999999999999999998765 5666664 456899999999843 23344444432 222322111000
Q ss_pred eEeecccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 270 AKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 270 ~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
..........+.+ |...|.+++|++++ +||+|+.||+|+||+....
T Consensus 235 ----~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 235 ----DQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ----SCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ----ccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 0000012223333 88999999999765 8999999999999998654
No 79
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.7e-33 Score=239.62 Aligned_cols=221 Identities=21% Similarity=0.359 Sum_probs=178.4
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
..|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....+
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred ecCCCcceeeeec-CCeEEEE-EcCccceeceeeeeeeeccCCCCCCCceEEEe-------ccCccceeEEEEecCCcEE
Q 020461 91 NFDSPARSVDFAV-GDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLIL-------KGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 91 ~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l 161 (326)
.....+..+.+.+ +...++. +.+. .+.+|+... +..+..+ .+|...|.+++|+|++++|
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSET------GFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTS------CEEEEETTT------CCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCC------cEEEEECCC------CcEEEeecccccCCCCCCCCEEEEEECCCCCEE
Confidence 7777777888887 4444443 3333 334443321 2222222 5788999999999999999
Q ss_pred EEeeCCCcEEEEECCCCccccc---------cccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-e
Q 020461 162 ISAGEDAIVRIWDTETGKLLKE---------SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T 231 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~---------~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~ 231 (326)
++|+.|++|++||+++...... .....+|...|.++++++++.+|++|+.|++|++||.++++++..+. +
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 9999999999999976432111 11234788899999999999999999999999999999999888875 4
Q ss_pred ccceEEEEeCCC
Q 020461 232 ERPVNAVTMSPL 243 (326)
Q Consensus 232 ~~~~~~~~~s~~ 243 (326)
...+.++++++.
T Consensus 352 ~~~v~~v~~~~~ 363 (393)
T 1erj_A 352 RNSVISVAVANG 363 (393)
T ss_dssp SSCEEEEEECSS
T ss_pred CCCEEEEEecCC
Confidence 567899998863
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1e-32 Score=260.06 Aligned_cols=301 Identities=18% Similarity=0.235 Sum_probs=222.2
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|..+|.+++|+|++++|++++.|+.|++|+..+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+.+
T Consensus 49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 128 (814)
T 3mkq_A 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128 (814)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG
T ss_pred EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C-cEEEEEe-cCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec-cCccceeEEEEec--C
Q 020461 84 G-AQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGP--L 157 (326)
Q Consensus 84 ~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~--~ 157 (326)
+ .....+. +..++.++.|++ +...++++.. +..+.++++.. +.....+. .+...+..+.|+| +
T Consensus 129 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~v~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLPD 197 (814)
T ss_dssp TSEEEEEEECCSSCEEEEEEETTEEEEEEEEET-----TSEEEEEETTC------SSCSEEEECCCTTCCCEEEECCSTT
T ss_pred CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC-----CCeEEEEECCC------CcceeEEecCCCCCEEEEEEEECCC
Confidence 7 4444443 456778888988 4444443322 22344454321 22233333 4448899999999 8
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceE
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVN 236 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~ 236 (326)
+.++++++.|+.|++||+++++....+ .+|...|.+++|+|++.++++++.||.|++||+.+++.+..+.. ...+.
T Consensus 198 ~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~ 274 (814)
T 3mkq_A 198 KPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274 (814)
T ss_dssp CCEEEEECTTSEEEEEETTTTEEEEEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEE
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEE
Confidence 999999999999999999988766554 36888999999999999999999999999999999998888764 46799
Q ss_pred EEEeCCCCCee-EEecCCCcceeEeecccCceee-----eEee--------------------cccce----eeeccccc
Q 020461 237 AVTMSPLLDHV-VLGGGQDASAVTTTDHRAGKFE-----AKFF--------------------DKILQ----EEIGGVKG 286 (326)
Q Consensus 237 ~~~~s~~~~~~-~~~~~~~~~~~~~~d~~~~~~~-----~~~~--------------------~~~~~----~~~~~~~~ 286 (326)
+++++|++..+ ++++..++..+........... ..++ ..... .....+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (814)
T 3mkq_A 275 CIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354 (814)
T ss_dssp EEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECC
T ss_pred EEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCC
Confidence 99999998865 4444443332221111000000 0000 00000 00111234
Q ss_pred cCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 287 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 287 h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
|...+.+++|+|+|+++++++ ||.+.+|++..
T Consensus 355 ~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 355 VDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp CSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred CccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 555678888888888888887 78888887653
No 81
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-33 Score=243.91 Aligned_cols=285 Identities=14% Similarity=0.156 Sum_probs=213.0
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCC---eeeeccC------------------------------------
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRG------------------------------------ 50 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~------------------------------------ 50 (326)
..++.+++|+|+|++|+++ .++.|++|++.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977665 57799999999998 6655543
Q ss_pred ------------------cccceEEEEEcCCCCeE-EEEeCCCcEEEEEcc--CCcEEEEEe---cCCCcceeeeecCCe
Q 020461 51 ------------------HNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVE--TGAQLFTFN---FDSPARSVDFAVGDK 106 (326)
Q Consensus 51 ------------------h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~~~~~~~~---~~~~~~~~~~~~~~~ 106 (326)
|.+.|.+++|+|++++| ++++.|++|++||+. +++.+..+. +...+.++.|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 33379999999999996 899999999999999 777776653 456677888998776
Q ss_pred EEEEEcCccceeceeeeeeeeccCCCCCCCc-eEEEeccCccceeEEEEecC---CcEEEEeeCCCcEEEEECCCCcccc
Q 020461 107 LAVITTDPFMELNSAIHVKRIARDPADQGGE-SVLILKGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKLLK 182 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~~~~ 182 (326)
.++++.. ...+..+.+.... ... ....+.+|...|.+++|+|+ +++|++|+.|++|++||+++++.+.
T Consensus 163 ~l~~~~~-----~g~v~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 163 TVIIADK-----FGDVYSIDINSIP---EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp EEEEEET-----TSEEEEEETTSCC---CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EEEEEeC-----CCcEEEEecCCcc---cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 6655432 1222333322111 111 22355688999999999999 8999999999999999999887665
Q ss_pred ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--------------------------cceE
Q 020461 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------------------RPVN 236 (326)
Q Consensus 183 ~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------------------~~~~ 236 (326)
.+ ..+|...|.+++|+ ++.+|++|+.|++|++||+++++++..+... ..+.
T Consensus 235 ~~--~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 235 KW--LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EE--CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred ee--ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 42 24789999999999 9999999999999999999999988887521 3578
Q ss_pred EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecc--cce---eeeccccccCcceeEEEECCCCceEEeecC---
Q 020461 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK--ILQ---EEIGGVKGHFGPINALAFNPDGKSFSSGGE--- 308 (326)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~h~~~v~~v~~s~d~~~lat~s~--- 308 (326)
.++++|++..+++++..++. + ++|+. ... ..+..+.+| +.|.+++|+|++.++++++.
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~-i------------~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~ 377 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKC-I------------IILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESS 377 (450)
T ss_dssp EEEECSSSSEEEEEETTCSE-E------------EEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCC
T ss_pred EEEEeCCCCEEEEEECCCCe-E------------EEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCC
Confidence 89999999888877633331 2 23332 111 334445667 78999999997666665554
Q ss_pred ---CCcEEEeecCCC
Q 020461 309 ---DGYVRLHHFDPD 320 (326)
Q Consensus 309 ---Dg~i~l~~~~~~ 320 (326)
+..|++|.++.+
T Consensus 378 ~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 378 GVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSCCCSEEEEEEETT
T ss_pred CCCCcceEEEEEEcC
Confidence 556899998765
No 82
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.3e-34 Score=249.15 Aligned_cols=237 Identities=14% Similarity=0.141 Sum_probs=162.4
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe-----eeeccCcccceEEEEEcC--------CCCeEEEEeCCCcE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-----LGTYRGHNGAVWCCDVSR--------DSMTLITGSADQTA 76 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-----~~~~~~h~~~V~~~~~~~--------~~~~l~s~~~d~~i 76 (326)
........+++++++|++++.|++|+||+..+++. +..+.+|.+.|++++|+| |+++|+|||.|++|
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 33344445566778999999999999999988864 345789999999999997 78999999999999
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
|+||+.++.... .+.+|.+.+.+++|+|
T Consensus 169 ~~Wd~~~~~~~~----------------------------------------------------~~~~~~~~v~~v~~~p 196 (393)
T 4gq1_A 169 IIWRLTDEGPIL----------------------------------------------------AGYPLSSPGISVQFRP 196 (393)
T ss_dssp EEEEEETTEEEE----------------------------------------------------EEEECSSCEEEEEEET
T ss_pred EEEECCCCceee----------------------------------------------------eecCCCCCcEEEEECC
Confidence 999987654321 2234667888999999
Q ss_pred CCc-EEEEeeCCCcEEEEECCCCccccccc----------------------cccCcceeeEEEEEc-CCCCeEEEEeCC
Q 020461 157 LNR-TIISAGEDAIVRIWDTETGKLLKESD----------------------KETGHKKTITSLAKA-ADGSHFLTGSLD 212 (326)
Q Consensus 157 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~----------------------~~~~h~~~v~~v~~s-~~~~~l~s~s~d 212 (326)
++. +|++|+.|++|++||+++++...... ...+|...+.++.|+ +++..+++++.|
T Consensus 197 ~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d 276 (393)
T 4gq1_A 197 SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKS 276 (393)
T ss_dssp TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTT
T ss_pred CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCC
Confidence 875 79999999999999998776433211 123577788889876 799999999999
Q ss_pred CeEEEeecCCcceEEEEee-ccceEEEE------------------eCCC-CCeeEEecCCCcceeEeecccCceeeeEe
Q 020461 213 KSAKLWDARTLELIKTYVT-ERPVNAVT------------------MSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKF 272 (326)
Q Consensus 213 g~i~iwd~~~~~~~~~~~~-~~~~~~~~------------------~s~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (326)
+++++||+++++....+.. ...+..+. ++|. ...++++++.|+ .+++
T Consensus 277 ~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-------------~V~l 343 (393)
T 4gq1_A 277 GAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG-------------LIQL 343 (393)
T ss_dssp SEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT-------------EEEE
T ss_pred CCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC-------------EEEE
Confidence 9999999988765554421 11222222 2222 333444444443 3456
Q ss_pred ecccceeeeccccccCcceeEEEECCCCceEEeecCCCc
Q 020461 273 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY 311 (326)
Q Consensus 273 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~ 311 (326)
|+...++....+.+|..+|++++|||||++||+++.||.
T Consensus 344 wd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 344 INTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp EETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred EECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 666555555556778899999999999999999998775
No 83
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-32 Score=233.68 Aligned_cols=231 Identities=18% Similarity=0.242 Sum_probs=178.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+..
T Consensus 70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CcEEEEEe----cCCCcceeeeecCC-----------eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc
Q 020461 84 GAQLFTFN----FDSPARSVDFAVGD-----------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148 (326)
Q Consensus 84 ~~~~~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (326)
. ...... +...+.++.+.+.. .++..+.+ ..+.+|+. .......+.+|...
T Consensus 150 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~-------~~~~~~~~~~h~~~ 215 (343)
T 2xzm_R 150 E-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD------GRLKVWNT-------NFQIRYTFKAHESN 215 (343)
T ss_dssp C-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT------SEEEEEET-------TTEEEEEEECCSSC
T ss_pred C-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC------CEEEEEcC-------CCceeEEEcCcccc
Confidence 3 222221 23345566666543 23333333 23444441 23456678899999
Q ss_pred eeEEEEecCCcEEEEeeCCCcEEEEECCCCc-cccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (326)
Q Consensus 149 i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (326)
|.+++|+|++++|++|+.|++|++||+.... ....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++...
T Consensus 216 v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF----DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE----ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCS
T ss_pred ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee----cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCc
Confidence 9999999999999999999999999995432 22222 2445699999999998765 4568889999998876544
Q ss_pred --EEe------------eccceEEEEeCCCCCeeEEecCC
Q 020461 228 --TYV------------TERPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 228 --~~~------------~~~~~~~~~~s~~~~~~~~~~~~ 253 (326)
.+. +...+.+++|+|+++.+++++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D 330 (343)
T 2xzm_R 291 VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD 330 (343)
T ss_dssp EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT
T ss_pred eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC
Confidence 322 23458899999999888776543
No 84
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-31 Score=225.23 Aligned_cols=252 Identities=25% Similarity=0.361 Sum_probs=199.0
Q ss_pred CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceecee
Q 020461 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSA 121 (326)
Q Consensus 43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
....++.+|.+.|.+++|+|++++|++++.|++|++|++.+++....+. +...+.++.|.+++..++.+.. +..
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~ 88 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD-----DKT 88 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC-----CCE
Confidence 4456788999999999999999999999999999999999988777665 4556778888887665554432 234
Q ss_pred eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 201 (326)
+.+|++. .+..+..+.+|...|.++.|+|++++|++|+.|++|++||+++++....+ ..|...+.+++++|
T Consensus 89 i~vwd~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~ 159 (312)
T 4ery_A 89 LKIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNR 159 (312)
T ss_dssp EEEEETT------TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECT
T ss_pred EEEEECC------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcEEEEEEcC
Confidence 4555442 34567788999999999999999999999999999999999988776554 36888999999999
Q ss_pred CCCeEEEEeCCCeEEEeecCCcceEEEEee--ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee
Q 020461 202 DGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE 279 (326)
Q Consensus 202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (326)
++.+|++++.|+.|++||+++++++..+.. ..++..++++|++..+++++.+. .+++|+....+
T Consensus 160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------------~i~iwd~~~~~ 225 (312)
T 4ery_A 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN--------------TLKLWDYSKGK 225 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT--------------EEEEEETTTTE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC--------------eEEEEECCCCc
Confidence 999999999999999999999988887643 35688999999998877765433 23445544444
Q ss_pred eeccccccCcceeE--EEE-CCCCceEEeecCCCcEEEeecCCCce
Q 020461 280 EIGGVKGHFGPINA--LAF-NPDGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 280 ~~~~~~~h~~~v~~--v~~-s~d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
.+..+.+|...+.. ..| .+++.+|++|+.||.|++|++.....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence 45555666554322 334 47889999999999999999987643
No 85
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=7.3e-32 Score=230.30 Aligned_cols=293 Identities=8% Similarity=-0.001 Sum_probs=199.0
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVET 83 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~ 83 (326)
.+.+|...|.+++|+|||++|++|+.++ ++||+..+++.+..... ..+..+++.++++.+ ++++.|++|++||+.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 3478999999999999999999998775 78999988766544322 247778888888776 6678889999999999
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
++.+..+.+..++.++.+.++... ++. ...+.++++.... ..+..+.. +...+++++ ..++.
T Consensus 91 ~~~~~~~~~~~~v~~v~~~~~~~~-~~~-------~~~i~i~d~~~~~-----~~~~~~~~---~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 91 KQDVSRIKVDAPVKDLFLSREFIV-VSY-------GDVISVFKFGNPW-----KRITDDIR---FGGVCEFSN--GLLVY 152 (355)
T ss_dssp TEEEEEEECSSCEEEEEECSSEEE-EEE-------TTEEEEEESSTTC-----CBSSCCEE---EEEEEEEET--TEEEE
T ss_pred CcEEEEEECCCceEEEEEcCCEEE-EEE-------cCEEEEEECCCCc-----eeeEEecc---CCceEEEEc--cEEEE
Confidence 999988888777777777654332 222 2234455443220 11111111 334456676 45554
Q ss_pred --eeCCCcEEEEECCCCcccc------------c-cccccCcceeeEEEEEcCCCCeEEEEeCCCe-EEEeecCCcceEE
Q 020461 164 --AGEDAIVRIWDTETGKLLK------------E-SDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIK 227 (326)
Q Consensus 164 --~~~d~~i~~wd~~~~~~~~------------~-~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~-i~iwd~~~~~~~~ 227 (326)
|+.||.|++||+++++... . .....+|...|++++|+|++.+|++|+.|++ |++||+++++++.
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 6899999999998764110 0 2223589999999999999999999999998 9999999999999
Q ss_pred EEe---eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeee-Eeecc---------c-ceeeeccccccCcceeE
Q 020461 228 TYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-KFFDK---------I-LQEEIGGVKGHFGPINA 293 (326)
Q Consensus 228 ~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~---------~-~~~~~~~~~~h~~~v~~ 293 (326)
.+. +...+.+++|+|++..+++++.+.. +..||.+...... ..... . ..........+..+...
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWT--LHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK 310 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCE--EEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCE
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCE--EEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceE
Confidence 987 6778999999999988777654432 3344433221100 00000 0 00000011122334577
Q ss_pred EEECCCCceEEeecCCCcEEEeecCCC
Q 020461 294 LAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 294 v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
++|+||++++++++.||.+++|.+.+.
T Consensus 311 ~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 311 IAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 999999999999999999999987653
No 86
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.1e-32 Score=235.19 Aligned_cols=250 Identities=19% Similarity=0.246 Sum_probs=192.2
Q ss_pred eeEEEEccCCCE-EEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcE
Q 020461 13 LTYLKYNKDGDL-LFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 13 i~~~~~s~~~~~-l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
..+++++|+... +++++.||.|+||++.+. ..+..+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 456888888764 446889999999998654 23556789999999999999 899999999999999999987532
Q ss_pred EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEee
Q 020461 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAG 165 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~ 165 (326)
.. ........+.+|...|.+++|+|++ ..|++++
T Consensus 117 ~~---------------------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 117 VL---------------------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp SS---------------------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred cc---------------------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence 10 0002344567889999999999998 6999999
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE-e-ecc-ceEEEEeCC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-V-TER-PVNAVTMSP 242 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~-~~~~~~~s~ 242 (326)
.|+.|++||+++++....+. ..+|...|.+++|+|++.+|++++.|+.|++||+++++.+..+ . +.. .+..++|+|
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLG-PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230 (402)
T ss_dssp TTSCEEEEETTTTEEEEEEC-TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS
T ss_pred CCCEEEEEECCCCCccEEEe-cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC
Confidence 99999999999887765542 1368899999999999999999999999999999999998887 2 222 378999999
Q ss_pred CCCeeEEec--CCCcceeEeecccCceeeeEeecccceee-ecc-ccccCcceeEEEECCCCceEE-eecCCCcEEEeec
Q 020461 243 LLDHVVLGG--GQDASAVTTTDHRAGKFEAKFFDKILQEE-IGG-VKGHFGPINALAFNPDGKSFS-SGGEDGYVRLHHF 317 (326)
Q Consensus 243 ~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~-~~~h~~~v~~v~~s~d~~~la-t~s~Dg~i~l~~~ 317 (326)
++..++++. +.+ ..+ ++|+...... ... ...|...|.+++|+|++++|+ +|+.||.|++|++
T Consensus 231 ~~~~l~~g~~~~~d-~~i------------~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 231 EGKILTTGFSRMSE-RQV------------ALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp TTEEEEEEECTTCC-EEE------------EEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred CCcEEEEeccCCCC-ceE------------EEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence 977666552 222 223 3343322111 111 124667899999999999986 5668999999999
Q ss_pred CCCc
Q 020461 318 DPDY 321 (326)
Q Consensus 318 ~~~~ 321 (326)
+...
T Consensus 298 ~~~~ 301 (402)
T 2aq5_A 298 TSEA 301 (402)
T ss_dssp CSST
T ss_pred cCCC
Confidence 8754
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.7e-32 Score=225.84 Aligned_cols=211 Identities=20% Similarity=0.256 Sum_probs=161.9
Q ss_pred eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (326)
Q Consensus 46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..+.+|.+.|.+++|+|++++|++|+.|++|++||+.++..
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~--------------------------------------- 43 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH--------------------------------------- 43 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------------------------------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------------------------------
Confidence 45789999999999999999999999999999999864210
Q ss_pred eeccCCCCCCCceEEEeccCccceeEEEEecC--CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-
Q 020461 126 RIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD- 202 (326)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~- 202 (326)
..+..+.+|.++|.+++|+|. +.+|++|+.|++|++||+++++... .....+|...|.+++|+|+
T Consensus 44 -----------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~-~~~~~~h~~~v~~v~~~p~~ 111 (297)
T 2pm7_B 44 -----------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ-IAVHAVHSASVNSVQWAPHE 111 (297)
T ss_dssp -----------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC-CEEECCCSSCEEEEEECCGG
T ss_pred -----------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE-EEEeecCCCceeEEEeCcCC
Confidence 123346789999999999863 7899999999999999998764321 1123468899999999997
Q ss_pred -CCeEEEEeCCCeEEEeecCCcceE--EEE-eeccceEEEEeCCCC------------CeeEEecCCCcceeEeecccCc
Q 020461 203 -GSHFLTGSLDKSAKLWDARTLELI--KTY-VTERPVNAVTMSPLL------------DHVVLGGGQDASAVTTTDHRAG 266 (326)
Q Consensus 203 -~~~l~s~s~dg~i~iwd~~~~~~~--~~~-~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~d~~~~ 266 (326)
+.+|++|+.|++|++||++++... ..+ .+...+.+++|+|+. ...+++++.|+.
T Consensus 112 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~---------- 181 (297)
T 2pm7_B 112 YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL---------- 181 (297)
T ss_dssp GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSC----------
T ss_pred CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCc----------
Confidence 889999999999999999876321 222 345679999999973 123444444432
Q ss_pred eeeeEeecccce----eeeccccccCcceeEEEECCCC---ceEEeecCCCcEEEeecCCC
Q 020461 267 KFEAKFFDKILQ----EEIGGVKGHFGPINALAFNPDG---KSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 267 ~~~~~~~~~~~~----~~~~~~~~h~~~v~~v~~s~d~---~~lat~s~Dg~i~l~~~~~~ 320 (326)
+++|+.... .....+.+|.+.|++++|+|++ .+||+|+.|++|+||+++..
T Consensus 182 ---v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 182 ---VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp ---EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ---EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 233432221 1334577899999999999985 89999999999999998763
No 88
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-33 Score=235.23 Aligned_cols=241 Identities=10% Similarity=-0.017 Sum_probs=180.4
Q ss_pred EccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcc
Q 020461 18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR 97 (326)
Q Consensus 18 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 97 (326)
+.+++++|++|+.|++|++||+.+++.+..+. .+.|.++.++|+ +++++.|++|++|+......+ +...
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~--~~~~---- 112 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI--LDSK---- 112 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE--EETT----
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE--eecC----
Confidence 34678899999999999999999999888776 567888889887 999999999999998652211 1100
Q ss_pred eeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEEEEec--CCcEEEEeeCCCcEEEEE
Q 020461 98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGP--LNRTIISAGEDAIVRIWD 174 (326)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~--~~~~l~s~~~d~~i~~wd 174 (326)
.+..+.. ..+|...|.++.|+| ++.++++++.|++|++||
T Consensus 113 -------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 155 (343)
T 3lrv_A 113 -------------------------------------TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS 155 (343)
T ss_dssp -------------------------------------TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEE
T ss_pred -------------------------------------CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEE
Confidence 0111111 235667899999999 999999999999999999
Q ss_pred CCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE-EEEee--ccceEEEEeCCCCCeeEEec
Q 020461 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI-KTYVT--ERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 175 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~--~~~~~~~~~s~~~~~~~~~~ 251 (326)
+++++...... ..|...+++++|+|++.+|++|+.||.|++||+++++.+ ..+.. ..++.+++|+|++..+++++
T Consensus 156 ~~~~~~~~~~~--~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 156 YEDDSQYIVHS--AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp SSSSCEEEEEC--CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred CCCCcEEEEEe--cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence 99887754332 235567999999999999999999999999999999887 56643 67899999999998887766
Q ss_pred CCCcceeEeecccCceeeeEeecccceeeeccccccCccee--EEEECCCCceEEeecC-CCcEEEeecCCC
Q 020461 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN--ALAFNPDGKSFSSGGE-DGYVRLHHFDPD 320 (326)
Q Consensus 252 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~v~~s~d~~~lat~s~-Dg~i~l~~~~~~ 320 (326)
++ .+..||.+..... ..+..+..|...+. +++|+|+|++||+++. |+.|+||+++..
T Consensus 234 -~~--~v~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 234 -DQ--TVVCFDLRKDVGT---------LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp -SS--BEEEEETTSSTTC---------BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred -CC--eEEEEEcCCCCcc---------eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 33 4555554433210 11111222434444 6999999999999998 999999998654
No 89
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=241.15 Aligned_cols=264 Identities=12% Similarity=0.113 Sum_probs=191.3
Q ss_pred eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
+.-...|.+++|||||+++||++.|++|+ +.+.++ .+++|...|++++|+|+| .++++++|+.+..+
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~- 78 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG- 78 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-
Confidence 34556789999999999999999999999 655444 447899999999999887 56666666654322
Q ss_pred EEEEecCCCcceeeeecCCeEEEE-EcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc-----ceeEEEEecCCcE
Q 020461 87 LFTFNFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-----RINRAVWGPLNRT 160 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~ 160 (326)
+..+.....+.++.|+|++..+++ +.++. +.+|+.. ..+..+. |.. .+.+++|||+|++
T Consensus 79 ~~~~~~~~~V~~vawSPdG~~LAs~s~dg~------V~iwd~~--------~~l~~l~-~~~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 79 LLNSQPVCYPRVCKPSPIDDWMAVLSNNGN------VSVFKDN--------KMLTNLD-SKGNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp SSTTSCSCCEEEEEECSSSSCEEEEETTSC------EEEEETT--------EEEEECC-CSSCSTTTCEEEEEECSSSSC
T ss_pred EeecCCCCcEEEEEECCCCCEEEEEeCCCc------EEEEeCC--------ceeeecc-CCCccccccEEEEEEcCCCCE
Confidence 222233456777888887664443 33332 2233210 1333344 544 5999999999999
Q ss_pred EEEeeCCCcEEEEECCCCcc-------ccccc-cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce---EEEE
Q 020461 161 IISAGEDAIVRIWDTETGKL-------LKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL---IKTY 229 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~-------~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~ 229 (326)
|++|+.||+|++||+.+++. +.++. ...+|...|.+++|+||| +++++.|++|++||+.+++. .+++
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeee
Confidence 99999999999999988753 22221 124688999999999999 89999999999999988774 2445
Q ss_pred e--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE--CCCCceEEe
Q 020461 230 V--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF--NPDGKSFSS 305 (326)
Q Consensus 230 ~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s~d~~~lat 305 (326)
. +...+..++|+ +..+++++ . + .+++|+...++......+|.+.|..++| +||+..|++
T Consensus 222 ~~~h~~~V~svaFs--g~~LASa~-~-~-------------tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~ 284 (588)
T 2j04_A 222 QNASRRKITDLKIV--DYKVVLTC-P-G-------------YVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLM 284 (588)
T ss_dssp ECCCSSCCCCEEEE--TTEEEEEC-S-S-------------EEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEE
T ss_pred cccccCcEEEEEEE--CCEEEEEe-C-C-------------eEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEE
Confidence 3 34579999998 45555553 2 1 3566665544442333389999999999 999999999
Q ss_pred ecCCCcEEEeecC
Q 020461 306 GGEDGYVRLHHFD 318 (326)
Q Consensus 306 ~s~Dg~i~l~~~~ 318 (326)
+++||+ |||.++
T Consensus 285 a~edG~-klw~~d 296 (588)
T 2j04_A 285 SNKTSY-KVLLED 296 (588)
T ss_dssp CSSCEE-EEEESS
T ss_pred EcCCCC-EEEeec
Confidence 999999 999987
No 90
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.4e-31 Score=219.18 Aligned_cols=258 Identities=12% Similarity=0.103 Sum_probs=168.9
Q ss_pred eEEEEccCCC---EEEeecCCCCeEEEecCCC---CeeeeccCcccceE-------------------------EEEEcC
Q 020461 14 TYLKYNKDGD---LLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVW-------------------------CCDVSR 62 (326)
Q Consensus 14 ~~~~~s~~~~---~l~s~~~d~~v~iw~~~~~---~~~~~~~~h~~~V~-------------------------~~~~~~ 62 (326)
.++.|-.-|- .+++++.. +|++|+..++ ++++++..|..+|. +++++|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 43 SAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp EEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred eeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 3444544443 57777764 8999999999 88888887776554 455556
Q ss_pred C----CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCce
Q 020461 63 D----SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138 (326)
Q Consensus 63 ~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (326)
| ++.+++++.+ +++|++.+++.+..... ..+..++.+.+.. .++.
T Consensus 122 d~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~------------------------g~d~~V~~~~~s~-----dG~~ 170 (356)
T 2w18_A 122 DDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGT------------------------LSDQQVEVMTFAE-----DGGG 170 (356)
T ss_dssp ----CCEEEEEEEEE--EEEEEETTTEEEEEESS------------------------STTCEEEEEEECT-----TSCE
T ss_pred CccccccEEEeCCCe--EEEEecCCCcEEEeccc------------------------CCCCcEEEEEECC-----CCce
Confidence 6 6667776643 66777766655443210 0112222333321 2345
Q ss_pred EEEeccCccceeEEEEec---CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE---------
Q 020461 139 VLILKGPQGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF--------- 206 (326)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~---~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l--------- 206 (326)
+..+.+|...+..++|+| ++..|++++.|++|+|||++++++++++.....+...+.+++|+|+|.++
T Consensus 171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~ 250 (356)
T 2w18_A 171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK 250 (356)
T ss_dssp EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence 556678888899999999 67899999999999999999999888764322233467788999999876
Q ss_pred ---EEEeCCCeEEEeecCCcceEEEEee----ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee
Q 020461 207 ---LTGSLDKSAKLWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE 279 (326)
Q Consensus 207 ---~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (326)
++|+.|++|++||.++++++..+.. ......+..+..+. ++++++.|+ .+++|+..+++
T Consensus 251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~Dg-------------TIkIWDl~tGk 316 (356)
T 2w18_A 251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSG-------------TIAIWDLLLGQ 316 (356)
T ss_dssp -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTS-------------CEEEEETTTCS
T ss_pred ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCC-------------cEEEEECCCCc
Confidence 5688999999999999988765421 11111111111111 233333332 36788888888
Q ss_pred eeccccccCccee-EEEECCCCceEEeecCCCcEEEeec
Q 020461 280 EIGGVKGHFGPIN-ALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 280 ~~~~~~~h~~~v~-~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
.+..+.+|...+. .++|||||++||+|+.|++||||++
T Consensus 317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 8888889988766 5899999999999999999999986
No 91
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-32 Score=238.02 Aligned_cols=243 Identities=12% Similarity=0.127 Sum_probs=177.8
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc-----ceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-----AVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
+|...|.+++|||+|++||+++.||.|++|+.+. ++..+. |.. .|.+++|||||++|++|+.||+|++||++
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688899999999999999999999999999654 666677 665 49999999999999999999999999998
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE----eccCccceeEEEEecCC
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI----LKGPQGRINRAVWGPLN 158 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~ 158 (326)
+++.. .+ . + ..+.. ..+|.++|.+++|+|++
T Consensus 160 ~~~l~------~~----------~--------~---------------------i~l~ti~~~~~gh~~~V~sVawSPdg 194 (588)
T 2j04_A 160 KNSEN------TP----------E--------F---------------------YFESSIRLSDAGSKDWVTHIVWYEDV 194 (588)
T ss_dssp CCTTT------CC----------C--------C---------------------EEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred CCccc------cc----------c--------c---------------------eeeeeeecccccccccEEEEEEcCCc
Confidence 75320 00 0 0 00111 14677899999999998
Q ss_pred cEEEEeeCCCcEEEEECCCCccc---cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce-EEEEeeccc
Q 020461 159 RTIISAGEDAIVRIWDTETGKLL---KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTYVTERP 234 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~ 234 (326)
+++++.|++|++||+..++.. .++. .+|...|.+++|+ +..||+++ +++|++||+.+++. ...+.+...
T Consensus 195 --Laass~D~tVrlWd~~~~~~~~~~~tL~--~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 195 --LVAALSNNSVFSMTVSASSHQPVSRMIQ--NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp --EEEEETTCCEEEECCCSSSSCCCEEEEE--CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred --EEEEeCCCeEEEEECCCCccccceeeec--ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 888999999999999876632 1121 3688899999999 57899887 69999999998887 444456678
Q ss_pred eEEEEe--CCCCCeeEEecCCCcceeEeec-------ccC---ceeeeEeecccceeeeccccccCcceeEEEECCCCce
Q 020461 235 VNAVTM--SPLLDHVVLGGGQDASAVTTTD-------HRA---GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 302 (326)
Q Consensus 235 ~~~~~~--s~~~~~~~~~~~~~~~~~~~~d-------~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~ 302 (326)
+..+++ +|++..++++.. ++.-+...| ... ..-.+++|+.... ++..+.+ ...|.+++|||||+.
T Consensus 268 V~~va~~~s~d~~~La~a~e-dG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~ 344 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNK-TSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYS 344 (588)
T ss_dssp CCEEEETTCSSCEEEEECSS-CEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSE
T ss_pred EEEEEeeeCCCCCEEEEEcC-CCCEEEeeccEEECCCceEEEEcCCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCE
Confidence 999999 998877666553 332122111 100 0001233443222 2333333 567999999999999
Q ss_pred EEeecC
Q 020461 303 FSSGGE 308 (326)
Q Consensus 303 lat~s~ 308 (326)
+|+++.
T Consensus 345 lA~~~~ 350 (588)
T 2j04_A 345 IAIVYD 350 (588)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999985
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=233.51 Aligned_cols=288 Identities=15% Similarity=0.229 Sum_probs=202.7
Q ss_pred EEccCCCEEEeecCCCCeEEEecCCCCeeeec-cCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccC---Cc---EEE
Q 020461 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET---GA---QLF 88 (326)
Q Consensus 17 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~---~~---~~~ 88 (326)
.|+|+++.+++++ .|+ .+++.+..+ .+|.+.|.+++|+| ++++|++|+.|++|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4677788777665 487 567888888 88999999999999 999999999999999999976 32 344
Q ss_pred EEecCCCcceeeeecCCeEEEE-EcCccceeceeeeeeeeccCCCC-----CCCceEEEec--c--CccceeEEE--Eec
Q 020461 89 TFNFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPAD-----QGGESVLILK--G--PQGRINRAV--WGP 156 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~--~~~~i~~~~--~~~ 156 (326)
.+.+..++.++.+.++...+++ +.+. .+.+|++...... ..+..+..+. . +...+.++. ++|
T Consensus 107 ~~~h~~~v~~~~~~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNFDAFAVSSKDG------QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTS------EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred eccCCCCEEEEEEeCCCCEEEEEeCCC------EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence 4456778889999886654444 3333 3334433210000 0001111111 1 445666666 567
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe--eccc
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERP 234 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~ 234 (326)
++.+|++|+.|+.|++||+++++.+..+.. ..|...|++++++|++.+|++|+.||+|++||+++++++..+. +..+
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 259 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIEN-SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP 259 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEEC-CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEcc-CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc
Confidence 899999999999999999999887765532 1278899999999999999999999999999999999988874 3457
Q ss_pred eEEEEeCCC----CCeeEEecCCCcceeEeecccCceeeeEeecccceee------------eccccc--cCcceeEEEE
Q 020461 235 VNAVTMSPL----LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE------------IGGVKG--HFGPINALAF 296 (326)
Q Consensus 235 ~~~~~~s~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------~~~~~~--h~~~v~~v~~ 296 (326)
+.+++++|. +.. +++++.|+ .+..+|.+.+.....+........ -..+.+ |...|++++|
T Consensus 260 v~~~~~~~~~s~~~~~-l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 260 ITHVEVCQFYGKNSVI-VVGGSSKT-FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEECTTTCTTEEE-EEEESTTE-EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred eEEEEeccccCCCccE-EEEEcCCC-cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 889976654 333 44444443 455666665554333321100000 001233 8889999999
Q ss_pred CCCCceEEeecCCCcEEEeecCCCc
Q 020461 297 NPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 297 s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
+ ++++|++|+.||.|++|++....
T Consensus 338 ~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 338 S-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp E-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred C-CceEEEecCCCCeEEEEECCCcc
Confidence 9 78999999999999999987643
No 93
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-30 Score=240.73 Aligned_cols=233 Identities=19% Similarity=0.294 Sum_probs=186.8
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|...|.+++|+|++++|++|+.|++|+|||+.++..+..+.+|.+.|.+++|+|++++|++++.|++|++||...
T Consensus 424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~ 503 (694)
T 3dm0_A 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG 503 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CcEEEEEe----cCCCcceeeeecCC---eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 84 GAQLFTFN----FDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 84 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
........ +...+.++.++++. .++..+.+ ..+.+|++. .+.....+.+|.+.|.+++|+|
T Consensus 504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~------~~~~~~~~~~h~~~v~~v~~sp 571 (694)
T 3dm0_A 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLS------NCKLRSTLAGHTGYVSTVAVSP 571 (694)
T ss_dssp CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECC------CCcEEEEEcCCCCCEEEEEEeC
Confidence 43332221 23446677777654 23333333 344555543 2356778899999999999999
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec----
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---- 232 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---- 232 (326)
++++|++|+.|++|++||+++++.+..+. +...+.+++|+|++.++++++ |+.|++||+++++++..+...
T Consensus 572 dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 646 (694)
T 3dm0_A 572 DGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAE 646 (694)
T ss_dssp TSSEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccc
Confidence 99999999999999999999988765543 446799999999987776665 667999999999888766321
Q ss_pred ----------------cceEEEEeCCCCCeeEEecCC
Q 020461 233 ----------------RPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 233 ----------------~~~~~~~~s~~~~~~~~~~~~ 253 (326)
..+.+++|+|+++.+++++.+
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 647 AEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp --------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence 125789999999988776543
No 94
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=8.5e-30 Score=223.14 Aligned_cols=292 Identities=11% Similarity=0.062 Sum_probs=216.1
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee-----eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
..+.+++|+|++.++++++.|+.|++||..+++.+. .+.+|.+.|.+++|+++++++++++.|++|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 446689999988888999999999999999998877 566899999999999999999999999999999999988
Q ss_pred EEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 86 QLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
.+..+.. ...+..+.+.+++..+++.... ...+.++++. .+.....+.. ...+..++|+|+++.++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~------~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWI----SEDISVIDRK------TKLEIRKTDK-IGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETT----TTEEEEEETT------TTEEEEECCC-CSEEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecC----CCcEEEEECC------CCcEEEEecC-CCCceEEEEcCCCCEEEEE
Confidence 8777653 4456777888766544333211 1233334332 2334444444 3458999999999999888
Q ss_pred e--------CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecCCcceEEEEeeccce
Q 020461 165 G--------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPV 235 (326)
Q Consensus 165 ~--------~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 235 (326)
+ .|+.|++||+++++..... .|...+.+++++|+++.+ ++++.|+.|++||+++++.+..+.....+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 347 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP 347 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence 7 5889999999988765543 456678999999999754 66789999999999999998888877789
Q ss_pred EEEEeCCCCCeeEEecCCCcce--eEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC-CCcE
Q 020461 236 NAVTMSPLLDHVVLGGGQDASA--VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYV 312 (326)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg~i 312 (326)
.+++++|+++.++++....... ...... .....+++|+....+.+..+.. ...+.+++|+|||++|++++. |++|
T Consensus 348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g-~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKG-LVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp EEEEECTTSSEEEEEECCCCCTTTCTTSCC-SSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred CeEEEcCCCCEEEEEecCCCcccccccccc-ccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeE
Confidence 9999999998887765432100 000000 0001344555544444444444 357899999999999987765 9999
Q ss_pred EEeecCC
Q 020461 313 RLHHFDP 319 (326)
Q Consensus 313 ~l~~~~~ 319 (326)
++|+++.
T Consensus 426 ~v~~~~~ 432 (433)
T 3bws_A 426 RVYRRDG 432 (433)
T ss_dssp EEEEETT
T ss_pred EEEEecC
Confidence 9999874
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.2e-31 Score=225.78 Aligned_cols=207 Identities=9% Similarity=0.008 Sum_probs=157.8
Q ss_pred ecCCceeEEEEccCCCEEEe--ecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 8 GHERPLTYLKYNKDGDLLFS--CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
.++..+.+++|||||++|++ ++.|++|+|||.++++++..+. |.+.|.+++|+||++++++++.+ .+++|+..+++
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 35566889999999998764 5578999999999999988875 77889999999999999999865 56777777776
Q ss_pred EEEEEe---cCCCcceeeeecCCeEEEEEcC-ccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 86 QLFTFN---FDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 86 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
...... +...+..+.|++++..++.+.. .... ..+..+..... .........+.+|...|++++|+|++++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~--~~i~~~~~~~~--~~~~~~~~~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG--IVLTKISIKSG--NTSVLRSKQVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC--EEEEEEEEETT--EEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce--eEEeecccccc--eecceeeeeecCCCCCeEeEEECCCCCce
Confidence 654432 2334667788887776655432 1100 01222222111 00112344567899999999999999999
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (326)
++|+.|++|+|||+++++.+..+ ..+|...|++++|+|||.+|||||.|++|++||+..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~--~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIF--KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEE--TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEcCCCEEEEEECCCCcEEEEe--cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999998877654 247999999999999999999999999999999853
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.5e-31 Score=220.49 Aligned_cols=202 Identities=23% Similarity=0.341 Sum_probs=153.8
Q ss_pred eeeeecCCceeEEEEcc--CCCEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEE
Q 020461 4 ILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~--~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~ 77 (326)
..+++|.++|.+++|+| ++++|++|+.|++|++||+.++ +.+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+
T Consensus 51 ~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~ 130 (316)
T 3bg1_A 51 ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130 (316)
T ss_dssp EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEE
T ss_pred EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEE
Confidence 45789999999999986 4899999999999999999887 456778899999999999997 78999999999999
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+||+.++....... .+.+|...+.++.|+|+
T Consensus 131 lwd~~~~~~~~~~~-------------------------------------------------~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 131 LLTYTGEGQWEVKK-------------------------------------------------INNAHTIGCNAVSWAPA 161 (316)
T ss_dssp EEEECSSSCEEECC-------------------------------------------------BTTSSSSCBCCCEECCC
T ss_pred EEecCCCCCcceee-------------------------------------------------eeccccCCcceEEEccc
Confidence 99987653211000 01123333444444443
Q ss_pred -----------------CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC----CeEEEEeCCCeEE
Q 020461 158 -----------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG----SHFLTGSLDKSAK 216 (326)
Q Consensus 158 -----------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~----~~l~s~s~dg~i~ 216 (326)
+++|++|+.|++|++||++............+|...|.+++|+|++ .+|++|+.|++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 4689999999999999997543222222345899999999999986 7899999999999
Q ss_pred EeecCCc---c-eEEEE-eeccceEEEEeCCCCCeeEEecCCC
Q 020461 217 LWDARTL---E-LIKTY-VTERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 217 iwd~~~~---~-~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
+||+++. + ....+ .+...+.+++|+|++..+++++.+.
T Consensus 242 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp EEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred EEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 9998762 1 11112 2456899999999998887765443
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-31 Score=233.40 Aligned_cols=213 Identities=17% Similarity=0.180 Sum_probs=162.8
Q ss_pred eeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461 46 GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (326)
Q Consensus 46 ~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
.....|...|++|+|+| ++++|++|+.||+|+|||+.+++..
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------- 155 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------- 155 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------------------
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------------------
Confidence 34457888999999999 5678999999999999998765321
Q ss_pred eeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC
Q 020461 125 KRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 203 (326)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 203 (326)
....+.+|.+.|++++|+| ++.+|++|+.|++|++||++++.. ..+.....+...+.++++++++
T Consensus 156 -------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 221 (435)
T 4e54_B 156 -------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASS 221 (435)
T ss_dssp -------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTT
T ss_pred -------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCC
Confidence 1122357889999999998 578999999999999999986543 2333333455668899999999
Q ss_pred CeEEEEeCCCeEEEeecCCcceEEEE-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461 204 SHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 282 (326)
Q Consensus 204 ~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (326)
.+|++|+.||.|++||++..+ +..+ .+...+.+++|+|+++.++++++.|+. +..||.+.... ...+.
T Consensus 222 ~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~~---------~~~~~ 290 (435)
T 4e54_B 222 RMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVRG---------KASFL 290 (435)
T ss_dssp TEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCCS---------SSCCS
T ss_pred CEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeeecCCCceEEEEecCcce-eeEEecccccc---------cceEE
Confidence 999999999999999997644 3443 356789999999999887777666543 22333322111 11122
Q ss_pred cccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 283 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 283 ~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
...+|...|++++|+|||.+|++|+.||+|+||++...
T Consensus 291 ~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 34679999999999999999999999999999998753
No 98
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.98 E-value=4.7e-30 Score=221.30 Aligned_cols=264 Identities=12% Similarity=0.102 Sum_probs=189.2
Q ss_pred ecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcEEEEEe---cCCCcceeeeec-CCeEEEEEc
Q 020461 38 FADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAV-GDKLAVITT 112 (326)
Q Consensus 38 ~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~ 112 (326)
+..+......+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+++....+. +...+.++.|++ +...++.+.
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 334556677888999999999999998 899999999999999999888777665 456778888988 444444332
Q ss_pred CccceeceeeeeeeeccCCCCCCCceEEEec---cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccC
Q 020461 113 DPFMELNSAIHVKRIARDPADQGGESVLILK---GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG 189 (326)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 189 (326)
. +..+.+|++. +.....+. ++...|.+++|+|++++|++|+.|+.|++||++ ++.+..+ .+
T Consensus 139 ~-----d~~i~iwd~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~---~~ 202 (383)
T 3ei3_B 139 I-----RGATTLRDFS-------GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKE---KL 202 (383)
T ss_dssp T-----TTEEEEEETT-------SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEE---EC
T ss_pred C-----CCEEEEEECC-------CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEe---cc
Confidence 2 2234455443 12333443 345889999999999999999999999999994 4444443 46
Q ss_pred cceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCC----cceEEEEeeccceEEEEeCC-CCCeeEEecCCCcceeEeecc
Q 020461 190 HKKTITSLAKAADGS-HFLTGSLDKSAKLWDART----LELIKTYVTERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDH 263 (326)
Q Consensus 190 h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~d~ 263 (326)
|...|.+++|+|++. +|++|+.|++|++||+++ +.++..+.+...+.+++|+| ++..+++++.+. .+..+|.
T Consensus 203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~--~i~iwd~ 280 (383)
T 3ei3_B 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRN--EIRVYSS 280 (383)
T ss_dssp SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSS--EEEEEET
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCC--cEEEEEC
Confidence 889999999999999 899999999999999998 67777777788999999999 888777665433 2334444
Q ss_pred cCceeeeEeecccc-----eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 264 RAGKFEAKFFDKIL-----QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 264 ~~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
+.+.....+..... ...+.......+.+..++|+||+++ +|+.||.|+||++....
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 33222111110000 0000000001245566888888888 89999999999987643
No 99
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=3.4e-30 Score=218.19 Aligned_cols=218 Identities=25% Similarity=0.372 Sum_probs=172.1
Q ss_pred CCCeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceec
Q 020461 41 NGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 119 (326)
Q Consensus 41 ~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (326)
+..+..+++||.+.|++|+|+|+ +++|+|||.|++|++||+.+++..
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~-------------------------------- 74 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN-------------------------------- 74 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--------------------------------
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--------------------------------
Confidence 33456689999999999999997 689999999999999998764321
Q ss_pred eeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (326)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~ 199 (326)
.+.+...+++|...|.++.|+|++++|++++.|+.|++|+.......... ..+...+....+
T Consensus 75 ---------------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~ 136 (340)
T 4aow_A 75 ---------------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF---VGHTKDVLSVAF 136 (340)
T ss_dssp ---------------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEE
T ss_pred ---------------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee---cCCCCceeEEEE
Confidence 01234456789999999999999999999999999999999876654433 345677888899
Q ss_pred cCCCCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCCe-eEEecCCCcceeEeecccCceeeeEeeccc
Q 020461 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKI 276 (326)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 276 (326)
++++.+|++|+.|+.+++||........... +...+..++++++... ++++++.|. .+++|+..
T Consensus 137 ~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~-------------~i~i~d~~ 203 (340)
T 4aow_A 137 SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-------------LVKVWNLA 203 (340)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTS-------------CEEEEETT
T ss_pred eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCC-------------EEEEEECC
Confidence 9999999999999999999998655433322 3457888999887654 334444443 23455555
Q ss_pred ceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 277 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 277 ~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
..+....+.+|.++|++++|+|++++|++|+.||+|++|+++...
T Consensus 204 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 555666678899999999999999999999999999999987653
No 100
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.98 E-value=5.2e-30 Score=221.84 Aligned_cols=231 Identities=15% Similarity=0.180 Sum_probs=188.3
Q ss_pred ceeeeecCCceeEEEEccC----C---CEEEeecCCCCeEEEecCCCCe-----eeeccCc-----ccceEEEEEc----
Q 020461 3 PILMKGHERPLTYLKYNKD----G---DLLFSCAKDHTPTVWFADNGER-----LGTYRGH-----NGAVWCCDVS---- 61 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~----~---~~l~s~~~d~~v~iw~~~~~~~-----~~~~~~h-----~~~V~~~~~~---- 61 (326)
...+.+|..+|.+++|+|+ + ++|++++.|+.|++|++.+++. +..+.+| ...|.+++|+
T Consensus 55 ~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 134 (397)
T ss_dssp EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred ceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC
Confidence 3567789999999999999 9 9999999999999999999887 8888888 5899999999
Q ss_pred CCCCe-EEEEeCCCcEEEEEccC------CcEEE-----EEe--------cCCCcceeeeecCCeEEEEEcCccceecee
Q 020461 62 RDSMT-LITGSADQTAKLWNVET------GAQLF-----TFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSA 121 (326)
Q Consensus 62 ~~~~~-l~s~~~d~~i~~wd~~~------~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
|++++ |++++.|+.|++||+.+ ++.+. .+. +...+.++.+.++. .++++.. +..
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-----dg~ 208 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN-----NGT 208 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT-----TSE
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC-----CCc
Confidence 99999 99999999999999988 55443 442 35667888888877 5544432 233
Q ss_pred eeeeeeccCCCCCCCceEEEecc---C---ccceeEEEEecCCcEEEEeeCC---CcEEEEECCCCccccccccc-----
Q 020461 122 IHVKRIARDPADQGGESVLILKG---P---QGRINRAVWGPLNRTIISAGED---AIVRIWDTETGKLLKESDKE----- 187 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~----- 187 (326)
+.++++. .+..+..+.. | ...|.+++|+|++.+|++++.| +.|++||+++++.+..+...
T Consensus 209 i~i~d~~------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 209 VQISELS------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp EEEEETT------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred EEEEECC------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence 4455442 2456677777 8 8999999999999999999999 99999999988776654310
Q ss_pred -----cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe------e----------------ccceEEEEe
Q 020461 188 -----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV------T----------------ERPVNAVTM 240 (326)
Q Consensus 188 -----~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~----------------~~~~~~~~~ 240 (326)
..|...|.+++|+|++.+|++++.||.|++||+++++++..+. . ...+.+++|
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 362 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 362 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEe
Confidence 0188999999999999999999999999999999999999887 2 578999999
Q ss_pred CCCCC
Q 020461 241 SPLLD 245 (326)
Q Consensus 241 s~~~~ 245 (326)
+|++.
T Consensus 363 ~~~g~ 367 (397)
T 1sq9_A 363 LKKGW 367 (397)
T ss_dssp ECTTT
T ss_pred ccccc
Confidence 99983
No 101
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=215.84 Aligned_cols=249 Identities=18% Similarity=0.258 Sum_probs=184.7
Q ss_pred eeccCcccceEEEEEcCCCCeE-EEEeC---CCcEEEEEccCCcEEEE--EecCCCcceeeeecC----CeEEEEEcCcc
Q 020461 46 GTYRGHNGAVWCCDVSRDSMTL-ITGSA---DQTAKLWNVETGAQLFT--FNFDSPARSVDFAVG----DKLAVITTDPF 115 (326)
Q Consensus 46 ~~~~~h~~~V~~~~~~~~~~~l-~s~~~---d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~ 115 (326)
..+++|...|.+++|+|+++.+ ++++. |++|++||+.+++.... ..+..++.++.|.+. ..++..+.+.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg- 90 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG- 90 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS-
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC-
Confidence 3457899999999999998655 55555 99999999999876543 356678888889886 3344443333
Q ss_pred ceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE------ecCCcEEEEeeCCCcEEEEECCCCc-ccccccccc
Q 020461 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW------GPLNRTIISAGEDAIVRIWDTETGK-LLKESDKET 188 (326)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~ 188 (326)
.+.+|++... ......+.+|...|.++.| +|+++.|++++.|+.|++||+++++ ....+....
T Consensus 91 -----~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 160 (357)
T 3i2n_A 91 -----NLHIWNLEAP-----EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160 (357)
T ss_dssp -----CEEEECTTSC-----SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred -----eEEEEeCCCC-----CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence 3444544321 1256678899999999954 6889999999999999999998876 444443322
Q ss_pred Cc-ceeeEEEE----EcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC---CCCeeEEecCCCcceeEe
Q 020461 189 GH-KKTITSLA----KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP---LLDHVVLGGGQDASAVTT 260 (326)
Q Consensus 189 ~h-~~~v~~v~----~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~~ 260 (326)
++ ...+.+++ +++++.+|++++.||.|++||++++++.....+...+.+++++| +++.+++++.+..
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~----- 235 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK----- 235 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-----
T ss_pred CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-----
Confidence 22 34788887 78999999999999999999999999877777788999999999 7777776543332
Q ss_pred ecccCceeeeEeecccceeeecc-----ccccCcceeEEEECCCCc-eEEeecCCCcEEEeecCC
Q 020461 261 TDHRAGKFEAKFFDKILQEEIGG-----VKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~ 319 (326)
+++|+....+.... +.+|...|++++|+|++. +|++|+.||.|++|+++.
T Consensus 236 ---------i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 236 ---------FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp ---------EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred ---------EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 23333332222222 348999999999999999 899999999999999874
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-30 Score=217.97 Aligned_cols=240 Identities=12% Similarity=0.053 Sum_probs=177.4
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecC---------CCCeeeecc-CcccceEEEEEcC--CCCeEEEEeCCCcEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAKL 78 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~---------~~~~~~~~~-~h~~~V~~~~~~~--~~~~l~s~~~d~~i~~ 78 (326)
..|.++.|+|+ +++++.|++|++|+.. +++.+..+. +|.++|.+++|+| +++++++++.|++|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 45667778887 9999999999999655 455444444 6778999999999 9999999999999999
Q ss_pred EEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 79 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
||+++++...... ..+...+.+++|+|++
T Consensus 154 wd~~~~~~~~~~~---------------------------------------------------~~~~~~i~~~~~~pdg 182 (343)
T 3lrv_A 154 QSYEDDSQYIVHS---------------------------------------------------AKSDVEYSSGVLHKDS 182 (343)
T ss_dssp EESSSSCEEEEEC---------------------------------------------------CCSSCCCCEEEECTTS
T ss_pred EECCCCcEEEEEe---------------------------------------------------cCCCCceEEEEECCCC
Confidence 9998876532110 1233458889999999
Q ss_pred cEEEEeeCCCcEEEEECCCCccc-cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee----cc
Q 020461 159 RTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT----ER 233 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~ 233 (326)
.+|++|+.|+.|++||+++++.. ..+. .+|...|++++|+|++.+|++++ |++|++||+++++++..+.. ..
T Consensus 183 ~~lasg~~dg~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~ 259 (343)
T 3lrv_A 183 LLLALYSPDGILDVYNLSSPDQASSRFP--VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF 259 (343)
T ss_dssp CEEEEECTTSCEEEEESSCTTSCCEECC--CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---
T ss_pred CEEEEEcCCCEEEEEECCCCCCCccEEe--ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccc
Confidence 99999999999999999988766 3332 24899999999999999999999 55999999999877654431 12
Q ss_pred ce--EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC---CCceEEeecC
Q 020461 234 PV--NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP---DGKSFSSGGE 308 (326)
Q Consensus 234 ~~--~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~---d~~~lat~s~ 308 (326)
.+ .+++|+|++..++++++.+.. +++|+........ . ..++..++|+| ++..+++++.
T Consensus 260 ~~~~~~~~~~~~g~~l~~~s~~d~~-------------i~v~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~l~~~~~ 322 (343)
T 3lrv_A 260 KTGTVTYDIDDSGKNMIAYSNESNS-------------LTIYKFDKKTKNW--T--KDEESALCLQSDTADFTDMDVVCG 322 (343)
T ss_dssp --CCEEEEECTTSSEEEEEETTTTE-------------EEEEEECTTTCSE--E--EEEEEECCC----CCCCEEEEEEE
T ss_pred cccceEEEECCCCCEEEEecCCCCc-------------EEEEEEcccccce--E--ecCceeEecCccccccceeEEEec
Confidence 23 369999999988886652321 2222211110000 0 04678899998 8999999999
Q ss_pred CCcEEEeecCCCceee
Q 020461 309 DGYVRLHHFDPDYFNI 324 (326)
Q Consensus 309 Dg~i~l~~~~~~~~~~ 324 (326)
||.++++-...+.+++
T Consensus 323 d~~~~~~~~~~~~~~i 338 (343)
T 3lrv_A 323 DGGIAAILKTNDSFNI 338 (343)
T ss_dssp TTEEEEEEECSSEEEE
T ss_pred CCceEEEEecCCeEeE
Confidence 9999998877776664
No 103
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.2e-31 Score=226.67 Aligned_cols=247 Identities=16% Similarity=0.142 Sum_probs=180.2
Q ss_pred cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC--cEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461 49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG--AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (326)
Q Consensus 49 ~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..|.++|.+++|+|++++|++++.|++|++||+.++ +....+. +..++.++.|++++..++.+.. +..+.+|
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----d~~v~vw 82 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ-----DRNAYVY 82 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET-----TSSEEEC
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC-----CCeEEEE
Confidence 446779999999999999999999999999999987 4444443 3566788888887654444332 1234444
Q ss_pred eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccC-cceeeEEEEEcCCCC
Q 020461 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG-HKKTITSLAKAADGS 204 (326)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~ 204 (326)
++.... .......+.+|...|.++.|+|+++.|++++.|+.|++||+++++.........+ |...|.+++|+|++.
T Consensus 83 d~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 83 EKRPDG---TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp ---------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EcCCCC---ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 443211 1234667788999999999999999999999999999999988764211222234 899999999999999
Q ss_pred eEEEEeCCCeEEEeecC------------------CcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCc
Q 020461 205 HFLTGSLDKSAKLWDAR------------------TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG 266 (326)
Q Consensus 205 ~l~s~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~ 266 (326)
+|++++.|++|++||++ .++++..+.+...+.+++|+|++..+++++.+.
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------ 227 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS------------ 227 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT------------
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC------------
Confidence 99999999999999985 345555555566799999999998777665433
Q ss_pred eeeeEeecccceee----eccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 267 KFEAKFFDKILQEE----IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 267 ~~~~~~~~~~~~~~----~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
.+++|+....+. +..+.+|..+|.+++|+|++++|++|+.|+.+ +|..+
T Consensus 228 --~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 228 --SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp --EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred --cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 233444433333 56678899999999999999999999877766 66655
No 104
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.4e-28 Score=212.48 Aligned_cols=269 Identities=13% Similarity=0.101 Sum_probs=205.5
Q ss_pred CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEEEEecCCCcceeee
Q 020461 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 101 (326)
Q Consensus 23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 101 (326)
.++++++.|+.|++||+.+++.+..+..|.. +.+++|+|+++++ ++++.|++|++||+.+++.+..+.....+..+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence 4688899999999999999999988887754 8999999999976 6777999999999999998888877777888889
Q ss_pred ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-EEeeCCCcEEEEECCCCcc
Q 020461 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKL 180 (326)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~ 180 (326)
++++..++++... ...+.++++. .++....+..+ ..+..++|+|+++.+ ++++.|+.|++||+.+++.
T Consensus 82 spdg~~l~~~~~~----~~~v~v~d~~------~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 82 SPDGKQVYVTNMA----SSTLSVIDTT------SNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (391)
T ss_dssp CTTSSEEEEEETT----TTEEEEEETT------TTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCEEEEEECC----CCEEEEEECC------CCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 8876654433211 1233444332 23444444443 468899999999977 6888899999999998877
Q ss_pred ccccccccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCC-Cccee
Q 020461 181 LKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ-DASAV 258 (326)
Q Consensus 181 ~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~ 258 (326)
...+. . ...+.+++++|++.++ ++++.|+.|++||+++++++..+.....+.+++++|+++.++++... ...
T Consensus 151 ~~~~~---~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-- 224 (391)
T 1l0q_A 151 INTVS---V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFN-- 224 (391)
T ss_dssp EEEEE---C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCC--
T ss_pred EEEEe---c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCC--
Confidence 65543 2 2456899999999887 67788999999999999988888777788999999999988877531 111
Q ss_pred EeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceE-EeecCCCcEEEeecCCC
Q 020461 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF-SSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l-at~s~Dg~i~l~~~~~~ 320 (326)
.+++|+....+.+..+..|. .+.+++|+|++++| ++++.|+.|++|+++..
T Consensus 225 ----------~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 225 ----------TVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp ----------EEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ----------cEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 23445544444444445454 57899999999877 78899999999998754
No 105
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=2.1e-29 Score=215.98 Aligned_cols=248 Identities=14% Similarity=0.144 Sum_probs=191.9
Q ss_pred ccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc--EEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461 48 YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA--QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (326)
Q Consensus 48 ~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
+..|.++|.+++|+|++++|++++.|+.|++||+.+++ ....+. +..++.++.+.+++..++.+.. +..+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----dg~i~v 78 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-----DRNAYV 78 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-----TSCEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC-----CCeEEE
Confidence 34589999999999999999999999999999999886 555554 4567888889887665554432 223444
Q ss_pred eeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccc-ccccCcceeeEEEEEcCCC
Q 020461 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES-DKETGHKKTITSLAKAADG 203 (326)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~h~~~v~~v~~s~~~ 203 (326)
|++... .......+..|...|.++.|+|++++|++++.|+.|++||++.++..... ....+|...|.+++|+|++
T Consensus 79 wd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 79 WTLKGR----TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp EEEETT----EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred EECCCC----eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 544221 11223445678899999999999999999999999999999876632111 1124688999999999999
Q ss_pred CeEEEEeCCCeEEEeecC------------------CcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461 204 SHFLTGSLDKSAKLWDAR------------------TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (326)
Q Consensus 204 ~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~ 264 (326)
.+|++++.||.|++||++ +++++..+. +...+.+++++|+++.+++++.+.
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------- 224 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS---------- 224 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT----------
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC----------
Confidence 999999999999999954 567777764 456799999999988777665332
Q ss_pred CceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 265 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
.+++|+....+.+..+..|..+|.+++|+|++.+|++| .|+.|++|+++.
T Consensus 225 ----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 225 ----TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ----EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ----EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 24455555555566677899999999999999999988 899999999987
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=219.93 Aligned_cols=255 Identities=14% Similarity=0.169 Sum_probs=179.8
Q ss_pred CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc-----------EEEEEec-C------------CCcceeeeecCC
Q 020461 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA-----------QLFTFNF-D------------SPARSVDFAVGD 105 (326)
Q Consensus 50 ~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----------~~~~~~~-~------------~~~~~~~~~~~~ 105 (326)
.|.+.|.+++|+|++++|++|+.||.|++||+.+++ ....+.. . .++.++.|.+..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999998776 2444443 3 668888998864
Q ss_pred ---eEEEEEcCccceeceeeeeeeec--cCCCCCCC-------------------------ceE-EEeccCccceeEEEE
Q 020461 106 ---KLAVITTDPFMELNSAIHVKRIA--RDPADQGG-------------------------ESV-LILKGPQGRINRAVW 154 (326)
Q Consensus 106 ---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------------------~~~-~~~~~~~~~i~~~~~ 154 (326)
.++.++.+..+.++......... .......+ ... ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 45555555444333221100000 00000000 011 224689999999999
Q ss_pred ecCCcEEEEeeCCCcEEEEECCC-Ccccccc----ccccCcceeeEEEEEcCCC-CeEEEEeCCCeEEEeecCCcce---
Q 020461 155 GPLNRTIISAGEDAIVRIWDTET-GKLLKES----DKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLEL--- 225 (326)
Q Consensus 155 ~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~----~~~~~h~~~v~~v~~s~~~-~~l~s~s~dg~i~iwd~~~~~~--- 225 (326)
+|++++|++| .|++|++||+++ ++....+ ....+|...|.+++|+|++ .+|++|+.||+|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 799999999984 3333211 1234788999999999998 9999999999999999999886
Q ss_pred -EEEEeecc-------------ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeeeccccccCcc
Q 020461 226 -IKTYVTER-------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGP 290 (326)
Q Consensus 226 -~~~~~~~~-------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~h~~~ 290 (326)
+..+.... .+.+++|+|++..+++++. .. +++|+... .+.+..+.+|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~------------v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY---LS------------VKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES---SE------------EEEEETTCCSSCSCCEESCGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC---Ce------------EEEEeCCCCccccceeeccccc
Confidence 56665432 7999999999888776543 22 33444433 3444555666432
Q ss_pred ---------------eeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 291 ---------------INALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 291 ---------------v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
+..++|+|++++|++|+.||.|+||++...
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 334999999999999999999999998764
No 107
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.6e-29 Score=215.97 Aligned_cols=258 Identities=14% Similarity=0.199 Sum_probs=190.1
Q ss_pred ccCcccceEEEEEcCC----CCeEEEEeCCCcEEEEEccCCcEEEEEe------cCCCcceeeeecC----CeEEEEEcC
Q 020461 48 YRGHNGAVWCCDVSRD----SMTLITGSADQTAKLWNVETGAQLFTFN------FDSPARSVDFAVG----DKLAVITTD 113 (326)
Q Consensus 48 ~~~h~~~V~~~~~~~~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~ 113 (326)
..+|.++|.+++|+|+ ...+++++.++.|++||+.+++.+..+. +...+.++.|.+. ..+++++..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 3589999999999984 4567777777899999999887665553 2355777888876 344444332
Q ss_pred ccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEeeCCCcEEEEECCCCccccccccccCcce
Q 020461 114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK 192 (326)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~ 192 (326)
+..+.++++. .++.+..+.+|...|.++.|+| ++.+|++++.|+.|++||+++++....+....+|..
T Consensus 94 -----dg~i~v~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 94 -----RGIIRIINPI------TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162 (366)
T ss_dssp -----TCEEEEECTT------TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS
T ss_pred -----CCEEEEEEch------hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC
Confidence 2244455432 3466778889999999999999 889999999999999999998887766544457899
Q ss_pred eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-----------------------------eccceEEEEeCCC
Q 020461 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-----------------------------TERPVNAVTMSPL 243 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------------------------~~~~~~~~~~s~~ 243 (326)
.|.+++|+|++.+|++++.||.|++||+++++....+. +...+.+++++
T Consensus 163 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 99999999999999999999999999999876554332 45678889988
Q ss_pred CCeeEEecCCCcceeEeecccCceeeeEeecc--cceeeeccccccCcceeEEEECCC--CceEEeecCCCcEEEeecCC
Q 020461 244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK--ILQEEIGGVKGHFGPINALAFNPD--GKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~v~~s~d--~~~lat~s~Dg~i~l~~~~~ 319 (326)
++.+++++. ++. +..+|.+........... .....+..+.+|...|++++|+|+ +++|++|+.||.|++|+++.
T Consensus 241 ~~~l~~~~~-d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 241 GDLILSKSC-ENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp TTEEEEECS-SSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred CCEEEEEec-CCE-EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 455555443 332 334443332211111100 111335566789999999999999 99999999999999999987
Q ss_pred C
Q 020461 320 D 320 (326)
Q Consensus 320 ~ 320 (326)
.
T Consensus 319 ~ 319 (366)
T 3k26_A 319 E 319 (366)
T ss_dssp S
T ss_pred C
Confidence 4
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=5e-29 Score=211.25 Aligned_cols=248 Identities=14% Similarity=0.152 Sum_probs=183.9
Q ss_pred eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc----EEEEEecCCCcceeeeecCCe-EEEEEcCccceecee
Q 020461 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA----QLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSA 121 (326)
Q Consensus 47 ~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 121 (326)
...+|.+.|.+++|+|++++|++++.|+.|++||+.+++ ......+..++.++.+.+++. .++++.. +..
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~ 80 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV-----QGE 80 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET-----TSC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC-----CCe
Confidence 346899999999999999999999999999999999887 555556677888899998766 4444332 223
Q ss_pred eeeeee-ccCCCCCCCceEEEecc--CccceeEEEEecCCcEEEEeeCCCcEEEEECCC---------CccccccccccC
Q 020461 122 IHVKRI-ARDPADQGGESVLILKG--PQGRINRAVWGPLNRTIISAGEDAIVRIWDTET---------GKLLKESDKETG 189 (326)
Q Consensus 122 ~~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~ 189 (326)
+.+|.+ .. .....+.+ |...|.++.|+| +..|++++.|+.|++||+++ ++.+..+ .
T Consensus 81 i~~wd~~~~-------~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~ 148 (342)
T 1yfq_A 81 ILKVDLIGS-------PSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----K 148 (342)
T ss_dssp EEEECSSSS-------SSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----S
T ss_pred EEEEEeccC-------CceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE----e
Confidence 444543 22 13366778 999999999999 99999999999999999987 6555443 3
Q ss_pred cceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC-cceEE---EEeeccceEEEEeCC-CCCeeEEecCCCcceeEeeccc
Q 020461 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIK---TYVTERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDHR 264 (326)
Q Consensus 190 h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~---~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~d~~ 264 (326)
|...+.++++++++ +++++.|+.|++||+++ +.... ...+...+.+++++| +++.+++++.++...+..++..
T Consensus 149 ~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 77899999999987 99999999999999998 54321 223456799999999 8887777655433222222211
Q ss_pred CceeeeEeecccceeeecccccc---------CcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 265 AGKFEAKFFDKILQEEIGGVKGH---------FGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~h---------~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
... ........+.+| ...|++++|+|++++|++|+.||.|++|+++...
T Consensus 227 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 227 GDD--------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CCS--------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred Ccc--------cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 000 000112223344 4599999999999999999999999999988643
No 109
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.9e-28 Score=213.97 Aligned_cols=235 Identities=17% Similarity=0.271 Sum_probs=181.6
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
+.+|...|++++|+|+|++|++|+.|++|+||++.+++++..+.+|...|.+++++ ++.|++|+.|+++++||.....
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc
Confidence 45678889999999999999999999999999999999999999999999998874 6799999999999999987754
Q ss_pred E-EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEE
Q 020461 86 Q-LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TII 162 (326)
Q Consensus 86 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 162 (326)
. +..+. +...+..+.+.+.+..++.... +..+.++...... .....+.....|.+.|.+++|+|.+. .++
T Consensus 221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-----D~~v~i~~~~~~~--~~~~~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGN-----DNLVNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEESSCCS--SCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred eeeEEecccccceeeeeecCCCCeeeeeec-----cccceEEeecccc--ccceeeeeecccCCceeeeeeCCCcccEEE
Confidence 3 33333 3445555666665554444322 1223333332211 11234556778899999999999765 554
Q ss_pred E--eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe--CCCeEEEeecCCcceEEEEe-eccceEE
Q 020461 163 S--AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPVNA 237 (326)
Q Consensus 163 s--~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (326)
+ |+.|++|++||+.+++....+. +...+.++.+++++..+++++ .|+.|++||+.+++++..+. +...|.+
T Consensus 294 ~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~ 369 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS 369 (420)
T ss_dssp EEECTTTCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEeecCCCEEEEEeCCccccceeec----cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 4 5679999999999988776543 345688999999999988765 79999999999999999886 5678999
Q ss_pred EEeCCCCCeeEEecCC
Q 020461 238 VTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~ 253 (326)
++|+|++..+++++.+
T Consensus 370 l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 370 LTMSPDGATVASAAAD 385 (420)
T ss_dssp EEECTTSSCEEEEETT
T ss_pred EEEcCCCCEEEEEecC
Confidence 9999999888776543
No 110
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=206.31 Aligned_cols=245 Identities=21% Similarity=0.302 Sum_probs=188.1
Q ss_pred CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceecee
Q 020461 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSA 121 (326)
Q Consensus 43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
+...++.+|.+.|.+++| +++++|++++.||.|++||+.+++....+. +...+.++.+.++...++++.. +..
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~ 82 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK-----DTM 82 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET-----TSC
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC-----CCe
Confidence 567789999999999999 899999999999999999998887766554 4677888889887665555432 123
Q ss_pred eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 201 (326)
+.++++... ........+.+|...|.++.| ++..+++++.|+.|++|| .++....+ ..|...+.++++.+
T Consensus 83 i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~---~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 83 INGVPLFAT---SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL---QAHNASVWDAKVVS 152 (313)
T ss_dssp EEEEETTCC---TTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE---ECCSSCEEEEEEEE
T ss_pred EEEEEeeec---CCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec---ccCCCceeEEEEcc
Confidence 334433221 223456677899999999999 467999999999999999 33333333 36888999999988
Q ss_pred -CCCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce
Q 020461 202 -DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 278 (326)
Q Consensus 202 -~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (326)
++.++++++.|+.|++||.. +....+. +...+.+++++|++. ++++ +.++ .+++|+....
T Consensus 153 ~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~~dg-------------~i~i~d~~~~ 215 (313)
T 3odt_A 153 FSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FISC-SNDG-------------LIKLVDMHTG 215 (313)
T ss_dssp TTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EEEE-ETTS-------------EEEEEETTTC
T ss_pred CCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EEEc-cCCC-------------eEEEEECCch
Confidence 89999999999999999944 4445544 566899999999887 4444 3332 2455555555
Q ss_pred eeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 279 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 279 ~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
+.+..+.+|.++|++++|+|++ .|++++.||.|++|+++...
T Consensus 216 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 216 DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence 5666678899999999999999 69999999999999987654
No 111
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-29 Score=213.31 Aligned_cols=218 Identities=20% Similarity=0.254 Sum_probs=166.1
Q ss_pred CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceecee
Q 020461 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121 (326)
Q Consensus 42 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
|+++..+.+|.+.|.+++|+|++++|++++.|++|++||+..+..
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------------------------------- 45 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH----------------------------------- 45 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----------------------------------
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-----------------------------------
Confidence 355677899999999999999999999999999999999863221
Q ss_pred eeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~ 199 (326)
.....+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++... .....+|...|.+++|
T Consensus 46 ---------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~ 109 (379)
T 3jrp_A 46 ---------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ-IAVHAVHSASVNSVQW 109 (379)
T ss_dssp ---------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEE
T ss_pred ---------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeE-eeeecCCCcceEEEEe
Confidence 122345678889999999977 8999999999999999998876221 1223468899999999
Q ss_pred cCC--CCeEEEEeCCCeEEEeecCCcceEEEE---eeccceEEEEeCC-------------CCCeeEEecCCCcceeEee
Q 020461 200 AAD--GSHFLTGSLDKSAKLWDARTLELIKTY---VTERPVNAVTMSP-------------LLDHVVLGGGQDASAVTTT 261 (326)
Q Consensus 200 s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~s~-------------~~~~~~~~~~~~~~~~~~~ 261 (326)
+|+ +.+|++++.|+.|++||+++....... .+...+.+++|+| ++..+++++.+.. +..+
T Consensus 110 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~i~ 187 (379)
T 3jrp_A 110 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL--VKIW 187 (379)
T ss_dssp CCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC--EEEE
T ss_pred CCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe--EEEE
Confidence 999 999999999999999999987433322 3456899999999 4666555543332 2233
Q ss_pred cccCceeeeEeecccceeeeccccccCcceeEEEECCC---CceEEeecCCCcEEEeecCCC
Q 020461 262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD---GKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 262 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d---~~~lat~s~Dg~i~l~~~~~~ 320 (326)
|.+.+. ........+.+|...|.+++|+|+ +.+|++++.||.|+||+++..
T Consensus 188 d~~~~~--------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 188 KYNSDA--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp EEETTT--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EecCCC--------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 322211 112233456789999999999999 899999999999999999874
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.7e-28 Score=209.62 Aligned_cols=238 Identities=15% Similarity=0.185 Sum_probs=179.0
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEE--cCCCCeEEEEeCCCcEEEEEc
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~--~~~~~~l~s~~~d~~i~~wd~ 81 (326)
..+.+|...|.+++|+|++++|++++.|+.|++|++.+++.+. +.+|...|.+++| ++++++|++++.|++|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 5688999999999999999999999999999999999888765 5679999999999 899999999999999999999
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe-ccCccceeEEEEecCCc-
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNR- 159 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~- 159 (326)
.+++.+..+........+.+... .+++...+.. +.++.+... ....... ..+...+.++.+.+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
T 3mmy_A 159 RSSNPMMVLQLPERCYCADVIYP-MAVVATAERG------LIVYQLENQ-----PSEFRRIESPLKHQHRCVAIFKDKQN 226 (368)
T ss_dssp SCSSCSEEEECSSCEEEEEEETT-EEEEEEGGGC------EEEEECSSS-----CEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred CCCcEEEEEecCCCceEEEecCC-eeEEEeCCCc------EEEEEeccc-----cchhhhccccccCCCceEEEcccCCC
Confidence 99988777776655555544433 3333333322 222322211 1111111 12233445555554443
Q ss_pred ---EEEEeeCCCcEEEEECCCCccccccccccCcce------------eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461 160 ---TIISAGEDAIVRIWDTETGKLLKESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 160 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~------------~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
.+++++.|+.|++||++............+|.. .|++++|+|++.+|++|+.||.|++||+++++
T Consensus 227 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence 399999999999999987643222222334554 79999999999999999999999999999999
Q ss_pred eEEEEee-ccceEEEEeCCCCCeeEEecCCC
Q 020461 225 LIKTYVT-ERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 225 ~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
++..+.. ...+.+++|+|++..++++++++
T Consensus 307 ~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 307 KLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp EEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred EEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 9888763 67899999999999988887654
No 113
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6e-28 Score=209.47 Aligned_cols=230 Identities=16% Similarity=0.259 Sum_probs=185.5
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC-CcE
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQ 86 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~ 86 (326)
.|...|.+++|+|++++|++|+.||.|++|++.+++.+..+.+|...|.+++| +++++++++.|+.|++||++. ...
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 37889999999999999999999999999999999999999999999999999 457999999999999999984 444
Q ss_pred EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEe
Q 020461 87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISA 164 (326)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~ 164 (326)
...+. +...+.++.+++++..++.+.. +..+.+|++. .+.....+.+|...|.+++|+|++. .++++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~v~iwd~~------~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGN-----DNVVQIWDAR------SSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------CSSEEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeC-----CCeEEEccCC------CCCccEEecCCcceEEEEEECCCCCCEEEEe
Confidence 44443 4567788888887665554432 2234445443 2456777888999999999999775 66665
Q ss_pred e--CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEE--EeCCCeEEEeecCCcceEEEEe---eccceEE
Q 020461 165 G--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLWDARTLELIKTYV---TERPVNA 237 (326)
Q Consensus 165 ~--~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~ 237 (326)
+ .|+.|++||+++++....+. +...+.+++|+|++.++++ |+.||.|++||+++++...... +...+.+
T Consensus 279 ~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~ 354 (401)
T 4aez_A 279 GGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY 354 (401)
T ss_dssp CCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCE
T ss_pred cCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEE
Confidence 5 79999999999888776553 5678999999999999999 4489999999999876655532 4567999
Q ss_pred EEeCCCCCeeEEecCCC
Q 020461 238 VTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~ 254 (326)
++|+|++..+++++.++
T Consensus 355 ~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 355 SALSPDGRILSTAASDE 371 (401)
T ss_dssp EEECTTSSEEEEECTTS
T ss_pred EEECCCCCEEEEEeCCC
Confidence 99999998887765543
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.2e-28 Score=208.75 Aligned_cols=216 Identities=16% Similarity=0.247 Sum_probs=164.7
Q ss_pred eeeeecCCceeEEEEcc--CCCEEEeecCCCCeEEEecCCC---------CeeeeccCcccceEEEEEcCC--CCeEEEE
Q 020461 4 ILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG---------ERLGTYRGHNGAVWCCDVSRD--SMTLITG 70 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~--~~~~l~s~~~d~~v~iw~~~~~---------~~~~~~~~h~~~V~~~~~~~~--~~~l~s~ 70 (326)
..+.+|...|.+++|+| ++++|++++.|++|++|++.++ +.+..+.+|.+.|.+++|+|+ +++|+++
T Consensus 51 ~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 130 (351)
T 3f3f_A 51 DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 130 (351)
T ss_dssp EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe
Confidence 34678999999999999 6999999999999999999887 457788899999999999999 9999999
Q ss_pred eCCCcEEEEEccCCcEEEEEe--------------cCCCcceeeeecC---CeEEEEE-cCccceeceeeeeeeeccCCC
Q 020461 71 SADQTAKLWNVETGAQLFTFN--------------FDSPARSVDFAVG---DKLAVIT-TDPFMELNSAIHVKRIARDPA 132 (326)
Q Consensus 71 ~~d~~i~~wd~~~~~~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 132 (326)
+.|++|++||+.+++.+..+. ....+.++.+.+. ...++++ .+.. +..+.. .
T Consensus 131 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------~~~~~~----~ 200 (351)
T 3f3f_A 131 GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA------IIYQRG----K 200 (351)
T ss_dssp ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE------EEEEEC----T
T ss_pred cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc------EEEEcc----C
Confidence 999999999998876432221 1234455666653 3333333 2221 111111 1
Q ss_pred CCCCceEEEeccCccceeEEEEecCC----cEEEEeeCCCcEEEEECCCCccc---------------------------
Q 020461 133 DQGGESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGKLL--------------------------- 181 (326)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~s~~~d~~i~~wd~~~~~~~--------------------------- 181 (326)
.........+.+|...|.+++|+|++ .+|++|+.|+.|++||++++...
T Consensus 201 ~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 201 DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp TSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred CCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence 11123466778899999999999998 89999999999999999764211
Q ss_pred ----------------cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461 182 ----------------KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 182 ----------------~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
..+....+|...|++++|+|++.+|++|+.||.|++||+.+++....+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 111223468899999999999999999999999999999987765554
No 115
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-27 Score=202.60 Aligned_cols=236 Identities=14% Similarity=0.172 Sum_probs=192.1
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC-----CcEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKL 78 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~ 78 (326)
..+.+|...|.+++|+|++++|++++.|+.|++|++.+++.+..+. |...|.+++|+|+++++++++.+ +.|++
T Consensus 68 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~ 146 (369)
T 3zwl_B 68 GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146 (369)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence 4677899999999999999999999999999999999999988887 88899999999999999999999 99999
Q ss_pred EEccCCcEEE-----------EE-ecCC--CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 79 WNVETGAQLF-----------TF-NFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 79 wd~~~~~~~~-----------~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
||+..+.... .+ .+.. .+.++.+.++...++++.. +..+.++++.. .......+..
T Consensus 147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~-----~~~~~~~~~~ 216 (369)
T 3zwl_B 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----DGKISKYDVSN-----NYEYVDSIDL 216 (369)
T ss_dssp EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----TSEEEEEETTT-----TTEEEEEEEC
T ss_pred EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----CCEEEEEECCC-----CcEeEEEEec
Confidence 9997654211 11 1112 5566677776655544332 22344444321 1456777888
Q ss_pred CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC-----------
Q 020461 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK----------- 213 (326)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg----------- 213 (326)
|...|.+++|+|++.+|++++.|+.|++||+++++....+. +...+.+++++|++.++++++.++
T Consensus 217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 292 (369)
T 3zwl_B 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE 292 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC-----------
T ss_pred CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCC
Confidence 99999999999999999999999999999999888766553 567899999999999999999998
Q ss_pred ---eEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCC
Q 020461 214 ---SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 214 ---~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
.+++||.++++.+..+. +...+.+++|+|+++.+++++.++
T Consensus 293 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 293 GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp --CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 89999999999988876 457899999999998777765443
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=7.4e-27 Score=201.74 Aligned_cols=242 Identities=10% Similarity=0.075 Sum_probs=186.0
Q ss_pred eeecCCceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEE-EeCCCcEEEEEccC
Q 020461 6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-GSADQTAKLWNVET 83 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s-~~~d~~i~~wd~~~ 83 (326)
+.+| ..+.+++|+|++++| ++++.|+.|++||..+++.+..+..+. .+.+++|+|++++++. ++.|++|++||+.+
T Consensus 28 ~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~ 105 (391)
T 1l0q_A 28 IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS 105 (391)
T ss_dssp EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC
Confidence 4444 458999999999976 678899999999999999988887665 8999999999998754 45679999999999
Q ss_pred CcEEEEEecCCCcceeeeecCCeEE-EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI- 161 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l- 161 (326)
++.+..+........+.+++++..+ +.... ...+.++++. .++....+..+ ..+..+.|+|+++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~------~~~~~~~~~~~-~~~~~~~~~~dg~~l~ 173 (391)
T 1l0q_A 106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNG-----DKTVSVINTV------TKAVINTVSVG-RSPKGIAVTPDGTKVY 173 (391)
T ss_dssp TEEEEEEECSSSEEEEEECTTSSEEEEEETT-----TTEEEEEETT------TTEEEEEEECC-SSEEEEEECTTSSEEE
T ss_pred CeEEEEEeCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEECC------CCcEEEEEecC-CCcceEEECCCCCEEE
Confidence 9888777776677778888776644 33322 1233444332 23445555544 456899999999877
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe---CCCeEEEeecCCcceEEEEeeccceEEE
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKTYVTERPVNAV 238 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 238 (326)
++++.++.|++||+++++....+. +...+.+++++|++.++++++ .++.|++||+++++.+..+.....+.++
T Consensus 174 ~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 249 (391)
T 1l0q_A 174 VANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI 249 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEE
Confidence 677889999999999887655442 456789999999999999888 6899999999999988888777778899
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCc
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAG 266 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~ 266 (326)
+++|+++.++++++.++ .+..+|...+
T Consensus 250 ~~s~dg~~l~~s~~~d~-~v~v~d~~~~ 276 (391)
T 1l0q_A 250 AVTPDGKKVYVALSFXN-TVSVIDTATN 276 (391)
T ss_dssp EECTTSSEEEEEETTTT-EEEEEETTTT
T ss_pred EEccCCCEEEEEcCCCC-EEEEEECCCC
Confidence 99999998877655443 3444554443
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=229.65 Aligned_cols=202 Identities=20% Similarity=0.328 Sum_probs=164.4
Q ss_pred eeeeecCCceeEEEEccC--CCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEE
Q 020461 4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK 77 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~--~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~ 77 (326)
..+.+|..+|.+++|+|+ +++|++|+.||+|++|++.++. .+..+.+|...|.+++|+|+ ++.+++|+.||+|+
T Consensus 47 ~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 126 (753)
T 3jro_A 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126 (753)
T ss_dssp EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence 467889999999999988 9999999999999999999886 67788899999999999999 99999999999999
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP- 156 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 156 (326)
+||+.++... ....+.+|...|.++.|+|
T Consensus 127 vwdl~~~~~~--------------------------------------------------~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 127 VVEFKENGTT--------------------------------------------------SPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEECCSSSCC--------------------------------------------------CCEEEECCSSCEEEEEECCC
T ss_pred EEEeecCCCc--------------------------------------------------ceeEeecCCCceEEEEecCc
Confidence 9999765321 0112345667788888888
Q ss_pred ------------CCcEEEEeeCCCcEEEEECCCCcccc-ccccccCcceeeEEEEEcCC---CCeEEEEeCCCeEEEeec
Q 020461 157 ------------LNRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 157 ------------~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~---~~~l~s~s~dg~i~iwd~ 220 (326)
++..+++|+.||+|++||++++.... ......+|...|++++|+|+ +.+|++|+.||.|++||+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 58899999999999999998764321 12233578999999999999 899999999999999999
Q ss_pred CCcceE-----E-EEeeccceEEEEeCCCCCeeEEecCCCc
Q 020461 221 RTLELI-----K-TYVTERPVNAVTMSPLLDHVVLGGGQDA 255 (326)
Q Consensus 221 ~~~~~~-----~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 255 (326)
++++.. . ...+...+.+++|+|++..+++++.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 986321 1 1124567889999999988877765443
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=6.4e-29 Score=214.98 Aligned_cols=216 Identities=9% Similarity=0.037 Sum_probs=148.5
Q ss_pred eeeecCCceeEEEEcc--------CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC-eEEEEeCCCc
Q 020461 5 LMKGHERPLTYLKYNK--------DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQT 75 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~--------~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~ 75 (326)
.+.||.+.|.+++|+| |+++|||||.|++|+|||+.++..+..+.+|..+|.+++|+|++. +|++++.|++
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~ 210 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN 210 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence 3679999999999998 899999999999999999999888888889999999999999874 7999999999
Q ss_pred EEEEEccCCcEEEEEecCCC-cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461 76 AKLWNVETGAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (326)
Q Consensus 76 i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (326)
|++||+.+++.......... .....+. ... ..........+|...+.++.|
T Consensus 211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s-------~~~---------------------~~~~~~~~~~~~~~~v~~v~~ 262 (393)
T 4gq1_A 211 IRIFDWTLNLSAEENSQTELVKNPWLLT-------LNT---------------------LPLVNTCHSSGIASSLANVRW 262 (393)
T ss_dssp EEEEETTCCC----------CSCCCSEE-------EES---------------------GGGC------CCSSSCSEEEE
T ss_pred EEEEECCCCcccccccccCCcccceEEe-------ccc---------------------ccceeeeecccccccceeeee
Confidence 99999998776443221100 0000000 000 000112234578888999998
Q ss_pred e-cCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEE------------------EEEcC--CCCeEEEEeCCC
Q 020461 155 G-PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS------------------LAKAA--DGSHFLTGSLDK 213 (326)
Q Consensus 155 ~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~------------------v~~s~--~~~~l~s~s~dg 213 (326)
+ |+++.+++++.|+++++||+.+++....+. .|...+.. ..+++ ++.++++|+.||
T Consensus 263 ~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg 339 (393)
T 4gq1_A 263 IGSDGSGILAMCKSGAWLRWNLFANNDYNEIS---DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG 339 (393)
T ss_dssp ETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT
T ss_pred ecCCCCEEEEEeCCCCEEEEECccCCCCceEe---eecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC
Confidence 7 789999999999999999998766543322 22222222 22222 444677889999
Q ss_pred eEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEec
Q 020461 214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 214 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~ 251 (326)
+|++||+.+++++.... +..+|.+++|+|+++.++++.
T Consensus 340 ~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 340 LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 99999999988876654 567899999999999988764
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-26 Score=204.75 Aligned_cols=232 Identities=14% Similarity=0.096 Sum_probs=181.7
Q ss_pred eecCCceeEEEEccCCCEE-EeecCCCCeEEEecC--CCCeeeecc--CcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 7 KGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFAD--NGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~--~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
.+|...|.+++|+|++++| ++++.|++|++|++. +++.+..+. .|...|.+++|+|++++|++++.|+.|++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 4677789999999999996 899999999999999 888888886 56788999999999999999999999999999
Q ss_pred cCCcEEE----EE-ecCCCcceeeeecC---CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEE
Q 020461 82 ETGAQLF----TF-NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRA 152 (326)
Q Consensus 82 ~~~~~~~----~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 152 (326)
.+++... .+ .+...+.++.|+++ ...++.+.. +..+.+|++.. +..+.. +.+|.+.|.++
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-----d~~i~vwd~~~------~~~~~~~~~~h~~~v~~~ 247 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-----DEHIKISHYPQ------CFIVDKWLFGHKHFVSSI 247 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-----TSCEEEEEESC------TTCEEEECCCCSSCEEEE
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-----CCcEEEEECCC------CceeeeeecCCCCceEEE
Confidence 8765432 22 34567788889987 666555432 23455565532 234444 66899999999
Q ss_pred EEecCCcEEEEeeCCCcEEEEECCCCccccccccc----------------------cCcceeeEEEEEcCCCCeEEEEe
Q 020461 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----------------------TGHKKTITSLAKAADGSHFLTGS 210 (326)
Q Consensus 153 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----------------------~~h~~~v~~v~~s~~~~~l~s~s 210 (326)
+|+ ++++|++++.|++|++||+++++.+..+... ......+.+++++|++.+|++++
T Consensus 248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp EEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 999 9999999999999999999998876554311 02345689999999999999999
Q ss_pred -CCCeEEEeec--CCc---ceEEEEeeccceEEEEeCCCCCeeEEec
Q 020461 211 -LDKSAKLWDA--RTL---ELIKTYVTERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 211 -~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 251 (326)
.|+.|++||+ .++ +.+..+.....+.+++|+|. ..+++.+
T Consensus 327 ~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~-~~~v~~~ 372 (450)
T 2vdu_B 327 EATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND-EFQVTLD 372 (450)
T ss_dssp TTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT-EEEEEEC
T ss_pred CCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC-cEEEEEe
Confidence 8999999999 555 66666666678999999994 3444433
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2e-27 Score=208.02 Aligned_cols=220 Identities=19% Similarity=0.283 Sum_probs=168.4
Q ss_pred eeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461 46 GTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (326)
Q Consensus 46 ~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
.....|.+.|++++|+|+ +++|++++.||.|++||+.+.... +.
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~-------~~---------------------------- 166 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSK-------PE---------------------------- 166 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSS-------CC----------------------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccc-------cC----------------------------
Confidence 344679999999999997 678999999999999998753110 00
Q ss_pred eeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCcccc----ccccccCcceeeEEEEE
Q 020461 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLK----ESDKETGHKKTITSLAK 199 (326)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~h~~~v~~v~~ 199 (326)
..........+.+|...+.+++|+|++. .|++|+.||.|++||++++.... ......+|...|.+++|
T Consensus 167 -------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 239 (430)
T 2xyi_A 167 -------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239 (430)
T ss_dssp -------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEE
T ss_pred -------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEE
Confidence 0011234455678899999999999988 99999999999999998743211 12233478899999999
Q ss_pred cC-CCCeEEEEeCCCeEEEeecCCc---ceEEEE-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeec
Q 020461 200 AA-DGSHFLTGSLDKSAKLWDARTL---ELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 274 (326)
Q Consensus 200 s~-~~~~l~s~s~dg~i~iwd~~~~---~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (326)
+| ++.+|++++.||.|++||++++ +.+..+ .+...+++++|+|++..++++++.++. +..+|.+..
T Consensus 240 ~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~-------- 310 (430)
T 2xyi_A 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNL-------- 310 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCT--------
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCC--------
Confidence 99 6788999999999999999987 455555 356789999999999876666655542 333443321
Q ss_pred ccceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEEEeecCC
Q 020461 275 KILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 275 ~~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~ 319 (326)
...+..+.+|.+.|.+++|+|+++ +|++++.||+|+||++..
T Consensus 311 ---~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 311 ---KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ---TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred ---CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 233455678999999999999996 699999999999999876
No 121
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1e-26 Score=203.95 Aligned_cols=225 Identities=24% Similarity=0.399 Sum_probs=177.4
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..+.+|...|.+++| ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|++ ..+++|+.|++|++||+.+
T Consensus 167 ~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSS
T ss_pred EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCC
Confidence 467789999999988 788999999999999999999999999999999999999974 5899999999999999988
Q ss_pred CcEEE---EE-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 84 GAQLF---TF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 84 ~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
++... .+ .+...+.++.+ .+..++.++.+. .+.++++. .+..+..+.+|...|.++.++ +.
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg------~i~vwd~~------~~~~~~~~~~~~~~v~~~~~~--~~ 307 (435)
T 1p22_A 243 PTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDR------TIKVWNTS------TCEFVRTLNGHKRGIACLQYR--DR 307 (435)
T ss_dssp SSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTS------EEEEEETT------TCCEEEEEECCSSCEEEEEEE--TT
T ss_pred CCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCC------eEEEEECC------cCcEEEEEcCCCCcEEEEEeC--CC
Confidence 76542 22 23445556666 444555444433 34444432 346777888999999999885 57
Q ss_pred EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc---------eEEEEe
Q 020461 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE---------LIKTYV 230 (326)
Q Consensus 160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~ 230 (326)
.+++|+.|+.|++||+++++.+..+ .+|...|.++++ ++.+|++|+.||.|++||+++++ ++..+.
T Consensus 308 ~l~~g~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 382 (435)
T 1p22_A 308 LVVSGSSDNTIRLWDIECGACLRVL---EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382 (435)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEE---eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc
Confidence 9999999999999999998877655 368899999998 78899999999999999998776 666664
Q ss_pred -eccceEEEEeCCCCCeeEEecCCCc
Q 020461 231 -TERPVNAVTMSPLLDHVVLGGGQDA 255 (326)
Q Consensus 231 -~~~~~~~~~~s~~~~~~~~~~~~~~ 255 (326)
+...+.++++ ++..+++ ++.|+
T Consensus 383 ~h~~~v~~l~~--~~~~l~s-~s~Dg 405 (435)
T 1p22_A 383 EHSGRVFRLQF--DEFQIVS-SSHDD 405 (435)
T ss_dssp CCSSCCCCEEE--CSSCEEE-CCSSS
T ss_pred CCCCCeEEEEe--CCCEEEE-EeCCC
Confidence 4567888888 4455544 44443
No 122
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=8.3e-27 Score=202.09 Aligned_cols=287 Identities=14% Similarity=0.205 Sum_probs=181.0
Q ss_pred ecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC---CCeEEEEeCCCcEEEEEccC
Q 020461 8 GHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 8 ~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~d~~i~~wd~~~ 83 (326)
+|...|.+++|+| ++++|++++.|+.|++|++.+++.+..+. +...+.++.+++. +.++++++.|+.|++||+.+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 5999999999999 77899999999999999999998887775 6788999999884 44999999999999999999
Q ss_pred CcEEEEEe-cCCCcceeeeecCCe--EEEEEcCccceeceeeeeeeeccCCC----------CCCCceEEEeccCcccee
Q 020461 84 GAQLFTFN-FDSPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDPA----------DQGGESVLILKGPQGRIN 150 (326)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~ 150 (326)
++.+..+. +..++.++.+.++.. ++..+.+.. +.++++..... ...........+|...|.
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSR------VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSC------EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc------EEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 88777765 456778888887665 333333332 33333321100 000011112257888999
Q ss_pred EEEEecCCcEEEEeeCCCcEEEEECCCCccccccccc--cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (326)
Q Consensus 151 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (326)
+++|+|++++|++++.|+.|++||+++++........ ......+........+..+++++.|+.|++||+.+++++..
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM 329 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee
Confidence 9999999999999999999999999987764432211 01111222222334456788888999999999999999988
Q ss_pred Ee-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC-CCceEEee
Q 020461 229 YV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSG 306 (326)
Q Consensus 229 ~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~lat~ 306 (326)
+. +...+.+++|+|++..+++++.+.. +++|+....+.+.....+ -....++| +...+.++
T Consensus 330 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~--------------i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 392 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQELYSGSRDCN--------------ILAWVPSLYEPVPDDDET---TTKSQLNPAFEDAWSSS 392 (408)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSC--------------EEEEEECC------------------------------
T ss_pred eccCCCeEEEEEEcCCCCEEEEECCCCe--------------EEEEeCCCCCccCCCCce---Eeccccccccceeeccc
Confidence 86 5578999999999988776654332 344444443333222211 22233443 44557788
Q ss_pred cCCCcEEEeecC
Q 020461 307 GEDGYVRLHHFD 318 (326)
Q Consensus 307 s~Dg~i~l~~~~ 318 (326)
+.|+.+++|+.+
T Consensus 393 ~~~~~~~~W~~~ 404 (408)
T 4a11_B 393 DEEGGTSAWSHP 404 (408)
T ss_dssp ------------
T ss_pred CccCceeecCCc
Confidence 889999999875
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3e-26 Score=195.51 Aligned_cols=248 Identities=10% Similarity=0.072 Sum_probs=161.8
Q ss_pred EEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCcc
Q 020461 36 VWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115 (326)
Q Consensus 36 iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (326)
||...+...+....+|.+.|.+++|+||+++|++|+.|+ +++||+++++......+. .+..+.+.+.....++.+..
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGV- 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSS-
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECC-
Confidence 566667777777889999999999999999999888775 789999887766554443 34555555544444332221
Q ss_pred ceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCC-ccccccccccCcceee
Q 020461 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTI 194 (326)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~h~~~v 194 (326)
...+.+|+.. .++.+..+. +...|.++.++++. ++.+ .|+.|++||+.++ +.+..+.. ..
T Consensus 80 ---d~~v~iWd~~------~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~------~~ 140 (355)
T 3vu4_A 80 ---KEVVHIWDDV------KKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR------FG 140 (355)
T ss_dssp ---TTEEEEEETT------TTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE------EE
T ss_pred ---ccEEEEEECC------CCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc------CC
Confidence 1244555542 234555554 56689999998864 3333 4789999999887 55554421 33
Q ss_pred EEEEEcCCCCeEEE--EeCCCeEEEeecCCcc----------------eEEEEe-eccceEEEEeCCCCCeeEEecCCCc
Q 020461 195 TSLAKAADGSHFLT--GSLDKSAKLWDARTLE----------------LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDA 255 (326)
Q Consensus 195 ~~v~~s~~~~~l~s--~s~dg~i~iwd~~~~~----------------~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~ 255 (326)
..+++++ .+++. |+.||.|++||+++++ ++..+. +...+.+++|+|++..+++++. |+
T Consensus 141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-d~ 217 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-DG 217 (355)
T ss_dssp EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET-TC
T ss_pred ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-CC
Confidence 3445566 45665 6899999999999865 134443 5678999999999887776543 33
Q ss_pred ceeEeecccCceeeeEeecccceeeecccc-c-cCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 256 SAVTTTDHRAGKFEAKFFDKILQEEIGGVK-G-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
.. +++|+...++.+..+. + |.+.|++++|+||+++||+|+.|++|+||+++..
T Consensus 218 ~~------------v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 218 TI------------IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SE------------EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred CE------------EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 21 3456555555556666 5 9999999999999999999999999999999765
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=6e-27 Score=193.09 Aligned_cols=198 Identities=16% Similarity=0.145 Sum_probs=138.1
Q ss_pred ceeEEEEccC----CCEEEeecC--------------------CCCeEEEec-CCCCeeeeccCcccceEEEEEcC---C
Q 020461 12 PLTYLKYNKD----GDLLFSCAK--------------------DHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSR---D 63 (326)
Q Consensus 12 ~i~~~~~s~~----~~~l~s~~~--------------------d~~v~iw~~-~~~~~~~~~~~h~~~V~~~~~~~---~ 63 (326)
.|..++|+|| ++++++++. |+.|++|++ .+|+.+..+.+|...+..++|++ +
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM 192 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence 5678888888 777777553 888888888 45777777778888888888888 6
Q ss_pred CCeEEEEeCCCcEEEEEccCCcEEEEEecC-C---CcceeeeecCCeEEEEEcCcc-------ceeceeeeeeeeccCCC
Q 020461 64 SMTLITGSADQTAKLWNVETGAQLFTFNFD-S---PARSVDFAVGDKLAVITTDPF-------MELNSAIHVKRIARDPA 132 (326)
Q Consensus 64 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 132 (326)
++.|++++.|++||+||+++++.+..+..+ . .+..+.|+++...++....+. ...+..+.++..
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~----- 267 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP----- 267 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET-----
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC-----
Confidence 688999999999999999999998888632 1 233446888877765543211 111223333332
Q ss_pred CCCCceEEEe-----ccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeE-EEEEcCCCCeE
Q 020461 133 DQGGESVLIL-----KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHF 206 (326)
Q Consensus 133 ~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~~~l 206 (326)
.++..+..+ .+|.....+..+ .+..+++++.|++|+|||+.+++++.++. +|...+. +++|+|||++|
T Consensus 268 -~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 268 -KTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp -TTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECSSSSEE
T ss_pred -CCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECCCCCEE
Confidence 123333332 355554433333 36789999999999999999999887663 6766554 58999999999
Q ss_pred EEEeCCCeEEEeec
Q 020461 207 LTGSLDKSAKLWDA 220 (326)
Q Consensus 207 ~s~s~dg~i~iwd~ 220 (326)
++|+.|++||+||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999995
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=5.7e-25 Score=192.45 Aligned_cols=282 Identities=12% Similarity=0.104 Sum_probs=200.2
Q ss_pred cCCceeEEE---EccCCCEEEe--------------ecCCCCeEEEecC--CC--CeeeeccCcccceEEEEEcCCCCeE
Q 020461 9 HERPLTYLK---YNKDGDLLFS--------------CAKDHTPTVWFAD--NG--ERLGTYRGHNGAVWCCDVSRDSMTL 67 (326)
Q Consensus 9 h~~~i~~~~---~s~~~~~l~s--------------~~~d~~v~iw~~~--~~--~~~~~~~~h~~~V~~~~~~~~~~~l 67 (326)
....+..++ |+|+++.++. ++.++.++||.+. ++ +.+..+..+. .+.+++|+|+++++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence 344567777 8888776553 3344444555543 34 4455555543 45689999977788
Q ss_pred EEEeCCCcEEEEEccCCcEEEEEe------cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE
Q 020461 68 ITGSADQTAKLWNVETGAQLFTFN------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (326)
Q Consensus 68 ~s~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (326)
++++.|++|++||+.+++...... +...+.++.+.+++.+++.... ...+.++++. .+.....
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-----d~~v~~~d~~------~~~~~~~ 206 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ-----ANAVHVFDLK------TLAYKAT 206 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG-----GTEEEEEETT------TCCEEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC-----CCEEEEEECC------CceEEEE
Confidence 888899999999999988775432 1234556677766666655432 2234444432 3456666
Q ss_pred eccCccceeEEEEecCCcEEE-EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe--------CC
Q 020461 142 LKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--------LD 212 (326)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s--------~d 212 (326)
+..|...+.+++|+|+++.++ +++.|+.|++||+++++....+. +...+.+++++|++.++++++ .|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 207 VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD----KIGLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC----CCSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec----CCCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 778888999999999998775 55589999999999887765443 234589999999999999988 58
Q ss_pred CeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCccee
Q 020461 213 KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 292 (326)
Q Consensus 213 g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 292 (326)
+.|++||+++++.+..+.....+..++++|+++.+++++..++. +++|+....+....+ .+...+.
T Consensus 283 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-------------v~v~d~~~~~~~~~~-~~~~~~~ 348 (433)
T 3bws_A 283 GRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-------------IEVYDLKEKKVQKSI-PVFDKPN 348 (433)
T ss_dssp EEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-------------EEEEETTTTEEEEEE-ECSSSEE
T ss_pred CeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-------------EEEEECCCCcEEEEe-cCCCCCC
Confidence 89999999999888887666688899999999887776554432 233433333333323 2557799
Q ss_pred EEEECCCCceEEeecC---------------CCcEEEeecCCC
Q 020461 293 ALAFNPDGKSFSSGGE---------------DGYVRLHHFDPD 320 (326)
Q Consensus 293 ~v~~s~d~~~lat~s~---------------Dg~i~l~~~~~~ 320 (326)
+++|+|+|++|++++. ||.|++|+....
T Consensus 349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 9999999998888776 579999998654
No 126
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=6.6e-25 Score=183.88 Aligned_cols=234 Identities=17% Similarity=0.250 Sum_probs=177.6
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
+.+|...|.+++|+|++++|++|+.|++|++|+.++++++..+.+|...+.++++ +++.+++++.++.+++|+.....
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~ 140 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE 140 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc
Confidence 4578888999999999999999999999999999999999999999999887665 56799999999999999988764
Q ss_pred EE-EEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE---
Q 020461 86 QL-FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT--- 160 (326)
Q Consensus 86 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--- 160 (326)
.. ..+. +......+.+.+.+..++.+.. +..+.+|++.... ...........+.+.|..+.++|.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (318)
T 4ggc_A 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGN-----DNLVNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213 (318)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEESSCBT--TBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred eeEEEEcCccCceEEEEEcCCCCEEEEEec-----CcceeEEECCCCc--ccccceeeecccCCceEEEEecCCCCcEEE
Confidence 43 2332 3445555566655544443322 2234444443211 111234455677888999999998753
Q ss_pred EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe--CCCeEEEeecCCcceEEEEe-eccceEE
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPVNA 237 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (326)
+++++.+++|++||.+........ .+...+..+.+++++..+++++ .|++|++||+++++++..+. +...|.+
T Consensus 214 ~~~~~~~~~i~lwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~ 289 (318)
T 4ggc_A 214 TGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS 289 (318)
T ss_dssp EEECTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEecCCCCEEEEEecccccccccc----cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 346788999999999877655432 3567789999999999888765 79999999999999999986 5678999
Q ss_pred EEeCCCCCeeEEecC
Q 020461 238 VTMSPLLDHVVLGGG 252 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~ 252 (326)
++|+|++..+++++.
T Consensus 290 l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 290 LTMSPDGATVASAAA 304 (318)
T ss_dssp EEECTTSSCEEEEET
T ss_pred EEEcCCCCEEEEEec
Confidence 999999988776543
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=4.4e-25 Score=192.10 Aligned_cols=245 Identities=11% Similarity=0.004 Sum_probs=179.1
Q ss_pred eeeecCCceeEEEEcc--------------CCCEEEeecCC------CCeEEEecCCCCeeeeccCcccceEEEEEcCCC
Q 020461 5 LMKGHERPLTYLKYNK--------------DGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~--------------~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~ 64 (326)
.+.+|...+..+++++ .+..++.++.+ +.|++||.. +.....+.+|...|.+++|+|++
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG 190 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTS
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC
Confidence 3667777776666664 25666666654 799999987 45567788899999999999999
Q ss_pred CeEEEEeCCC---cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE
Q 020461 65 MTLITGSADQ---TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (326)
Q Consensus 65 ~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (326)
++|++++.|+ .|++||+.+++...
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~~----------------------------------------------------- 217 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVRQ----------------------------------------------------- 217 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEE-----------------------------------------------------
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEEE-----------------------------------------------------
Confidence 9999999885 99999998765421
Q ss_pred eccCccceeEEEEecCCcEEE-EeeCCCc--EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CC--eE
Q 020461 142 LKGPQGRINRAVWGPLNRTII-SAGEDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SA 215 (326)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i 215 (326)
+..+...+.+++|+|+++.|+ +++.|+. |.+||+.+++.. . ...|...+.+++|+|||++|++++. ++ .|
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~---l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-Q---VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E---CCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-e---CcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 112334577889999999777 6666655 999999887653 2 2357778999999999999998886 44 67
Q ss_pred EEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461 216 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 295 (326)
Q Consensus 216 ~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 295 (326)
++||+.+++..........+..++|+|+++.++.+...++ ...+++|+...++. ..+..|. .+.+++
T Consensus 294 ~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-----------~~~i~~~d~~~~~~-~~l~~~~-~~~~~~ 360 (415)
T 2hqs_A 294 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-----------QQHIAKQDLATGGV-QVLSSTF-LDETPS 360 (415)
T ss_dssp EEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-----------CEEEEEEETTTCCE-EECCCSS-SCEEEE
T ss_pred EEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCC-----------ceEEEEEECCCCCE-EEecCCC-CcCCeE
Confidence 8889988775433234456788999999998877654322 12344555443332 2234443 789999
Q ss_pred ECCCCceEEeecCCC---cEEEeecCCC
Q 020461 296 FNPDGKSFSSGGEDG---YVRLHHFDPD 320 (326)
Q Consensus 296 ~s~d~~~lat~s~Dg---~i~l~~~~~~ 320 (326)
|+|||++|++++.|+ .|.+|+++..
T Consensus 361 ~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 361 LAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred EcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 999999999998877 6888877643
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=5.1e-24 Score=191.09 Aligned_cols=286 Identities=10% Similarity=0.068 Sum_probs=199.1
Q ss_pred EEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc--cCCcEEEEEecCC
Q 020461 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV--ETGAQLFTFNFDS 94 (326)
Q Consensus 17 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~~~~~ 94 (326)
.|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+||+++|++++.|++|++||+ .+++.+..+....
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence 3789999999999999999999999999999984333 889999999999999999999999999 7888777776655
Q ss_pred Ccceeeeec----CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc----------C-ccceeEEEEecCCc
Q 020461 95 PARSVDFAV----GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNR 159 (326)
Q Consensus 95 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~ 159 (326)
....+.+++ +++.++++.. ....+.+++. ..++.+..+.. | ...+..+.++|+++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~----~~~~v~v~D~------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAY----WPPQFAIMDG------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEE----ESSEEEEEET------TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred CcceEEeCCCcCCCCCEEEEEEc----cCCeEEEEec------cccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 567788887 6665554431 1122233322 12334443332 2 23788999999776
Q ss_pred -EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcceEEEEeec---cc
Q 020461 160 -TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVTE---RP 234 (326)
Q Consensus 160 -~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~---~~ 234 (326)
++++...++.|.+||..+.+.+.... ..+...+..+.|+|+|++|++++ .+++|.+||.++++++..+... .+
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~ 370 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTVTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 370 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEEEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred EEEEEECCCCeEEEEEecCCCcceeEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence 55678889999999998765543111 12445678899999999877655 5899999999999998887632 11
Q ss_pred eEEEE-eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec------
Q 020461 235 VNAVT-MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG------ 307 (326)
Q Consensus 235 ~~~~~-~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s------ 307 (326)
..... ++|++..+++++..+...+..+|....... ....+.++.+.+|.+.+..|+|+|||++|++++
T Consensus 371 g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~-----~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 371 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP-----QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT-----TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred CCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc-----hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 11222 467755666554322122333332210000 000344556777888889999999999999987
Q ss_pred -CCCcEEEeecCCC
Q 020461 308 -EDGYVRLHHFDPD 320 (326)
Q Consensus 308 -~Dg~i~l~~~~~~ 320 (326)
.+++|+||+....
T Consensus 446 ~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 446 RISQSVAVFDLKNL 459 (543)
T ss_dssp HHHTCEEEEETTCT
T ss_pred ccCceEEEEECCCC
Confidence 3789999998753
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.5e-23 Score=182.37 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=172.8
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCC---CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCc--E
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A 76 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~---~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~--i 76 (326)
+..+.+|...+.+++|||||++|++++.++ .|++||+.+++.. .+..|.+.+.+++|+||++.|+ +++.|+. |
T Consensus 171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 467788999999999999999999999885 9999999998875 5667888999999999999877 7776665 8
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
.+||+.+++.. .+..|...+..+.|+|
T Consensus 250 ~~~d~~~~~~~-----------------------------------------------------~l~~~~~~~~~~~~sp 276 (415)
T 2hqs_A 250 YVMDLASGQIR-----------------------------------------------------QVTDGRSNNTEPTWFP 276 (415)
T ss_dssp EEEETTTCCEE-----------------------------------------------------ECCCCSSCEEEEEECT
T ss_pred EEEECCCCCEE-----------------------------------------------------eCcCCCCcccceEECC
Confidence 88898765431 1123445677889999
Q ss_pred CCcEEEEeeC-CC--cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC---CeEEEeecCCcceEEEEe
Q 020461 157 LNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV 230 (326)
Q Consensus 157 ~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~ 230 (326)
+++.|++++. ++ .|.+||+.+++... + ..|...+.+++|+|+|++|++++.+ ..|++||+.+++.. .+.
T Consensus 277 dg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l---~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 277 DSQNLAFTSDQAGRPQVYKVNINGGAPQR-I---TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSCCEE-C---CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCEEEEEECCCCCcEEEEEECCCCCEEE-E---ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 9998888776 45 57777988775432 2 2355678899999999999988875 58999999988764 343
Q ss_pred eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc
Q 020461 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301 (326)
Q Consensus 231 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~ 301 (326)
....+..++|+|+++.++.++..++ ...++.|+.. +.....+.+|.+.|.+++|+|...
T Consensus 352 ~~~~~~~~~~spdg~~l~~~s~~~~-----------~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 352 STFLDETPSLAPNGTMVIYSSSQGM-----------GSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CSSSCEEEEECTTSSEEEEEEEETT-----------EEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCCcCCeEEcCCCCEEEEEEcCCC-----------ccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 3347889999999998877654332 1234455543 233445678999999999999653
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=5.6e-23 Score=184.33 Aligned_cols=293 Identities=11% Similarity=0.094 Sum_probs=197.7
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEec--CCCCeeeeccCcccceEEEEEcC----CCCeEEEEe-CCCcEEEEEccCCc
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFA--DNGERLGTYRGHNGAVWCCDVSR----DSMTLITGS-ADQTAKLWNVETGA 85 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~--~~~~~~~~~~~h~~~V~~~~~~~----~~~~l~s~~-~d~~i~~wd~~~~~ 85 (326)
+..++|+|||++|++++.|++|++||+ .+++.+.++.. ...+..++|+| |++++++++ .+++|.+||..+++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 789999999999999999999999999 88888888874 44578999999 999999988 48999999999998
Q ss_pred EEEEEecC------------CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461 86 QLFTFNFD------------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (326)
Q Consensus 86 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (326)
.+..+... ..+..+.++++....+++... ...+.+++.... ....+..+ .+...+..+.
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~----~g~i~vvd~~~~----~~l~~~~i-~~~~~~~~~~ 330 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE----TGKVLLVNYKDI----DNLTVTSI-GAAPFLHDGG 330 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEECTTS----SSCEEEEE-ECCSSCCCEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC----CCeEEEEEecCC----CcceeEEe-ccCcCccCce
Confidence 88776532 123344555543333322211 112222222111 01111222 2445677899
Q ss_pred EecCCcEEEEe-eCCCcEEEEECCCCcccccccc-ccCcceeeEEEEEcCC-CCeEEEEe-CCCeEEEeecCC-------
Q 020461 154 WGPLNRTIISA-GEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAAD-GSHFLTGS-LDKSAKLWDART------- 222 (326)
Q Consensus 154 ~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~-~~~l~s~s-~dg~i~iwd~~~------- 222 (326)
|+|++++++++ ..+++|.+||..++++...+.. ...|......+ ++|+ +..++++. .|++|.+||+.+
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~ 409 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA 409 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence 99999977655 5689999999999987765532 12354433333 4676 66677775 589999999998
Q ss_pred cceEEEEeec-cceEEEEeCCCCCeeEEec--CCC---cceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE
Q 020461 223 LELIKTYVTE-RPVNAVTMSPLLDHVVLGG--GQD---ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296 (326)
Q Consensus 223 ~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~--~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 296 (326)
.++++++... .....+.++|+++.++++. +.+ ...+..+|........+... .....++..+...+..++|
T Consensus 410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~ 486 (543)
T 1nir_A 410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP---IAEWADLGEGAKRVVQPEY 486 (543)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC---HHHHHCCCSSCCEEEEEEE
T ss_pred CeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEee---chhhcccCCCCCceEeccC
Confidence 8899988754 4567899999999998865 222 22444555443321101100 0001123456778999999
Q ss_pred CCCCceEEee-----cCCCcEEEeecCC
Q 020461 297 NPDGKSFSSG-----GEDGYVRLHHFDP 319 (326)
Q Consensus 297 s~d~~~lat~-----s~Dg~i~l~~~~~ 319 (326)
+|||+.+..+ +.|+.|.||+...
T Consensus 487 ~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 487 NKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp CSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 9999998765 3489999987654
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=6.7e-23 Score=172.89 Aligned_cols=292 Identities=11% Similarity=0.059 Sum_probs=188.3
Q ss_pred EEEccCCCE-EEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC-CCcEEEEEccCCcE-EEEEec
Q 020461 16 LKYNKDGDL-LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQ-LFTFNF 92 (326)
Q Consensus 16 ~~~s~~~~~-l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~-~~~~~~ 92 (326)
+.|++++++ +++++.++.|++||..+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456676665 7788899999999999999988887766677 9999999997766665 89999999999886 555554
Q ss_pred CCCcce-eeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCc-
Q 020461 93 DSPARS-VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAI- 169 (326)
Q Consensus 93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~- 169 (326)
...... +.++++...+++...... ...+.+++.. .++.+..+..+ .....++|+|++++++ +...++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~--~~~i~v~d~~------~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~ 152 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNH--PFNMQSYSFL------KNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANT 152 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSS--SCEEEEEETT------TTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTE
T ss_pred CCCCccceEECCCCCEEEEecCCCC--cccEEEEECC------CCCeEEEEECC-CCccceEECCCCCEEEEEecCCCce
Confidence 444444 788887766554332200 0023333321 23334444433 3468999999998554 5566688
Q ss_pred EEEEECCCCcccccc-ccccCcceeeEEEEEcCCCCeEEE-EeCCCeEEEeecCCcce---EEEEeeccceEEEEeCCCC
Q 020461 170 VRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLEL---IKTYVTERPVNAVTMSPLL 244 (326)
Q Consensus 170 i~~wd~~~~~~~~~~-~~~~~h~~~v~~v~~s~~~~~l~s-~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~s~~~ 244 (326)
|.+|++.....+... ............++++|+|++++. +..++.|++||+++++. +..+.....+..++++|++
T Consensus 153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 232 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDG 232 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTS
T ss_pred EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCC
Confidence 999998754332111 111122345789999999996655 45689999999999988 7777777778899999999
Q ss_pred CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe-ecCCCcEEEeecCCCc
Q 020461 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS-GGEDGYVRLHHFDPDY 321 (326)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat-~s~Dg~i~l~~~~~~~ 321 (326)
+.++++...+. .+..+|...+..... .... ..+............++|+|||++|++ +..++.|++|++....
T Consensus 233 ~~l~v~~~~~~-~i~~~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 233 STVYVLTESTV-DVFNFNQLSGTLSFV--KSFG-HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SEEEEECSSEE-EEEEEETTTTEEEEE--EEEE-CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CEEEEEEcCCC-EEEEEECCCCceeee--cccc-cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 98877654332 244455544332110 0000 000000011112356999999998754 4556799999987643
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=4.8e-24 Score=199.04 Aligned_cols=281 Identities=10% Similarity=-0.012 Sum_probs=194.2
Q ss_pred CCceeEEEEccCCCEEEeecC-CC-----CeEEEecCCCCeeeeccCccc------------------------ceEEEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAK-DH-----TPTVWFADNGERLGTYRGHNG------------------------AVWCCD 59 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~-d~-----~v~iw~~~~~~~~~~~~~h~~------------------------~V~~~~ 59 (326)
...+.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 346889999999999999998 88 899999999987766655432 388999
Q ss_pred EcCCCCeEEEEeCCCcEEEEEccCC---cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCC
Q 020461 60 VSRDSMTLITGSADQTAKLWNVETG---AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136 (326)
Q Consensus 60 ~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (326)
|+|||++|++++. +.|.+||+.++ +..........+..+.|+++++.++...+. .+.++.+. ++
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~------~i~~~d~~------~g 182 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR------NLWVIDLA------SG 182 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT------EEEEEETT------TT
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC------cEEEEecC------CC
Confidence 9999999998887 89999999987 543322334556778899887755554432 23333221 12
Q ss_pred ceEEEeccCcc----------------ceeEEEEecCCcEEEEeeCCC--------------------------------
Q 020461 137 ESVLILKGPQG----------------RINRAVWGPLNRTIISAGEDA-------------------------------- 168 (326)
Q Consensus 137 ~~~~~~~~~~~----------------~i~~~~~~~~~~~l~s~~~d~-------------------------------- 168 (326)
........+.. .+..+.|+|+++.|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 22222222222 247799999999999887765
Q ss_pred -cEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeC-----CCeEEEeecCCcceEEEEeecc-----ceE
Q 020461 169 -IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDARTLELIKTYVTER-----PVN 236 (326)
Q Consensus 169 -~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~-----~~~ 236 (326)
.|.+||+.+ ++.... .....|...+..++| |||++|+.++. +..|++||+.++++...+.... .+.
T Consensus 263 ~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWI-DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEECSSTTCCCEEE-CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eEEEEEECCCCCceEEe-cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788999988 765332 211257788999999 99999997764 5789999999988766654332 346
Q ss_pred EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE-EECCCCceEE-eecCCC--cE
Q 020461 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL-AFNPDGKSFS-SGGEDG--YV 312 (326)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v-~~s~d~~~la-t~s~Dg--~i 312 (326)
.++|+|+++.++++ ..++. ..++.++.... ...+..|...|..+ .|+|||+.|+ +++.|+ .+
T Consensus 341 ~~~~spdg~~~~~~-~~~g~-----------~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~ 406 (741)
T 2ecf_A 341 SLRFLDDGSILWSS-ERTGF-----------QHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARES 406 (741)
T ss_dssp CCEECTTSCEEEEE-CTTSS-----------CEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred ceEECCCCeEEEEe-cCCCc-----------cEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence 88999999854444 33321 12222332111 33455677778887 5999998764 555566 89
Q ss_pred EEeecCC
Q 020461 313 RLHHFDP 319 (326)
Q Consensus 313 ~l~~~~~ 319 (326)
+||.++.
T Consensus 407 ~l~~~~~ 413 (741)
T 2ecf_A 407 QIYAVPL 413 (741)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 9999864
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=2.4e-23 Score=176.17 Aligned_cols=253 Identities=11% Similarity=0.113 Sum_probs=167.1
Q ss_pred eecCCceeEEEEccCCCEEEeecCC-CCeEEEecC--CCCe--eeeccCcccceEEEEEcCCCCeEEEEeC-CCcEEEEE
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAKD-HTPTVWFAD--NGER--LGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWN 80 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~d-~~v~iw~~~--~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd 80 (326)
..|...+.+++|+|++++|++++.+ +.|++|++. +++. +..+..+. .+..++|+|+++++++++. ++.|.+||
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 4577788999999999988888876 999999987 5553 34454444 7889999999998877665 88899999
Q ss_pred ccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (326)
+..+...... ..+. ....+..++|+|+++.
T Consensus 113 ~~~~~~~~~~-------------------------------------------------~~~~-~~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 113 LEDGLPVGVV-------------------------------------------------DVVE-GLDGCHSANISPDNRT 142 (343)
T ss_dssp EETTEEEEEE-------------------------------------------------EEEC-CCTTBCCCEECTTSSE
T ss_pred CCCCcccccc-------------------------------------------------cccc-CCCCceEEEECCCCCE
Confidence 8532211000 0001 1123667889999998
Q ss_pred EEEee-CCCcEEEEECCC-Ccccccc--ccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCC--cce--EEEEee
Q 020461 161 IISAG-EDAIVRIWDTET-GKLLKES--DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART--LEL--IKTYVT 231 (326)
Q Consensus 161 l~s~~-~d~~i~~wd~~~-~~~~~~~--~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~--~~~--~~~~~~ 231 (326)
+++++ .++.|.+||+.+ ++..... .........+..++++|++.++++++ .++.|++||+.. ++. ......
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~ 222 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM 222 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc
Confidence 87776 899999999987 5432211 11112334678899999999776554 789999999953 433 222221
Q ss_pred -------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEE
Q 020461 232 -------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS 304 (326)
Q Consensus 232 -------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~la 304 (326)
...+..++++|+++.++++...+. .+..+|..... ...+.+..+..+.. +..++|+|||++|+
T Consensus 223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~-~i~v~d~~~~~--------~~~~~~~~~~~~~~-~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 223 MPENFSDTRWAADIHITPDGRHLYACDRTAS-LITVFSVSEDG--------SVLSKEGFQPTETQ-PRGFNVDHSGKYLI 292 (343)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETTTT-EEEEEEECTTS--------CCEEEEEEEECSSS-CCCEEECTTSSEEE
T ss_pred cCccccccCCccceEECCCCCEEEEEecCCC-EEEEEEEcCCC--------CceEEeeeecCCCc-cceEEECCCCCEEE
Confidence 123557999999988876654332 22233322100 01122222233333 88999999999887
Q ss_pred eec-CCCcEEEeecCCC
Q 020461 305 SGG-EDGYVRLHHFDPD 320 (326)
Q Consensus 305 t~s-~Dg~i~l~~~~~~ 320 (326)
+++ .|+.|++|+++++
T Consensus 293 ~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 293 AAGQKSHHISVYEIVGE 309 (343)
T ss_dssp EECTTTCEEEEEEEETT
T ss_pred EecCCCCeEEEEEEcCC
Confidence 777 6899999988764
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=8.4e-24 Score=196.82 Aligned_cols=289 Identities=11% Similarity=0.018 Sum_probs=191.0
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc---ceEEEEEcCCCCeEEEEeCC---------CcEEEE
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSAD---------QTAKLW 79 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~~~d---------~~i~~w 79 (326)
.+.+++|+|||+++++ +.|++|++||..+++....+.+|.. .|.+++|||||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3678899999997766 7899999999999988877877765 49999999999999999875 678899
Q ss_pred EccCCcEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc---------
Q 020461 80 NVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--------- 147 (326)
Q Consensus 80 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 147 (326)
|+.+++........ ..+..+.|+++++.++..... .+.++... +++.......+..
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~------~i~~~~~~------~g~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN------NIYYCAHV------GKQAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT------EEEEESSS------SSCCEEEECCCBTTTEEEEECC
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEECC------eEEEEECC------CCceEEEecCCCCCceECcccc
Confidence 99988763221111 125567888877554444331 22222221 2233333333332
Q ss_pred ---------ceeEEEEecCCcEEEEeeCCC----------------------------------cEEEEECCCCcccccc
Q 020461 148 ---------RINRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLLKES 184 (326)
Q Consensus 148 ---------~i~~~~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~~~~ 184 (326)
.+..+.|+|+++.|++++.|+ .|++||+.+++....+
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence 237899999999999887653 7999999887653333
Q ss_pred cc---ccCcceeeEEEEEcCCCCeEEEEeC----CCeEEEeecCCcceEEEEee--ccce----EEEEeCCCCCeeEEe-
Q 020461 185 DK---ETGHKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLELIKTYVT--ERPV----NAVTMSPLLDHVVLG- 250 (326)
Q Consensus 185 ~~---~~~h~~~v~~v~~s~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~--~~~~----~~~~~s~~~~~~~~~- 250 (326)
.. ...+...+..++|+|||+++++.+. +..|++||+.++++...+.. ...+ ..++|+|+++.++..
T Consensus 245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 324 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR 324 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEE
Confidence 21 1123678899999999998877654 35799999999887665432 2222 378999999987765
Q ss_pred cCCCcceeEeecccCceeeeEeec-cccee--eeccccccCcceeE-EEECCCCceEEeecCC---CcEEEeecCCC
Q 020461 251 GGQDASAVTTTDHRAGKFEAKFFD-KILQE--EIGGVKGHFGPINA-LAFNPDGKSFSSGGED---GYVRLHHFDPD 320 (326)
Q Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~--~~~~~~~h~~~v~~-v~~s~d~~~lat~s~D---g~i~l~~~~~~ 320 (326)
...++. ......++.|+ ...+. ....+..+...+.. ++|||||+.|+..+.+ +.++||.++.+
T Consensus 325 ~~~~~~-------~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 325 AIPQGG-------RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EECCSS-------SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred ecccCC-------CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 322220 00112344454 12221 02233333334444 7999999998766554 89999998753
No 135
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=1.4e-22 Score=172.12 Aligned_cols=263 Identities=15% Similarity=0.101 Sum_probs=169.5
Q ss_pred eeecCCceeEEEEccCCCEEEeecC---CCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEE
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW 79 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~---d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~w 79 (326)
...+...+..++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|++++|++++ .+++|++|
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 344566778899999999 555443 6899999997765 3445556777888999999999888888 78999999
Q ss_pred EccC-CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461 80 NVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (326)
Q Consensus 80 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (326)
++.. +......... .. ..+.. .+.....+..++|+|++
T Consensus 114 ~~~~~g~~~~~~~~~-----------------------------------~~---~~~p~---~~~~~~~~~~~~~spdg 152 (347)
T 3hfq_A 114 KIAADGALTLTDTVQ-----------------------------------HS---GHGPR---PEQDGSHIHYTDLTPDN 152 (347)
T ss_dssp EECTTSCEEEEEEEE-----------------------------------CC---CCCSS---TTCSSCCEEEEEECTTS
T ss_pred EeCCCCCeeecceee-----------------------------------cC---CCCCC---ccccCCCceEEEECCCC
Confidence 9853 2221110000 00 00000 01223457789999999
Q ss_pred cEEEEeeCCCcEEEEECC-CCccccccccccCcceeeEEEEEcCCCCeEEE-EeCCCeEEEeecCC--cce--EEEEee-
Q 020461 159 RTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDART--LEL--IKTYVT- 231 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s-~s~dg~i~iwd~~~--~~~--~~~~~~- 231 (326)
+.+++...++.|.+||+. +++..............+..++|+|||+++++ +..++.|++|++.. ++. +..+..
T Consensus 153 ~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 153 RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 966777778999999998 45432211111112235678999999996665 56688999999874 443 222221
Q ss_pred c------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe
Q 020461 232 E------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 305 (326)
Q Consensus 232 ~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat 305 (326)
. ..+..++++|+++.++++...+. .+..++.... .....+..+..+...+..++|+|||++|++
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~~~-~v~v~~~~~~---------g~~~~~~~~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNRGYN-TLAVFAVTAD---------GHLTLIQQISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEETTT-EEEEEEECGG---------GCEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeCCCC-EEEEEEECCC---------CcEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence 1 24778999999998866543222 1222221100 011223333445556889999999998877
Q ss_pred ecC-CCcEEEeecCCC
Q 020461 306 GGE-DGYVRLHHFDPD 320 (326)
Q Consensus 306 ~s~-Dg~i~l~~~~~~ 320 (326)
++. ++.|++|.++++
T Consensus 303 ~~~~~~~v~v~~~d~~ 318 (347)
T 3hfq_A 303 VNQNTDNATLYARDLT 318 (347)
T ss_dssp EETTTTEEEEEEECTT
T ss_pred EEcCCCcEEEEEEeCC
Confidence 765 599999988765
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.1e-21 Score=166.81 Aligned_cols=275 Identities=12% Similarity=0.102 Sum_probs=191.6
Q ss_pred cCCceeEEEEccCCCEEEeecC-------CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCcEEEEE
Q 020461 9 HERPLTYLKYNKDGDLLFSCAK-------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWN 80 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~-------d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~i~~wd 80 (326)
....+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3456789999999998887774 56899999999998877764 33477899999998654 455679999999
Q ss_pred ccCCcEEEEEecCCC----------cceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCccce
Q 020461 81 VETGAQLFTFNFDSP----------ARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (326)
Q Consensus 81 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (326)
+.+++.+..+..... ...+.++++...+++.. .. ...+..++. ..++....+..+...+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~------~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWVVDG------GNIKLKTAIQNTGKMS 187 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEET------TTTEEEEEECCCCTTC
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEEEcC------CCCceEEEecCCCCcc
Confidence 999988777665321 34567777655443332 11 112222222 1234445555455567
Q ss_pred eEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc-ccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCcceEE
Q 020461 150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIK 227 (326)
Q Consensus 150 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~ 227 (326)
..+.|+|+++.+++++.++.|.+||+.+++....+.. ..++...+..++++|++.+++.++. ++.|.+||.++++.+.
T Consensus 188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 8899999999999999999999999998877655432 2235566888999999998777665 5999999999999888
Q ss_pred EEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461 228 TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 307 (326)
Q Consensus 228 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s 307 (326)
.+.... ...++++|+++.++++...+. .+..+|... .+.+..+.. ...+..++|+|||++|+.+.
T Consensus 268 ~~~~~~-~~~~~~s~dg~~l~v~~~~~~-~v~~~d~~~------------~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 268 KVAAPE-SLAVLFNPARNEAYVTHRQAG-KVSVIDAKS------------YKVVKTFDT-PTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp EEECSS-CCCEEEETTTTEEEEEETTTT-EEEEEETTT------------TEEEEEEEC-CSEEEEEEECTTSCEEEEEE
T ss_pred EEEcCC-CceEEECCCCCEEEEEECCCC-eEEEEECCC------------CeEEEEEec-CCCCCeEEEcCCCCEEEEEE
Confidence 876544 367899999998777654333 233334332 222222222 23678999999999766665
Q ss_pred CC
Q 020461 308 ED 309 (326)
Q Consensus 308 ~D 309 (326)
.+
T Consensus 333 ~~ 334 (353)
T 3vgz_A 333 KQ 334 (353)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=9.9e-23 Score=168.45 Aligned_cols=245 Identities=13% Similarity=0.091 Sum_probs=172.4
Q ss_pred eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC-CCeeeeccCcc-cceEEEEEcCCCCeEEEEe--CCCcEEEE
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHN-GAVWCCDVSRDSMTLITGS--ADQTAKLW 79 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~--~d~~i~~w 79 (326)
..+..|...+.+++|+|+|++|++++ ++.|++|++.+ ++.......|. ..|.+++|+|++++|++++ .++..++|
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 45677889999999999999999886 78999999999 88777776664 6789999999999999998 44667777
Q ss_pred EccC--CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 80 NVET--GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 80 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
.++. ++.. .+..+ ..+..+.|+|+
T Consensus 114 ~~~~~~~~~~-----------------------------------------------------~~~~~-~~~~~~~~spd 139 (297)
T 2ojh_A 114 LLPSTGGTPR-----------------------------------------------------LMTKN-LPSYWHGWSPD 139 (297)
T ss_dssp EEETTCCCCE-----------------------------------------------------ECCSS-SSEEEEEECTT
T ss_pred EEECCCCceE-----------------------------------------------------EeecC-CCccceEECCC
Confidence 6532 1110 00111 13667789999
Q ss_pred CcEEE-EeeCCCcEEEEECC--CCccccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecC-CcceEEEEe-e
Q 020461 158 NRTII-SAGEDAIVRIWDTE--TGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR-TLELIKTYV-T 231 (326)
Q Consensus 158 ~~~l~-s~~~d~~i~~wd~~--~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~-~ 231 (326)
++.|+ +++.++.+++|++. +++. .. ...|...+.+++|+|++.+|+.++ .++.+++|++. .+..+..+. .
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 215 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDIDSGVE-TR---LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS 215 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTCCE-EE---CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC
T ss_pred CCEEEEEECCCCceEEEEEECCCCcc-eE---cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC
Confidence 99777 78889999999863 3332 22 234667889999999999888766 58999999886 444445443 3
Q ss_pred ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee--eeccccccCcceeEEEECCCCceEEeecCC
Q 020461 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE--EIGGVKGHFGPINALAFNPDGKSFSSGGED 309 (326)
Q Consensus 232 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~s~d~~~lat~s~D 309 (326)
...+..++|+|+++.+++++..+.... ........+++|+...++ .+..+.+|...+..++|+||+++|++++.|
T Consensus 216 ~~~~~~~~~s~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 216 AYGDWFPHPSPSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SEEEEEEEECTTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CcccCCeEECCCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 446778999999998877654321100 000011234555543322 233344678889999999999999888776
Q ss_pred C
Q 020461 310 G 310 (326)
Q Consensus 310 g 310 (326)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 4
No 138
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=8.7e-23 Score=178.34 Aligned_cols=195 Identities=12% Similarity=0.089 Sum_probs=142.9
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCC----------eeeec-----cCcccceEEEEEcCCCCeEE----EE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----------RLGTY-----RGHNGAVWCCDVSRDSMTLI----TG 70 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~----------~~~~~-----~~h~~~V~~~~~~~~~~~l~----s~ 70 (326)
...+..+++++++.++++++.|+ +++|+..+.. .+..+ ..|.+.|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34578999999999999999988 8888653210 11111 13456799999999999999 88
Q ss_pred eCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcccee
Q 020461 71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (326)
Q Consensus 71 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (326)
+.|++|++||+.++.. ..... .........+.+|...|.
T Consensus 115 s~d~~v~iwd~~~~~~-----~~~~~------------------------------------~~~~~~~~~~~~h~~~V~ 153 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSN-----EAKQQ------------------------------------KRPFAYHKLLKDAGGMVI 153 (434)
T ss_dssp TTEEEEEEEEHHHHHC-----TTCSS------------------------------------CCCSEEEECCCSGGGSEE
T ss_pred CCCceEEEEEcccccc-----CCcCC------------------------------------cceeeeeeccCCCCCceE
Confidence 8999999999875410 00000 000011233467889999
Q ss_pred EEEEecC-CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461 151 RAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 151 ~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
+++|+|+ +.+|++++.||+|++||++++..... ..+|...+++++|+|+|.+|++|+.||+|++||++ ++....+
T Consensus 154 ~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~---~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~ 229 (434)
T 2oit_A 154 DMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA---TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI 229 (434)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE---EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred EEEECCCCCCEEEEEECCCeEEEEEcCCCcceee---ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence 9999998 78999999999999999998754332 24688899999999999999999999999999998 5555544
Q ss_pred eec--------cceEEEEeCCCCCeeEEe
Q 020461 230 VTE--------RPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 230 ~~~--------~~~~~~~~s~~~~~~~~~ 250 (326)
... ..+.+++|++....+++.
T Consensus 230 ~~~~~~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 230 PCPPFYESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp CCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred cCCcccCCCCceeEEEEEEecCceEEEEE
Confidence 311 267788888876555443
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=9.3e-21 Score=175.90 Aligned_cols=289 Identities=11% Similarity=0.046 Sum_probs=187.8
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC-----Cc
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-----GA 85 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~ 85 (326)
..+.+++|||| +.++.+ .++.+++||+.+++... +..+.+.+..++|+|||++|+.+ .|+.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56899999999 655544 35999999998886543 44567778999999999998884 789999999998 76
Q ss_pred EEEEEecCCC---------------cceeeeecCCeEEEEEc-Ccc----c-----------------------eeceee
Q 020461 86 QLFTFNFDSP---------------ARSVDFAVGDKLAVITT-DPF----M-----------------------ELNSAI 122 (326)
Q Consensus 86 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~----~-----------------------~~~~~~ 122 (326)
.......... ...+.|+++++.++... +.. . .....+
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 6543322222 35678888776555443 100 0 001112
Q ss_pred eeeeeccCCCCCCCceEEEe--ccCccceeEEEEecCCcEEEEeeCCC-----cEEEEECCCCccccccccc--cCccee
Q 020461 123 HVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDA-----IVRIWDTETGKLLKESDKE--TGHKKT 193 (326)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~--~~h~~~ 193 (326)
.++++. ++...... ..+...+..+.|+|+++.|++++.++ .|.+||+.+++....+... ......
T Consensus 238 ~~~d~~------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 238 GIYHLA------TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEETT------TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred EEEECC------CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 222221 12222211 24567789999999999999887776 8999999988433322211 011122
Q ss_pred eEEEEEcC--CCCeEEEEeCCCeEEEeecC-CcceEEEEee-ccceEE-EEeCCCCCeeEEecCCCcceeEeecccCcee
Q 020461 194 ITSLAKAA--DGSHFLTGSLDKSAKLWDAR-TLELIKTYVT-ERPVNA-VTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268 (326)
Q Consensus 194 v~~v~~s~--~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~-~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~ 268 (326)
+.++.|+| ||.++++++.|+.+++|++. ++..+..+.. ...+.. ++|+|+++.+++++..+.. ...
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~---------~~~ 382 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP---------LER 382 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT---------TCB
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC---------ceE
Confidence 46789999 99999999999999999876 5566665543 234554 7999999988776654430 001
Q ss_pred eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC----CcEEEeecCCC
Q 020461 269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED----GYVRLHHFDPD 320 (326)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D----g~i~l~~~~~~ 320 (326)
.++.++...+. ...+ .|...+.+++|||||++++..+.+ +.|.+|+.+..
T Consensus 383 ~l~~~d~~~~~-~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 383 HFYCIDIKGGK-TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEEEETTCCC-CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred EEEEEEcCCCC-ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 22223322221 1112 255678999999999988776443 56999987654
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=1.8e-21 Score=176.85 Aligned_cols=270 Identities=13% Similarity=0.087 Sum_probs=176.1
Q ss_pred CCceeEEEEccCCCEEEeecC-CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC---CCcEEEEEccC--
Q 020461 10 ERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVET-- 83 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~---d~~i~~wd~~~-- 83 (326)
..+|.+++|+|||++||+++. |++++||++.+++.......+...|..++|+|| +.+++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999887 999999998666654433333368999999999 78887775 56667776543
Q ss_pred -CcEEEEEecCCCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 84 -GAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
+... .+..........++++.. +++++... ....++.+. +++.......+ . .+++|+|+|+.|
T Consensus 100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~-----~~~~l~d~~------~g~~~~l~~~~-~--~~~~~spDG~~l 164 (582)
T 3o4h_A 100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATE-----DRVALYALD------GGGLRELARLP-G--FGFVSDIRGDLI 164 (582)
T ss_dssp TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECS-----SCEEEEEEE------TTEEEEEEEES-S--CEEEEEEETTEE
T ss_pred CCccc-cccCCCCceeeeeCCCCCeEEEEecCC-----CCceEEEcc------CCcEEEeecCC-C--ceEEECCCCCEE
Confidence 2222 222222333445665442 33322211 011123221 22222222222 2 788999999999
Q ss_pred EEeeCC----CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC--eEEEeecCCcceEEEEe-eccc
Q 020461 162 ISAGED----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDARTLELIKTYV-TERP 234 (326)
Q Consensus 162 ~s~~~d----~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~-~~~~ 234 (326)
++++.+ +.|++||+.+++.. .+ ..|...+..++|||||+.|+++..++ .|++||+.+++.. .+. +...
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g~~~-~l---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSGGLR-VF---DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTCCCE-EE---CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred EEEEEcCCCCeEEEEEcCCCCCce-Ee---ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 988877 78999999887654 22 35777889999999999999888898 8999999998876 332 2233
Q ss_pred eEEEE--------eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee
Q 020461 235 VNAVT--------MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 306 (326)
Q Consensus 235 ~~~~~--------~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~ 306 (326)
+..++ |+|++ .+++++..++. .++|.. ++... .+.+.|.+++|+ |+++++++
T Consensus 240 ~~~~~~~~~~~~~~spdg-~~~~~~~~~g~-------------~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~ 299 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDG-RLAVVARREGR-------------SAVFID--GERVE---APQGNHGRVVLW-RGKLVTSH 299 (582)
T ss_dssp HHHHCCSEEEEEEECTTS-CEEEEEEETTE-------------EEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEE
T ss_pred hhhhhhccccceeEcCCC-cEEEEEEcCCc-------------EEEEEE--CCeec---cCCCceEEEEec-CCEEEEEE
Confidence 44455 99999 55554443321 233333 22222 234678999999 99999888
Q ss_pred cCCCc-EEEeecCCC
Q 020461 307 GEDGY-VRLHHFDPD 320 (326)
Q Consensus 307 s~Dg~-i~l~~~~~~ 320 (326)
+.+.+ -++|.++.+
T Consensus 300 s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 300 TSLSTPPRIVSLPSG 314 (582)
T ss_dssp EETTEEEEEEEETTC
T ss_pred cCCCCCCeEEEEcCC
Confidence 87754 445555543
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=5.3e-21 Score=184.67 Aligned_cols=296 Identities=11% Similarity=-0.003 Sum_probs=192.3
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCC------CCeEEEecCCCCeeeeccCcccce-------EEEEEcCCCCeEEE
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGAV-------WCCDVSRDSMTLIT 69 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~h~~~V-------~~~~~~~~~~~l~s 69 (326)
+..+.+|...+.+++|||||++||.++.+ ..|++|++.+++ ...+..|...+ ..++|+|||+++++
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~ 123 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 123 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence 46678899999999999999999987643 479999998776 56788888888 99999999997788
Q ss_pred EeCC------CcEEEEEccCCcEEEEEec--------------------------------------------------C
Q 020461 70 GSAD------QTAKLWNVETGAQLFTFNF--------------------------------------------------D 93 (326)
Q Consensus 70 ~~~d------~~i~~wd~~~~~~~~~~~~--------------------------------------------------~ 93 (326)
++.+ ..|.+||+.+++....... .
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~ 203 (1045)
T 1k32_A 124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203 (1045)
T ss_dssp ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence 7755 3467777766654321110 0
Q ss_pred CCcceeeeecCCeEEEEEcC-ccceecee----eeeeeeccCCC--------CC----------------CCceEEEecc
Q 020461 94 SPARSVDFAVGDKLAVITTD-PFMELNSA----IHVKRIARDPA--------DQ----------------GGESVLILKG 144 (326)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~--------~~----------------~~~~~~~~~~ 144 (326)
..+....|+++ .+++.+.. ....+... .....+..... +. ....+..+.+
T Consensus 204 ~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~ 282 (1045)
T 1k32_A 204 THVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEI 282 (1045)
T ss_dssp SCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCC
T ss_pred CcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeecc
Confidence 01111112222 22222211 10000000 00000000000 00 0011112222
Q ss_pred -----------CccceeEEEEe-cCCcEEEEeeCCCcEEEEECCCCccccccccccCcce-eeEEEEEcCCCCeEEEEeC
Q 020461 145 -----------PQGRINRAVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-TITSLAKAADGSHFLTGSL 211 (326)
Q Consensus 145 -----------~~~~i~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~-~v~~v~~s~~~~~l~s~s~ 211 (326)
|...+..+.|+ |+++.+++++ ++.|.+|+..+++... + ..|.. .+..++|+ ||..|++++.
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~---~~~~~~~~~~~~~s-dg~~l~~~s~ 356 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V---PEPLRIRYVRRGGD-TKVAFIHGTR 356 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C---SCCSCEEEEEECSS-SEEEEEEEET
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-c---cCCCcceEEeeeEc-CCCeEEEEEC
Confidence 23368889999 9999888877 7889999988765432 2 24555 88999999 9999999999
Q ss_pred CCeEE-EeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc
Q 020461 212 DKSAK-LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 290 (326)
Q Consensus 212 dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 290 (326)
++.+. +||+.+++...-..+...+..++|+|+++.++.+.... .+++|+...++......+|.+.
T Consensus 357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~--------------~v~~~d~~tg~~~~~~~~~~~~ 422 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF--------------EIMTVDLETGKPTVIERSREAM 422 (1045)
T ss_dssp TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS--------------EEEEEETTTCCEEEEEECSSSC
T ss_pred CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCC--------------eEEEEECCCCceEEeccCCCCC
Confidence 88898 99998776543333345688999999999887664322 2445555444444444578889
Q ss_pred eeEEEECCCCceEEeecCCC----------cEEEeecCCC
Q 020461 291 INALAFNPDGKSFSSGGEDG----------YVRLHHFDPD 320 (326)
Q Consensus 291 v~~v~~s~d~~~lat~s~Dg----------~i~l~~~~~~ 320 (326)
+..++|||||++||+++.++ .|++|+++..
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 99999999999999888754 9999988753
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=1.2e-20 Score=182.18 Aligned_cols=286 Identities=13% Similarity=0.076 Sum_probs=202.2
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC-CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
.+.+|...+.++.|+++ .++++++.|+.++||.... +.....+..|. .+..++|+|||+.++.+ .++.|.+||+..
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 44789999999999998 6777888899999997653 33444555555 45677999999988887 588999999954
Q ss_pred CcEEEEEecC------------CCcceeeee-cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc-ce
Q 020461 84 GAQLFTFNFD------------SPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-RI 149 (326)
Q Consensus 84 ~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 149 (326)
.+.. .+..+ ..+..+.|+ +++..++..... .+.++... .+ ....+..|.. .+
T Consensus 275 ~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~------~i~~~~~~------~~-~~~~~~~~~~~~~ 340 (1045)
T 1k32_A 275 EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG------QAFIQDVS------GT-YVLKVPEPLRIRY 340 (1045)
T ss_dssp CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT------EEEEECTT------SS-BEEECSCCSCEEE
T ss_pred eEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcC------EEEEEcCC------CC-ceEEccCCCcceE
Confidence 4433 33221 135677788 766544433221 12222211 11 2334556666 88
Q ss_pred eEEEEecCCcEEEEeeCCCcEE-EEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461 150 NRAVWGPLNRTIISAGEDAIVR-IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (326)
Q Consensus 150 ~~~~~~~~~~~l~s~~~d~~i~-~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (326)
..+.|+ +++.|++++.++.+. +||+.+++.. .+ .+|...+..++|+|||++|++++.++.|++||+.+++....
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l---~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KF---EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 415 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-EC---CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Ee---cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe
Confidence 999999 999999998888888 9998876543 22 25777899999999999999999999999999999887766
Q ss_pred E-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461 229 Y-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 307 (326)
Q Consensus 229 ~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s 307 (326)
. .+...+..++|+|+++.++.++..+... ........+++|+...++ ...+..|...+..++|+|||++|++++
T Consensus 416 ~~~~~~~v~~~~~SpDG~~la~~~~~~~~~----~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 416 ERSREAMITDFTISDNSRFIAYGFPLKHGE----TDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp EECSSSCCCCEEECTTSCEEEEEEEECSST----TCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred ccCCCCCccceEECCCCCeEEEEecCcccc----ccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence 5 3445678999999999887664321000 000111245666655444 445667888899999999999999999
Q ss_pred CCCcEEEeec
Q 020461 308 EDGYVRLHHF 317 (326)
Q Consensus 308 ~Dg~i~l~~~ 317 (326)
.++..++|..
T Consensus 491 ~~~~~~~~~~ 500 (1045)
T 1k32_A 491 YRSLDPSPDR 500 (1045)
T ss_dssp SCCCCCEECS
T ss_pred cccCCcCcch
Confidence 9888877754
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=1e-20 Score=176.51 Aligned_cols=282 Identities=10% Similarity=0.042 Sum_probs=182.2
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
.+.+++|||||++|++++. +.|++|++.++. .+..+..|...+..++|+|||++|+.++. +.|.+||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 3788999999999998887 899999999883 45567778889999999999999988874 5899999998776543
Q ss_pred EecCCC-----------------cceeeeecCCeEEEEE-cCcc-cee------------------------ce--eeee
Q 020461 90 FNFDSP-----------------ARSVDFAVGDKLAVIT-TDPF-MEL------------------------NS--AIHV 124 (326)
Q Consensus 90 ~~~~~~-----------------~~~~~~~~~~~~~~~~-~~~~-~~~------------------------~~--~~~~ 124 (326)
...... ...+.|+++++.++.. .+.. ... +. .+.+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 322111 3557788876644433 2210 000 00 1111
Q ss_pred eeeccCCCCCC-CceEEEec--cCccceeEEEEecCCcEEEEeeC-----CCcEEEEECCCCccccccccccCcce----
Q 020461 125 KRIARDPADQG-GESVLILK--GPQGRINRAVWGPLNRTIISAGE-----DAIVRIWDTETGKLLKESDKETGHKK---- 192 (326)
Q Consensus 125 ~~~~~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~~h~~---- 192 (326)
+++ .+ ++...... .|...+..++| |+++.|++++. +..|.+||+.+++...... .+..
T Consensus 268 ~d~------~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~ 337 (741)
T 2ecf_A 268 ISP------AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH---ETSPTWVP 337 (741)
T ss_dssp ECS------STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE---EECSSCCC
T ss_pred EEC------CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE---cCCCCcCC
Confidence 111 11 22222222 46778899999 99998886653 5689999999887654332 1211
Q ss_pred eeEEEEEcCCCCeEEEEeCCCeEEEeecC-CcceEEEEee-ccceEEE-EeCCCCCeeEEecCCCcceeEeecccCceee
Q 020461 193 TITSLAKAADGSHFLTGSLDKSAKLWDAR-TLELIKTYVT-ERPVNAV-TMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 269 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~-~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 269 (326)
.+..++|+|||+++++++.||.+++|.+. .+. ...+.. ...+..+ .|+|+++.++.++..+.. ..
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~-----------~~ 405 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA-----------RE 405 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT-----------TC
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC-----------ce
Confidence 35688999999999999999988888765 334 444432 3456565 599999887766554321 01
Q ss_pred eEeecccc-eeeeccccccCcceeEEEECCCCceEEeecCC----CcEEEeecC
Q 020461 270 AKFFDKIL-QEEIGGVKGHFGPINALAFNPDGKSFSSGGED----GYVRLHHFD 318 (326)
Q Consensus 270 ~~~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D----g~i~l~~~~ 318 (326)
.++|.... +.....+.. ...+..++|||||++|+....+ ..+.+++.+
T Consensus 406 ~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 406 SQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp BEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred EEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 12222111 111122232 4568899999999998766443 456666543
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=3.1e-20 Score=162.19 Aligned_cols=163 Identities=10% Similarity=0.014 Sum_probs=127.8
Q ss_pred ecCCceeEEEEccCCCEEE----eecCCCCeEEEecCCC--------C---eeeeccCcccceEEEEEcCC-CCeEEEEe
Q 020461 8 GHERPLTYLKYNKDGDLLF----SCAKDHTPTVWFADNG--------E---RLGTYRGHNGAVWCCDVSRD-SMTLITGS 71 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~----s~~~d~~v~iw~~~~~--------~---~~~~~~~h~~~V~~~~~~~~-~~~l~s~~ 71 (326)
.|...|.+++|+|++++|+ +++.|++|+|||+.++ + .+..+.+|...|.+++|+|+ +++|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4566799999999999999 8999999999998654 1 24567789999999999998 78999999
Q ss_pred CCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461 72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (326)
Q Consensus 72 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (326)
.|++|++||++++.... ...+|...|.+
T Consensus 170 ~Dg~v~iwD~~~~~~~~----------------------------------------------------~~~~~~~~v~~ 197 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVC----------------------------------------------------ATLPSTVAVTS 197 (434)
T ss_dssp TTSCEEEEEESSSEEEE----------------------------------------------------EEECGGGCEEE
T ss_pred CCCeEEEEEcCCCccee----------------------------------------------------eccCCCCceeE
Confidence 99999999998653211 11245678999
Q ss_pred EEEecCCcEEEEeeCCCcEEEEECCCCcccccccc----ccCcceeeEEEEEcCCCCeEEEE-eCCC------eEEEeec
Q 020461 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTG-SLDK------SAKLWDA 220 (326)
Q Consensus 152 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~h~~~v~~v~~s~~~~~l~s~-s~dg------~i~iwd~ 220 (326)
++|+|++++|++|+.||+|++||.+ ++....+.. ...|...+.+++|++++.++++. +.|| .+++|++
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 9999999999999999999999998 433332221 11345689999999998777553 3443 3899999
Q ss_pred CCc
Q 020461 221 RTL 223 (326)
Q Consensus 221 ~~~ 223 (326)
++.
T Consensus 277 ~~~ 279 (434)
T 2oit_A 277 PKK 279 (434)
T ss_dssp CCT
T ss_pred ccC
Confidence 864
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1e-20 Score=156.25 Aligned_cols=222 Identities=11% Similarity=-0.042 Sum_probs=154.7
Q ss_pred eecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC-CcEEEEEecCCCcceeeeecCC
Q 020461 27 SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFNFDSPARSVDFAVGD 105 (326)
Q Consensus 27 s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~ 105 (326)
+.+.|++|++||+.+++.. .+..|.+.|.+++|+|++++|++++ ++.|.+||+.+ ++.....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~--------------- 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD--------------- 79 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC---------------
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec---------------
Confidence 4568899999999888765 4556889999999999999998876 78999999987 5432110
Q ss_pred eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC-ccceeEEEEecCCcEEEEee--CCCcEEEEEC--CCCcc
Q 020461 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAG--EDAIVRIWDT--ETGKL 180 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~--~d~~i~~wd~--~~~~~ 180 (326)
.++ ...+.++.|+|+++.|++++ .++..+||.+ .+++.
T Consensus 80 -------------------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~ 122 (297)
T 2ojh_A 80 -------------------------------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP 122 (297)
T ss_dssp -------------------------------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC
T ss_pred -------------------------------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce
Confidence 111 24567789999999999988 3455666654 44432
Q ss_pred ccccccccCcceeeEEEEEcCCCCeEE-EEeCCCeEEEeecC--CcceEEEEeeccceEEEEeCCCCCeeEEecCCCc-c
Q 020461 181 LKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDAR--TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-S 256 (326)
Q Consensus 181 ~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~ 256 (326)
..+. +...+..++|+|++++|+ +++.|+.+++|+++ +++..........+..++|+|+++.+++++..+. .
T Consensus 123 -~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 197 (297)
T 2ojh_A 123 -RLMT----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQM 197 (297)
T ss_dssp -EECC----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred -EEee----cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCc
Confidence 2221 223488899999999887 78889999999854 4444322234457899999999998877654332 2
Q ss_pred eeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC-----------CcEEEeecCCC
Q 020461 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED-----------GYVRLHHFDPD 320 (326)
Q Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D-----------g~i~l~~~~~~ 320 (326)
.+. .++. .......+..|...+..++|+|||++|++++.+ +.|.+|+++..
T Consensus 198 ~i~------------~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 198 QIW------------RVRV-DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp EEE------------EEET-TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred cEE------------EECC-CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 121 1111 112233455677789999999999999988876 56888887653
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=1.2e-19 Score=154.86 Aligned_cols=262 Identities=12% Similarity=0.117 Sum_probs=163.8
Q ss_pred cCCceeEEEEccCCCEEEeecCC----CCeEEEecCC--CCe--eeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEE
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKD----HTPTVWFADN--GER--LGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW 79 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d----~~v~iw~~~~--~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~w 79 (326)
+...+..++|+|||++|++++.+ +.|.+|++.. ++. +.....+......+++ ++++|++++ .+++|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999998886 7999998765 432 3344445556667777 788777776 67899999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
++.....+... .......+ ....+ .+.+...+.+++|+|+++
T Consensus 126 ~~~~~g~~~~~------~~~~~~~g----------------------~~~~~----------~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 126 PIGQDGALLPA------SDVIEFKG----------------------SGPDK----------ERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EBCTTSCBCSC------SEEEECCC----------------------CCSCT----------TTCSSCCEEEEEECTTSS
T ss_pred EeCCCCcCccc------ceeEEccC----------------------CCCCc----------cccCCCcceEEEECCCCC
Confidence 98754321000 00000000 00000 011233467899999999
Q ss_pred EEEE-eeCCCcEEEEECCCCcc------ccc----cccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcce--
Q 020461 160 TIIS-AGEDAIVRIWDTETGKL------LKE----SDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL-- 225 (326)
Q Consensus 160 ~l~s-~~~d~~i~~wd~~~~~~------~~~----~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~-- 225 (326)
+++. ...++.|.+|++..... +.. ......+...+..++|+|||+++++++ .++.|.+||+++++.
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence 6654 45588999999865431 110 011122345578899999999887777 689999999987654
Q ss_pred EEEEee----ccceEEEEeCCCCCeeEEecCCCcceeEeecc--cCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461 226 IKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH--RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (326)
Q Consensus 226 ~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d 299 (326)
+..+.. ......++++|+++.++++...+...+..++. ..+.. ..+..+.. ...+..++|+||
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~----------~~~~~~~~-g~~~~~~~~spd 316 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL----------TKVGYQLT-GIHPRNFIITPN 316 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE----------EEEEEEEC-SSCCCEEEECTT
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE----------EEeeEecC-CCCCceEEECCC
Confidence 222221 12356899999999887765431122222222 11111 11111222 346789999999
Q ss_pred CceEEeec-CCCcEEEeecCCCc
Q 020461 300 GKSFSSGG-EDGYVRLHHFDPDY 321 (326)
Q Consensus 300 ~~~lat~s-~Dg~i~l~~~~~~~ 321 (326)
|++|++++ .++.|++|.++.+.
T Consensus 317 g~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 317 GKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp SCEEEEEETTTTEEEEEEECTTT
T ss_pred CCEEEEEECCCCCEEEEEEECCC
Confidence 99887777 67999999988643
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=2.1e-20 Score=173.54 Aligned_cols=280 Identities=14% Similarity=0.151 Sum_probs=175.1
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCee-eeccCcc-----------------cceEEEEEcCCCCeEEEEeCCC
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHN-----------------GAVWCCDVSRDSMTLITGSADQ 74 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-~~~~~h~-----------------~~V~~~~~~~~~~~l~s~~~d~ 74 (326)
+..+.|+ |+.+++++.|+ | +||..+++.+ ..+..|. ..|.+++|+|| +.++.+ .++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 3446777 66777788888 8 9999999873 4444433 46999999999 555544 459
Q ss_pred cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc-------
Q 020461 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG------- 147 (326)
Q Consensus 75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 147 (326)
+|++||+.+++..........+..+.|+++++.++...+. .+.++.+... ....++.......+..
T Consensus 102 ~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~------~i~v~~~~~~-~~~~g~~~~~~~~~~~~~~~g~~ 174 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNH------NLYIARGGKL-GEGMSRAIAVTIDGTETLVYGQA 174 (706)
T ss_dssp EEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETT------EEEEEECBCT-TSCCCCCEESCSCCBTTEEESSC
T ss_pred EEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECC------eEEEEecCcc-cccCCCcEEeccCCCCCeEcccc
Confidence 9999999998776655555667778899877655554332 2333333210 0000122222222222
Q ss_pred -------ceeEEEEecCCcEEEEee---------------------------------CCCcEEEEECCCCccccccccc
Q 020461 148 -------RINRAVWGPLNRTIISAG---------------------------------EDAIVRIWDTETGKLLKESDKE 187 (326)
Q Consensus 148 -------~i~~~~~~~~~~~l~s~~---------------------------------~d~~i~~wd~~~~~~~~~~~~~ 187 (326)
.+..+.|+|+++.|++++ .+..|.+||+.+++..... ..
T Consensus 175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~-~~ 253 (706)
T 2z3z_A 175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ-TG 253 (706)
T ss_dssp CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC-CC
T ss_pred hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec-cC
Confidence 257899999999999887 4567999999887654322 22
Q ss_pred cCcceeeEEEEEcCCCCeEEEEeCCC-----eEEEeecCCcceEEEEee---cc---ceEEEEeCC--CCCeeEEecCCC
Q 020461 188 TGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLELIKTYVT---ER---PVNAVTMSP--LLDHVVLGGGQD 254 (326)
Q Consensus 188 ~~h~~~v~~v~~s~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~---~~---~~~~~~~s~--~~~~~~~~~~~~ 254 (326)
..|...+.+++|+|||+.|++++.|+ .|++||+.+++....+.. .. .+..++|+| +++.++++...+
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 35677899999999999999988776 899999999844444321 11 235689999 887655443322
Q ss_pred cceeEeecccCceeeeEeecccceeeeccccccCcceeE-EEECCCCceEEeecC-CC--cEEEeecCC
Q 020461 255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA-LAFNPDGKSFSSGGE-DG--YVRLHHFDP 319 (326)
Q Consensus 255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s~d~~~lat~s~-Dg--~i~l~~~~~ 319 (326)
... +..++. ....+..+..|...+.. ++|+|||+.|+.++. ++ .++||.++.
T Consensus 334 ~~~------------l~~~~~-~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 334 WNH------------LYLYDT-TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp SCE------------EEEEET-TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred ccE------------EEEEEC-CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence 222 222221 12223344566677876 899999998765554 44 466666654
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=1.5e-20 Score=159.35 Aligned_cols=239 Identities=12% Similarity=0.021 Sum_probs=162.1
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEE-EEeCCCcEEEEEccCCcEEEEEec
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
.+++++++.++++++.+++|++||..+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 34678889999999999999999999998887776543 2577899999998654 555789999999988766543321
Q ss_pred CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC-----
Q 020461 93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED----- 167 (326)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----- 167 (326)
.... . .....+..++|+|+++++++++.+
T Consensus 84 ~~~~---------------------------------------~-------~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 84 SSVP---------------------------------------G-------EVGRSMYSFAISPDGKEVYATVNPTQRLN 117 (349)
T ss_dssp CCST---------------------------------------T-------EEEECSSCEEECTTSSEEEEEEEEEEECS
T ss_pred cccc---------------------------------------c-------cccccccceEECCCCCEEEEEcccccccc
Confidence 1000 0 001124567899999999888765
Q ss_pred -------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-------
Q 020461 168 -------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER------- 233 (326)
Q Consensus 168 -------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------- 233 (326)
+.|.+||+.+++........ .+...+.+++++|+|+ +++++. .|++||.++++.+..+....
T Consensus 118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~ 193 (349)
T 1jmx_B 118 DHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYS 193 (349)
T ss_dssp SCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBC
T ss_pred cccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCcccc
Confidence 89999999876543322211 2334588899999999 666544 49999999988777654321
Q ss_pred ------------------c--------------------------------------------eEEEEeCC-CCCeeEEe
Q 020461 234 ------------------P--------------------------------------------VNAVTMSP-LLDHVVLG 250 (326)
Q Consensus 234 ------------------~--------------------------------------------~~~~~~s~-~~~~~~~~ 250 (326)
. +..++++| +++.++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~ 273 (349)
T 1jmx_B 194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 273 (349)
T ss_dssp CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE
T ss_pred CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE
Confidence 1 22333445 55544443
Q ss_pred cCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
. ..+.+|+....+.+..+. ....+..++|+|||++|++++.++.|++|+.+..
T Consensus 274 --~--------------~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 274 --L--------------NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp --E--------------SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred --c--------------CeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 1 123445544333333222 2235789999999999988999999999998754
No 149
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.7e-20 Score=157.36 Aligned_cols=233 Identities=13% Similarity=0.142 Sum_probs=152.7
Q ss_pred EEEeecCCCCeEEEecC-CCCe-eeeccCcccceEEEEEcCCCCeEEEEeCC-CcEEEEEcc--CCcEEEEEecCCCcce
Q 020461 24 LLFSCAKDHTPTVWFAD-NGER-LGTYRGHNGAVWCCDVSRDSMTLITGSAD-QTAKLWNVE--TGAQLFTFNFDSPARS 98 (326)
Q Consensus 24 ~l~s~~~d~~v~iw~~~-~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-~~i~~wd~~--~~~~~~~~~~~~~~~~ 98 (326)
++++++.|+.|++|++. +++. ......|...+.+++|+|++++|++++.+ +.|++|++. +++....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~--------- 77 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA--------- 77 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE---------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec---------
Confidence 45555889999999985 3432 12223467788999999999999888876 999999987 3332110
Q ss_pred eeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcEEEEECCC
Q 020461 99 VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTET 177 (326)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~~wd~~~ 177 (326)
..+..+ ..+..++|+|+++.+++++ .++.|.+||+.+
T Consensus 78 -----------------------------------------~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~ 115 (343)
T 1ri6_A 78 -----------------------------------------AESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLED 115 (343)
T ss_dssp -----------------------------------------EEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred -----------------------------------------cccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCC
Confidence 001111 1456788999999776655 488999999943
Q ss_pred C---ccccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCC-cceEE----EEe--eccceEEEEeCCCCCe
Q 020461 178 G---KLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART-LELIK----TYV--TERPVNAVTMSPLLDH 246 (326)
Q Consensus 178 ~---~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~-~~~~~----~~~--~~~~~~~~~~s~~~~~ 246 (326)
+ +....+ .....+.+++++|++.++++++ .++.|++||+.+ ++... ... ....+..++++|+++.
T Consensus 116 ~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 116 GLPVGVVDVV----EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp TEEEEEEEEE----CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred Cccccccccc----cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence 2 222222 1223588899999999888887 899999999987 54432 121 2346788999999998
Q ss_pred eEEecCCCcceeEeeccc--CceeeeEeecccceeeecccc-c--cCcceeEEEECCCCceEE-eecCCCcEEEeecCC
Q 020461 247 VVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVK-G--HFGPINALAFNPDGKSFS-SGGEDGYVRLHHFDP 319 (326)
Q Consensus 247 ~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~-~--h~~~v~~v~~s~d~~~la-t~s~Dg~i~l~~~~~ 319 (326)
++++...+. .+..+|.. .+.... ...+..+. + ....+..++|+|||++|+ ++..|+.|++|++++
T Consensus 192 l~~~~~~~~-~i~~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 192 AYCVNELNS-SVDVWELKDPHGNIEC-------VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EEEEETTTT-EEEEEESSCTTSCCEE-------EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEeCCCC-EEEEEEecCCCCcEEE-------EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 776653332 23333332 122110 00111111 1 123567899999998776 566899999999984
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=9.9e-20 Score=153.48 Aligned_cols=268 Identities=12% Similarity=0.049 Sum_probs=178.1
Q ss_pred CEEEeecCCCCeEEEecCCCCeeeeccCccc--ceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEEEEecCC-----
Q 020461 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNG--AVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDS----- 94 (326)
Q Consensus 23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~--~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~----- 94 (326)
++|++++.+++|++||..+++.+..+..... .+..++|+|+++++ ++++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988877763322 47889999999865 555668899999999998877666543
Q ss_pred -CcceeeeecCCeEEEEEcCcc-----ce--eceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461 95 -PARSVDFAVGDKLAVITTDPF-----ME--LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (326)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 166 (326)
....+.+++++..+++..... .. ....+.+++.. .++....+.. ...+..+.|+|++++++++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE------TLSRRKAFEA-PRQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT------TTEEEEEEEC-CSSCCCEEECTTSSCEEEE--
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC------CCcEEEEEeC-CCCcceeEECCCCCEEEEe--
Confidence 456677887665444432100 00 11233333321 2233333333 3457788999999988777
Q ss_pred CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC------------------------eEEEeecCC
Q 020461 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------------------------SAKLWDART 222 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg------------------------~i~iwd~~~ 222 (326)
++.|.+||+.+++....+... .+.. .+.++|++..++..+.++ .|.+||+++
T Consensus 153 ~~~i~~~d~~~~~~~~~~~~~-~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDKPIQ-SWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp SSSEEEEETTTTEEEEEECST-TTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred CCeEEEEECCCCcEeeeeecc-ccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 688999999988765543321 1111 236788888766554332 468999999
Q ss_pred cceEEEEe---eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461 223 LELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (326)
Q Consensus 223 ~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d 299 (326)
++.. ... ....+..++++|+++.++++ . ..+. +|+....+.+..+.. ...+.+++|+||
T Consensus 229 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~--~~v~------------~~d~~~~~~~~~~~~-~~~~~~~~~s~d 290 (337)
T 1pby_B 229 GEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--Y--NVLE------------SFDLEKNASIKRVPL-PHSYYSVNVSTD 290 (337)
T ss_dssp CCEE-EEEEEECSSCEEEEEECTTSSEEEEE--E--SEEE------------EEETTTTEEEEEEEC-SSCCCEEEECTT
T ss_pred CCce-EeecCCCCCceeeEEECCCCCEEEEe--C--CeEE------------EEECCCCcCcceecC-CCceeeEEECCC
Confidence 8775 322 22357789999999888776 1 2233 333333222222222 245789999999
Q ss_pred CceEEeecCCCcEEEeecCCCc
Q 020461 300 GKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 300 ~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
|++|++++.|+.|++|+....-
T Consensus 291 g~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 291 GSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp SCEEEEESBSSEEEEEETTTCC
T ss_pred CCEEEEEcCCCcEEEEECcCCc
Confidence 9999999999999999987543
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=2.9e-19 Score=150.57 Aligned_cols=236 Identities=10% Similarity=0.036 Sum_probs=161.6
Q ss_pred eecCCceeEEEEccCCCEEEeecC-CCCeEEEecCCCCe-eeeccCcccceEEEEEcCCCCeEEEEeCCC---cEEEEEc
Q 020461 7 KGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQ---TAKLWNV 81 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~~~~l~s~~~-d~~v~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~---~i~~wd~ 81 (326)
..+...+ +++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++ .|++||+
T Consensus 37 ~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~ 115 (331)
T 3u4y_A 37 TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF 115 (331)
T ss_dssp ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence 3445556 9999999996665554 89999999999987 777777777777799999999998555553 8999999
Q ss_pred cCCcEEEEEecCCCcceeeeecCCe-EEEEEcCccceecee-eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
.+++.+..+........+.++++++ +.+..... .. +.++.+.......... ...+ ........++|+|+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~spdg~ 188 (331)
T 3u4y_A 116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS-----ANTVRRFKIDADGVLFDTG-QEFI-SGGTRPFNITFTPDGN 188 (331)
T ss_dssp TTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT-----TTEEEEEEECTTCCEEEEE-EEEE-CSSSSEEEEEECTTSS
T ss_pred CCCCeEEEEECCCCccceEECCCCCEEEEEecCC-----CceEEEEEECCCCcEeecC-Cccc-cCCCCccceEECCCCC
Confidence 9998887776665667788888765 43333221 11 2333332110000000 1111 2334578899999998
Q ss_pred EEE-EeeCCCcEEEEECCCCcc---ccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcce--EEEEeec
Q 020461 160 TII-SAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL--IKTYVTE 232 (326)
Q Consensus 160 ~l~-s~~~d~~i~~wd~~~~~~---~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~--~~~~~~~ 232 (326)
+++ ++..++.|.+||+.+++. +..+. ....+..++++|+|++++.++ .++.|.+||+++++. +..+...
T Consensus 189 ~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~ 264 (331)
T 3u4y_A 189 FAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG 264 (331)
T ss_dssp EEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc
Confidence 654 555789999999998876 44332 235678899999999776554 578899999998877 4433221
Q ss_pred -----c---ceEEEEeCCCCCeeEEecCCC
Q 020461 233 -----R---PVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 233 -----~---~~~~~~~s~~~~~~~~~~~~~ 254 (326)
. ..+.++|+|+++.++++...+
T Consensus 265 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 265 LLIDPRPLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp CCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred cccCCCCcccccceEECCCCCEEEEecCCC
Confidence 1 124589999999887765443
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=6.5e-21 Score=177.30 Aligned_cols=280 Identities=11% Similarity=0.042 Sum_probs=181.5
Q ss_pred eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc---ceEEEEEcCCCCeEEEEeC---------CCcEEEEEc
Q 020461 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSA---------DQTAKLWNV 81 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~~~---------d~~i~~wd~ 81 (326)
..++|+|||++++++ .|++|++|+..+++....+.+|.. .|.+++|||||++|+.++. +++|++||+
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 467999999766654 699999999999998777766654 3899999999999998876 789999999
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE---------EeccCccc----
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL---------ILKGPQGR---- 148 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~---- 148 (326)
.+++.+........+..+.|+|+++.++...+. .+.++.+.. +.... .+.|+...
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~------~i~~~~~~~------g~~~~l~~~~~~~~v~~g~~~~v~~e 165 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQN------NIYLKQRPG------DPPFQITFNGRENKIFNGIPDWVYEE 165 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEEETT------EEEEESSTT------SCCEECCCCCBTTTEEESSCCHHHHH
T ss_pred CCCccccceecCcccccceECCCCCEEEEEECC------eEEEEeCCC------CCcEEEecCCCcCCeEcccccceeee
Confidence 988752111223456677888877655544332 233333211 11111 11222222
Q ss_pred -----eeEEEEecCCcEEEEeeCCC----------------------------------cEEEEECCCCccc--ccc---
Q 020461 149 -----INRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLL--KES--- 184 (326)
Q Consensus 149 -----i~~~~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~--~~~--- 184 (326)
...+.|+|+|+.|++++.|. .|++||+.+++.. ..+
T Consensus 166 e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 166 EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred ecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence 24799999999999887653 7889999887642 111
Q ss_pred ccccCcceeeEEEEEcCCCCeEEEEeCC----CeEEEee----cCCcceEEEEe-----eccceE-----EEEeCCCCCe
Q 020461 185 DKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLWD----ARTLELIKTYV-----TERPVN-----AVTMSPLLDH 246 (326)
Q Consensus 185 ~~~~~h~~~v~~v~~s~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~~-----~~~~~~-----~~~~s~~~~~ 246 (326)
....+|...+..++|+||+..+++.... ..|.+|| ..++++..... +...+. .+.|+|+++.
T Consensus 246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCe
Confidence 1123578889999999998777764432 2488899 87776544331 223344 7889999987
Q ss_pred eEEe-cCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC-----CcEEEeecCC
Q 020461 247 VVLG-GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED-----GYVRLHHFDP 319 (326)
Q Consensus 247 ~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D-----g~i~l~~~~~ 319 (326)
++.. ...++ ...++.|+...++ ...+..+...+..+.++ +++.++..+.+ +.++||.++.
T Consensus 326 l~~~~~~~~g-----------~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 326 YYKIFSDKDG-----------YKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEEECTTS-----------CEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEEEccCC-----------ceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 6552 22221 1234444433222 12234455567787777 77776655554 8899998865
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=1.2e-19 Score=168.80 Aligned_cols=282 Identities=10% Similarity=0.055 Sum_probs=174.2
Q ss_pred eeeecCC---ceeEEEEccCCCEEEeecCC---------CCeEEEecCCCCe--eeeccCcccceEEEEEcCCCCeEEEE
Q 020461 5 LMKGHER---PLTYLKYNKDGDLLFSCAKD---------HTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITG 70 (326)
Q Consensus 5 ~~~~h~~---~i~~~~~s~~~~~l~s~~~d---------~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~ 70 (326)
++.+|.. .+.+++|||||++|++++.+ +.+++||+.+++. +....+|...+..++|||||+.|+.+
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~ 131 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI 131 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEE
Confidence 4445554 38999999999999998875 6777999998876 22334566668999999999999988
Q ss_pred eCCCcEEEEEccCCcEEEEEec-CCCc------------------ceeeeecCCeEEEEEc-Cc-ccee-----------
Q 020461 71 SADQTAKLWNVETGAQLFTFNF-DSPA------------------RSVDFAVGDKLAVITT-DP-FMEL----------- 118 (326)
Q Consensus 71 ~~d~~i~~wd~~~~~~~~~~~~-~~~~------------------~~~~~~~~~~~~~~~~-~~-~~~~----------- 118 (326)
+. +.|++||+.+++....... ...+ ..+.|+++++.++... +. ....
T Consensus 132 ~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 210 (723)
T 1xfd_A 132 FE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY 210 (723)
T ss_dssp ET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred EC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCC
Confidence 86 7899999998876654432 1112 4678888776554432 21 0000
Q ss_pred ----------------ceeeeeeeeccCCCCCCCceEEEeccC------ccceeEEEEecCCcEEEEeeC----CCcEEE
Q 020461 119 ----------------NSAIHVKRIARDPADQGGESVLILKGP------QGRINRAVWGPLNRTIISAGE----DAIVRI 172 (326)
Q Consensus 119 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~~~----d~~i~~ 172 (326)
...+.++++. ++.....+..+ ...+..+.|+|+++.+++... +..|.+
T Consensus 211 ~~~~~~~~~~~G~~~~~~~l~~~d~~------~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 211 PTVKPYHYPKAGSENPSISLHVIGLN------GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp CCCEEEECCBTTSCCCEEEEEEEESS------SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred CcceeccCCCCCCCCCeeEEEEEECC------CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence 0012222211 12222333332 567889999999998876643 357999
Q ss_pred EECCCCccccccccccCcceee----EEEEEcCCCCeEEE--EeCCC------eEEEee-cCCcc--eEEEEee-ccceE
Q 020461 173 WDTETGKLLKESDKETGHKKTI----TSLAKAADGSHFLT--GSLDK------SAKLWD-ARTLE--LIKTYVT-ERPVN 236 (326)
Q Consensus 173 wd~~~~~~~~~~~~~~~h~~~v----~~v~~s~~~~~l~s--~s~dg------~i~iwd-~~~~~--~~~~~~~-~~~~~ 236 (326)
||+.+++....... .+...+ ..++|+|||+.|+. +..++ .|.+|| ..+++ +...+.. ...+.
T Consensus 285 ~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 362 (723)
T 1xfd_A 285 CDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (723)
T ss_dssp EETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred EeCCCCcceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE
Confidence 99998875443221 122222 37899999998775 45667 577777 34444 1344432 22343
Q ss_pred -EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc--ceeeeccccc---cCcceeEEEECCCCceEEee
Q 020461 237 -AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI--LQEEIGGVKG---HFGPINALAFNPDGKSFSSG 306 (326)
Q Consensus 237 -~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~---h~~~v~~v~~s~d~~~lat~ 306 (326)
.++|+|+++.++..+..+.. + ..++|... .......+.. |...+..++|||||++|+..
T Consensus 363 ~~~~~spdg~~l~~~~~~~~~---------~--~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 363 KILAYDEKGNKIYFLSTEDLP---------R--RRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEEEETTTTEEEEEESSSCT---------T--CCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred eeeEEcCCCCEEEEEEcCCCC---------c--ceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 46899999988766544310 0 11222211 1111112222 56778999999999987654
No 154
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=2.4e-19 Score=154.44 Aligned_cols=302 Identities=12% Similarity=0.000 Sum_probs=179.5
Q ss_pred eeeeecCCceeE-----EEEccCCCEEEeecC-CCC--eEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCc
Q 020461 4 ILMKGHERPLTY-----LKYNKDGDLLFSCAK-DHT--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75 (326)
Q Consensus 4 ~~~~~h~~~i~~-----~~~s~~~~~l~s~~~-d~~--v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~ 75 (326)
+.+..|...... .+|||||++|+.++. ++. |.+|++.+++......++...+..+.|+||++.|+.++.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence 445556554444 789999999988887 664 777799898887777777777767889999999999999999
Q ss_pred EEEEEccCCcEEEEEecCCCcc-eee--eecCCeEEEEEc-Ccc----------------ceeceeeeeeeeccCCCCCC
Q 020461 76 AKLWNVETGAQLFTFNFDSPAR-SVD--FAVGDKLAVITT-DPF----------------MELNSAIHVKRIARDPADQG 135 (326)
Q Consensus 76 i~~wd~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~ 135 (326)
|.+||+.+++.......+.... ... +.++...++... ... ......+..+.+ .+
T Consensus 104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~------~~ 177 (388)
T 3pe7_A 104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL------KT 177 (388)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET------TT
T ss_pred EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC------CC
Confidence 9999999988766555433211 122 234443333211 000 000011222211 11
Q ss_pred CceEEEeccCccceeEEEEec-CCcEEEEeeCC------CcEEEEECCCCccccccccccCc-ceeeEEEEEcCCCCeEE
Q 020461 136 GESVLILKGPQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFL 207 (326)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l~ 207 (326)
++ ...+..+...+..+.|+| +++.|+....+ ..|.++|...++.. .+.. .+ ...+....|+|||+.|+
T Consensus 178 g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~--~~~~~~~~~~~~spdg~~l~ 253 (388)
T 3pe7_A 178 GE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKT--HAEGESCTHEFWVPDGSALV 253 (388)
T ss_dssp CC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCC--CCTTEEEEEEEECTTSSCEE
T ss_pred Cc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eeee--CCCCcccccceECCCCCEEE
Confidence 22 233334556788999999 99988776653 36888887655432 2221 11 14577889999999886
Q ss_pred EEeCC-----CeEEEeecCCcceEEEEeeccc------eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc
Q 020461 208 TGSLD-----KSAKLWDARTLELIKTYVTERP------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 276 (326)
Q Consensus 208 s~s~d-----g~i~iwd~~~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 276 (326)
..+.+ ..|++||+.+++...-...... .....|+|+++.++.....+... ...+...+++|+..
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~-----~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 254 YVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY-----KIENDPFLYVFNMK 328 (388)
T ss_dssp EEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------------CCCCEEEEEETT
T ss_pred EEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc-----ccCCCCEEEEEecc
Confidence 65432 2399999998875332221110 12236788887776543210000 00011234444433
Q ss_pred ceeeeccccccCc-----------ceeEEEECCCCceEEeec-CCCcEEEeecCCCc
Q 020461 277 LQEEIGGVKGHFG-----------PINALAFNPDGKSFSSGG-EDGYVRLHHFDPDY 321 (326)
Q Consensus 277 ~~~~~~~~~~h~~-----------~v~~v~~s~d~~~lat~s-~Dg~i~l~~~~~~~ 321 (326)
.++. ..+..|.. .+..++|+|||+.|+..+ .+|...||.++-..
T Consensus 329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 329 NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred CCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 3221 22333433 578899999999877655 58899998877543
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=4.8e-19 Score=151.50 Aligned_cols=254 Identities=9% Similarity=0.101 Sum_probs=163.7
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecC-CCCeeeeccCc-ccceEEEEEcCCCCe--EEEEe-------------C
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRGH-NGAVWCCDVSRDSMT--LITGS-------------A 72 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~-~~~~~~~~~~h-~~~V~~~~~~~~~~~--l~s~~-------------~ 72 (326)
...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+..++|+|++++ +++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 3467899999999999998888 99999987 77665432211 123556889999994 55653 6
Q ss_pred CCcEEEEEccC-CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461 73 DQTAKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (326)
Q Consensus 73 d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (326)
++++++|++.. ++....... . ...+...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~----------------------------------~--------------~~~~~~~~~~ 149 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQN----------------------------------Y--------------EYQENTGIHG 149 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEE----------------------------------E--------------ECCTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEee----------------------------------E--------------EeCCCCcceE
Confidence 88999999863 432211100 0 0012345778
Q ss_pred EEEecCCcEEEEee-CCCcEEEEECC-CCccccccccc-cCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecC--Ccce
Q 020461 152 AVWGPLNRTIISAG-EDAIVRIWDTE-TGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDAR--TLEL 225 (326)
Q Consensus 152 ~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~--~~~~ 225 (326)
++|+|++++++++. .++.|++||+. +++........ ..|...+..++|+|||+++++++. +++|.+|++. +++.
T Consensus 150 ~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 89999999887665 46899999998 66543211111 123456889999999999988775 7899999765 5554
Q ss_pred EE---EEee---c----c-------ceEEEE-eCCCCCeeEEecCCCc----ceeEeeccc-CceeeeEeecccceeeec
Q 020461 226 IK---TYVT---E----R-------PVNAVT-MSPLLDHVVLGGGQDA----SAVTTTDHR-AGKFEAKFFDKILQEEIG 282 (326)
Q Consensus 226 ~~---~~~~---~----~-------~~~~~~-~s~~~~~~~~~~~~~~----~~~~~~d~~-~~~~~~~~~~~~~~~~~~ 282 (326)
.. .+.. . . .+..++ ++|+++.++++..... ..+..++.. .+... .+.
T Consensus 230 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~----------~~~ 299 (365)
T 1jof_A 230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE----------KQL 299 (365)
T ss_dssp EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE----------EEE
T ss_pred EEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE----------Eee
Confidence 32 2211 1 1 477899 9999998876543221 022233221 11110 000
Q ss_pred -cccccCcceeEEEECC---CCceEEeecCC-CcEEEeecCCCce
Q 020461 283 -GVKGHFGPINALAFNP---DGKSFSSGGED-GYVRLHHFDPDYF 322 (326)
Q Consensus 283 -~~~~h~~~v~~v~~s~---d~~~lat~s~D-g~i~l~~~~~~~~ 322 (326)
....+...+..++|+| ||++|++++.+ ++|++|+++.+.+
T Consensus 300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 0122334567899999 89999988875 9999999988744
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=6.7e-18 Score=143.27 Aligned_cols=226 Identities=12% Similarity=0.030 Sum_probs=165.1
Q ss_pred CceeEEEEccCCCE-EEeecCCCCeEEEecCCCCeeeeccCcccc---------eEEEEEcCCCCeEEEEe--CCCcEEE
Q 020461 11 RPLTYLKYNKDGDL-LFSCAKDHTPTVWFADNGERLGTYRGHNGA---------VWCCDVSRDSMTLITGS--ADQTAKL 78 (326)
Q Consensus 11 ~~i~~~~~s~~~~~-l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~---------V~~~~~~~~~~~l~s~~--~d~~i~~ 78 (326)
..+..++|+|+|++ +++...++.|.+||.++++.+..+..+... +..++|+|+++++++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 34678999999995 555666899999999999988877665432 68899999999877766 4788999
Q ss_pred EEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec----cCccceeEEE
Q 020461 79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----GPQGRINRAV 153 (326)
Q Consensus 79 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~ 153 (326)
||+.+++.+..+. .......+.+++++..+++... ...+..++.. .++....+. ++...+..++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~i~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~ 237 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-----DGELITIDTA------DNKILSRKKLLDDGKEHFFINIS 237 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-----TSEEEEEETT------TTEEEEEEECCCSSSCCCEEEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-----CCeEEEEECC------CCeEEEEEEcCCCCCCcccceEE
Confidence 9999998887776 3344667778876654444332 1122222221 223333333 2455677899
Q ss_pred EecCCcEEEEee-CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcceEEEEee
Q 020461 154 WGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT 231 (326)
Q Consensus 154 ~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~ 231 (326)
|+|+++.++.++ .++.|.+||+.+++....+.. +. ...++++|++++++.++ .++.|.+||..+++.+..+..
T Consensus 238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 238 LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT 312 (353)
T ss_dssp EETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence 999999776555 459999999998887665432 21 25789999999666555 699999999999999988877
Q ss_pred ccceEEEEeCCCCCeeEEecC
Q 020461 232 ERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 232 ~~~~~~~~~s~~~~~~~~~~~ 252 (326)
...+..++++|+++.++++..
T Consensus 313 ~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 313 PTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp CSEEEEEEECTTSCEEEEEEE
T ss_pred CCCCCeEEEcCCCCEEEEEEc
Confidence 778899999999998877644
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=1.7e-18 Score=145.86 Aligned_cols=223 Identities=16% Similarity=0.048 Sum_probs=157.8
Q ss_pred ceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccC-c----ccceEEEEEcCCCCeEEEEe------------CC
Q 020461 12 PLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRG-H----NGAVWCCDVSRDSMTLITGS------------AD 73 (326)
Q Consensus 12 ~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~-h----~~~V~~~~~~~~~~~l~s~~------------~d 73 (326)
.+..++|+|+++++ ++++.++.|.+||+.+++.+..+.. + ...+..++|+|+++++++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 47889999999765 5666789999999999988776653 2 23577899999999988886 57
Q ss_pred CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461 74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (326)
Q Consensus 74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (326)
+.|.+||+.+++....+........+.+++++..+++... .+.++++. .++....+..+.. .....
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------~i~~~d~~------~~~~~~~~~~~~~-~~~~~ 180 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR-------DLHVMDPE------AGTLVEDKPIQSW-EAETY 180 (337)
T ss_dssp CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS-------SEEEEETT------TTEEEEEECSTTT-TTTTB
T ss_pred ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCC-------eEEEEECC------CCcEeeeeecccc-CCCce
Confidence 9999999999887777665555667778877664444321 22222221 1223333332220 01226
Q ss_pred EecCCcEEEEeeC-CC-----------------------cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE
Q 020461 154 WGPLNRTIISAGE-DA-----------------------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209 (326)
Q Consensus 154 ~~~~~~~l~s~~~-d~-----------------------~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 209 (326)
|+|++..++..+. ++ .|.+||+.+++.. ... ...+...+.+++++|++.+++++
T Consensus 181 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~-~~~~~~~~~~~~~s~dg~~l~~~ 258 (337)
T 1pby_B 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE-VRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE-EEECSSCEEEEEECTTSSEEEEE
T ss_pred eCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee-cCCCCCceeeEEECCCCCEEEEe
Confidence 7888776554332 22 4689999888764 221 22355567889999999999988
Q ss_pred eCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461 210 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 210 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
++.|++||+++++.+..+.....+.+++++|+++.+++++.
T Consensus 259 --~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 299 (337)
T 1pby_B 259 --YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA 299 (337)
T ss_dssp --ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB
T ss_pred --CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcC
Confidence 79999999999998888877677889999999998887643
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=5.8e-19 Score=164.61 Aligned_cols=240 Identities=12% Similarity=0.085 Sum_probs=158.3
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccce-----EEEEEcCCCCeEEEEeCCC---------cEE
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-----WCCDVSRDSMTLITGSADQ---------TAK 77 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V-----~~~~~~~~~~~l~s~~~d~---------~i~ 77 (326)
....++|+|||++++++ |++|++|+..++++...+.+|.... ..++|||||++|+.++.++ .+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45688999999999886 8999999999999887777776432 3478899999999988874 445
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+||+.+++.. .+..+.+.+...+|||+
T Consensus 96 ~~d~~~~~~~-----------------------------------------------------~l~~~~~~~~~~~~SPd 122 (740)
T 4a5s_A 96 IYDLNKRQLI-----------------------------------------------------TEERIPNNTQWVTWSPV 122 (740)
T ss_dssp EEETTTTEEC-----------------------------------------------------CSSCCCTTEEEEEECSS
T ss_pred EEECCCCcEE-----------------------------------------------------EcccCCCcceeeEECCC
Confidence 8888776431 01223446778899999
Q ss_pred CcEEEEeeCCCcEEEEECCCCccccccccccCcce-----------------eeEEEEEcCCCCeEEEEeCCC-------
Q 020461 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-----------------TITSLAKAADGSHFLTGSLDK------- 213 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~-----------------~v~~v~~s~~~~~l~s~s~dg------- 213 (326)
|+.|+.+. |+.|.+||+.+++..+. .. .++.. ...++.|||||++|+.++.|.
T Consensus 123 G~~la~~~-~~~i~~~~~~~~~~~~l-t~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~ 199 (740)
T 4a5s_A 123 GHKLAYVW-NNDIYVKIEPNLPSYRI-TW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (740)
T ss_dssp TTCEEEEE-TTEEEEESSTTSCCEEC-CS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred CCEEEEEE-CCeEEEEECCCCceEEE-cC-CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEE
Confidence 99998874 67899999988765432 11 12221 123589999999999876432
Q ss_pred -----------------------------eEEEeecCC---cc--eEEEEe-------eccceEEEEeCCCCCeeEEecC
Q 020461 214 -----------------------------SAKLWDART---LE--LIKTYV-------TERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 214 -----------------------------~i~iwd~~~---~~--~~~~~~-------~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
+|++||+.+ ++ ....+. ....+..++|+|+++.++....
T Consensus 200 ~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~ 279 (740)
T 4a5s_A 200 YSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR 279 (740)
T ss_dssp EEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred EEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC
Confidence 488899988 73 222332 2334778899999875443221
Q ss_pred CCcceeEeecccCceeeeEeeccccee------eeccc--cccCccee-----EEEECCCCceEE-eec-CCCcEEEeec
Q 020461 253 QDASAVTTTDHRAGKFEAKFFDKILQE------EIGGV--KGHFGPIN-----ALAFNPDGKSFS-SGG-EDGYVRLHHF 317 (326)
Q Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~--~~h~~~v~-----~v~~s~d~~~la-t~s-~Dg~i~l~~~ 317 (326)
.+ .....+.+++...++ .+..+ .+|.+.|. ..+|+|||+.|+ ..+ .+|.-.||.+
T Consensus 280 r~----------~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 280 RI----------QNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp SS----------TTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CC----------CCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 11 112234444433322 11111 34656655 789999999876 555 5666666555
Q ss_pred CC
Q 020461 318 DP 319 (326)
Q Consensus 318 ~~ 319 (326)
+.
T Consensus 350 ~~ 351 (740)
T 4a5s_A 350 QI 351 (740)
T ss_dssp ET
T ss_pred EC
Confidence 43
No 159
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=9.3e-17 Score=132.44 Aligned_cols=242 Identities=12% Similarity=0.125 Sum_probs=163.1
Q ss_pred ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc------CcccceEEEEE-cCCCCeEEEEeC-CCcEEEE
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------GHNGAVWCCDV-SRDSMTLITGSA-DQTAKLW 79 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~------~h~~~V~~~~~-~~~~~~l~s~~~-d~~i~~w 79 (326)
+|...+.+++++++++++++...++.|.+|+.. ++.+..+. +|...+..+++ .++++++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 345678999999999999998899999999976 65555553 34456889999 466666655533 7889999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
| .+++.+..+.. .+...+..++++|+++
T Consensus 106 d-~~g~~~~~~~~---------------------------------------------------~~~~~~~~i~~~~~g~ 133 (286)
T 1q7f_A 106 N-QYGQFVRKFGA---------------------------------------------------TILQHPRGVTVDNKGR 133 (286)
T ss_dssp C-TTSCEEEEECT---------------------------------------------------TTCSCEEEEEECTTSC
T ss_pred C-CCCcEEEEecC---------------------------------------------------ccCCCceEEEEeCCCC
Confidence 9 44443322100 1123456788899998
Q ss_pred EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---cceE
Q 020461 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVN 236 (326)
Q Consensus 160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~ 236 (326)
.+++...++.|.+||.. ++....+.. .++...+..++++++|..+++.+.++.|++||.. ++.+..+... ..+.
T Consensus 134 l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~ 210 (286)
T 1q7f_A 134 IIVVECKVMRVIIFDQN-GNVLHKFGC-SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPI 210 (286)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEEC-TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEE
T ss_pred EEEEECCCCEEEEEcCC-CCEEEEeCC-CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCc
Confidence 88887888999999964 444433321 1334568899999999988888889999999974 5555665433 4678
Q ss_pred EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc--CcceeEEEECCCCceEEeecCCCcEEE
Q 020461 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~s~d~~~lat~s~Dg~i~l 314 (326)
.+++++++...++..+.. ..+..+|.. +. .+..+..+ ...+..++++|+|+++++ +.|++|++
T Consensus 211 ~i~~d~~G~l~v~~~~~~-~~i~~~~~~-g~------------~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v 275 (286)
T 1q7f_A 211 GVGINSNGEILIADNHNN-FNLTIFTQD-GQ------------LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYI 275 (286)
T ss_dssp EEEECTTCCEEEEECSSS-CEEEEECTT-SC------------EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEE
T ss_pred EEEECCCCCEEEEeCCCC-EEEEEECCC-CC------------EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEE
Confidence 999999886544433322 123333321 11 11111112 234779999999998887 56999999
Q ss_pred eecCCC
Q 020461 315 HHFDPD 320 (326)
Q Consensus 315 ~~~~~~ 320 (326)
|++...
T Consensus 276 ~~~~~~ 281 (286)
T 1q7f_A 276 YRYVQL 281 (286)
T ss_dssp EECSCC
T ss_pred EEcccc
Confidence 998653
No 160
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=1.3e-16 Score=134.44 Aligned_cols=258 Identities=15% Similarity=0.136 Sum_probs=175.7
Q ss_pred CCceeEEEEccCCCEEEeecCC------------------------CCeEEEecCCCCeeeecc-CcccceEEEEEcCCC
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKD------------------------HTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDS 64 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d------------------------~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~ 64 (326)
...+..++++|+|+++++.+.+ ++|.+||..+++.+..+. ++-.....+++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4568999999999999988877 479999998898876654 344578899999999
Q ss_pred CeEEEEeCCCcEEEEEccCCc-EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec
Q 020461 65 MTLITGSADQTAKLWNVETGA-QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (326)
Q Consensus 65 ~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (326)
+++++...++.|++||.+... .+..+.... ..+. -.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~---------------------------------------~~g~----~~ 139 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSM---------------------------------------QPGS----DQ 139 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTT---------------------------------------BCCC----ST
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccC---------------------------------------CCCC----Cc
Confidence 988888889999999976432 111110000 0000 01
Q ss_pred cCccceeEEEEec-CCcEEEEee-CCCcEEEEECCCCccccccccc-------cCcceeeEEEEEcCC-CCeEEEEeCCC
Q 020461 144 GPQGRINRAVWGP-LNRTIISAG-EDAIVRIWDTETGKLLKESDKE-------TGHKKTITSLAKAAD-GSHFLTGSLDK 213 (326)
Q Consensus 144 ~~~~~i~~~~~~~-~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~-------~~h~~~v~~v~~s~~-~~~l~s~s~dg 213 (326)
++......++++| ++..+++.+ .++.|++|| .+++.+..+... .++......++++++ +..+++...++
T Consensus 140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~ 218 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG 218 (329)
T ss_dssp TCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence 2334567899999 777778776 699999999 456555443211 123344789999998 77778888899
Q ss_pred eEEEeecCCcceEEEEee---ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc---ccc
Q 020461 214 SAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV---KGH 287 (326)
Q Consensus 214 ~i~iwd~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~h 287 (326)
.|++||..+++.+..+.. ...+..++++| ..++...+.. . ..+. ....+..|+...++.+..+ .++
T Consensus 219 ~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~--~--v~~~--~~~~v~~~~~~~g~~~~~~~~~~~~ 290 (329)
T 3fvz_A 219 RIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGKP--Y--FGDQ--EPVQGFVMNFSSGEIIDVFKPVRKH 290 (329)
T ss_dssp EEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECCC--C--TTCS--CCCCEEEEETTTCCEEEEECCSSSC
T ss_pred EEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCCE--E--eccC--CCcEEEEEEcCCCeEEEEEcCCCCc
Confidence 999999998988888743 24577888888 3333332211 0 0111 1112344443333333332 356
Q ss_pred CcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 288 FGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 288 ~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
......|+++|+|..+++...+++|++|+.+.
T Consensus 291 ~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 291 FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred cCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 67789999999999999999999999998764
No 161
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=2.4e-17 Score=139.84 Aligned_cols=232 Identities=11% Similarity=0.069 Sum_probs=142.8
Q ss_pred CCCCeEEEec--CCCCeee-eccCcccceEEEEEcCCCCeEEEEeC---CCcEEEEEccCCcEEEEEecCCCcceeeeec
Q 020461 30 KDHTPTVWFA--DNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAV 103 (326)
Q Consensus 30 ~d~~v~iw~~--~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 103 (326)
.++.+.+|.+ ++++... ....+...+..++|+|+++ |++++. ++.|.+||+.+++....
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-------------- 78 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-------------- 78 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE--------------
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe--------------
Confidence 4556777755 4555432 2334556678899999999 665554 68999999966543111
Q ss_pred CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcEEEEECC-CCcc-
Q 020461 104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTE-TGKL- 180 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~- 180 (326)
.....+...+..++|+|++++|++++ .++.|.+||+. +++.
T Consensus 79 ------------------------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 79 ------------------------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp ------------------------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred ------------------------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 00111233456789999999888777 78999999995 3322
Q ss_pred -ccccccccC-------cceeeEEEEEcCCCCeEEEEeCCCeEEEeecC-CcceEEE--Ee--eccceEEEEeCCCCCee
Q 020461 181 -LKESDKETG-------HKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLELIKT--YV--TERPVNAVTMSPLLDHV 247 (326)
Q Consensus 181 -~~~~~~~~~-------h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~--~~--~~~~~~~~~~s~~~~~~ 247 (326)
+..+. ..+ +...+.+++++|+|+.+++...++.|++||+. +++.... +. ....+..++|+|+++.+
T Consensus 123 ~~~~~~-~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 123 LTDTVQ-HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp EEEEEE-CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred ecceee-cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 11111 001 12347889999999966667778999999998 4543322 11 22357789999999977
Q ss_pred EEecCCCc-ceeEeecccCceeeeEeecccceeeecccc---ccCcceeEEEECCCCceE-EeecCCCcEEEeecCCC
Q 020461 248 VLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVK---GHFGPINALAFNPDGKSF-SSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 248 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~s~d~~~l-at~s~Dg~i~l~~~~~~ 320 (326)
+++...+. ..+...+...+.+... ..+.... .....+..++|+|||++| +++..++.|++|+++++
T Consensus 202 ~v~~~~~~~v~v~~~~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQTGAFTQL-------GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEE-------EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EEEeCCCCEEEEEEecCCCCceEEe-------eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 76543332 2222222212221110 0011110 011358899999999987 56667999999999743
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=2.3e-18 Score=156.38 Aligned_cols=238 Identities=11% Similarity=0.018 Sum_probs=155.0
Q ss_pred ccceEEEEEcCCCCeEEEEeC-CCcEEEEEccCCcEEEEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeecc
Q 020461 52 NGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 129 (326)
Q Consensus 52 ~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (326)
..+|++++|+|||+.|+.++. |++++||++.+++........ ..+....|+++ ++++....... .....++.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g--~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKG--AEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTT--SCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCC--CcceEEEEEec
Confidence 557999999999999999887 999999999776654433333 34566677777 55544331000 01112222211
Q ss_pred CCCCCCCceEEEeccCccceeEEEEecCCc--EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEE
Q 020461 130 DPADQGGESVLILKGPQGRINRAVWGPLNR--TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 207 (326)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~ 207 (326)
.. .+... .+... ..+....|+|+++ .+++++.++ +.+||+.+++...... +.. .++++||||++|+
T Consensus 98 ~~---~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~----~~~--~~~~~spDG~~la 165 (582)
T 3o4h_A 98 SR---PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELAR----LPG--FGFVSDIRGDLIA 165 (582)
T ss_dssp TS---TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEE----ESS--CEEEEEEETTEEE
T ss_pred cC---CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeec----CCC--ceEEECCCCCEEE
Confidence 00 01111 22211 2234568888875 344444454 5599998876543221 222 7889999999999
Q ss_pred EEeCC----CeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461 208 TGSLD----KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283 (326)
Q Consensus 208 s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (326)
+++.| +.|++||+.+++...-..+...+..++|+|+++.++.+.. ++ ...+++|+...++.. .
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~-~~-----------~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLET-AR-----------EARLVTVDPRDGSVE-D 232 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEEC-SS-----------CEEEEEECTTTCCEE-E
T ss_pred EEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccC-CC-----------eeEEEEEcCCCCcEE-E
Confidence 88887 7899999998886543334456889999999998884322 22 123455555444433 4
Q ss_pred ccccCcceeEEE--------ECCCCceEEeecCCCcEEEeec
Q 020461 284 VKGHFGPINALA--------FNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 284 ~~~h~~~v~~v~--------~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+.+|...+..++ |+|||..+++++.||+++||.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 566777777777 9999988999999999999987
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=1.1e-17 Score=144.26 Aligned_cols=290 Identities=13% Similarity=0.082 Sum_probs=166.4
Q ss_pred eeEEEEccCCCEEEeecCC---CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 13 LTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
+..++|||||++|+..... ..+.+|++.+++......++......+.|+||+++|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 6778999999998766543 3677789888876544444333344478999999999999999999999998876555
Q ss_pred EecCCCcceeeeecCCeEEEEEc----------------Cc-cc--------eeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 90 FNFDSPARSVDFAVGDKLAVITT----------------DP-FM--------ELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
...+.. +.+....++... +. .+ .....+..+.+ .+++.. .+..
T Consensus 118 ~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~------~~g~~~-~~~~ 185 (396)
T 3c5m_A 118 YTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI------ETGELE-VIHQ 185 (396)
T ss_dssp EECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET------TTCCEE-EEEE
T ss_pred Eecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC------CCCcEE-eecc
Confidence 443221 111111111100 00 00 00011111111 112222 2224
Q ss_pred CccceeEEEEec-CCcEEEEeeCC------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----
Q 020461 145 PQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD----- 212 (326)
Q Consensus 145 ~~~~i~~~~~~~-~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d----- 212 (326)
+...+..+.|+| ++..|+..+.+ ..|.+||+..++.. .+.. ......+..+.|+|||++|+.++.+
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eeec-cCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 556788899999 78767665543 46888888765432 2221 1113467889999999988877654
Q ss_pred CeEEEeecCCcceEEEEeeccceEEEEeCC-CCCeeEEecCCCcceeEeec----ccCceeeeEeecccceeeecccccc
Q 020461 213 KSAKLWDARTLELIKTYVTERPVNAVTMSP-LLDHVVLGGGQDASAVTTTD----HRAGKFEAKFFDKILQEEIGGVKGH 287 (326)
Q Consensus 213 g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~~~~~~~~~~~~~~h 287 (326)
+.|++||+.+++.......+ ... ..++| ++..++.+..... +...+ ...+...+++|+...++. ..+..|
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p--~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~ 338 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAP--VDVADADSYNIENDPFLYVLNTKAKSA-QKLCKH 338 (396)
T ss_dssp EEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC------------CCCCCCEEEEEETTTTBC-CEEEEC
T ss_pred ceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcc--eeeccccccccCCCCcEEEEecccCce-EEccCC
Confidence 45999999988654332222 233 78898 8886665432100 00000 000112334444332221 122333
Q ss_pred Cc-----------ceeEEEECCCCceEEeecC-CCcEEEeecCCCc
Q 020461 288 FG-----------PINALAFNPDGKSFSSGGE-DGYVRLHHFDPDY 321 (326)
Q Consensus 288 ~~-----------~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~~~~ 321 (326)
.. .+..++|+|||+.|+.++. ++...||.++.+.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 339 STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPE 384 (396)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCT
T ss_pred CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcc
Confidence 32 2567899999998876664 6788888877544
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.1e-17 Score=155.53 Aligned_cols=287 Identities=9% Similarity=-0.004 Sum_probs=169.7
Q ss_pred ceeEEEEccCCCEEEeecC---------CCCeEEEecCCCCee--eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461 12 PLTYLKYNKDGDLLFSCAK---------DHTPTVWFADNGERL--GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~---------d~~v~iw~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd 80 (326)
.+.+++|||||++|++++. ++.|++||+.+++.+ ..+ ...+..++|||||+.|+.+. |+.|++||
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 3889999999999998876 789999999988763 222 24688899999999998875 78999999
Q ss_pred ccCCcEEEEEecCC-------------------CcceeeeecCCeEEEEEc-Cc-ccee---------------------
Q 020461 81 VETGAQLFTFNFDS-------------------PARSVDFAVGDKLAVITT-DP-FMEL--------------------- 118 (326)
Q Consensus 81 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~-~~~~--------------------- 118 (326)
+.+++......... ....+.|+++++.++... +. ....
T Consensus 137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 98887643221111 113678888776555433 21 0000
Q ss_pred ------ceeeeeeeeccCCCCCCCceE--------EEeccCccceeEEEEecCCcEEEEeeCC----CcEEEEE----CC
Q 020461 119 ------NSAIHVKRIARDPADQGGESV--------LILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWD----TE 176 (326)
Q Consensus 119 ------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~s~~~d----~~i~~wd----~~ 176 (326)
...+.++++. ++... ..+.+|...+..++|+|+++.+++.... ..|.+|| ..
T Consensus 217 ~g~~~~~~~l~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTT------YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp TTSCCCEEEEEEEESS------CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred CCCCCCeeEEEEEECC------CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence 0011122111 11110 0123567778999999998777764433 2488999 77
Q ss_pred CCccccccc-cccCcceeeE-----EEEEcCCCCeEEE--EeCCC--eEEEeecCCcceEEEEee-ccceEEEEeCCCCC
Q 020461 177 TGKLLKESD-KETGHKKTIT-----SLAKAADGSHFLT--GSLDK--SAKLWDARTLELIKTYVT-ERPVNAVTMSPLLD 245 (326)
Q Consensus 177 ~~~~~~~~~-~~~~h~~~v~-----~v~~s~~~~~l~s--~s~dg--~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~ 245 (326)
+++...... ...+|...+. .+.|+|||+.++. ...+| .|.+||+.+++. ..+.. ...+..+.+. +++
T Consensus 291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~ 368 (719)
T 1z68_A 291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQD 368 (719)
T ss_dssp SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSS
T ss_pred CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCC
Confidence 776543321 0024555555 7899999996654 44555 577788877663 33332 2335555555 666
Q ss_pred eeEEecCC-----CcceeEeecccCceeeeEeecccceeeec-cccccCcceeEEEECCCCceEEe-ecCC--CcEEEee
Q 020461 246 HVVLGGGQ-----DASAVTTTDHRAGKFEAKFFDKILQEEIG-GVKGHFGPINALAFNPDGKSFSS-GGED--GYVRLHH 316 (326)
Q Consensus 246 ~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~s~d~~~lat-~s~D--g~i~l~~ 316 (326)
.++..+.. ....+...+...+.. ..+.+. .+.+|...+..+.|+||+++++. ++.+ ..+.+|+
T Consensus 369 ~i~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 369 SLFYSSNEFEEYPGRRNIYRISIGSYPP--------SKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEEEEESCGGGCTTCBEEEEEECSSSSC--------CEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EEEEEEecCCCCCceEEEEEEeCCCCCC--------CceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 66655433 111111111100000 011111 13346677889999999988764 4443 3566665
Q ss_pred cC
Q 020461 317 FD 318 (326)
Q Consensus 317 ~~ 318 (326)
..
T Consensus 441 ~~ 442 (719)
T 1z68_A 441 GR 442 (719)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 165
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=5.8e-16 Score=132.01 Aligned_cols=238 Identities=9% Similarity=0.048 Sum_probs=143.6
Q ss_pred CCEEEee----cCCCCeEEEec--CCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC----CcEEEEEccC--CcEEEE
Q 020461 22 GDLLFSC----AKDHTPTVWFA--DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVET--GAQLFT 89 (326)
Q Consensus 22 ~~~l~s~----~~d~~v~iw~~--~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d----~~i~~wd~~~--~~~~~~ 89 (326)
..+++.| +.++.|.+|.+ ++++.......+......++|+|++++|++++.+ +.|.+|++.. ++....
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 3445554 35678899865 5565433222266677889999999999999886 7999998865 322110
Q ss_pred EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCC
Q 020461 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDA 168 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~ 168 (326)
. ....+......+++ +++.+++++ .++
T Consensus 93 ~--------------------------------------------------~~~~~~~~p~~~~~--dg~~l~~~~~~~~ 120 (361)
T 3scy_A 93 N--------------------------------------------------TQKTMGADPCYLTT--NGKNIVTANYSGG 120 (361)
T ss_dssp E--------------------------------------------------EEECSSSCEEEEEE--CSSEEEEEETTTT
T ss_pred e--------------------------------------------------EeccCCCCcEEEEE--CCCEEEEEECCCC
Confidence 0 00011112333444 566666554 688
Q ss_pred cEEEEECCCCccccccccc-----------cCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcc-------eE---
Q 020461 169 IVRIWDTETGKLLKESDKE-----------TGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE-------LI--- 226 (326)
Q Consensus 169 ~i~~wd~~~~~~~~~~~~~-----------~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~-------~~--- 226 (326)
.|.+|++.....+...... ..+...+.+++++|+|+++++++ .++.|++|++.... ..
T Consensus 121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 9999999754333222110 01123357899999999776655 48899999887533 21
Q ss_pred ----EEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce
Q 020461 227 ----KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 302 (326)
Q Consensus 227 ----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~ 302 (326)
........+..++|+|+++.++++...+. .+..+|...+.+.. ...+.....+......++|+|||++
T Consensus 201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~-~v~v~~~~~g~~~~-------~~~~~~~~~~~~~~~~i~~spdg~~ 272 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG-TVIAFRYADGMLDE-------IQTVAADTVNAQGSGDIHLSPDGKY 272 (361)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTC-EEEEEEEETTEEEE-------EEEEESCSSCCCCEEEEEECTTSSE
T ss_pred cccceecCCCCCCeEEEEcCCCCEEEEEcCCCC-eEEEEEecCCceEE-------eEEEecCCCCCCCcccEEECCCCCE
Confidence 11223345788999999998777653332 23333333222110 0111222333445689999999998
Q ss_pred EEeecC--CCcEEEeecCC
Q 020461 303 FSSGGE--DGYVRLHHFDP 319 (326)
Q Consensus 303 lat~s~--Dg~i~l~~~~~ 319 (326)
|++++. ++.|++|++++
T Consensus 273 l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 273 LYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp EEEEECSSSCEEEEEEECT
T ss_pred EEEECCCCCCEEEEEEEcC
Confidence 866555 58999999974
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=1.4e-16 Score=146.79 Aligned_cols=252 Identities=12% Similarity=0.005 Sum_probs=161.4
Q ss_pred eeeecCCceeEEEEccCCCEEEee--cCCCCeEEEecCCCCeeeeccCcccceE---------EEEEc--CCCCe-EEEE
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSC--AKDHTPTVWFADNGERLGTYRGHNGAVW---------CCDVS--RDSMT-LITG 70 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~--~~d~~v~iw~~~~~~~~~~~~~h~~~V~---------~~~~~--~~~~~-l~s~ 70 (326)
.+.+|...+..++|++++-++++. +.++...||....+.....+..|...+. ...|+ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 466788999999999887777777 6788999998655555556666665655 55555 99988 6655
Q ss_pred eC-CCcEEEEEcc--C-CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc
Q 020461 71 SA-DQTAKLWNVE--T-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (326)
Q Consensus 71 ~~-d~~i~~wd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (326)
+. +..|.+|++. + ++.. .+. ... ...|.
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~-~l~-------------------------------------~~~----------~~~~~ 129 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPR-PLT-------------------------------------PVS----------AVGGG 129 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCE-ECS-------------------------------------CCC----------CSTTC
T ss_pred ECCCCeEEEEcCCCCCCCCCE-ecc-------------------------------------CCc----------cCCCC
Confidence 43 3444444443 1 2211 000 000 00133
Q ss_pred cceeEEEEecCCcEEEEeeCC----------CcEEEEECCC------CccccccccccCcceeeEEEEEcCCCCeEEEEe
Q 020461 147 GRINRAVWGPLNRTIISAGED----------AIVRIWDTET------GKLLKESDKETGHKKTITSLAKAADGSHFLTGS 210 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d----------~~i~~wd~~~------~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s 210 (326)
..+..++|+|+++.|++++.+ ..|.+||+.+ ++.. .+. ..+...+..++|||||++|+.++
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~--~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELS--DDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESS--CSCSSEECCCEECTTSSEEEEEE
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEE--ecCCCcccCceECCCCCEEEEEE
Confidence 456778999999999988877 5899999987 4432 221 03445778899999999999887
Q ss_pred CCC--------eEEEeecC-Cc---ceEEEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc
Q 020461 211 LDK--------SAKLWDAR-TL---ELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 277 (326)
Q Consensus 211 ~dg--------~i~iwd~~-~~---~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 277 (326)
.++ .|++||+. ++ +...-... ...+..+.|+|+++.++++ ..++. ..++.++...
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~-~~~~~-----------~~l~~~~~~~ 274 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVAT-DRTGW-----------WNLHRVDPAT 274 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEE-CTTSS-----------CEEEEECTTT
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEE-CCCCC-----------eEEEEEECCC
Confidence 653 79999998 56 33322222 4578899999999844443 33221 1223333212
Q ss_pred eeeeccccccCcc--------eeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461 278 QEEIGGVKGHFGP--------INALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 278 ~~~~~~~~~h~~~--------v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
++......++... +..++|+|+++++++++. +.++||.++.+
T Consensus 275 ~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~ 324 (662)
T 3azo_A 275 GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE 324 (662)
T ss_dssp CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC
Confidence 2111111222211 567999999999999999 99999977654
No 167
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=1.2e-15 Score=126.39 Aligned_cols=244 Identities=11% Similarity=0.039 Sum_probs=161.5
Q ss_pred ceeeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 3 PILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
+..+..+.....+++|+|+++ +++++..++.|.+|+..++ ...+..+...+.+++++++++++++...++.|.+||.
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 355666677788999999998 7888889999999998877 5666677788999999999998777777789999998
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
.+++......... ......++.++++|+|+++
T Consensus 98 ~~g~~~~~~~~~~------------------------------------------------~~~~~~~~~i~~d~~G~l~ 129 (296)
T 3e5z_A 98 PGGEWESIADSFE------------------------------------------------GKKLNSPNDVCLAPDGSLW 129 (296)
T ss_dssp TTCCEEEEECEET------------------------------------------------TEECCCCCCEEECTTSCEE
T ss_pred CCCcEEEEeeccC------------------------------------------------CCCCCCCCCEEECCCCCEE
Confidence 7776432110000 0001234567788888877
Q ss_pred EE----ee-------------CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC-Cc
Q 020461 162 IS----AG-------------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TL 223 (326)
Q Consensus 162 ~s----~~-------------~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~-~~ 223 (326)
++ |. ..+.|..++.. ++. ..+ ..+......++++|+++.+++.+.++.|++||+. ++
T Consensus 130 vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~---~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g 204 (296)
T 3e5z_A 130 FSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAP---IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARG 204 (296)
T ss_dssp EEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEE---ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSS
T ss_pred EECCccccccccccccccccCCCcEEEEECCC-CCE-EEe---ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCC
Confidence 76 33 12355555544 332 222 2334556889999999988888888999999987 44
Q ss_pred ce---EEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE-CC
Q 020461 224 EL---IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF-NP 298 (326)
Q Consensus 224 ~~---~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-s~ 298 (326)
+. ...+. ....+.++++++++...++. .. .+ ..|+.. ++.+..+..+.. +.+++| +|
T Consensus 205 ~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~--~v------------~~~~~~-g~~~~~~~~~~~-~~~~~f~~~ 266 (296)
T 3e5z_A 205 ETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD--GV------------HVLTPD-GDELGRVLTPQT-TSNLCFGGP 266 (296)
T ss_dssp CEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT--EE------------EEECTT-SCEEEEEECSSC-CCEEEEEST
T ss_pred cCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC--eE------------EEECCC-CCEEEEEECCCC-ceeEEEECC
Confidence 43 22221 12345678888888644433 21 12 223322 222333444555 899999 69
Q ss_pred CCceEEeecCCCcEEEeecCCCce
Q 020461 299 DGKSFSSGGEDGYVRLHHFDPDYF 322 (326)
Q Consensus 299 d~~~lat~s~Dg~i~l~~~~~~~~ 322 (326)
+++.|..++.+ .||+++++..
T Consensus 267 d~~~L~v~t~~---~l~~~~~~~~ 287 (296)
T 3e5z_A 267 EGRTLYMTVST---EFWSIETNVR 287 (296)
T ss_dssp TSCEEEEEETT---EEEEEECSCC
T ss_pred CCCEEEEEcCC---eEEEEEcccc
Confidence 99988888877 4666665543
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=6.5e-16 Score=130.71 Aligned_cols=212 Identities=12% Similarity=0.066 Sum_probs=140.8
Q ss_pred ceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCcc------cceEEEEEcCCCCeEEEEeCC-----------
Q 020461 12 PLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHN------GAVWCCDVSRDSMTLITGSAD----------- 73 (326)
Q Consensus 12 ~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h~------~~V~~~~~~~~~~~l~s~~~d----------- 73 (326)
.+..++|+|+++++ +++..++.|.+||..+++.+..+..+. ..+..++|+|+++++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 46889999999865 566678999999999998877665322 337889999999999998865
Q ss_pred -CcEEEEEccCCcE---EEEEecCCCcceeeeecCCeEEEEEcCccceec--eeeeeeeeccCC-C--------------
Q 020461 74 -QTAKLWNVETGAQ---LFTFNFDSPARSVDFAVGDKLAVITTDPFMELN--SAIHVKRIARDP-A-------------- 132 (326)
Q Consensus 74 -~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~-------------- 132 (326)
+.|.+||+.+++. +..+.....+.++.+++++.+.+ ........+ .......+.... .
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 202 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred CCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEE-ccCcEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence 8999999988442 23344444456666777766433 322111110 000000000000 0
Q ss_pred -CCC------------------------------------C-ceEEEeccCccceeEEEEec-CCcEEEEeeCCCcEEEE
Q 020461 133 -DQG------------------------------------G-ESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIW 173 (326)
Q Consensus 133 -~~~------------------------------------~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~~w 173 (326)
... + ........+...+..+.++| +++.++++ ++.|.+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~ 280 (349)
T 1jmx_B 203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKY 280 (349)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEE
T ss_pred CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEE
Confidence 000 0 00000111223456788899 99988887 8899999
Q ss_pred ECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
|+.+++....+. ....+.++++++++++|++++.++.|++||+++++.+..+.
T Consensus 281 d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 281 DLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp ETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred ECccCeEEEEEc----CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 999887665443 22346789999999999998889999999999998877764
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=2.7e-15 Score=127.86 Aligned_cols=258 Identities=11% Similarity=0.025 Sum_probs=156.7
Q ss_pred EEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCc------ccceEEEEEcCCCCeEEEEeC--CCcE
Q 020461 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRDSMTLITGSA--DQTA 76 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h------~~~V~~~~~~~~~~~l~s~~~--d~~i 76 (326)
.++|+|||++|++++ .+++|.+||..+++.+.++... ......++++||+++|+++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 899999999998876 3678999999998888777532 234567899999999998874 6899
Q ss_pred EEEEccCCcEEEE-EecCCCcceeeeecC--CeEEEEEcCccceeceeeeeeeeccCCCCCCCceE------EEeccCcc
Q 020461 77 KLWNVETGAQLFT-FNFDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESV------LILKGPQG 147 (326)
Q Consensus 77 ~~wd~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 147 (326)
.+||+.+++.+.. +..... ..+.+.+. ..++..+.+..... .... ..+... ..+.....
T Consensus 134 ~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~------v~~~-----~~g~~~~~~~~~~~~~~~~~ 201 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLT------INLG-----EDGKVASQSRSKQMFSVKDD 201 (361)
T ss_dssp EEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEE------EEEC-----TTSSEEEEEECCCCSCTTTS
T ss_pred EEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEE------EEEC-----CCCcEeeeccccceEcCCCC
Confidence 9999999887665 432211 00111221 12222222111000 0000 000000 00011111
Q ss_pred ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccc--ccccc------ccC-cceeeEEEEEcCCCCeEEEEeC-------
Q 020461 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDK------ETG-HKKTITSLAKAADGSHFLTGSL------- 211 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~------~~~-h~~~v~~v~~s~~~~~l~s~s~------- 211 (326)
++ .+..+|++..++..+.++.|.++|+...+.. ..... ..+ .......+++++++..++++..
T Consensus 202 ~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 202 PI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp CB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred ce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 11 2233566666676778899999998654321 10000 000 0011123688999888777653
Q ss_pred ----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce--eeecccc
Q 020461 212 ----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--EEIGGVK 285 (326)
Q Consensus 212 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~ 285 (326)
.++|.+||+++++.+..+.... +..++++|+++.++++.. ..+. +|+..+. +.++.+.
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~---~~v~------------v~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG---GNVN------------VYDISQPEPKLLRTIE 344 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS---SCEE------------EEECSSSSCEEEEEET
T ss_pred ccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC---CeEE------------EEECCCCcceeeEEec
Confidence 3489999999999999988777 999999999998877653 2233 3444444 4444444
Q ss_pred ccCcceeEEEECCCCc
Q 020461 286 GHFGPINALAFNPDGK 301 (326)
Q Consensus 286 ~h~~~v~~v~~s~d~~ 301 (326)
.+....+.++|+|||+
T Consensus 345 ~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 345 GAAEASLQVQFHPVGG 360 (361)
T ss_dssp TSCSSEEEEEECCCSC
T ss_pred cCCCCcEEEEecCCCC
Confidence 4556678899999986
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.72 E-value=5.3e-15 Score=126.36 Aligned_cols=230 Identities=8% Similarity=-0.031 Sum_probs=140.6
Q ss_pred CCeEEEec--CCCCeee--ecc-CcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc-CCcEEEEEecCCCcceeeeecCC
Q 020461 32 HTPTVWFA--DNGERLG--TYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE-TGAQLFTFNFDSPARSVDFAVGD 105 (326)
Q Consensus 32 ~~v~iw~~--~~~~~~~--~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~ 105 (326)
+.|.+|++ .+++... ... +....+..++|+|++++|++++.+ .|.+|++. +++........
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~------------ 80 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP------------ 80 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE------------
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee------------
Confidence 45776654 4554422 111 233467789999999999999988 89999986 55432211100
Q ss_pred eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE--EEEee-------------CCCcE
Q 020461 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT--IISAG-------------EDAIV 170 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~s~~-------------~d~~i 170 (326)
.+ +....++++|+++. ++++. .++++
T Consensus 81 --------------------------------------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 81 --------------------------------------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp --------------------------------------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred --------------------------------------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 00 01223567788873 44553 68999
Q ss_pred EEEECC-CCccccccccc-cCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecC-CcceE--EEEe--e-ccceEEEEeC
Q 020461 171 RIWDTE-TGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDAR-TLELI--KTYV--T-ERPVNAVTMS 241 (326)
Q Consensus 171 ~~wd~~-~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~-~~~~~--~~~~--~-~~~~~~~~~s 241 (326)
.+|++. +++....+... ..+...+.+++++|||+++++++. ++.|++||+. +++.. ..+. . ...+..++|+
T Consensus 122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s 201 (365)
T 1jof_A 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH 201 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence 999996 45543322210 123456889999999998887764 6899999998 66653 2232 1 3458899999
Q ss_pred CCCCeeEEecCCCc-ceeEeecccCceeeeEeecccceeeecc----ccccCc------ceeEEE-ECCCCceEEeecCC
Q 020461 242 PLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGG----VKGHFG------PINALA-FNPDGKSFSSGGED 309 (326)
Q Consensus 242 ~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~h~~------~v~~v~-~s~d~~~lat~s~D 309 (326)
|+++.++++...+. ..+..+|...+...... ..+.. ..+|.. .+..++ |+|||++|++++.+
T Consensus 202 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 202 PTGNYLYALMEAGNRICEYVIDPATHMPVYTH------HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCCEEEEE------EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc------ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99998877654332 22222232222221100 00111 123433 588999 99999998777653
Q ss_pred C------cEEEeecCC
Q 020461 310 G------YVRLHHFDP 319 (326)
Q Consensus 310 g------~i~l~~~~~ 319 (326)
. +|++|++++
T Consensus 276 ~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 276 NKFELQGYIAGFKLRD 291 (365)
T ss_dssp SSTTSCCEEEEEEECT
T ss_pred CCCCCCCeEEEEEECC
Confidence 3 899999974
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=1.4e-15 Score=140.12 Aligned_cols=235 Identities=11% Similarity=-0.023 Sum_probs=147.8
Q ss_pred EEEEc--cCCCE-EEeecC-CCCeEEEecC--C-CCeeeeccC-----cccceEEEEEcCCCCeEEEEeCC---------
Q 020461 15 YLKYN--KDGDL-LFSCAK-DHTPTVWFAD--N-GERLGTYRG-----HNGAVWCCDVSRDSMTLITGSAD--------- 73 (326)
Q Consensus 15 ~~~~s--~~~~~-l~s~~~-d~~v~iw~~~--~-~~~~~~~~~-----h~~~V~~~~~~~~~~~l~s~~~d--------- 73 (326)
...|+ |||++ |+.++. +..|.+|+.. . ++ ...+.. |...+..++|+|||+.|+.++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 45555 99998 765554 5566666654 2 33 344444 67788999999999999988876
Q ss_pred -CcEEEEEccC------CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec-cC
Q 020461 74 -QTAKLWNVET------GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GP 145 (326)
Q Consensus 74 -~~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 145 (326)
..|.+||+.+ ++.. .+. .+
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~-----------------------------------------------------~l~~~~ 186 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVR-----------------------------------------------------ELSDDA 186 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSE-----------------------------------------------------ESSCSC
T ss_pred eeEEEEEECCCCccccCCcee-----------------------------------------------------EEEecC
Confidence 4677888765 3221 011 12
Q ss_pred ccceeEEEEecCCcEEEEeeCC--------CcEEEEECC-CCc--cccccccccCcceeeEEEEEcCCCCeEEEEeCCC-
Q 020461 146 QGRINRAVWGPLNRTIISAGED--------AIVRIWDTE-TGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK- 213 (326)
Q Consensus 146 ~~~i~~~~~~~~~~~l~s~~~d--------~~i~~wd~~-~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg- 213 (326)
...+..+.|+|+|+.|+.++.+ ..|.+||+. +++ ....+. .+|...+..+.|+|||+++++++.++
T Consensus 187 ~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~~~~~~~~spdg~l~~~~~~~~~ 264 (662)
T 3azo_A 187 HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEEAIAQAEWAPDGSLIVATDRTGW 264 (662)
T ss_dssp SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCceEcceEECCCCeEEEEECCCCC
Confidence 2345567899999999877755 379999998 562 222221 23467789999999999888888888
Q ss_pred -eEEEeecCCcceEEEEeeccc---------eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461 214 -SAKLWDARTLELIKTYVTERP---------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283 (326)
Q Consensus 214 -~i~iwd~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (326)
.|..||..+++.......... +..++++|++..++.+.. ... .+...+...++ +..
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~------------~l~~~d~~~~~-~~~ 330 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA------------VLGILDPESGE-LVD 330 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC------------EEEEEETTTTE-EEE
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc------------EEEEEECCCCc-EEE
Confidence 667777766664332222111 345666666655544432 222 22222322222 234
Q ss_pred ccccCcceeEE-EECCCCceEEeecCCCcEEEeecCC
Q 020461 284 VKGHFGPINAL-AFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 284 ~~~h~~~v~~v-~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+..|.+.+..+ +++++.-.+++++.+....||.++.
T Consensus 331 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 331 AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 55666778777 6665555677778888778877764
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=8.3e-16 Score=143.36 Aligned_cols=248 Identities=8% Similarity=-0.038 Sum_probs=148.0
Q ss_pred EEEEccCCCEEEeecCC---------CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 15 YLKYNKDGDLLFSCAKD---------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d---------~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
.++|||||++|+.++.+ +.+.+||+.+++.. .+..|.+.+..++|||||+.|+.+ .|+.|.+||+.+++
T Consensus 66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 47899999999998886 45569999998765 466778889999999999999877 46889999998876
Q ss_pred EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc---------cceeEEEEec
Q 020461 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ---------GRINRAVWGP 156 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~ 156 (326)
... +..+..... .+.++. +....+.|||
T Consensus 144 ~~~-lt~~g~~~~------------------------------------------~~~g~~~~v~~ee~~~~~~~~~wSp 180 (740)
T 4a5s_A 144 SYR-ITWTGKEDI------------------------------------------IYNGITDWVYEEEVFSAYSALWWSP 180 (740)
T ss_dssp CEE-CCSCCBTTT------------------------------------------EEESBCCHHHHHHTSSSSBCEEECT
T ss_pred eEE-EcCCCCccc------------------------------------------eecCcccccccchhcCCCcceEECC
Confidence 432 111110000 000111 1122356677
Q ss_pred CCcEEEEeeCCC------------------------------------cEEEEECCC---Ccc--cccccc---ccCcce
Q 020461 157 LNRTIISAGEDA------------------------------------IVRIWDTET---GKL--LKESDK---ETGHKK 192 (326)
Q Consensus 157 ~~~~l~s~~~d~------------------------------------~i~~wd~~~---~~~--~~~~~~---~~~h~~ 192 (326)
+|+.|+.++.|. +|++||+.+ ++. ...+.. ..+|..
T Consensus 181 Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~ 260 (740)
T 4a5s_A 181 NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH 260 (740)
T ss_dssp TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE
T ss_pred CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe
Confidence 766666554221 588899987 632 112211 013778
Q ss_pred eeEEEEEcCCCCeEEEEeC----CCeEEEeecCCcc----eE--EEE---eeccce-----EEEEeCCCCCeeE-EecCC
Q 020461 193 TITSLAKAADGSHFLTGSL----DKSAKLWDARTLE----LI--KTY---VTERPV-----NAVTMSPLLDHVV-LGGGQ 253 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~----dg~i~iwd~~~~~----~~--~~~---~~~~~~-----~~~~~s~~~~~~~-~~~~~ 253 (326)
.+..++|+|||+.++.... +..|++||+.+++ +. ..+ .+...+ ....|+|+++.++ .....
T Consensus 261 ~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~ 340 (740)
T 4a5s_A 261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE 340 (740)
T ss_dssp EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT
T ss_pred EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC
Confidence 8999999999997665543 3479999999887 22 222 122222 3678999998876 43322
Q ss_pred CcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce-EEeecC----CCcEEEeecCCC
Q 020461 254 DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS-FSSGGE----DGYVRLHHFDPD 320 (326)
Q Consensus 254 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~-lat~s~----Dg~i~l~~~~~~ 320 (326)
+ +...+++++...++... +......|..+.. +|++. +++++. -+...||.++.+
T Consensus 341 ~-----------G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~ 399 (740)
T 4a5s_A 341 E-----------GYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLI 399 (740)
T ss_dssp T-----------SCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred C-----------CceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECC
Confidence 2 22345555543332222 2222334555432 33554 444444 355677766543
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=4.6e-14 Score=118.81 Aligned_cols=250 Identities=12% Similarity=0.015 Sum_probs=154.2
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC----CcEEEEEc
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNV 81 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d----~~i~~wd~ 81 (326)
+.++...+.+++|+++|++++++..++.|.+|+.++++.......+...+.+++++++++++++...+ +.|.+||.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 45566677899999999988888899999999998887665444566789999999999877777666 67888888
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
++++....+.. ..+...++.+.++|++..+
T Consensus 120 ~~~~~~~~~~~--------------------------------------------------~~~~~~~~~i~~d~~g~l~ 149 (333)
T 2dg1_A 120 NGDNLQDIIED--------------------------------------------------LSTAYCIDDMVFDSKGGFY 149 (333)
T ss_dssp TSCSCEEEECS--------------------------------------------------SSSCCCEEEEEECTTSCEE
T ss_pred CCCEEEEEEcc--------------------------------------------------CccCCcccceEECCCCCEE
Confidence 76543211100 0012346678889988877
Q ss_pred EEeeC------CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecCC-cceEEEE----
Q 020461 162 ISAGE------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDART-LELIKTY---- 229 (326)
Q Consensus 162 ~s~~~------d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~~-~~~~~~~---- 229 (326)
++... .+.|..+|..+++... +. .+...+..+++++++..+ ++.+.++.|.+||+++ +..+..+
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTVTP-II---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCEEE-EE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred EEeccccccCCCceEEEEeCCCCEEEE-ee---cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 76553 3456666655443322 11 122346789999999865 4555688999999964 3332211
Q ss_pred ----eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc-ccccCcceeEEEECCCCceEE
Q 020461 230 ----VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAFNPDGKSFS 304 (326)
Q Consensus 230 ----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~s~d~~~la 304 (326)
.....+..+++++++...+...+.. .+..+|.. +.. ...+. ... ..+|...+.+++|+||++.|.
T Consensus 226 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~--~v~~~d~~-g~~-~~~~~------~~~~~~g~~~~~~~~~~~~dg~~L~ 295 (333)
T 2dg1_A 226 PYYFTGHEGPDSCCIDSDDNLYVAMYGQG--RVLVFNKR-GYP-IGQIL------IPGRDEGHMLRSTHPQFIPGTNQLI 295 (333)
T ss_dssp EEECCSSSEEEEEEEBTTCCEEEEEETTT--EEEEECTT-SCE-EEEEE------CTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred EEecCCCCCCCceEECCCCCEEEEEcCCC--EEEEECCC-CCE-EEEEE------cCCCccccccCcceEEECCCCCEEE
Confidence 1112567888998876444332222 22233321 111 00000 000 012333689999999987776
Q ss_pred eecCCC----cEEEeecCC
Q 020461 305 SGGEDG----YVRLHHFDP 319 (326)
Q Consensus 305 t~s~Dg----~i~l~~~~~ 319 (326)
.++.++ .-.||.++.
T Consensus 296 v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 296 ICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp EEEECGGGTCCEEEEEEEC
T ss_pred EEeCccCCCCCceEEEEec
Confidence 555553 345665543
No 174
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.70 E-value=2.5e-14 Score=117.11 Aligned_cols=222 Identities=11% Similarity=0.093 Sum_probs=153.7
Q ss_pred cCCCEEEeecCCCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcce
Q 020461 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS 98 (326)
Q Consensus 20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 98 (326)
..+++|++++.|+.|.+||.++|+.+-++..+. ..+..+++.|+|++++ +.++.|..||. +++.+..+....
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~---- 75 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPA---- 75 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCT----
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCC----
Confidence 346889999999999999999999998888776 4788999999999888 45678999998 777665443210
Q ss_pred eeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC-CCcEEEEECCC
Q 020461 99 VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTET 177 (326)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~~wd~~~ 177 (326)
...+..+.+.|+++++++.+. ++.|..+|. +
T Consensus 76 -----------------------------------------------~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~ 107 (276)
T 3no2_A 76 -----------------------------------------------GCEMQTARILPDGNALVAWCGHPSTILEVNM-K 107 (276)
T ss_dssp -----------------------------------------------TCEEEEEEECTTSCEEEEEESTTEEEEEECT-T
T ss_pred -----------------------------------------------CccccccEECCCCCEEEEecCCCCEEEEEeC-C
Confidence 012344566778888887776 777777775 5
Q ss_pred Cccccccccc---cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCC
Q 020461 178 GKLLKESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 178 ~~~~~~~~~~---~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
++.+..+... ..+......++..++|.++++...++.|..||.+ ++.+.++.....+..+...++++.++++....
T Consensus 108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~ 186 (276)
T 3no2_A 108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAH 186 (276)
T ss_dssp SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTS
T ss_pred CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCC
Confidence 6554443211 1122345566788999999999999999999998 99999987665666778888887766554332
Q ss_pred cceeEeecccCceeeeEeecccceeeeccccc-cCcceeEEEECCCCceEEee
Q 020461 255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSG 306 (326)
Q Consensus 255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~ 306 (326)
.+..+|...+....++-.. .+.+ ....+..++..++|..+++.
T Consensus 187 --~v~~~d~~tG~~~w~~~~~-------~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 187 --CFVQLNLESNRIVRRVNAN-------DIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp --EEEEECTTTCCEEEEEEGG-------GSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred --eEEEEeCcCCcEEEEecCC-------CCCCccccccccceEcCCCCEEEEe
Confidence 3455565545432222110 0001 12347788888899888776
No 175
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=3e-14 Score=116.17 Aligned_cols=242 Identities=7% Similarity=-0.079 Sum_probs=156.0
Q ss_pred ceeEEEEccCCCEEE-eecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~-s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
...+++++++|++++ +...++.|.+|+..++........+...+.+++++++++++++.. ++.|.+||..+..... +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e
Confidence 668999999999887 657889999998765543322223335678899999988665555 8889999876543210 0
Q ss_pred ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcE
Q 020461 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i 170 (326)
. ......+..++++|++..+++...++.|
T Consensus 103 ~---------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i 131 (270)
T 1rwi_B 103 P---------------------------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRV 131 (270)
T ss_dssp C---------------------------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEE
T ss_pred e---------------------------------------------------cCCcCCCcceEECCCCCEEEEECCCCEE
Confidence 0 0011235667888888877777778899
Q ss_pred EEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCCeeEE
Q 020461 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVL 249 (326)
Q Consensus 171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~ 249 (326)
.+|+..+....... ......+..++++++|..+++...++.|..||............. ..+.++++++++ .+++
T Consensus 132 ~~~~~~~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v 207 (270)
T 1rwi_B 132 VKLAAGSKTQTVLP---FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYV 207 (270)
T ss_dssp EEECTTCCSCEECC---CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEE
T ss_pred EEEECCCceeEeec---cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEE
Confidence 99986544322111 122235778999999987777777899999998876544322222 457889999988 4444
Q ss_pred ecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461 250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 323 (326)
Q Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~ 323 (326)
+...+. .+..+|..... .......+...+..++++|+|..+++...+++|++++.+.+.+-
T Consensus 208 ~~~~~~-~v~~~~~~~~~------------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 208 TEHNTN-QVVKLLAGSTT------------STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp EETTTS-CEEEECTTCSC------------CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred EECCCC-cEEEEcCCCCc------------ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 432222 12222321111 00011123356889999999999999999999999998877653
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=1.4e-14 Score=134.49 Aligned_cols=246 Identities=12% Similarity=-0.008 Sum_probs=152.0
Q ss_pred cCCceeEEEEccCCCEEEeecCCC-----CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCc--------
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDH-----TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT-------- 75 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~-----~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~-------- 75 (326)
|...+..++|||||++|+.++.++ .|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 434578899999999998765543 8999999999876533222 23678999999999998887765
Q ss_pred --------EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461 76 --------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (326)
Q Consensus 76 --------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (326)
|.+|++.+++... ..+.....+..
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~------------------------------------------------~~v~~~~~~~~ 233 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSED------------------------------------------------ILCAEFPDEPK 233 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGC------------------------------------------------EEEECCTTCTT
T ss_pred cccCCCCEEEEEECCCCcccc------------------------------------------------eEEeccCCCCe
Confidence 6666665443100 00000112334
Q ss_pred ceeEEEEecCCcEEEEeeC-----CCcEEEEECCC------Cc-cccccccccCcceeeEEEEEcCCCCeEEEEeCC---
Q 020461 148 RINRAVWGPLNRTIISAGE-----DAIVRIWDTET------GK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLD--- 212 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~------~~-~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d--- 212 (326)
.+..+.|+|++++|+..+. +..|.+||+.+ ++ ....+. .+...+.. .++++|..|+..+.+
T Consensus 234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI---DNFEGEYD-YVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE---CSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee---CCCCcEEE-EEeccCCEEEEEECCCCC
Confidence 4567889999998887654 56899999976 42 222222 23333333 477888887766653
Q ss_pred -CeEEEeecCCcc--eEEEEeec---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc
Q 020461 213 -KSAKLWDARTLE--LIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 286 (326)
Q Consensus 213 -g~i~iwd~~~~~--~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (326)
+.|.+||+.+++ ..+.+... ..+..+++++. +.++++...++ ...++.++...+.....+..
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~lv~~~~~~g-----------~~~l~~~~~~~g~~~~~l~~ 377 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS-NFLVLCYLHDV-----------KNTLQLHDLATGALLKIFPL 377 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT-TEEEEEEEETT-----------EEEEEEEETTTCCEEEEECC
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC-CEEEEEEEECC-----------EEEEEEEECCCCCEEEecCC
Confidence 369999998764 23344332 24667777753 44444433332 12334444322333334455
Q ss_pred cCcceeEEEECCCCceEEee----cCCCcEEEeecCC
Q 020461 287 HFGPINALAFNPDGKSFSSG----GEDGYVRLHHFDP 319 (326)
Q Consensus 287 h~~~v~~v~~s~d~~~lat~----s~Dg~i~l~~~~~ 319 (326)
+.+.|..++++|++..++.. ...++|.+|++..
T Consensus 378 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 378 EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 67788999999998765422 2356788877654
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=3.4e-14 Score=119.66 Aligned_cols=246 Identities=10% Similarity=-0.001 Sum_probs=163.7
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
..+.++.|++++..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 347788999999888888889999999 45566667777777899999999997778888999999998776532110
Q ss_pred ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC---
Q 020461 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED--- 167 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--- 167 (326)
..+...+..++++|+++++++...+
T Consensus 83 ----------------------------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 83 ----------------------------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp ----------------------------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred ----------------------------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCC
Confidence 0112356778899999877777666
Q ss_pred -CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC------CCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461 168 -AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTYVTERPVNAVTM 240 (326)
Q Consensus 168 -~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 240 (326)
+.|.+||..+++....+. ...+...+..++++++|..+++... .+.|..+|.++++..........++.+++
T Consensus 111 ~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 189 (333)
T 2dg1_A 111 TGGIFAATENGDNLQDIIE-DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIAL 189 (333)
T ss_dssp CCEEEEECTTSCSCEEEEC-SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred CceEEEEeCCCCEEEEEEc-cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence 689999988765432221 1123456889999999987777654 35677777766554333233345788999
Q ss_pred CCCCCeeEEecCCCcceeEeecccC-ceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 241 SPLLDHVVLGGGQDASAVTTTDHRA-GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
+|+++.++++...+. .+..+|... +.. ...+. ......+.++ ..+..++++++|.++++...++.|.+|+.+
T Consensus 190 ~~dg~~l~v~~~~~~-~i~~~d~~~~g~~-~~~~~---~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 190 STDEKVLWVTETTAN-RLHRIALEDDGVT-IQPFG---ATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp CTTSSEEEEEEGGGT-EEEEEEECTTSSS-EEEEE---EEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCCCCEEEEEeCCCC-eEEEEEecCCCcC-ccccc---ceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 999987766543222 233333321 110 00000 0001111222 357889999999998888888999998764
No 178
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=4.2e-15 Score=127.80 Aligned_cols=240 Identities=11% Similarity=0.026 Sum_probs=148.6
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEE--EcCCCCeEEEE-------------
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD--VSRDSMTLITG------------- 70 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~--~~~~~~~l~s~------------- 70 (326)
..+|...+..+.|||||++|+.++.++.+++||+.+++....+..+.+.+.... +++++++++..
T Consensus 76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccccc
Confidence 344555555678999999999999999999999999987766666666554443 48899887642
Q ss_pred ---------eCCCcEEEEEccCCcEEEEEecCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE
Q 020461 71 ---------SADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 140 (326)
Q Consensus 71 ---------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (326)
+.+..|.+||+.+++...............+++ +...++........ .....++.+... +....
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~-~~~~~l~~~d~~-----~~~~~ 229 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHD-LVDARMWLINED-----GTNMR 229 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTT-TSSCSEEEEETT-----SCCCE
T ss_pred chhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCC-CCcceEEEEeCC-----CCceE
Confidence 345679999999987765555555566778888 66544433321000 001111211110 11222
Q ss_pred EeccCc--cceeEEEEecCCcEEEEeeC-CC----cEEEEECCCCccccccccccCccee---eEEEEEcCCCCeEEEE-
Q 020461 141 ILKGPQ--GRINRAVWGPLNRTIISAGE-DA----IVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTG- 209 (326)
Q Consensus 141 ~~~~~~--~~i~~~~~~~~~~~l~s~~~-d~----~i~~wd~~~~~~~~~~~~~~~h~~~---v~~v~~s~~~~~l~s~- 209 (326)
.+..+. ..+....|+|+++.|+..+. ++ .|.+||+.+++... +....++... .....|+|||+.|+..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 308 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDV 308 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE-EEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE-EEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence 233333 25778899999997755433 22 39999998876422 1111121111 1224789999988754
Q ss_pred --------eCCCeEEEeecCCcceEEEEeecc-----------ceEEEEeCCCCCeeEEecC
Q 020461 210 --------SLDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 210 --------s~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~~~~~~ 252 (326)
..+..|++||+.+++...-..... .+..++|+|+++.++.++.
T Consensus 309 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 309 QDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp --------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred eeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 456789999999877543323333 3677899999988876643
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.65 E-value=1.8e-13 Score=116.60 Aligned_cols=281 Identities=13% Similarity=0.092 Sum_probs=171.5
Q ss_pred cCCCEEEeec------CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEEccC
Q 020461 20 KDGDLLFSCA------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVET 83 (326)
Q Consensus 20 ~~~~~l~s~~------~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~ 83 (326)
+++++++.+. .|+.|.+||.++++.+.++..+..+ .++|+||++++++++ .+++|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 4566666543 4789999999999998888877666 899999999999886 367899999999
Q ss_pred CcEEEEEecC-------CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEEEEe
Q 020461 84 GAQLFTFNFD-------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWG 155 (326)
Q Consensus 84 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 155 (326)
.+.+..+... .....+.++++.+.++++... ....+.++++. .++.+.. +... ....+.+.
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~---~~~~v~v~d~~------~~~~~~~~i~~~--~~~~v~~~ 159 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS---PATSIGIVDVA------KGDYVEDVTAAA--GCWSVIPQ 159 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES---SSEEEEEEETT------TTEEEEEEGGGT--TEEEEEEC
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC---CCCeEEEEECC------CCcEEEEEecCC--CcceeEEc
Confidence 8887766532 234566778777666554311 01223333222 1222332 2211 11124456
Q ss_pred cCC-cEEEEeeCCCcEEEEECCC-Cccccccc---cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEE
Q 020461 156 PLN-RTIISAGEDAIVRIWDTET-GKLLKESD---KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKT 228 (326)
Q Consensus 156 ~~~-~~l~s~~~d~~i~~wd~~~-~~~~~~~~---~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~ 228 (326)
|++ ..+++.+.||.+.+|+... ++...... .......+ ..+..++++..++..+.++.+.++|+..... +..
T Consensus 160 p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~ 238 (361)
T 2oiz_A 160 PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGP 238 (361)
T ss_dssp TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEE
T ss_pred CCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceeccc
Confidence 665 5777888999999998854 43321100 00011111 2333467777788888899999999875432 222
Q ss_pred Eeec-----------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC
Q 020461 229 YVTE-----------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297 (326)
Q Consensus 229 ~~~~-----------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 297 (326)
+... .....++++|+++.++++...++.. .........+..|+..+.+.+..+..+. +..++|+
T Consensus 239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~---~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~s 313 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE---GTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTID 313 (361)
T ss_dssp EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT---TCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEE
T ss_pred ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc---ccccCCCceEEEEECCCCcEEEEEecCC--eeEEEEC
Confidence 2110 0112367888888877653200000 0000011234556666666666666665 8999999
Q ss_pred CCCceEEeecCCCcEEEeecCCC
Q 020461 298 PDGKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 298 ~d~~~lat~s~Dg~i~l~~~~~~ 320 (326)
|||++|++++. ++|.+|+....
T Consensus 314 pdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 314 QQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCCEEEEeCC-CeEEEEECCCC
Confidence 99999998887 99999987654
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=6.3e-14 Score=118.61 Aligned_cols=227 Identities=14% Similarity=0.080 Sum_probs=138.6
Q ss_pred CceeEEEEccCCCEEEeec---------CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---Cc--E
Q 020461 11 RPLTYLKYNKDGDLLFSCA---------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QT--A 76 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~---------~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~--i 76 (326)
..+...++ ||++++... .++.|.+|++.+++... + ..+..+.|+|||++|+.++.+ +. |
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34667777 898877642 26778999998887543 3 567889999999998877754 33 6
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
.+||+.+++......... +..+.|+|
T Consensus 88 ~~~~~~~g~~~~l~~~~~------------------------------------------------------~~~~~wsp 113 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN------------------------------------------------------IRSLEWNE 113 (347)
T ss_dssp EEEETTTTEEEEEEEESE------------------------------------------------------EEEEEECT
T ss_pred EEEECCCCceEEEEcCCC------------------------------------------------------ccceeECC
Confidence 666776665433222221 33344555
Q ss_pred CCcEEEEeeC---------------------------CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE
Q 020461 157 LNRTIISAGE---------------------------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209 (326)
Q Consensus 157 ~~~~l~s~~~---------------------------d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 209 (326)
+++.|+.++. ...|.+||+.+++.+..+.. . .+..++|+||| .++++
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~-~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P-RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE----E-TTCEEEEETTE-EEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----C-CcccccCCCCe-EEEEE
Confidence 5554444432 35699999988765333321 2 57789999999 77777
Q ss_pred eCCC-------eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461 210 SLDK-------SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 282 (326)
Q Consensus 210 s~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (326)
+.++ ...+|.+.+++. ..+....... .++|+++.++..+..+.. .......+..++ .++...
T Consensus 188 ~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~~~~~--~~spdg~~l~~~~~~~~~------~~~~~~~l~~~d--~~~~~~ 256 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWEDGKE-EKMFEKVSFY--AVDSDGERILLYGKPEKK------YMSEHNKLYIYD--GKEVMG 256 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEETTEE-EEEEEEESEE--EEEECSSCEEEEECCSSS------CCCSSCEEEEEC--SSCEEE
T ss_pred ecccccccccccccEEEeCCCce-EEeccCccee--eECCCCCEEEEEEccccC------CccccceEEEEC--CCceEe
Confidence 6542 344554444443 3332222233 338898887765433210 000112334444 222222
Q ss_pred cccccCcceeE-EEECCCCceEEeecCCCcEEEeecC
Q 020461 283 GVKGHFGPINA-LAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 283 ~~~~h~~~v~~-v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
...+|...+.. +.|+ |+ .+++++.|+.++|| ++
T Consensus 257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 33456677886 9999 88 89999999999999 87
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=1.8e-14 Score=133.40 Aligned_cols=243 Identities=12% Similarity=-0.065 Sum_probs=148.4
Q ss_pred ecCCceeEEEEccCCCEEE-----eecCCCCeEEEecCCCCeeeeccCcccce--EEEEEcCCCCeEEEEeCCCc-----
Q 020461 8 GHERPLTYLKYNKDGDLLF-----SCAKDHTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSADQT----- 75 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~-----s~~~d~~v~iw~~~~~~~~~~~~~h~~~V--~~~~~~~~~~~l~s~~~d~~----- 75 (326)
+|...+..++|||||++|| +|+.+..|++||+.+++.+. ..+...+ ..++|+||++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4555688999999999998 56667899999999998651 1122222 67899999999999998876
Q ss_pred --------EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461 76 --------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (326)
Q Consensus 76 --------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (326)
|++|++.+++... ..+.....+..
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~------------------------------------------------~lv~~~~~~~~ 227 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKD------------------------------------------------TVVHERTGDPT 227 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGC------------------------------------------------EEEECCCCCTT
T ss_pred ccCCCCCEEEEEECCCCchhc------------------------------------------------eEEEecCCCCE
Confidence 8888876653100 00001112334
Q ss_pred ceeEEEEecCCcEEEEeeCCC----cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe---CCCeEEEeec
Q 020461 148 RINRAVWGPLNRTIISAGEDA----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDA 220 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s---~dg~i~iwd~ 220 (326)
.+..+.|+|+|++|+..+.++ .|.+||..+++.. .+. .+...+....+ ++|..++... .++.|.+||+
T Consensus 228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~---~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV---KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE---ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBT
T ss_pred EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee---cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeC
Confidence 566788999999888777665 6777766554432 221 23333444445 5555444444 2588999999
Q ss_pred CCcce--EEEEee---ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc-CcceeEE
Q 020461 221 RTLEL--IKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINAL 294 (326)
Q Consensus 221 ~~~~~--~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v 294 (326)
.+++. ...+.. ...+..++++ ++.++++...++. ..++.++.. +.....+..+ .+.|..+
T Consensus 303 ~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~-----------~~l~~~~~~-g~~~~~l~~~~~~~v~~~ 368 (695)
T 2bkl_A 303 AKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDAT-----------SEVRVATLK-GKPVRTVQLPGVGAASNL 368 (695)
T ss_dssp TBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTE-----------EEEEEEETT-CCEEEECCCSSSSEECCC
T ss_pred CCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCE-----------EEEEEEeCC-CCeeEEecCCCCeEEEEe
Confidence 87653 233332 2245666665 3445544333321 122333321 1122223333 5678889
Q ss_pred EECCCCceEE----eecCCCcEEEeecCC
Q 020461 295 AFNPDGKSFS----SGGEDGYVRLHHFDP 319 (326)
Q Consensus 295 ~~s~d~~~la----t~s~Dg~i~l~~~~~ 319 (326)
+++||++.++ +....++|.+|++..
T Consensus 369 ~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 369 MGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp BSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 9999998776 334467888888764
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=9.3e-13 Score=110.67 Aligned_cols=239 Identities=15% Similarity=0.019 Sum_probs=157.5
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 91 (326)
....+.++ +++++++...++.|.+||.++++.+.++.. ......++++++++..++...++.|.+||+.+++....+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 34667764 456667777789999999999999888853 4567888998888544444489999999998877554332
Q ss_pred cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcE
Q 020461 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIV 170 (326)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i 170 (326)
.... .+.......+++ ..+..+++.. .+++|
T Consensus 123 ~g~~-----------------------------------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 123 CPDM-----------------------------------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRI 154 (328)
T ss_dssp CTTC-----------------------------------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEE
T ss_pred cCCc-----------------------------------------------cccCCCcceEEE-ECCEEEEEcCCCCCEE
Confidence 1100 000001122333 2233344443 48899
Q ss_pred EEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC----------CeEEEeecCCcceEEEEee--ccceEEE
Q 020461 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD----------KSAKLWDARTLELIKTYVT--ERPVNAV 238 (326)
Q Consensus 171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~--~~~~~~~ 238 (326)
.+||+.+++....+.. ......+.++++|++++++..+ +.|.++|.++++.+..+.. ...++.+
T Consensus 155 ~viD~~t~~~~~~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 155 LKIDTETDKVVDELTI----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp EEEETTTTEEEEEEEC----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred EEEECCCCeEEEEEEc----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 9999998877655432 1235678899999877777655 7899999999988777654 3368999
Q ss_pred EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC-CCceEEee----cCCCcEE
Q 020461 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSG----GEDGYVR 313 (326)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~lat~----s~Dg~i~ 313 (326)
+++|+++.++++.. .+..+|...+.... ...+..+......++++| ++..+++. ..+++|.
T Consensus 231 a~~~d~~~lyv~~~----~v~~~d~~t~~~~~----------~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~ 296 (328)
T 3dsm_A 231 QLNGTRDTLYWINN----DIWRMPVEADRVPV----------RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVY 296 (328)
T ss_dssp EECTTSCEEEEESS----SEEEEETTCSSCCS----------SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEE
T ss_pred EEecCCCEEEEEcc----EEEEEECCCCceee----------eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEE
Confidence 99999998887643 33344443322110 000111134678999999 56666776 6789999
Q ss_pred EeecC
Q 020461 314 LHHFD 318 (326)
Q Consensus 314 l~~~~ 318 (326)
+|+.+
T Consensus 297 v~d~~ 301 (328)
T 3dsm_A 297 RYSPQ 301 (328)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 98776
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=5.9e-12 Score=112.91 Aligned_cols=290 Identities=12% Similarity=0.075 Sum_probs=170.9
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecC--CCCeeeeccCcccceEEEEEc----CCCCeEEEEe-CCCcEEEEEccCC
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVS----RDSMTLITGS-ADQTAKLWNVETG 84 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~--~~~~~~~~~~h~~~V~~~~~~----~~~~~l~s~~-~d~~i~~wd~~~~ 84 (326)
.+..+.|||||+++++++.|+.|.+||+. +++.+.++..... -..++|+ |||+++++++ .+++|.++|..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 45789999999999999999999999995 7888877765443 4678999 6999888777 4599999999998
Q ss_pred cEEEEEecCC------------CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461 85 AQLFTFNFDS------------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (326)
Q Consensus 85 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (326)
+.+..+.... .+..+..++.....++..... ..+.+..... .....+..+ .........
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~----g~v~~vd~~~----~~~~~v~~i-~~~~~~~d~ 347 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET----GKILLVDYTD----LNNLKTTEI-SAERFLHDG 347 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT----TEEEEEETTC----SSEEEEEEE-ECCSSEEEE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC----CeEEEEecCC----Cccceeeee-eccccccCc
Confidence 8877654321 111222222222111111100 0111111000 000011111 112345567
Q ss_pred EEecCCcEEEEee-CCCcEEEEECCCCcccccccc--ccCcceeeEEEEEcCCCCeE-EEEe-CCCeEEEeecCC-----
Q 020461 153 VWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHF-LTGS-LDKSAKLWDART----- 222 (326)
Q Consensus 153 ~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~--~~~h~~~v~~v~~s~~~~~l-~s~s-~dg~i~iwd~~~----- 222 (326)
.|+|++++++++. .++.|.++|+.+++....+.. ...|......+ ++|++..+ +++. .+++|.++|..+
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~ 426 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD 426 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc
Confidence 8999999876654 588999999999887655432 12343222222 57774444 4443 468999999987
Q ss_pred --cceEEEEeeccc-eEEEEeCCCCCeeEEecC--CC---cceeEeecccCcee---eeEeecccceeeec---cccccC
Q 020461 223 --LELIKTYVTERP-VNAVTMSPLLDHVVLGGG--QD---ASAVTTTDHRAGKF---EAKFFDKILQEEIG---GVKGHF 288 (326)
Q Consensus 223 --~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~--~~---~~~~~~~d~~~~~~---~~~~~~~~~~~~~~---~~~~h~ 288 (326)
.+.++++..... ...+..+|++..+++... .+ ...+..+|...... .. .+.. .++. .+..-.
T Consensus 427 ~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~-~~~~---~~~~~~~~~~~~~ 502 (567)
T 1qks_A 427 NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP-EFKT---LPIAEWAGITEGQ 502 (567)
T ss_dssp TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC-CEEE---ECHHHHHTCCSSC
T ss_pred ccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCC-CcEE---eccccccccCCCC
Confidence 567777765432 245778999999887642 12 22344444332200 00 0000 0001 111112
Q ss_pred cceeEEEECCCCceEEeec-----CCCcEEEee
Q 020461 289 GPINALAFNPDGKSFSSGG-----EDGYVRLHH 316 (326)
Q Consensus 289 ~~v~~v~~s~d~~~lat~s-----~Dg~i~l~~ 316 (326)
..+..+.|+|+|+.+..+. .++.|.+.+
T Consensus 503 ~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 503 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred cceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 4688999999999865543 378898844
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=8e-13 Score=111.77 Aligned_cols=210 Identities=10% Similarity=0.010 Sum_probs=133.8
Q ss_pred CceeEEEEccCCCEEEeecCC---C--CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC------------
Q 020461 11 RPLTYLKYNKDGDLLFSCAKD---H--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD------------ 73 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d---~--~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d------------ 73 (326)
..+..++|||||++|+.++.+ + .|.+|++.+++....... .. +..++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 346789999999999887754 2 377778888776544433 33 9999999999988877642
Q ss_pred ---------------CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCcccee-ce-eeeeeeeccCCCCCCC
Q 020461 74 ---------------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-NS-AIHVKRIARDPADQGG 136 (326)
Q Consensus 74 ---------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 136 (326)
..|.+||+.+++.+..+..+ ....+.++++. +++......... .. ...++.+. ++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d------~~ 208 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE------DG 208 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE------TT
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC------CC
Confidence 56889999888763333323 56677788777 554442210000 00 11222221 12
Q ss_pred ceEEEeccCccceeEEEEecCCcEEEEeeCC--------CcEEEEECCCCccccccccccCcceeeEE-EEEcCCCCeEE
Q 020461 137 ESVLILKGPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTETGKLLKESDKETGHKKTITS-LAKAADGSHFL 207 (326)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~~~l~ 207 (326)
+. ..+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++... + ..+|...+.. +.|+ ++ .++
T Consensus 209 ~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l--~~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 209 KE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG-I--LDEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp EE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE-S--STTCCSEEEEEEEET-TE-EEE
T ss_pred ce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe-c--cccCCcccCCccEEc-Cc-EEE
Confidence 22 222223 344443 9999988777654 3677888 444322 2 1245667776 8999 88 899
Q ss_pred EEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461 208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (326)
Q Consensus 208 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~ 242 (326)
+++.++.+++| +.+++..........+..++++|
T Consensus 278 ~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence 99999999999 87666544333455688888988
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=6.9e-11 Score=97.45 Aligned_cols=273 Identities=10% Similarity=0.078 Sum_probs=167.2
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee-eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 84 (326)
+..+...+.+++++++|+++++...++.|.+|+.. ++... ....+...+..+++++++++.++...++.|..||.+ +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 34455678999999999988887778899999987 55432 223345678999999999887777778889999986 3
Q ss_pred cEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCce-EEEeccCccceeEEEEecCCcE
Q 020461 85 AQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES-VLILKGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 85 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ 160 (326)
+. ..+... .....+.+.+++.+.+..... ..+.... . .+.. ..........+..+++++++..
T Consensus 88 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d----~---~g~~~~~~~~~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 88 II-KEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----NRIGRIT----D---DGKIREYELPNKGSYPSFITLGSDNAL 154 (299)
T ss_dssp CE-EEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEEC----T---TCCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred cE-EEEeCCCcCCCceeeEECCCCCEEEEecCC-----ceEEEEC----C---CCCEEEecCCCCCCCCceEEEcCCCCE
Confidence 32 223221 223344455555554443211 0111111 1 1111 1122233456788999999988
Q ss_pred EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---cceEE
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVNA 237 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~ 237 (326)
+++...++.|..||. +++... +. .......+..++++++|...++...++.|..||. +++.. .+... ..+.+
T Consensus 155 ~v~~~~~~~i~~~~~-~g~~~~-~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~ 229 (299)
T 2z2n_A 155 WFTENQNNAIGRITE-SGDITE-FK-IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHA 229 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEE-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEE
T ss_pred EEEeCCCCEEEEEcC-CCcEEE-ee-CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCcee
Confidence 777777889999998 555432 11 1123455789999999987777777889999999 66543 33222 45788
Q ss_pred EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 313 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~ 313 (326)
+++++++. ++++...+. .+..+|. .+.+ ..+. ...+...+.++++ ++|.++++.+.++.++
T Consensus 230 i~~~~~g~-l~v~~~~~~-~i~~~d~-~g~~--~~~~---------~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 230 ITAGAGID-LWFTEWGAN-KIGRLTS-NNII--EEYP---------IQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp EEECSTTC-EEEEETTTT-EEEEEET-TTEE--EEEE---------CSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred EEECCCCC-EEEeccCCc-eEEEECC-CCce--EEEe---------CCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 99999876 444432211 2223332 1111 1110 1233456899999 9998887766443333
No 186
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=5.8e-12 Score=104.85 Aligned_cols=246 Identities=11% Similarity=0.101 Sum_probs=149.1
Q ss_pred eeeecCCceeEEEEccCCCEEEe-------ecCCCCeEEEecCCCCeeeecc----CcccceEEEEEcCC-CCeEEEEeC
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFS-------CAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRD-SMTLITGSA 72 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s-------~~~d~~v~iw~~~~~~~~~~~~----~h~~~V~~~~~~~~-~~~l~s~~~ 72 (326)
.+........+++|+++++++++ ...++.|.+|+..+++...... ++...+.+++++++ ++++++ +.
T Consensus 12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~ 90 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DM 90 (314)
T ss_dssp EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ET
T ss_pred hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-EC
Confidence 33444556789999999998888 6778899999988877643221 25567889999998 664444 44
Q ss_pred CCcEEEEEccCCcEEEE-EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461 73 DQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (326)
Q Consensus 73 d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (326)
...|.+||.+ ++.... .... . ..+...+..
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~-----------------------------------------~-------~~~~~~~~~ 121 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDS-----------------------------------------E-------GRRMQGCND 121 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCT-----------------------------------------T-------SCBCBCCCE
T ss_pred CCCEEEEeCC-CCEEEEEeccC-----------------------------------------C-------CccccCCcC
Confidence 4468888887 543211 0000 0 001134566
Q ss_pred EEEecCCcEEEEeeCC---------------CcEEEEECCCCccccccccccCcceeeEEEEEc----CCCCeEEE-EeC
Q 020461 152 AVWGPLNRTIISAGED---------------AIVRIWDTETGKLLKESDKETGHKKTITSLAKA----ADGSHFLT-GSL 211 (326)
Q Consensus 152 ~~~~~~~~~l~s~~~d---------------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~~~l~s-~s~ 211 (326)
++++|++..+++...+ +.|..||.. ++..... .+......++++ +++..+.. ...
T Consensus 122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----~~~~~~~~i~~~~~~d~dg~~l~v~~~~ 196 (314)
T 1pjx_A 122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD----TAFQFPNGIAVRHMNDGRPYQLIVAETP 196 (314)
T ss_dssp EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE----EEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec----cCCCCcceEEEecccCCCCCEEEEEECC
Confidence 7888888777666554 567777765 4332211 122345778889 99876554 456
Q ss_pred CCeEEEeecC-Ccce-----EEEEeec--cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461 212 DKSAKLWDAR-TLEL-----IKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283 (326)
Q Consensus 212 dg~i~iwd~~-~~~~-----~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (326)
++.|.+||.+ +++. ...+... ..+..+++++++...+...+.. .+..+|... ++.+..
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~--~i~~~d~~~------------g~~~~~ 262 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS--HIEVFGPDG------------GQPKMR 262 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT--EEEEECTTC------------BSCSEE
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC--EEEEEcCCC------------CcEeEE
Confidence 8899999986 3432 1111111 3467888898875444432222 122233221 111222
Q ss_pred ccccCcceeEEEECCCCc-eEEeecCCCcEEEeecCC
Q 020461 284 VKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 284 ~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~ 319 (326)
+..+...+.+++|+|+|+ ++++...++.|..|+.+.
T Consensus 263 ~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 263 IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 233446789999999999 556666678888877664
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=8.9e-14 Score=119.66 Aligned_cols=225 Identities=11% Similarity=-0.014 Sum_probs=139.7
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEE-------------------EEEcCCCCeEEEE-----
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-------------------CDVSRDSMTLITG----- 70 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~-------------------~~~~~~~~~l~s~----- 70 (326)
.+.|||||++|+.++.++.+++|++.+++....+..+.+.... ++|+|+++.++.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 3789999999999999999999999988766555544443222 3467777766544
Q ss_pred eCCCcEEEEEccCCcEEEEEecCCCcceeeeec-CCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC--c
Q 020461 71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--Q 146 (326)
Q Consensus 71 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 146 (326)
..+..|.+||+.+++.............+.+++ ++. ++.+...........+...... ++. ...+..+ .
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------~~~-~~~l~~~~~~ 237 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED------GSN-VRKIKEHAEG 237 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT------SCC-CEESSCCCTT
T ss_pred CCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC------CCc-eeEeeccCCC
Confidence 456789999999887765555455566677887 444 4443322110000111111110 111 1222222 2
Q ss_pred cceeEEEEecCCcEEEEeeCC-----CcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEe----------
Q 020461 147 GRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS---------- 210 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s---------- 210 (326)
..+..+.|+|+++.|+.++.+ +.|.+||+.+++.... ....+ .. +.|+| ||.++++++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EECCS----EE-EEEECSSSSEEEEEECCC-------
T ss_pred ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeCCC----CC-CCccCCCCceEEEecCCcceeeccc
Confidence 357788999999987766544 4499999987764321 11111 22 78999 999888765
Q ss_pred ------CCCeEEEeecCCcceEEEEeecc-----------ceEEEEeCCCCCeeEEecC
Q 020461 211 ------LDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 211 ------~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~~~~~~ 252 (326)
.+..|++||+.+++...-..... .....+|+|+++.++.+..
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 34789999998876533222222 1455789999988776543
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=6.3e-13 Score=123.09 Aligned_cols=236 Identities=10% Similarity=0.047 Sum_probs=144.8
Q ss_pred ccCCCEEEeecCCC---CeEEEec--CCCCeeeec------cCcccceEEEEEcCCCCeEE-----EEeCCCcEEEEEcc
Q 020461 19 NKDGDLLFSCAKDH---TPTVWFA--DNGERLGTY------RGHNGAVWCCDVSRDSMTLI-----TGSADQTAKLWNVE 82 (326)
Q Consensus 19 s~~~~~l~s~~~d~---~v~iw~~--~~~~~~~~~------~~h~~~V~~~~~~~~~~~l~-----s~~~d~~i~~wd~~ 82 (326)
+|+|++++-...++ .-.||.. ..++....+ .+|...+..++|||||++|+ +|+.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 48898877665543 3456643 344322222 24666789999999999887 45556789999998
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
+++.+. ... +.. .....++|+|+++.|+
T Consensus 156 tg~~~~----~~~----------------------------------------------~~~--~~~~~~~wspDg~~l~ 183 (695)
T 2bkl_A 156 SGEWSK----VDV----------------------------------------------IEG--GKYATPKWTPDSKGFY 183 (695)
T ss_dssp TCCBCS----SCC----------------------------------------------BSC--CTTCCCEECTTSSEEE
T ss_pred CCCCcC----Ccc----------------------------------------------cCc--ccccceEEecCCCEEE
Confidence 875310 000 000 0013467999999999
Q ss_pred EeeCCCc-------------EEEEECCCCcccc-ccccccCcceeeEEEEEcCCCCeEEEEeCCC----eEEEeecCCcc
Q 020461 163 SAGEDAI-------------VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTLE 224 (326)
Q Consensus 163 s~~~d~~-------------i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg----~i~iwd~~~~~ 224 (326)
.++.|.. |++|++.+++... .+....+|...+..+.++|||++|+.++.++ .|++||..+++
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 8888776 9999998776321 1222234556788999999999999888766 67778766554
Q ss_pred eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee--ecccccc--CcceeEEEECCCC
Q 020461 225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE--IGGVKGH--FGPINALAFNPDG 300 (326)
Q Consensus 225 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~h--~~~v~~v~~s~d~ 300 (326)
...-...........+ ++++ +++....+. ....+..++...+.. ...+..| ...+..++|+ ++
T Consensus 264 ~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~----------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 264 FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGA----------PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp CEEEEECSSCCEEEEE-ETTE-EEEEECTTC----------TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred eEEeecCCCceEEEEe-cCCc-EEEEECCCC----------CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 4332222333334444 5555 544432211 112333344322211 1112222 3457889998 78
Q ss_pred ceEEeecCCCcEEEeecCC
Q 020461 301 KSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 301 ~~lat~s~Dg~i~l~~~~~ 319 (326)
.++++...|+..+||.++.
T Consensus 331 ~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 331 HLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp EEEEEEEETTEEEEEEEET
T ss_pred EEEEEEEECCEEEEEEEeC
Confidence 8899999999999998874
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=6.5e-13 Score=123.33 Aligned_cols=237 Identities=11% Similarity=-0.024 Sum_probs=145.5
Q ss_pred cCCCEEEeecCC-CC--eEEEec--CCCCeeee-----c-cCcccceEEEEEcCCCCeEEEEeCCC-----cEEEEEccC
Q 020461 20 KDGDLLFSCAKD-HT--PTVWFA--DNGERLGT-----Y-RGHNGAVWCCDVSRDSMTLITGSADQ-----TAKLWNVET 83 (326)
Q Consensus 20 ~~~~~l~s~~~d-~~--v~iw~~--~~~~~~~~-----~-~~h~~~V~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~ 83 (326)
|+|++++-...+ +. -.+|.. .+++.... + .+|...+..++|||||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 888877654322 21 245543 33432211 1 23555788999999999888766543 899999988
Q ss_pred CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
++...... . ...+..++|+|+++.|+.
T Consensus 161 g~~~~~~~---------------------------------------------------~--~~~~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 161 AKELPDVL---------------------------------------------------E--RVKFSCMAWTHDGKGMFY 187 (710)
T ss_dssp TEEEEEEE---------------------------------------------------E--EECSCCEEECTTSSEEEE
T ss_pred CCCCcccc---------------------------------------------------c--CcccceEEEEeCCCEEEE
Confidence 76532100 0 001334678999988888
Q ss_pred eeCCCc----------------EEEEECCCCcccc-ccccccCcceeeEEEEEcCCCCeEEEEeC-----CCeEEEeecC
Q 020461 164 AGEDAI----------------VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDAR 221 (326)
Q Consensus 164 ~~~d~~----------------i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-----dg~i~iwd~~ 221 (326)
++.++. |++|++.+++... .+.....|...+..+.++|||++|+.++. +..|++||+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence 777765 9999998765321 11122234555788999999999987765 5689999998
Q ss_pred C------cc-eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee--eeccccccCc--c
Q 020461 222 T------LE-LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE--EIGGVKGHFG--P 290 (326)
Q Consensus 222 ~------~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~h~~--~ 290 (326)
+ +. ....+..........++++++.+++.+..+. ....+..++..... ....+..|.. .
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~----------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 268 QESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHS----------PNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTC----------TTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred ccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCC----------CCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 6 43 3444443322223357788887776544322 11123333322211 1122333433 6
Q ss_pred eeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 291 INALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 291 v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+..++|++++.++++...|+..+||.++.
T Consensus 338 ~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred EEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 78899998888999999999877776654
No 190
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.54 E-value=3.2e-12 Score=107.48 Aligned_cols=197 Identities=11% Similarity=0.106 Sum_probs=136.4
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-eeeec---------cCcccceEEEEEcC-CCCeEEEEe-CCCcE
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTY---------RGHNGAVWCCDVSR-DSMTLITGS-ADQTA 76 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-~~~~~---------~~h~~~V~~~~~~~-~~~~l~s~~-~d~~i 76 (326)
+......++++|+|+++++...++.|++|+..... .+..+ .++-.....++++| +++++++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 34467899999999999999999999999975442 44444 34445688999999 787777776 68999
Q ss_pred EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
++||. +++.+..+..... . . . ...++......++++|
T Consensus 169 ~~~~~-~g~~~~~~~~~g~-----------------~----------------~---~------~~~~~~~~p~gia~d~ 205 (329)
T 3fvz_A 169 VQFSP-SGKFVTQWGEESS-----------------G----------------S---S------PRPGQFSVPHSLALVP 205 (329)
T ss_dssp EEECT-TSCEEEEECEECC-----------------S----------------S---S------CCTTEESCEEEEEEET
T ss_pred EEEcC-CCCEEEEeccCCC-----------------C----------------C---C------CCCcccCCCcEEEEEC
Confidence 99994 4544433211000 0 0 0 0011223456789999
Q ss_pred C-CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC------CCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461 157 L-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA------DGSHFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 157 ~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~------~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
+ +.++++...+++|++||..+++.+..+.. ..+...+.+++++| +|...++.+.+..|++||..+++.+..+
T Consensus 206 ~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 206 HLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp TTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 8 67777888899999999988877765532 24556678888888 4443344445568999999999998887
Q ss_pred e----eccceEEEEeCCCCCeeEEe
Q 020461 230 V----TERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 230 ~----~~~~~~~~~~s~~~~~~~~~ 250 (326)
. ....+..++++|++ .++++
T Consensus 285 ~~~~~~~~~p~~ia~~~dG-~lyva 308 (329)
T 3fvz_A 285 KPVRKHFDMPHDIVASEDG-TVYIG 308 (329)
T ss_dssp CCSSSCCSSEEEEEECTTS-EEEEE
T ss_pred cCCCCccCCeeEEEECCCC-CEEEE
Confidence 4 23458899999998 45544
No 191
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.53 E-value=1.9e-12 Score=120.80 Aligned_cols=243 Identities=16% Similarity=0.059 Sum_probs=141.2
Q ss_pred cCCceeEEEEccCCCEEEeecCC-----CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCc--------
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT-------- 75 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d-----~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~-------- 75 (326)
|...+..++|||||++|+.++.+ ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 43467889999999998876654 4599999999987643 112222467899999 98888887664
Q ss_pred ------EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccce
Q 020461 76 ------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (326)
Q Consensus 76 ------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (326)
|.+|++.++... ...+.....+...+
T Consensus 239 ~~~~~~v~~~~lgt~~~~------------------------------------------------~~lv~~~~~~~~~~ 270 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSA------------------------------------------------DQPVFATPELPKRG 270 (741)
T ss_dssp CCCCCEEEEEETTSCGGG------------------------------------------------CEEEECCTTCTTCE
T ss_pred CCCCCEEEEEECCCCchh------------------------------------------------CEEEeccCCCCeEE
Confidence 444444332100 00011111222346
Q ss_pred eEEEEecCCcEEEEeeCCC-----cEEEEECCCC--ccccccccccCcceeeEEEEEcCCCCeEEEEeCC----CeEEEe
Q 020461 150 NRAVWGPLNRTIISAGEDA-----IVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLW 218 (326)
Q Consensus 150 ~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d----g~i~iw 218 (326)
..+.|+|+|++|+..+.++ .|.+||+.++ +....+. .+....... ++++|..|+..+.+ +.|.+|
T Consensus 271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence 7788999999888766544 7999999776 3122222 222223333 34888888877764 459999
Q ss_pred ecCCcc-eEEEEeec--cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc-cCcceeEE
Q 020461 219 DARTLE-LIKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINAL 294 (326)
Q Consensus 219 d~~~~~-~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v 294 (326)
|+.+++ ....+... ..+..++++ ++.+++....++ ...++.++.. +.....+.. +.+.|..+
T Consensus 347 d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg-----------~~~l~~~~~~-g~~~~~l~~~~~~~v~~~ 412 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDA-----------KSQVLAFDLD-GKPAGAVSLPGIGSASGL 412 (741)
T ss_dssp ECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETT-----------EEEEEEEETT-SCEEEECBCSSSCEEEEE
T ss_pred eCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECC-----------EEEEEEEeCC-CCceeeccCCCCeEEEEe
Confidence 998752 33333322 224444444 444544433332 1123333321 112222332 35678899
Q ss_pred EECCCCceEE----eecCCCcEEEeecCC
Q 020461 295 AFNPDGKSFS----SGGEDGYVRLHHFDP 319 (326)
Q Consensus 295 ~~s~d~~~la----t~s~Dg~i~l~~~~~ 319 (326)
+++||++.|+ +....++|.+|++..
T Consensus 413 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 413 SGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp ECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 9999998665 334457888887654
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=3e-11 Score=108.32 Aligned_cols=283 Identities=12% Similarity=0.073 Sum_probs=172.6
Q ss_pred ccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc--CCcEEEEEecCCCc
Q 020461 19 NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE--TGAQLFTFNFDSPA 96 (326)
Q Consensus 19 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~ 96 (326)
+|.+.++++...+++|.++|..+++.+.++.... .+..+.|+||++++++++.|+.|.+||+. +++.+..+......
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P 242 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 242 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC
Confidence 3545678888899999999999999988886433 46689999999999999999999999995 77777666554445
Q ss_pred ceeeee----cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc----------C-ccceeEEEEecCCc-E
Q 020461 97 RSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNR-T 160 (326)
Q Consensus 97 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~-~ 160 (326)
..+.++ ++++.+++.... ...+.+.+. ...+.+..+.. | ...+..+..++++. +
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~----~~~v~ViD~------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~ 312 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYW----PPQYVIMDG------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 312 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEE----TTEEEEEET------TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred ceeEEccccCCCCCEEEEEEcc----CCeEEEEEC------CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence 567777 455554443321 111111111 11222222211 1 22567778888765 4
Q ss_pred EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcceEEEEee-cc---ce
Q 020461 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT-ER---PV 235 (326)
Q Consensus 161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~~---~~ 235 (326)
++....+|.|.++|..+.+...... .........+.|+|+|+++++++ .++.|.++|.++++.+..+.. .. +.
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~--i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred EEEecCCCeEEEEecCCCccceeee--eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 5566778999999987643322111 11223456788999999987666 578999999999998877765 22 21
Q ss_pred EEEE-eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC------
Q 020461 236 NAVT-MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE------ 308 (326)
Q Consensus 236 ~~~~-~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~------ 308 (326)
.... ++|++..+++++..+...+...|.........-|. .+..+......-..|.++|++++|.....
T Consensus 391 ~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k-----vv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 391 RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK-----ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS-----EEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE-----EEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 2333 57776666654422222233333322110000011 11112211122245788999998876553
Q ss_pred -CCcEEEeecCC
Q 020461 309 -DGYVRLHHFDP 319 (326)
Q Consensus 309 -Dg~i~l~~~~~ 319 (326)
.++|.+++...
T Consensus 466 ~~~~v~v~d~~~ 477 (567)
T 1qks_A 466 ISGSVAVFDIKA 477 (567)
T ss_dssp HHTCEEEEEGGG
T ss_pred cCceEEEEECCc
Confidence 46899987764
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=2.9e-11 Score=98.81 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=133.1
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEEEeC-CCcEEEEEccCCcEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQLF 88 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~ 88 (326)
..+.++.++|+|++|+ +.++.|..||. +++.+-.+..+. ..+.++.+.++++.+++.+. ++.|..+|. +++.+.
T Consensus 37 ~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~ 112 (276)
T 3no2_A 37 WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS 112 (276)
T ss_dssp CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE
T ss_pred CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE
Confidence 3578899999999988 34778999998 898888887653 47889999999999998887 676766665 566554
Q ss_pred EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~ 168 (326)
.+...... .++......+...+++.++++...++
T Consensus 113 ~~~~~~~~----------------------------------------------~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 113 KTEFETGI----------------------------------------------ERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EEEECCSC----------------------------------------------SSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred EEeccCCC----------------------------------------------CcccccccCceECCCCCEEEEecCCC
Confidence 43221000 01111223345678899999999999
Q ss_pred cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-------ceEEEEeC
Q 020461 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-------PVNAVTMS 241 (326)
Q Consensus 169 ~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~s 241 (326)
.|..||.+ |+.+.++... ....++...++|..+++++.++.|..+|.++++.+.++.... .+..++..
T Consensus 147 ~v~~~d~~-G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 147 EVREIAPN-GQLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp EEEEECTT-SCEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred EEEEECCC-CCEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc
Confidence 99999998 8776655321 235567778999999999999999999999999998886321 15566666
Q ss_pred CCCCeeEE
Q 020461 242 PLLDHVVL 249 (326)
Q Consensus 242 ~~~~~~~~ 249 (326)
+++..++.
T Consensus 222 ~~G~i~v~ 229 (276)
T 3no2_A 222 QNGGLYIC 229 (276)
T ss_dssp TTSCEEEE
T ss_pred CCCCEEEE
Confidence 66655544
No 194
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.49 E-value=2.4e-11 Score=99.80 Aligned_cols=185 Identities=12% Similarity=0.159 Sum_probs=130.0
Q ss_pred cCCceeEEEE-ccCCCEEEeecC-CCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 9 HERPLTYLKY-NKDGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 9 h~~~i~~~~~-s~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
|...+..+++ .++++++++... ++.|++|+ .+++.+..+.. +...+..++++++++++++...++.|.+||.. ++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence 3456789999 577887777643 88999999 67777666643 44568899999999888877788899999864 33
Q ss_pred EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
.+..+.. .++...+..++++|++..+++..
T Consensus 153 ~~~~~~~--------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 153 VLHKFGC--------------------------------------------------SKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EEEEEEC--------------------------------------------------TTTCSSEEEEEECSSSEEEEEEG
T ss_pred EEEEeCC--------------------------------------------------CCccCCcEEEEECCCCCEEEEEC
Confidence 2211100 01223456788999988888878
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC-eEEEeecCCcceEEEEeecc---ceEEEEeC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTER---PVNAVTMS 241 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~---~~~~~~~s 241 (326)
.++.|++||.. ++.+..+.. .++...+..++++++|..+++...++ .|++||. +++.+..+.... .+..++++
T Consensus 183 ~~~~i~~~~~~-g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~ 259 (286)
T 1q7f_A 183 RAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM 259 (286)
T ss_dssp GGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred CCCEEEEEcCC-CCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence 89999999974 444433321 23335678999999998888888776 9999996 456666665322 36688999
Q ss_pred CCCCeeE
Q 020461 242 PLLDHVV 248 (326)
Q Consensus 242 ~~~~~~~ 248 (326)
|++..++
T Consensus 260 ~~g~l~v 266 (286)
T 1q7f_A 260 DDGSVVL 266 (286)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 9876433
No 195
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=2.1e-12 Score=109.67 Aligned_cols=170 Identities=12% Similarity=0.012 Sum_probs=121.9
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCC---------eee-eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---------RLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---------~~~-~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
+++.+++++...++++|+.++ +++|++++.+ ... ....+.. |..++| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 588999999999999999984 5569865433 111 1223566 999999 88899888 8899999998
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
.+-....... .+...+.++.+.+ ..+
T Consensus 114 ~sl~~~~~~~----------------------------------------------------~~~~~v~~i~~~~--p~~ 139 (388)
T 1xip_A 114 EELSEFRTVT----------------------------------------------------SFEKPVFQLKNVN--NTL 139 (388)
T ss_dssp SSTTCEEEEE----------------------------------------------------ECSSCEEEEEECS--SEE
T ss_pred hhhhccCccc----------------------------------------------------eeecceeeEEecC--CCE
Confidence 7643221110 0111122222222 238
Q ss_pred EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEEEe---------
Q 020461 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYV--------- 230 (326)
Q Consensus 162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~--------- 230 (326)
+.+..||.|.+||++++.... +...|++++|||+| ++.|..||++++|+...+++ ...+.
T Consensus 140 av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~ 210 (388)
T 1xip_A 140 VILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP 210 (388)
T ss_dssp EEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSC
T ss_pred EEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccccccc
Confidence 889999999999998776532 45679999999999 78899999999999988775 45551
Q ss_pred -eccceEEEEeCCCCCeeEE
Q 020461 231 -TERPVNAVTMSPLLDHVVL 249 (326)
Q Consensus 231 -~~~~~~~~~~s~~~~~~~~ 249 (326)
+...+.++.|.+.+..+++
T Consensus 211 ~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 211 VEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TTTSEEEEEEESSSSEEEEE
T ss_pred CCCeeEEEEEEecCCeEEEE
Confidence 2456889999998777665
No 196
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=2.1e-10 Score=99.19 Aligned_cols=254 Identities=9% Similarity=0.012 Sum_probs=151.0
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCC--cEEEEEccCCcEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLF 88 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~ 88 (326)
.....++|+++++++++...++.|++|+.+++.......... ... ++|+++++.|+++..++ .|.+|+..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 457899999999988888888999999998776654443322 233 89999999998888866 67777765443211
Q ss_pred EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~ 168 (326)
.+. .. .......+..++++|++..|+.+..++
T Consensus 209 ~~g----------------------------------~~--------------~~~~~~~p~~iav~p~~g~lyv~d~~~ 240 (409)
T 3hrp_A 209 RIG----------------------------------QL--------------GSTFSGKIGAVALDETEEWLYFVDSNK 240 (409)
T ss_dssp EEE----------------------------------EC--------------CTTSCSCCCBCEECTTSSEEEEECTTC
T ss_pred Eee----------------------------------ec--------------cchhcCCcEEEEEeCCCCeEEEEECCC
Confidence 110 00 000123345678889655555577788
Q ss_pred cEEEEECCCCccccccc--cccCcceee-E-EEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEeec-----------
Q 020461 169 IVRIWDTETGKLLKESD--KETGHKKTI-T-SLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTE----------- 232 (326)
Q Consensus 169 ~i~~wd~~~~~~~~~~~--~~~~h~~~v-~-~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----------- 232 (326)
.|..||..++... .+. ...++...- . .++++|+ +..+++...++.|+.|+.... +..+...
T Consensus 241 ~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~ 317 (409)
T 3hrp_A 241 NFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLR 317 (409)
T ss_dssp EEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEG
T ss_pred cEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcc
Confidence 9999999866432 110 011122222 3 8999995 666667777889999997643 2222211
Q ss_pred -----cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeee-ccccccCcceeEEEECCCCceEEe
Q 020461 233 -----RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEI-GGVKGHFGPINALAFNPDGKSFSS 305 (326)
Q Consensus 233 -----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~-~~~~~h~~~v~~v~~s~d~~~lat 305 (326)
..+..+++++++. ++++.......+..++...+......-.... +..- ............|+++|+|.++++
T Consensus 318 ~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa 396 (409)
T 3hrp_A 318 EEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA 396 (409)
T ss_dssp GGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred cccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence 2378899999987 4444320222233333222221110000000 0000 000011235789999999999999
Q ss_pred ecCCCcEEEeecC
Q 020461 306 GGEDGYVRLHHFD 318 (326)
Q Consensus 306 ~s~Dg~i~l~~~~ 318 (326)
-..+++|+-+.++
T Consensus 397 d~~n~~Ir~i~~e 409 (409)
T 3hrp_A 397 EAWGKAIRKYAVE 409 (409)
T ss_dssp ESTTCEEEEEEEC
T ss_pred ECCCCeEEEEEeC
Confidence 9999999887653
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=2.4e-09 Score=88.11 Aligned_cols=274 Identities=11% Similarity=0.104 Sum_probs=165.2
Q ss_pred cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee-eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
....+.+++++++|+++++...++.|.+|+.. ++... .+..+...+..+++.+++++.++...++.|..||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 45578899999999988888888999999977 55432 233344578899999999877776667889999987 5543
Q ss_pred EEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceE-EEeccCccceeEEEEecCCcEEEE
Q 020461 88 FTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRTIIS 163 (326)
Q Consensus 88 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s 163 (326)
.+... .....+.+.+++.+.+..... ..+ ..+. . . +... .........+..++++++++.+++
T Consensus 96 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i--~~~~--~--~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 162 (300)
T 2qc5_A 96 -EYPLPQPDSGPYGITEGLNGDIWFTQLNG-----DRI--GKLT--A--D-GTIYEYDLPNKGSYPAFITLGSDNALWFT 162 (300)
T ss_dssp -EEECSSTTCCEEEEEECSTTCEEEEETTT-----TEE--EEEC--T--T-SCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred -EecCCCCCCCCccceECCCCCEEEEccCC-----CeE--EEEC--C--C-CCEEEccCCCCCCCceeEEECCCCCEEEE
Confidence 23221 223344444445554443211 011 1111 1 0 1111 112233456788999999997777
Q ss_pred eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee--ccceEEEEeC
Q 020461 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMS 241 (326)
Q Consensus 164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~s 241 (326)
...++.|..+|. +++... +. ...+...+..++++++|...++....+.|..||. +++....... ...+.+++++
T Consensus 163 ~~~~~~i~~~~~-~g~~~~-~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 238 (300)
T 2qc5_A 163 ENQNNSIGRITN-TGKLEE-YP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG 238 (300)
T ss_dssp ETTTTEEEEECT-TCCEEE-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred ecCCCeEEEECC-CCcEEE-ee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence 666888999998 454332 21 1123456789999999987777667788999998 4444332111 2457788999
Q ss_pred CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+++. ++++..... .+..+|. .+... .+. +......+.+++++++|.++++.. . +|+.++|
T Consensus 239 ~~g~-l~v~~~~~~-~i~~~~~-~g~~~--~~~---------~~~~~~~~~~i~~~~~g~l~v~~~-~---~i~~~~p 298 (300)
T 2qc5_A 239 KNSE-IWFTEWGAN-QIGRITN-DNTIQ--EYQ---------LQTENAEPHGITFGKDGSVWFALK-C---KIGKLNL 298 (300)
T ss_dssp STTC-EEEEETTTT-EEEEECT-TSCEE--EEE---------CCSTTCCCCCEEECTTSCEEEECS-S---EEEEEEE
T ss_pred CCCC-EEEeccCCC-eEEEECC-CCcEE--EEE---------CCccCCccceeEeCCCCCEEEEcc-C---ceEEeCC
Confidence 8876 444332211 2233332 12111 110 112234578999999998777555 3 5555554
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.45 E-value=1.3e-10 Score=97.52 Aligned_cols=219 Identities=9% Similarity=-0.027 Sum_probs=141.4
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcc-----cceEEEEEcCCCCeEEEEe--CCCcEEEEEcc
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-----GAVWCCDVSRDSMTLITGS--ADQTAKLWNVE 82 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-----~~V~~~~~~~~~~~l~s~~--~d~~i~~wd~~ 82 (326)
......++++++++++++...++.|.+||.++++....+.... .....+++ ++..++.+. .+++|.++|+.
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETT
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECC
Confidence 3557899999999766666588999999999998776665322 14456666 344555555 48899999999
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCcccee-----ceeeeeeeeccCCCCCCCceEEEeccC-ccceeEEEEec
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-----NSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGP 156 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 156 (326)
+++.+..+........+.+.+++++.++........ ...+...+. .+++....+.-+ ......++++|
T Consensus 161 t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~------~t~~v~~~~~~~~g~~p~~la~~~ 234 (328)
T 3dsm_A 161 TDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA------ETFTVEKQFKFKLGDWPSEVQLNG 234 (328)
T ss_dssp TTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET------TTTEEEEEEECCTTCCCEEEEECT
T ss_pred CCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC------CCCeEEEEEecCCCCCceeEEEec
Confidence 998877776554556667777777666544321100 011221111 112222233221 23578899999
Q ss_pred CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEE----eCCCeEEEeecCCcceEEEEee
Q 020461 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTG----SLDKSAKLWDARTLELIKTYVT 231 (326)
Q Consensus 157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~ 231 (326)
+++.++.+.. .|.+||..+++...... ..........++++| ++...++. ..++.|.+||.. ++.+.++..
T Consensus 235 d~~~lyv~~~--~v~~~d~~t~~~~~~~~-~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 235 TRDTLYWINN--DIWRMPVEADRVPVRPF-LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp TSCEEEEESS--SEEEEETTCSSCCSSCS-BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred CCCEEEEEcc--EEEEEECCCCceeeeee-ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 9998877654 89999998877532111 111135678899999 55555665 578999999998 888888765
Q ss_pred ccceEEEEe
Q 020461 232 ERPVNAVTM 240 (326)
Q Consensus 232 ~~~~~~~~~ 240 (326)
......++|
T Consensus 311 G~~P~~~~~ 319 (328)
T 3dsm_A 311 GIIPGAFCW 319 (328)
T ss_dssp EESEEEEEE
T ss_pred ccCcceEEE
Confidence 544444443
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=6.1e-10 Score=92.06 Aligned_cols=236 Identities=10% Similarity=-0.004 Sum_probs=148.9
Q ss_pred eecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 7 KGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 7 ~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
..+..-..+..|+++ +.++++...++.|..|+..+++.. .+ .....+.+++++++++++++ . +..|.+||.++++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 334445578899996 456777778899999998877652 22 23567899999999995544 4 5678999998876
Q ss_pred EEEEEecC--CC---cceeeeecCCeEEEEEcCccce----eceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 86 QLFTFNFD--SP---ARSVDFAVGDKLAVITTDPFME----LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 86 ~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
........ .+ .+.+.+.++..+.+........ ......++++..+ +... .+.......+.++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-----g~~~-~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-----HHVK-KYFDQVDISNGLDWSL 158 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----SCEE-EEEEEESBEEEEEECT
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-----CCEE-EEeeccccccceEEcC
Confidence 54333321 11 2334555555554433111000 0011122222211 1111 1222334457899999
Q ss_pred CCcEE-EEeeCCCcEEEEEC--CCCccc--cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee
Q 020461 157 LNRTI-ISAGEDAIVRIWDT--ETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (326)
Q Consensus 157 ~~~~l-~s~~~d~~i~~wd~--~~~~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (326)
+++.+ ++.+.++.|.+||+ .+++.. ..+.....+......++++++|.+.++...++.|..||.++++.+..+..
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 99866 45566889999987 455431 11111112335678899999998888877788999999999998888875
Q ss_pred c-cceEEEEeC-CCCCeeEEecC
Q 020461 232 E-RPVNAVTMS-PLLDHVVLGGG 252 (326)
Q Consensus 232 ~-~~~~~~~~s-~~~~~~~~~~~ 252 (326)
+ ..+.+++|. |+++.++++..
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCceEEEEeCCCCCEEEEEcC
Confidence 5 578899998 88888877654
No 200
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.44 E-value=5.6e-11 Score=98.21 Aligned_cols=189 Identities=10% Similarity=0.016 Sum_probs=127.4
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCc----ccceEEEEEcCCCCeEEEEeCCCc-----
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH----NGAVWCCDVSRDSMTLITGSADQT----- 75 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h----~~~V~~~~~~~~~~~l~s~~~d~~----- 75 (326)
.+..+...+.+++++|+|+++++...++.|.+|+.++++........ ...+..++++|+|+++++.+..++
T Consensus 63 ~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~ 142 (296)
T 3e5z_A 63 PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEE 142 (296)
T ss_dssp EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGG
T ss_pred EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccc
Confidence 34456677899999999999888888899999999888764433221 124567899999988877432221
Q ss_pred ----------EEEEEccC-CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 76 ----------AKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 76 ----------i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
-.||.+.. ++ ...+..
T Consensus 143 ~~~~~~~~~~~~l~~~~~~g~-----------------------------------------------------~~~~~~ 169 (296)
T 3e5z_A 143 GYGGEMELPGRWVFRLAPDGT-----------------------------------------------------LSAPIR 169 (296)
T ss_dssp SSCCCCCSSSCEEEEECTTSC-----------------------------------------------------EEEEEC
T ss_pred cccccccCCCcEEEEECCCCC-----------------------------------------------------EEEeec
Confidence 12222211 11 011112
Q ss_pred CccceeEEEEecCCcEEEEeeCCCcEEEEECC-CCcc---ccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~---~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
+....+.++|+|+++.+++.+.++.|.+||+. +++. ...+ ..+...+..++++++|...++. ++.|.+||.
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 23345678899999988777888999999986 4443 1122 1234556789999999866666 789999998
Q ss_pred CCcceEEEEeeccceEEEEe-CCCCCeeEEecC
Q 020461 221 RTLELIKTYVTERPVNAVTM-SPLLDHVVLGGG 252 (326)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~ 252 (326)
+ ++.+..+..+..+.+++| +|+++.++++..
T Consensus 245 ~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 245 D-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp T-SCEEEEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred C-CCEEEEEECCCCceeEEEECCCCCEEEEEcC
Confidence 7 677777664433888888 578877777643
No 201
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=2.4e-10 Score=94.85 Aligned_cols=237 Identities=8% Similarity=0.006 Sum_probs=145.9
Q ss_pred ceeeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 3 PILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
+..+..+........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++++++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 344555556678899999998 6777888899999987 454 3455556677899999999986665556678888887
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
+ ++........ .+ .....++.++++|+|..+
T Consensus 115 ~-g~~~~~~~~~-----------------------------------------~~-------~~~~~~~~i~~d~dG~l~ 145 (305)
T 3dr2_A 115 D-GQAHLLVGRY-----------------------------------------AG-------KRLNSPNDLIVARDGAIW 145 (305)
T ss_dssp T-SCEEEEECEE-----------------------------------------TT-------EECSCCCCEEECTTSCEE
T ss_pred C-CCEEEEEecc-----------------------------------------CC-------CccCCCCCEEECCCCCEE
Confidence 5 4322110000 00 001234567788888877
Q ss_pred EE----eeC-------------CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC------CeEEEe
Q 020461 162 IS----AGE-------------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLW 218 (326)
Q Consensus 162 ~s----~~~-------------d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d------g~i~iw 218 (326)
++ |.. .+.|..||..+++..... .......++++||++.|+.+... +.|..|
T Consensus 146 ~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~ 220 (305)
T 3dr2_A 146 FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF 220 (305)
T ss_dssp EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence 75 332 245777777666543211 22345788999999988777665 789999
Q ss_pred ecCCcceEEE---Ee--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeE
Q 020461 219 DARTLELIKT---YV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 293 (326)
Q Consensus 219 d~~~~~~~~~---~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 293 (326)
++.... +.. +. ....+..++++++++ +.++. .++ +..++.. ++.+..+..+. .+.+
T Consensus 221 ~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~-~~g--v~~~~~~-------------g~~~~~~~~~~-~~~~ 281 (305)
T 3dr2_A 221 AWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSS-GTG--VCVFDSD-------------GQLLGHIPTPG-TASN 281 (305)
T ss_dssp EEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECC-SSE--EEEECTT-------------SCEEEEEECSS-CCCE
T ss_pred EecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEec-CCc--EEEECCC-------------CCEEEEEECCC-ceeE
Confidence 987544 221 11 122355778888877 44443 222 2223321 11222222222 4789
Q ss_pred EEECCCCceEEeecCCCcEEE
Q 020461 294 LAFNPDGKSFSSGGEDGYVRL 314 (326)
Q Consensus 294 v~~s~d~~~lat~s~Dg~i~l 314 (326)
++|+|+++.|..++.++..++
T Consensus 282 ~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 282 CTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEECTTSCEEEEEETTEEEEE
T ss_pred EEEeCCCCEEEEEcCCeEEEE
Confidence 999999988877777754444
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=2.9e-11 Score=112.74 Aligned_cols=235 Identities=12% Similarity=0.037 Sum_probs=138.1
Q ss_pred ccCCCEEEeecCCCC---eEEEecC-----CCCeeee------ccCcccceEEEEEcCCCCeEEEEeCC-----CcEEEE
Q 020461 19 NKDGDLLFSCAKDHT---PTVWFAD-----NGERLGT------YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLW 79 (326)
Q Consensus 19 s~~~~~l~s~~~d~~---v~iw~~~-----~~~~~~~------~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~w 79 (326)
+|+|++++....++. -.+|... .++.... -.+|...+..++|||||++|+.++.+ .+|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489998776654433 5667543 3332211 12344468899999999988776644 459999
Q ss_pred EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
|+.+++.+..... ...+..++|+|+ +
T Consensus 195 dl~tg~~~~~~~~-----------------------------------------------------~~~~~~~~wspD-~ 220 (741)
T 1yr2_A 195 GVADGKPLADELK-----------------------------------------------------WVKFSGLAWLGN-D 220 (741)
T ss_dssp ETTTCCEEEEEEE-----------------------------------------------------EEESCCCEESTT-S
T ss_pred ECCCCCCCCccCC-----------------------------------------------------CceeccEEEECC-C
Confidence 9998875321000 000123567888 7
Q ss_pred EEEEeeCCCc--------------EEEEECCCCcccc-ccccccCcceeeEEEEEcCCCCeEEEEeCCC-----eEEEee
Q 020461 160 TIISAGEDAI--------------VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWD 219 (326)
Q Consensus 160 ~l~s~~~d~~--------------i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg-----~i~iwd 219 (326)
.|+.++.++. |.+|++.+++... .+.....+...+..+.+||||++|+..+.++ .|++||
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d 300 (741)
T 1yr2_A 221 ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVAR 300 (741)
T ss_dssp EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEE
T ss_pred EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEE
Confidence 7776665543 8899987765321 1112223334578899999999988877554 899999
Q ss_pred cCCc--ceEEEEeec-cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce--eeeccccccCcceeEE
Q 020461 220 ARTL--ELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--EEIGGVKGHFGPINAL 294 (326)
Q Consensus 220 ~~~~--~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~v 294 (326)
+.++ ++...+... ...... ++|+++.+++....+. ....+..++.... .....+..+...+..+
T Consensus 301 ~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~----------~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~ 369 (741)
T 1yr2_A 301 VTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA----------PLKKIVRVDLSGSTPRFDTVVPESKDNLESV 369 (741)
T ss_dssp EETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTC----------TTCEEEEEECSSSSCEEEEEECCCSSEEEEE
T ss_pred CCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCC----------CCCEEEEEeCCCCccccEEEecCCCCeEEEE
Confidence 9876 313444332 222333 3477777766543221 1122333332221 1111123344456778
Q ss_pred EECCCCceEEeecCCCcEEEeecCC
Q 020461 295 AFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 295 ~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
+|+ ++.++++...|+..+||.++.
T Consensus 370 ~~~-~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 370 GIA-GNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp EEE-BTEEEEEEEETTEEEEEEEET
T ss_pred EEE-CCEEEEEEEECCEEEEEEEeC
Confidence 887 677889999999999988764
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.41 E-value=3.5e-09 Score=90.24 Aligned_cols=282 Identities=12% Similarity=0.007 Sum_probs=161.5
Q ss_pred EEccCCCEEEeecC--CC---CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEEc
Q 020461 17 KYNKDGDLLFSCAK--DH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNV 81 (326)
Q Consensus 17 ~~s~~~~~l~s~~~--d~---~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd~ 81 (326)
...|++++++.+.. .. +|.++|..+++.+.++..-..+ .++++||+++++.+. .+++|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34578887777654 22 7899999999988888754444 899999999998886 3678999999
Q ss_pred cCCcEEEEEecC--------CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEE
Q 020461 82 ETGAQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRA 152 (326)
Q Consensus 82 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 152 (326)
.+.+.+..+... .....+.++++.+.+++..... ...+.+.+ . .++.+.. +.... ++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~---~~~v~viD-~------t~~~~~~~i~~~~----~~ 170 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA---GPAVGLVV-Q------GGSSDDQLLSSPT----CY 170 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC---CCeEEEEE-C------CCCEEeEEcCCCc----eE
Confidence 988877665443 1233566777766655543210 11122211 1 1222322 22111 13
Q ss_pred EEecCC-cEEEEeeCCCcEEEEECCCCccccccc--c-ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc--eE
Q 020461 153 VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESD--K-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LI 226 (326)
Q Consensus 153 ~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~--~-~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~ 226 (326)
.+.|.+ ..+++.+.||.+.++|. +++...... . ..+.........+.+++..++..+.++.+.+.|+.+.. .+
T Consensus 171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~ 249 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK 249 (373)
T ss_pred EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe
Confidence 344554 35566778999999999 776542211 0 01111112234456665555544577899999987542 22
Q ss_pred EEEee-----------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461 227 KTYVT-----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 295 (326)
Q Consensus 227 ~~~~~-----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 295 (326)
..+.. +.....+.++|+++.++++...... ..++.....+..++..+.+.+..+. -......++
T Consensus 250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~----~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~ 324 (373)
T 2mad_H 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA----WKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS 324 (373)
T ss_pred eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc----ccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEE
Confidence 22221 1113346788888877765331100 0000001123334443333333332 122578999
Q ss_pred ECCCCc-eEEeec-CCCcEEEeecCCC
Q 020461 296 FNPDGK-SFSSGG-EDGYVRLHHFDPD 320 (326)
Q Consensus 296 ~s~d~~-~lat~s-~Dg~i~l~~~~~~ 320 (326)
|+|||+ .++++. .++.|.+++....
T Consensus 325 ~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 325 VAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred ECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 999999 777777 4899999887653
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=9.9e-11 Score=108.28 Aligned_cols=241 Identities=15% Similarity=0.066 Sum_probs=138.1
Q ss_pred ecCCceeEEEEccCCCEEE-----eecCCCCeEEEecCCCCeeeeccCcccc--eEEEEEcCCCCeEEEEeCCCc-----
Q 020461 8 GHERPLTYLKYNKDGDLLF-----SCAKDHTPTVWFADNGERLGTYRGHNGA--VWCCDVSRDSMTLITGSADQT----- 75 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~-----s~~~d~~v~iw~~~~~~~~~~~~~h~~~--V~~~~~~~~~~~l~s~~~d~~----- 75 (326)
+|...+..++|||||++|| .|+.+..|++||+++++.+.. +... ...++|+ |++.|+-++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccc
Confidence 3555688899999999888 344557899999999986543 2222 3578899 9998888887743
Q ss_pred --------EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc-Cc
Q 020461 76 --------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQ 146 (326)
Q Consensus 76 --------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 146 (326)
|.+|++.++... ...+..... +.
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~------------------------------------------------~~~v~~~~~~~~ 233 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQED------------------------------------------------DRLVFGAIPAQH 233 (693)
T ss_dssp ---CCCCEEEEEETTSCGGG------------------------------------------------CEEEESCSGGGC
T ss_pred cccCCCcEEEEEECCCCccc------------------------------------------------ceEEEecCCCCC
Confidence 555555432210 000111112 23
Q ss_pred cceeEEEEecCCcEEEE-ee---CCCcEEEEECCCCc-cccccccccCcceeeEEEEEcCCCCeEE-EEeCC---CeEEE
Q 020461 147 GRINRAVWGPLNRTIIS-AG---EDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFL-TGSLD---KSAKL 217 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s-~~---~d~~i~~wd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~s~d---g~i~i 217 (326)
.....+.++|++++|+. .+ .+..|.++|+.++. ....+. .+....... ++++|..|+ ....+ +.|..
T Consensus 234 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~---~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~ 309 (693)
T 3iuj_A 234 HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ---GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVT 309 (693)
T ss_dssp CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe---CCCCceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence 34566789999997753 32 23589999987663 222222 223333333 455555554 44333 67999
Q ss_pred eecCCcce--EEEEeec-cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-cccCcceeE
Q 020461 218 WDARTLEL--IKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINA 293 (326)
Q Consensus 218 wd~~~~~~--~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~ 293 (326)
+|+.+++. .+.+... ..+. .+++.++.+++....++. ..+++++...... ..+ ....+.+..
T Consensus 310 ~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~-----------~~l~~~d~~g~~~-~~l~~p~~~~~~~ 375 (693)
T 3iuj_A 310 VDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT-----------ARVEQFDYEGKRV-REVALPGLGSVSG 375 (693)
T ss_dssp EETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE-----------EEEEEECTTSCEE-EEECCSSSSEEEE
T ss_pred EeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe-----------eEEEEEECCCCee-EEeecCCCceEEe
Confidence 99987654 2344332 2222 788888887765443321 2233443322111 111 123456777
Q ss_pred EEECCCCceEEeecCC----CcEEEeecC
Q 020461 294 LAFNPDGKSFSSGGED----GYVRLHHFD 318 (326)
Q Consensus 294 v~~s~d~~~lat~s~D----g~i~l~~~~ 318 (326)
+.++|++..++....+ ++|..+++.
T Consensus 376 ~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 376 FNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp CCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 8888888876554433 566665553
No 205
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.37 E-value=6.2e-10 Score=94.02 Aligned_cols=246 Identities=11% Similarity=0.109 Sum_probs=140.7
Q ss_pred CCceeEEEEccCCCEEEeec--CCCCeEEEecCCCCeeeec-------cCcccceEEEEEcCCCCeEEEEeC-----CCc
Q 020461 10 ERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTY-------RGHNGAVWCCDVSRDSMTLITGSA-----DQT 75 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~--~d~~v~iw~~~~~~~~~~~-------~~h~~~V~~~~~~~~~~~l~s~~~-----d~~ 75 (326)
...+..++++++|+++++.. .++.++||.+.+++.. .+ .+|-..+..+++++++++.++-.. +..
T Consensus 16 ~~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 16 SLAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SSCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 35778999999999988854 2344677766555433 22 234567899999999875554433 578
Q ss_pred EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (326)
Q Consensus 76 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (326)
|.+||+.+++.+..+...... ..+...++.++++
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~----------------------------------------------~~~~~~~~~v~vd 128 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPI----------------------------------------------TLSNSFVNDLAVD 128 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTT----------------------------------------------SCTTCCCCEEEEE
T ss_pred EEEEECCCCeEEEEEECChhh----------------------------------------------cccccccceEEEe
Confidence 999999888755444321100 0011234566777
Q ss_pred cCCcE-EEEee---CCCcEEEEECCCCccccccccc------------cC--------------cceeeEEEEEcCCCCe
Q 020461 156 PLNRT-IISAG---EDAIVRIWDTETGKLLKESDKE------------TG--------------HKKTITSLAKAADGSH 205 (326)
Q Consensus 156 ~~~~~-l~s~~---~d~~i~~wd~~~~~~~~~~~~~------------~~--------------h~~~v~~v~~s~~~~~ 205 (326)
|++.. +++-. .++.|.+||+.+++..+..... .+ -...+..++++|++..
T Consensus 129 ~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ 208 (343)
T 2qe8_A 129 LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW 208 (343)
T ss_dssp TTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE
T ss_pred cCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE
Confidence 65443 34444 5778899998776544322110 00 0023578999999998
Q ss_pred EEEEeCCCeEEEeecCCc----------ce---EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEe
Q 020461 206 FLTGSLDKSAKLWDARTL----------EL---IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF 272 (326)
Q Consensus 206 l~s~s~dg~i~iwd~~~~----------~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (326)
|+.+..++. ++|.+.+. +. +...........+++++++...++.... ..+..+|...+.+..
T Consensus 209 ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~--~~V~~~d~~~G~~~~-- 283 (343)
T 2qe8_A 209 LYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH--SAIGVITSADRAYKL-- 283 (343)
T ss_dssp EEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG--TEEEEEETTTTEEEE--
T ss_pred EEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCC--CeEEEEECCCCCEEE--
Confidence 888877663 44443211 00 1111122346678888887544332222 223333331122111
Q ss_pred ecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461 273 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 273 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~ 316 (326)
+.. ..+......++|.+++.++++.+..+.+.+|.
T Consensus 284 --------~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 284 --------LVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp --------EEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred --------EEE-CCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 100 01234578999999999888887666654443
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.33 E-value=6.1e-11 Score=100.68 Aligned_cols=142 Identities=8% Similarity=0.009 Sum_probs=110.0
Q ss_pred ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
|.....+.+ |++++| |+++|+++ .++.|++|++.+.........|...|..+.+.+. .++++..||.+.+||++
T Consensus 81 ~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 81 FKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLR 154 (388)
T ss_dssp CSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETT
T ss_pred ceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEcc
Confidence 434556777 999999 99999998 8899999999877766666777888888777654 38899999999999998
Q ss_pred CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
++.... +...|.+++|+|+| ++
T Consensus 155 ~~~~~~--------------------------------------------------------~~~~Vs~v~WSpkG--~~ 176 (388)
T 1xip_A 155 TKSTKQ--------------------------------------------------------LAQNVTSFDVTNSQ--LA 176 (388)
T ss_dssp TCCEEE--------------------------------------------------------EEESEEEEEECSSE--EE
T ss_pred CCcccc--------------------------------------------------------ccCCceEEEEcCCc--eE
Confidence 664320 11357889999998 67
Q ss_pred EeeCCCcEEEEECCCCcc--ccccc------cccCcceeeEEEEEcCCCCeEEE
Q 020461 163 SAGEDAIVRIWDTETGKL--LKESD------KETGHKKTITSLAKAADGSHFLT 208 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~--~~~~~------~~~~h~~~v~~v~~s~~~~~l~s 208 (326)
.|..||++++|+...++. ..++. ...+|...|.++.|.+++.++++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 799999999998876653 22331 11247789999999999998886
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.31 E-value=1.6e-09 Score=91.71 Aligned_cols=234 Identities=11% Similarity=0.064 Sum_probs=140.4
Q ss_pred EEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCcc-------cceEEEEEcCCCCeEEEEeC--CCc
Q 020461 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT 75 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h~-------~~V~~~~~~~~~~~l~s~~~--d~~ 75 (326)
.+++||||++++.++ .++.|.+||..+.+.+.++.-.. ..-..++|+|||++++.+.. +++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 499999999887775 36789999999999888764211 13456899999999888874 689
Q ss_pred EEEEEccCCcEEEEEecCCCc--------ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461 76 AKLWNVETGAQLFTFNFDSPA--------RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (326)
Q Consensus 76 i~~wd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (326)
|.++|+.+++.+..+...... ..+...+++.++.+.......+... . .. .+.-...
T Consensus 162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~----~--~~----------~~~~~~~ 225 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT----H--TE----------VFHPEDE 225 (386)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE----E--CC----------CCSCTTS
T ss_pred EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEe----e--cc----------eeccccc
Confidence 999999999988777543210 0011222223322222110000000 0 00 0000001
Q ss_pred ce-eEEEEe-cCCcEEEEeeCCCcEEEEECCCCcc--ccccccc------cC-cceeeEEEEEcCCCCeEEEEeC-----
Q 020461 148 RI-NRAVWG-PLNRTIISAGEDAIVRIWDTETGKL--LKESDKE------TG-HKKTITSLAKAADGSHFLTGSL----- 211 (326)
Q Consensus 148 ~i-~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~------~~-h~~~v~~v~~s~~~~~l~s~s~----- 211 (326)
++ ....|. +++++++ .+.+|+|.+.|..+... ...+... .+ .......+++++++..+.....
T Consensus 226 ~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 11 113454 5665444 55579999999865532 2111100 00 1223445777899888887653
Q ss_pred -----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCC-eeEEecCCCcceeEeecccCc
Q 020461 212 -----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAG 266 (326)
Q Consensus 212 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~d~~~~ 266 (326)
.++|-+.|+++++.+..+.....+..+++++++. .++++.+.+ ..+..+|...+
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~-~~VsViD~~t~ 364 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD-KTLYIHDAESG 364 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT-TEEEEEETTTC
T ss_pred ccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC-CeEEEEECCCC
Confidence 2579999999999999998888889999999997 555543322 22344454433
No 208
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.31 E-value=8e-10 Score=89.76 Aligned_cols=182 Identities=8% Similarity=-0.033 Sum_probs=122.8
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc-CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
..+.+++++++|+++++.. ++.|.+|+....... .+. .....+..++++++++.+++...++.|.+|+..+......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 144 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence 4578899999999777766 889999997655433 232 2335688999999998777777778888886543221100
Q ss_pred EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~ 169 (326)
.......+..++++|+++.+++...++.
T Consensus 145 ----------------------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 172 (270)
T 1rwi_B 145 ----------------------------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNR 172 (270)
T ss_dssp ----------------------------------------------------CCCSCCSCCCEEECTTCCEEEEEGGGTE
T ss_pred ----------------------------------------------------ccccCCCceeEEEeCCCCEEEEECCCCE
Confidence 0001123455778888887777777889
Q ss_pred EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCCeeE
Q 020461 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVV 248 (326)
Q Consensus 170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~ 248 (326)
|.+||.......... ..+...+..++++++|...++...++.|..||............. ..+.++++++++. ++
T Consensus 173 i~~~~~~~~~~~~~~---~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~ 248 (270)
T 1rwi_B 173 VVKLEAESNNQVVLP---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VY 248 (270)
T ss_dssp EEEECTTTCCEEECC---CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-EE
T ss_pred EEEEecCCCceEeec---ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-EE
Confidence 999998765433211 122256789999999977777777889999998765443221111 4578899999886 44
Q ss_pred Ee
Q 020461 249 LG 250 (326)
Q Consensus 249 ~~ 250 (326)
++
T Consensus 249 v~ 250 (270)
T 1rwi_B 249 VA 250 (270)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.30 E-value=8.4e-09 Score=87.28 Aligned_cols=284 Identities=12% Similarity=0.054 Sum_probs=160.5
Q ss_pred EEEccCCCEEEeecC-----CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEE
Q 020461 16 LKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWN 80 (326)
Q Consensus 16 ~~~s~~~~~l~s~~~-----d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd 80 (326)
....|+++.++.... ++.|.+.|..+++.+.++..-..+ . ++++||+++++.++ .+++|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 345799998877765 679999999999999888754555 4 99999999888776 367899999
Q ss_pred ccCCcEEEEEecCC--------CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461 81 VETGAQLFTFNFDS--------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (326)
Q Consensus 81 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (326)
..+.+.+..+.... ....+.++++++.+.+.... ....+.+.+.. ..+.+..+.-.. . ..
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~---~~~~VsVID~~------t~~vv~tI~v~g--~-~~ 183 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---PAPAVGVVDLE------GKAFKRMLDVPD--C-YH 183 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---SSCEEEEEETT------TTEEEEEEECCS--E-EE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC---CCCeEEEEECC------CCcEEEEEECCC--c-ce
Confidence 99999887775432 34557778777665554310 01112222211 122222222111 0 11
Q ss_pred EEecCCcEEEEeeCCCcEEEEECCC-Cccccccccc-cCcceee-EEEEE-cCCCCeEEEEeCCCeEEEeecCCcc--eE
Q 020461 153 VWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKE-TGHKKTI-TSLAK-AADGSHFLTGSLDKSAKLWDARTLE--LI 226 (326)
Q Consensus 153 ~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~-~~h~~~v-~~v~~-s~~~~~l~s~s~dg~i~iwd~~~~~--~~ 226 (326)
.+....+.+++.+.||.+.+.++.+ ++........ ..-...+ ....| .++|.+++ .+.+|++++.|..+.. .+
T Consensus 184 ~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~ 262 (386)
T 3sjl_D 184 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFL 262 (386)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEEC
T ss_pred eecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceee
Confidence 2222345666777788888888865 4432111000 0001112 12344 36775444 5558999999997653 33
Q ss_pred EEEe-----------eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461 227 KTYV-----------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 295 (326)
Q Consensus 227 ~~~~-----------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 295 (326)
..+. .+.....++++++++.++++-.++.. ..++....++..+|..+.+.+..+.- ..+++.|+
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~----~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~la 337 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE----WRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSIN 337 (386)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT----TCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEE
T ss_pred cceeccccccccccccCCCcceeeECCCCCeEEEEeccccc----cccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEE
Confidence 3332 01123356778888887775321100 00011112233333333332222211 12678999
Q ss_pred ECCCCc-eEEe-ecCCCcEEEeecCC
Q 020461 296 FNPDGK-SFSS-GGEDGYVRLHHFDP 319 (326)
Q Consensus 296 ~s~d~~-~lat-~s~Dg~i~l~~~~~ 319 (326)
|+||++ .|.+ ...++.|.+++...
T Consensus 338 vs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 338 VSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp ECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred ECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 999997 5555 55699999977654
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.29 E-value=8.9e-09 Score=87.76 Aligned_cols=220 Identities=8% Similarity=-0.046 Sum_probs=131.7
Q ss_pred EEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCc-------ccceEEEEEcCCCCeEEEEeC--CCc
Q 020461 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT 75 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h-------~~~V~~~~~~~~~~~l~s~~~--d~~ 75 (326)
.++|||||++|+.+. .++.|.+||..+.+.+.++.-- ...-..+.|+||+++|+.++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 889999999988876 3678999999988877665321 112347889999999998874 578
Q ss_pred EEEEEccCCcEEEE-EecCCCcceeeeecCC--eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE------eccCc
Q 020461 76 AKLWNVETGAQLFT-FNFDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI------LKGPQ 146 (326)
Q Consensus 76 i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 146 (326)
|.++| .+++.+.. +..... ..+.+.. .++..+.+.... .... .+..... ..+..
T Consensus 150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~------~vd~-------~g~~~~~~~~~~~~~~~~ 212 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLA------KTDH-------AGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEE------EEEC-------CCcEEEEEeccccccCCc
Confidence 99999 99887765 433211 2222211 111111111100 0000 0000000 01111
Q ss_pred cceeEEEEecCCcEEEEeeCCCcEEEEECCCCcc--ccccccc------cC-cceeeEEEEEcCCCCeEEEEeC------
Q 020461 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKE------TG-HKKTITSLAKAADGSHFLTGSL------ 211 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~------~~-h~~~v~~v~~s~~~~~l~s~s~------ 211 (326)
.......+.+++..++..+..+.+.+.|+.++.. ...+... .+ .......+.+++++..+..+..
T Consensus 213 p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 213 NLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred ceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence 1112244566655444444678899999865422 1111100 00 0122344778999998887654
Q ss_pred ----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCC-eeEEec
Q 020461 212 ----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGG 251 (326)
Q Consensus 212 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~ 251 (326)
++.|.+.|.++++.+.++........++++|+++ .++++.
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence 3579999999999999998777799999999999 555543
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.25 E-value=1.6e-08 Score=84.63 Aligned_cols=227 Identities=14% Similarity=0.044 Sum_probs=138.9
Q ss_pred eeEEEEccCC-CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461 13 LTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (326)
Q Consensus 13 i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 91 (326)
.....|+|++ .++++...++.|.+|+.++++.. .+. ....+.+++++++++++++. .+ .|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 4678999975 46667777889999998877543 232 34578999999999876654 44 48999998887543332
Q ss_pred cCC-----CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-Eee
Q 020461 92 FDS-----PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAG 165 (326)
Q Consensus 92 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~ 165 (326)
... ....+.+.++..+.+...... .......++.+. . +. ...+..+....+.++|+|+++.++ +..
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-~~~~~~~l~~~~-~-----g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRK-AETGAGSIYHVA-K-----GK-VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETT-CCTTCEEEEEEE-T-----TE-EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCc-CCCCceEEEEEe-C-----Cc-EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 211 123445555555544322100 000011222221 1 11 111222223467889999998665 445
Q ss_pred CCCcEEEEECC--CC-ccc--cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEE
Q 020461 166 EDAIVRIWDTE--TG-KLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVT 239 (326)
Q Consensus 166 ~d~~i~~wd~~--~~-~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~ 239 (326)
.++.|.+||+. ++ +.. ..+............++++++|.+.++...++.|..||. +++.+..+..+ ..+.+++
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPA 277 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEE
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEE
Confidence 67899999985 55 321 111111122345678999999987777777789999998 56666666543 3588899
Q ss_pred eC-CCCCeeEEecC
Q 020461 240 MS-PLLDHVVLGGG 252 (326)
Q Consensus 240 ~s-~~~~~~~~~~~ 252 (326)
|+ ++++.++++..
T Consensus 278 f~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 278 FIGPDASRLLVTSA 291 (326)
T ss_dssp EESTTSCEEEEEEB
T ss_pred EecCCCCEEEEEec
Confidence 98 88777766543
No 212
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.24 E-value=1.3e-07 Score=77.58 Aligned_cols=239 Identities=9% Similarity=0.036 Sum_probs=143.9
Q ss_pred cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec---CCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461 49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (326)
Q Consensus 49 ~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..+...+.++++.++++..++...++.|.+||.. ++.. .+.. ......+.+.+++.+.++.... ..+...
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~ 83 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAA-----NKIGRI 83 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEE
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCC-----CeEEEE
Confidence 3455678999999999877776668899999988 5433 2222 1233445555555554443211 011111
Q ss_pred eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe
Q 020461 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205 (326)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 205 (326)
. . . +.............+..++++|++..+++...++.|..||. +++..... .......+..++++++|..
T Consensus 84 ~--~--~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~--~~~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 84 T--K--K--GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE--LPNKGSYPSFITLGSDNAL 154 (299)
T ss_dssp C--T--T--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE--CSSTTCCEEEEEECTTSCE
T ss_pred C--C--C--CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec--CCCCCCCCceEEEcCCCCE
Confidence 1 0 0 11111112223456788999999988887777889999998 55433211 1123456789999999987
Q ss_pred EEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461 206 FLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283 (326)
Q Consensus 206 l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (326)
.++...++.|..||. +++...... ....+..+++++++.. +++..... .+..+|. .+... .+ .
T Consensus 155 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~~~~-~i~~~~~-~g~~~--~~---------~ 219 (299)
T 2z2n_A 155 WFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL-WFVEIIGN-KIGRITT-SGEIT--EF---------K 219 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-EEEETTTT-EEEEECT-TCCEE--EE---------E
T ss_pred EEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-EEEccCCc-eEEEECC-CCcEE--EE---------E
Confidence 777777889999998 665543211 1235778899988764 43322221 2333333 22211 01 0
Q ss_pred ccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
...+...+..++++++|..+++...++.|..|+.+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 12234568899999999988877678888887764
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.17 E-value=1e-08 Score=88.23 Aligned_cols=233 Identities=9% Similarity=-0.014 Sum_probs=141.0
Q ss_pred EEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCc-------ccceEEEEEcCCCCeEEEEeC--CCc
Q 020461 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT 75 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h-------~~~V~~~~~~~~~~~l~s~~~--d~~ 75 (326)
.+.+||||++|+.+. .++.|.++|..+++.+.++.-- ...-..+.|+||+++++.+.. +++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888776 3678999999999988776421 122356789999999998874 578
Q ss_pred EEEEEccCCcEEEEEecCCC--------cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461 76 AKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (326)
Q Consensus 76 i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (326)
|.+.|+.+++.+..+..... ...+.+..++.+.++... ...+.... . ..+.-...
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~~~-----~-----------~~~~v~~~ 264 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFA-DGETKVTN-----T-----------EVFHTEDE 264 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECC-TTCCEEEE-----C-----------CCCSCTTS
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECC-CCcEEEEe-----e-----------eeeccCCC
Confidence 99999999988776654221 000111222222222110 00000000 0 00000011
Q ss_pred ce-eEEEEecCCcEEEEeeCCCcEEEEECCCCccc--ccccc----ccCc---ceeeEEEEEcCCCCeEEEEeC------
Q 020461 148 RI-NRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDK----ETGH---KKTITSLAKAADGSHFLTGSL------ 211 (326)
Q Consensus 148 ~i-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~----~~~h---~~~v~~v~~s~~~~~l~s~s~------ 211 (326)
++ ....+.+++..++.....+.|.+.|....... ..+.. .... ......+++++++.++.....
T Consensus 265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt 344 (426)
T 3c75_H 265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK 344 (426)
T ss_dssp CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence 11 12456888777666667889999998654321 11000 0000 111223688999887776643
Q ss_pred ----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCC-eeEEecCCCcceeEeecccC
Q 020461 212 ----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRA 265 (326)
Q Consensus 212 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~d~~~ 265 (326)
++.|.+.|.++.+.+..+........++++|+++ .++++-.. ...+...|...
T Consensus 345 hk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~-s~~VsVID~~t 402 (426)
T 3c75_H 345 HKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG-TQTLHIYDAAT 402 (426)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT-TTEEEEEETTT
T ss_pred ccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC-CCeEEEEECCC
Confidence 3579999999999999998777799999999998 66655422 22344444433
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.16 E-value=9e-08 Score=82.37 Aligned_cols=281 Identities=11% Similarity=0.007 Sum_probs=157.9
Q ss_pred cCCCEEEeecCC-----CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEEccCC
Q 020461 20 KDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETG 84 (326)
Q Consensus 20 ~~~~~l~s~~~d-----~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~ 84 (326)
+++++++.+... +.|.+.|..+.+.+.++..-..+ .+.++||+++++.+. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 567766555442 69999999999999888754555 799999999888876 4678999999999
Q ss_pred cEEEEEecC--------CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461 85 AQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (326)
Q Consensus 85 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (326)
+.+..+... .....+.++++.+.+.++... ....+.+.+.. ..+.+..+.-.. +....|
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~---~~~~VsVID~~------t~kvv~~I~v~g----~~~~~p 226 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS---PAPAVGVVDLE------GKTFDRMLDVPD----CYHIFP 226 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS---SSCEEEEEETT------TTEEEEEEECCS----EEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC---CCCeEEEEECC------CCeEEEEEEcCC----ceeecc
Confidence 988776543 234456777777665554321 01111111111 112222222111 012233
Q ss_pred CC-cEEEEeeCCCcEEEEECCCCcccccc--ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE--EEEee
Q 020461 157 LN-RTIISAGEDAIVRIWDTETGKLLKES--DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYVT 231 (326)
Q Consensus 157 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~ 231 (326)
.+ ..+++.+.||.+.+.+..+++..... ....+.......+.+++++..++..+..+.+.+.|+...... ..+..
T Consensus 227 ~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 227 ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence 32 44556666777777777544332110 000111111224567888888877788899999998654321 11110
Q ss_pred -----------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC
Q 020461 232 -----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (326)
Q Consensus 232 -----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~ 300 (326)
+.....++++|+++.++++-..... ..++.....+..+|..+.+.+..+.. ....+.++|+|||
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~----gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg 381 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE----WKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDA 381 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT----TCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSS
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEeccccc----ccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCC
Confidence 0112236888888887765321000 00000011233333333333322221 1247899999999
Q ss_pred c-eEEeec-CCCcEEEeecCCC
Q 020461 301 K-SFSSGG-EDGYVRLHHFDPD 320 (326)
Q Consensus 301 ~-~lat~s-~Dg~i~l~~~~~~ 320 (326)
+ .+++.. .++.|.+++....
T Consensus 382 ~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 382 EPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp SCEEEEEETTTTEEEEEETTTC
T ss_pred CEEEEEEcCCCCeEEEEECCCC
Confidence 9 777777 5999999877654
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.15 E-value=1.4e-08 Score=84.16 Aligned_cols=204 Identities=9% Similarity=0.045 Sum_probs=121.1
Q ss_pred cCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeee-ccC----cccceEEEEEcCCCCeEEEEeCC---------
Q 020461 9 HERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGT-YRG----HNGAVWCCDVSRDSMTLITGSAD--------- 73 (326)
Q Consensus 9 h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~-~~~----h~~~V~~~~~~~~~~~l~s~~~d--------- 73 (326)
+...+..++++++ ++++++...+ .|.+|+.+ ++.... ... ....+..+++++++++.++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4456889999999 7766665544 78889987 665433 221 12357899999999877776655
Q ss_pred ------CcEEEEEccCCcEEEEEecCCCcceeeee----cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec
Q 020461 74 ------QTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (326)
Q Consensus 74 ------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (326)
+.|..||.. ++.............+.+. ++...+.+.... ...+..+................+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~ 221 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP----TKKLWSYDIKGPAKIENKKVWGHIP 221 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT----TTEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECC----CCeEEEEECCCCCccccceEEEECC
Confidence 456666665 4443322222223455566 555333222111 0111111111000000000122233
Q ss_pred cCc-cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecC
Q 020461 144 GPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDAR 221 (326)
Q Consensus 144 ~~~-~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~ 221 (326)
++. ..+..+++++++.++++...++.|.+||..+++....+. .+...+.++++++++..| ++...++.|..|++.
T Consensus 222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 333 557789999999888887788899999998666544332 234668899999999855 455566889999876
Q ss_pred C
Q 020461 222 T 222 (326)
Q Consensus 222 ~ 222 (326)
.
T Consensus 299 ~ 299 (314)
T 1pjx_A 299 R 299 (314)
T ss_dssp S
T ss_pred C
Confidence 4
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=6.4e-09 Score=87.99 Aligned_cols=221 Identities=10% Similarity=-0.048 Sum_probs=129.6
Q ss_pred EEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCcc-------cceEEEEEcCCCCeEEEEeC--CCc
Q 020461 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT 75 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h~-------~~V~~~~~~~~~~~l~s~~~--d~~ 75 (326)
.+.|+||+++++.+. .+++|.+||..+++.+.++.... ..-..++++||+++++.+.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999888876 37899999999999998875431 23457899999999998874 467
Q ss_pred EEE--EEccCCcEEEEEecCCC--------cceeeeecCCeEEEEEcCc----cceece----eeeeee---eccCCC--
Q 020461 76 AKL--WNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDP----FMELNS----AIHVKR---IARDPA-- 132 (326)
Q Consensus 76 i~~--wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~---~~~~~~-- 132 (326)
+.+ +|..+ +..+..... ...+....++.+..+..+. ...+.. .+.+.. ...+..
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 88876 222221110 0001111222222221111 000000 000000 000000
Q ss_pred ---CCCCceEEEeccC---------------------ccceeEEEEecCCcEEEEeeC---------CCcEEEEECCCCc
Q 020461 133 ---DQGGESVLILKGP---------------------QGRINRAVWGPLNRTIISAGE---------DAIVRIWDTETGK 179 (326)
Q Consensus 133 ---~~~~~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~ 179 (326)
..+.-......+. ......+.++|+++.++.+.. ++.+.++|+.+.+
T Consensus 226 ~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~ 305 (368)
T 1mda_H 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred EEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe
Confidence 0000000000000 011122679999987775432 2356699999988
Q ss_pred cccccccccCcceeeEEEEEcCCCCe-EEEEe-CCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461 180 LLKESDKETGHKKTITSLAKAADGSH-FLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (326)
Q Consensus 180 ~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~ 242 (326)
.+..+.. + .....+++++||++ +++.. .+++|.++|+++++.+.++........+++++
T Consensus 306 vv~~i~v--g--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 306 TSGPISN--G--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp EEECCEE--E--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred EEEEEEC--C--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeec
Confidence 7776542 2 35789999999984 56666 59999999999999999987766666776654
No 217
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.10 E-value=1.8e-10 Score=98.25 Aligned_cols=201 Identities=13% Similarity=0.057 Sum_probs=105.9
Q ss_pred CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCc---c
Q 020461 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA---R 97 (326)
Q Consensus 21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---~ 97 (326)
++.++++++.|+.|+.||.++|+.+-.++. +.+.+..+..+++.+++++.|+.|..||.++++.+..+.+..+. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999998877665 45555555667778888899999999999998876655432110 0
Q ss_pred eeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCC
Q 020461 98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177 (326)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 177 (326)
...+..++.+++... ...+..++. ..++....+..+. ....+|++..+++++.|+.|..||.++
T Consensus 86 sp~~~~~~~v~~g~~------dg~v~a~D~------~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 86 SPCRSSDGILYMGKK------QDIWYVIDL------LTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp CSCC-----CCCCEE------EEEEEEECC------C--------------------------EEEEEEEEEEECCCSSS
T ss_pred CceEecCCEEEEEeC------CCEEEEEEC------CCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCC
Confidence 000101111111111 111111111 1122222222221 123456778899999999999999999
Q ss_pred CccccccccccCcceeeEEEEEcCCC---CeEEEEeCCCeEEEeecCCcceEEEEeeccceE-EEEeCCCC
Q 020461 178 GKLLKESDKETGHKKTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYVTERPVN-AVTMSPLL 244 (326)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~v~~s~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~s~~~ 244 (326)
++.+-.... .......++.+. ..+++++.||.|+.||.++++.+-++....++. ...+++++
T Consensus 150 G~~~W~~~~-----~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 150 RELRWNATY-----FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREG 215 (369)
T ss_dssp SSCCCEEEE-----EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSS
T ss_pred CCEEEeEec-----ccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCc
Confidence 876544321 112223334432 567889999999999999999887776554443 23344443
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.09 E-value=6.1e-08 Score=83.70 Aligned_cols=209 Identities=12% Similarity=0.080 Sum_probs=119.9
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCC
Q 020461 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133 (326)
Q Consensus 54 ~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (326)
....++|+++++++++...++.|++||+++++......
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~------------------------------------------ 169 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP------------------------------------------ 169 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec------------------------------------------
Confidence 45678888888766666667888888887654322110
Q ss_pred CCCceEEEeccCccceeEEEEecCCcEEEEeeCCC--cEEEEECCCCccccccccc-cCcceeeEEEEEcCCCCeEEEEe
Q 020461 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGS 210 (326)
Q Consensus 134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~s 210 (326)
. ..... ++|+|+++.|+.+..++ .|.+||...+.....+... ......+.+++++|++..|+.+.
T Consensus 170 ----------~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d 237 (409)
T 3hrp_A 170 ----------G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVD 237 (409)
T ss_dssp ----------T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEEC
T ss_pred ----------c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEE
Confidence 0 01112 67888888888777765 7888887655432222000 11335577899999555566677
Q ss_pred CCCeEEEeecCCcceEEE----Eeecc---ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc--ceeee
Q 020461 211 LDKSAKLWDARTLELIKT----YVTER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI--LQEEI 281 (326)
Q Consensus 211 ~dg~i~iwd~~~~~~~~~----~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~ 281 (326)
.++.|+.||..++....- ..... +.+.++++|++..++++..... .+..++.... ... +.... .+..-
T Consensus 238 ~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~-~I~~~~~~g~-~~~-~~g~~~~~g~~d 314 (409)
T 3hrp_A 238 SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS-SVYKITPDGE-CEW-FCGSATQKTVQD 314 (409)
T ss_dssp TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT-EEEEECTTCC-EEE-EEECTTCCSCBC
T ss_pred CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC-EEEEEecCCC-EEE-EEeCCCCCCcCC
Confidence 789999999987653221 11111 1138999997666666543322 2222322111 110 00000 00000
Q ss_pred -ccccccCcceeEEEECCCCceEEeec-CCCcEEEeecCC
Q 020461 282 -GGVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDP 319 (326)
Q Consensus 282 -~~~~~h~~~v~~v~~s~d~~~lat~s-~Dg~i~l~~~~~ 319 (326)
............++|+|+|.++++-+ .+++|+.|+...
T Consensus 315 g~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 315 GLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp EEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred CcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 00001123478999999999888888 889999987543
No 219
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.05 E-value=2.2e-07 Score=74.46 Aligned_cols=187 Identities=12% Similarity=0.037 Sum_probs=124.4
Q ss_pred ceeEEEEccCCCEEEeecC--CCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEE-EeCCCcEEEEEccCCcEE
Q 020461 12 PLTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLIT-GSADQTAKLWNVETGAQL 87 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~ 87 (326)
....+.|++++.++++.+. +++|++.|.++++.+..+.-.. .....+++. ++.|+. .-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3578999998766666553 6899999999999888764211 123345554 445544 446789999999888766
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
..+....+ .+ ..++++++.++.+..+
T Consensus 100 ~~i~~g~~--------------------------------------------------~g----~glt~Dg~~l~vs~gs 125 (266)
T 2iwa_A 100 KNFTHQMK--------------------------------------------------DG----WGLATDGKILYGSDGT 125 (266)
T ss_dssp EEEECCSS--------------------------------------------------SC----CEEEECSSSEEEECSS
T ss_pred EEEECCCC--------------------------------------------------Ce----EEEEECCCEEEEECCC
Confidence 54432100 00 1133455555555568
Q ss_pred CcEEEEECCCCccccccccccC-c-ceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-------------
Q 020461 168 AIVRIWDTETGKLLKESDKETG-H-KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------------- 232 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~-h-~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------- 232 (326)
++|.++|..+.+....+..... . -..+..+.+. +|...++...++.|.+-|.++++.+..+...
T Consensus 126 ~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~ 204 (266)
T 2iwa_A 126 SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRD 204 (266)
T ss_dssp SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTT
T ss_pred CeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccc
Confidence 8999999988777665542211 0 0124566776 6654455546789999999999999988643
Q ss_pred -cceEEEEeCCCCCeeEEecCCCc
Q 020461 233 -RPVNAVTMSPLLDHVVLGGGQDA 255 (326)
Q Consensus 233 -~~~~~~~~s~~~~~~~~~~~~~~ 255 (326)
...+.++++|+++.+++++....
T Consensus 205 ~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 205 IDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp CCCEEEEEEETTTTEEEEEETTCS
T ss_pred cCceEEEEEcCCCCEEEEECCCCC
Confidence 24589999999999888876443
No 220
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.05 E-value=2.6e-06 Score=69.75 Aligned_cols=236 Identities=9% Similarity=0.029 Sum_probs=140.4
Q ss_pred cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeee
Q 020461 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI 127 (326)
Q Consensus 51 h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (326)
....+.++++.++++..++...++.|.+||.. ++... +... .....+.+.+++.+.++.... ..+. .+
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~v~--~~ 88 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGA-----NKIG--KL 88 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTT-----TEEE--EE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCC-----CeEE--EE
Confidence 34567889999999877777778999999988 55432 3222 223344444545554443211 0111 11
Q ss_pred ccCCCCCCCceE-EEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE
Q 020461 128 ARDPADQGGESV-LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF 206 (326)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l 206 (326)
. .. +... .........+..+++++++..+++...++.|..+|.. ++... +. .......+..+++++++...
T Consensus 89 d--~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~-~~~~~~~~~~i~~d~~g~l~ 160 (300)
T 2qc5_A 89 S--KK---GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YD-LPNKGSYPAFITLGSDNALW 160 (300)
T ss_dssp C--TT---SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EE-CSSTTCCEEEEEECTTSSEE
T ss_pred C--CC---CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-cc-CCCCCCCceeEEECCCCCEE
Confidence 1 11 1111 1222234567889999999888877778899999987 54432 11 11233567899999999877
Q ss_pred EEEeCCCeEEEeecCCcceEEEEee---ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461 207 LTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283 (326)
Q Consensus 207 ~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (326)
++...++.|..+|. +++... +.. ...+..+++++++...+...... .+..+|. .+.... . .
T Consensus 161 v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~--~i~~~~~-~g~~~~----------~-~ 224 (300)
T 2qc5_A 161 FTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGN--KIGRITT-TGEISE----------Y-D 224 (300)
T ss_dssp EEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTT--EEEEECT-TCCEEE----------E-E
T ss_pred EEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCC--EEEEEcC-CCcEEE----------E-E
Confidence 77766889999998 555433 322 23577888988775433322222 2333332 111110 0 0
Q ss_pred ccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
...+...+..++++++|..+++...++.|..++.+.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g 260 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDN 260 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCC
Confidence 112345678999999999888777778888876543
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.05 E-value=8.5e-09 Score=95.38 Aligned_cols=203 Identities=13% Similarity=0.026 Sum_probs=116.0
Q ss_pred CcccceEEEEEcCCCCeEEE-----EeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461 50 GHNGAVWCCDVSRDSMTLIT-----GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (326)
Q Consensus 50 ~h~~~V~~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
+|...+..++||||+++|+- |+...+|++||+.+++.+... ...
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~------------------------------ 174 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD------------------------------ 174 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE------------------------------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC------------------------------
Confidence 45557889999999998762 333467999999988753210 000
Q ss_pred eeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC-------------cEEEEECCCCcccc-ccccccC-
Q 020461 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-------------IVRIWDTETGKLLK-ESDKETG- 189 (326)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-------------~i~~wd~~~~~~~~-~~~~~~~- 189 (326)
.....++|+ +++.|+.++.+. .|++|++.++.... .+.....
T Consensus 175 ----------------------~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~ 231 (693)
T 3iuj_A 175 ----------------------VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA 231 (693)
T ss_dssp ----------------------EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG
T ss_pred ----------------------ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC
Confidence 001124577 777777666653 39999987764321 1222223
Q ss_pred cceeeEEEEEcCCCCeEEEEeC----CCeEEEeecCCcc-eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461 190 HKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLE-LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (326)
Q Consensus 190 h~~~v~~v~~s~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~ 264 (326)
|......+.++|||++|+.... +..|+++|+.+++ ....+..........++++++.+++....+.
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~--------- 302 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDA--------- 302 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTC---------
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCC---------
Confidence 4445678999999998754332 3589999998764 3344433222222225666776665543321
Q ss_pred CceeeeEeecccceee--eccccccCcceeEEEECCCCceEEeecC-CC--cEEEeecC
Q 020461 265 AGKFEAKFFDKILQEE--IGGVKGHFGPINALAFNPDGKSFSSGGE-DG--YVRLHHFD 318 (326)
Q Consensus 265 ~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg--~i~l~~~~ 318 (326)
....+..++...... ...+..|...+. .|+|+++.|+.... |+ .|++|+++
T Consensus 303 -~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 303 -PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp -TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred -CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 111223333222111 122344555555 88999988776655 44 56666554
No 222
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.04 E-value=7.5e-07 Score=73.38 Aligned_cols=224 Identities=12% Similarity=0.061 Sum_probs=125.5
Q ss_pred ccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccC
Q 020461 52 NGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 130 (326)
Q Consensus 52 ~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (326)
...-.+..|+++++ ++++...++.|..||..+++. ..+.....+..+.+.++..+.+..... +...+..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~-------l~~~d~~-- 81 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTK-------FCALNWK-- 81 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTE-------EEEEETT--
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCe-------EEEEECC--
Confidence 33456788888654 566666789999999988765 344555566677777766655543221 1111110
Q ss_pred CCCCCCceEEEec----cCccceeEEEEecCCcEEEEeeCC---------CcEEEEECCC-CccccccccccCcceeeEE
Q 020461 131 PADQGGESVLILK----GPQGRINRAVWGPLNRTIISAGED---------AIVRIWDTET-GKLLKESDKETGHKKTITS 196 (326)
Q Consensus 131 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~ 196 (326)
++....... .....++.++++|+++++++...+ ..-.+|.+.. ++.. .+. .+......
T Consensus 82 ----~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~---~~~~~png 153 (297)
T 3g4e_A 82 ----EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYF---DQVDISNG 153 (297)
T ss_dssp ----TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEE---EEESBEEE
T ss_pred ----CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEe---eccccccc
Confidence 111111111 123457889999999966654322 2234555432 3221 111 22334678
Q ss_pred EEEcCCCCeE-EEEeCCCeEEEeec--CCcceE--EEEe----eccceEEEEeCCCCCeeEEecCCCcceeEeecccCce
Q 020461 197 LAKAADGSHF-LTGSLDKSAKLWDA--RTLELI--KTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 267 (326)
Q Consensus 197 v~~s~~~~~l-~s~s~dg~i~iwd~--~~~~~~--~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~ 267 (326)
++++|+++.| ++.+.++.|..||+ .++... +.+. ....+..+++++++. ++++...+. .+
T Consensus 154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~-~v--------- 222 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGG-RV--------- 222 (297)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTT-EE---------
T ss_pred eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCC-EE---------
Confidence 9999999866 45566889999987 455432 1121 123567889988875 444322221 12
Q ss_pred eeeEeecccceeeeccccccCcceeEEEEC-CCCceEEeec
Q 020461 268 FEAKFFDKILQEEIGGVKGHFGPINALAFN-PDGKSFSSGG 307 (326)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~d~~~lat~s 307 (326)
..|+..+++.+..+..+...+++++|. ||++.|..++
T Consensus 223 ---~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 223 ---IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp ---EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred ---EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 233333333333344455678999998 8887654333
No 223
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.03 E-value=2.4e-07 Score=73.56 Aligned_cols=181 Identities=10% Similarity=0.061 Sum_probs=123.0
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceE--EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW--CCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~--~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 89 (326)
....+.|+ ++.++++.+.+|.|+++|+++++.+..+ - ..... .+++.. ++.....-.++.+.+||.++.+.+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence 34688887 4678888999999999999999988776 2 23333 355532 23334445688999999999887766
Q ss_pred EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~ 169 (326)
+....... .+.++++.|+.+..++.
T Consensus 132 i~~~~eGw-------------------------------------------------------GLt~Dg~~L~vSdGs~~ 156 (268)
T 3nok_A 132 TRYSGEGW-------------------------------------------------------GLCYWNGKLVRSDGGTM 156 (268)
T ss_dssp EECSSCCC-------------------------------------------------------CEEEETTEEEEECSSSE
T ss_pred EeCCCcee-------------------------------------------------------EEecCCCEEEEECCCCE
Confidence 54321000 01233555665556889
Q ss_pred EEEEECCCCccccccccccCcce---eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--------------
Q 020461 170 VRIWDTETGKLLKESDKETGHKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------- 232 (326)
Q Consensus 170 i~~wd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------- 232 (326)
|.++|..+.+....+.... +.. .+..+.+. +|...+..-.+..|.+.|.++++.+..+...
T Consensus 157 l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~ 234 (268)
T 3nok_A 157 LTFHEPDGFALVGAVQVKL-RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE 234 (268)
T ss_dssp EEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred EEEEcCCCCeEEEEEEeCC-CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcC
Confidence 9999999887776554321 222 23456665 6655544446889999999999999887642
Q ss_pred cceEEEEeCCCCCeeEEecCC
Q 020461 233 RPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~~~~ 253 (326)
.-.|+++++|..+.++++|..
T Consensus 235 ~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 235 AVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp CCEEEEEECTTTCCEEEEETT
T ss_pred CceEEEEEcCCCCEEEEeCCC
Confidence 246899999999998888753
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=6.4e-07 Score=76.63 Aligned_cols=231 Identities=14% Similarity=0.097 Sum_probs=132.9
Q ss_pred cCCCEEE-eecCCCCeEEEecCCC----Ceeeecc------C-cccceEEEEEcCCCCeEEEEeCC------CcEEEEEc
Q 020461 20 KDGDLLF-SCAKDHTPTVWFADNG----ERLGTYR------G-HNGAVWCCDVSRDSMTLITGSAD------QTAKLWNV 81 (326)
Q Consensus 20 ~~~~~l~-s~~~d~~v~iw~~~~~----~~~~~~~------~-h~~~V~~~~~~~~~~~l~s~~~d------~~i~~wd~ 81 (326)
+++++|+ ++..+++|.++|..+. +.+++++ . -...-..+...|++ .++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7888655 5667889999998755 4455552 0 01122345667998 77776666 67888888
Q ss_pred cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
.+++.+..+..... ...--+.+.|+|+++.+
T Consensus 172 ~T~~v~~~~~~~~~-------------------------------------------------~~~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 172 YSFEPLGKWEIDRG-------------------------------------------------DQYLAYDFWWNLPNEVL 202 (462)
T ss_dssp TTCCEEEECCSBCT-------------------------------------------------TCCCCCCEEEETTTTEE
T ss_pred CCCeEEEEEccCCC-------------------------------------------------CccccceEEECCCCCEE
Confidence 88776654431100 00111234567777777
Q ss_pred EEee-------------------CCCcEEEEECCCCccccccccccCcceeeEEEEE--cCCCCeEEEEe------CCCe
Q 020461 162 ISAG-------------------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGS------LDKS 214 (326)
Q Consensus 162 ~s~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~--s~~~~~l~s~s------~dg~ 214 (326)
++.. .+.+|.+||+.+++...++.... .......+.+ +|+++++..++ .+++
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~ 281 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-ENRMALELRPLHDPTKLMGFINMVVSLKDLSSS 281 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-CCCccceeEeeECCCCCEEEEEEeeeccCCCce
Confidence 7764 36889999999887666554321 1233445545 99999988777 4568
Q ss_pred EEEeecCCcce--EEEE--ee-----------------ccceEEEEeCCCCCeeEEecCCCcceeEeeccc-CceeeeEe
Q 020461 215 AKLWDARTLEL--IKTY--VT-----------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR-AGKFEAKF 272 (326)
Q Consensus 215 i~iwd~~~~~~--~~~~--~~-----------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~ 272 (326)
|.+|....++. .+.+ .. ......+.+|++++.++++-... ..+..+|.. .+... +
T Consensus 282 V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-d~VavfdV~d~~~~~--l 358 (462)
T 2ece_A 282 IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-GEVRQYDISNPFKPV--L 358 (462)
T ss_dssp EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-TEEEEEECSSTTSCE--E
T ss_pred EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-CEEEEEEecCCCCcE--E
Confidence 87766543321 1111 00 12356788999999988764322 234444422 11111 1
Q ss_pred ecccceeeeccc-------ccc--CcceeEEEECCCCceEEeec
Q 020461 273 FDKILQEEIGGV-------KGH--FGPINALAFNPDGKSFSSGG 307 (326)
Q Consensus 273 ~~~~~~~~~~~~-------~~h--~~~v~~v~~s~d~~~lat~s 307 (326)
. ....+++. +|. .+.-..+++||||++|..+.
T Consensus 359 v---~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 359 T---GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp E---EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred E---EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 01111110 000 11247799999999988777
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.02 E-value=2.2e-07 Score=73.72 Aligned_cols=184 Identities=14% Similarity=0.126 Sum_probs=123.2
Q ss_pred ceeEEEEccCCCEEEeecCCC--CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccCCcEEE
Q 020461 12 PLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLF 88 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~--~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~ 88 (326)
....+.|+ ++.++.+++.+| .|+++|.++++.+..+.-.. ......+.++++.|+... .++.+.+||.++.+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 34788998 777788888876 99999999999988775432 333322223344554444 58899999999988776
Q ss_pred EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (326)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~ 168 (326)
.+...... ..+.++++.|+....++
T Consensus 122 ti~~~~eG-------------------------------------------------------~glt~dg~~L~~SdGs~ 146 (262)
T 3nol_A 122 SFNYDGEG-------------------------------------------------------WGLTHNDQYLIMSDGTP 146 (262)
T ss_dssp EEECSSCC-------------------------------------------------------CCEEECSSCEEECCSSS
T ss_pred EEECCCCc-------------------------------------------------------eEEecCCCEEEEECCCC
Confidence 65432100 01123445555555578
Q ss_pred cEEEEECCCCcccccccccc-Ccc-eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-------------c
Q 020461 169 IVRIWDTETGKLLKESDKET-GHK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------R 233 (326)
Q Consensus 169 ~i~~wd~~~~~~~~~~~~~~-~h~-~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------~ 233 (326)
.|.++|..+.+....+.... +.. ..+..+.+. +|...+..-.++.|.+.|.++++.+..+... .
T Consensus 147 ~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~ 225 (262)
T 3nol_A 147 VLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID 225 (262)
T ss_dssp EEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred eEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence 89999999887776654321 111 223346665 6755544446889999999999999888642 1
Q ss_pred ceEEEEeCCCCCeeEEecCC
Q 020461 234 PVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 234 ~~~~~~~s~~~~~~~~~~~~ 253 (326)
-.++++++|..+.++++|..
T Consensus 226 vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 226 VLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp CEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEECCC
Confidence 35899999999999888754
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.01 E-value=6.3e-08 Score=80.21 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=114.8
Q ss_pred eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc---Cc-ccceEEEEEcCCCCeEEE----EeCC---
Q 020461 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GH-NGAVWCCDVSRDSMTLIT----GSAD--- 73 (326)
Q Consensus 5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~---~h-~~~V~~~~~~~~~~~l~s----~~~d--- 73 (326)
.+..+...+..++++++|+++++...++.|.+|+.. +....... +. ...+..++++++|++.+| |..+
T Consensus 80 ~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~ 158 (305)
T 3dr2_A 80 VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQ 158 (305)
T ss_dssp EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGG
T ss_pred EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccc
Confidence 344556678899999999988777677889999875 54322111 11 123567888888887765 2211
Q ss_pred ----------CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec
Q 020461 74 ----------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (326)
Q Consensus 74 ----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (326)
+.|..||..+++.. ...
T Consensus 159 ~~~~~~~~~~~~v~~~d~~~g~~~----------------------------------------------------~~~- 185 (305)
T 3dr2_A 159 GCPADPELAHHSVYRLPPDGSPLQ----------------------------------------------------RMA- 185 (305)
T ss_dssp SCCCCCSSSCEEEEEECSSSCCCE----------------------------------------------------EEE-
T ss_pred ccccccccCCCeEEEEcCCCCcEE----------------------------------------------------EEe-
Confidence 12222222222110 000
Q ss_pred cCccceeEEEEecCCcEEEEeeCC------CcEEEEECCCCcccccccc-ccCcceeeEEEEEcCCCCeEEEEeCCCeEE
Q 020461 144 GPQGRINRAVWGPLNRTIISAGED------AIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (326)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~ 216 (326)
.....+.++|+|+++.|+.+... +.|.+||+..+. +..... ..........++++++|... +++.+ .|.
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~ 261 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVC 261 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEE
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEE
Confidence 11234568899999877766554 789999986543 211000 00112334578899999844 44455 499
Q ss_pred EeecCCcceEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461 217 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 217 iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
+||. .++.+..+..+..+..++|+++++.++++..
T Consensus 262 ~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 262 VFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred EECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 9998 4667777765556888899988877777643
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.99 E-value=5.2e-07 Score=83.14 Aligned_cols=199 Identities=12% Similarity=0.112 Sum_probs=113.1
Q ss_pred CCEEEeecCCCCeEEEecCCCCeeeeccCccc----------ce-EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----------AV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~----------~V-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
+..++.++.++.|.-+|.++|+.+=.+..+.. .+ ..+.+ ++..++.++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 55677777888999999999987655433221 11 11222 3557888999999999999999998877
Q ss_pred ecC-CCc-----ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec---------------------
Q 020461 91 NFD-SPA-----RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--------------------- 143 (326)
Q Consensus 91 ~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 143 (326)
... ... .+.-...++.+++............+...+. .+++.+-...
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~------~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDA------ETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET------TTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEEC------CCCcEEEEecccCCCcccccccccccccccc
Confidence 653 111 1111112344433222110000111111110 0111111111
Q ss_pred ----------cCccceeEEEEecCCcEEEEeeCCCc-------------------EEEEECCCCccccccccccCcc---
Q 020461 144 ----------GPQGRINRAVWGPLNRTIISAGEDAI-------------------VRIWDTETGKLLKESDKETGHK--- 191 (326)
Q Consensus 144 ----------~~~~~i~~~~~~~~~~~l~s~~~d~~-------------------i~~wd~~~~~~~~~~~~~~~h~--- 191 (326)
++...-..+.++|+...++.+..++. |..||.++|+.+-.+... .|.
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-~~d~wd 300 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-PGDAWD 300 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-TTCCSC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-Cccccc
Confidence 11111135778898888888887764 999999999876443211 121
Q ss_pred ----eeeEEEEEcCCCC---eEEEEeCCCeEEEeecCCcceEEEE
Q 020461 192 ----KTITSLAKAADGS---HFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 192 ----~~v~~v~~s~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
....-.....+|. .++.++.+|.++++|.++++.+...
T Consensus 301 ~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 301 YTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred ccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 1222223333554 7889999999999999999987543
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.97 E-value=3.1e-07 Score=84.43 Aligned_cols=200 Identities=13% Similarity=0.069 Sum_probs=114.9
Q ss_pred CCEEEeecCCCCeEEEecCCCCeeeeccCccc----------ce-EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----------AV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~----------~V-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
+..|+.++.++.|.-+|.++|+.+=.++.... .+ ..+++ ++..++.++.|+.+..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45566677788999999999987644432211 01 12233 3567888899999999999999998877
Q ss_pred ecC-C-----CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec---------------------
Q 020461 91 NFD-S-----PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--------------------- 143 (326)
Q Consensus 91 ~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 143 (326)
... . .....-...++.+++............+...+. .+++.+....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~------~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDA------ETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET------TTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEEC------CCCcEEEEeccCCCCcccccccccccccccc
Confidence 654 1 111111122444443322110000111111111 1111111111
Q ss_pred -----------cCccceeEEEEecCCcEEEEeeCCC-------------------cEEEEECCCCccccccccccCc---
Q 020461 144 -----------GPQGRINRAVWGPLNRTIISAGEDA-------------------IVRIWDTETGKLLKESDKETGH--- 190 (326)
Q Consensus 144 -----------~~~~~i~~~~~~~~~~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~h--- 190 (326)
+.......++++|++..++.+..++ +|..+|.++|+..-.+.. ..|
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~-~~~d~w 307 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE-TPGDNW 307 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES-STTCCS
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec-CCCccc
Confidence 1111123577889888888776654 599999999987644321 112
Q ss_pred ----ceeeEEEEEcCCC---CeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 191 ----KKTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 191 ----~~~v~~v~~s~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
.....-+....+| ..++.++.+|.++++|.++++.+..+.
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 1122223333467 689999999999999999999987764
No 229
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.94 E-value=2.7e-07 Score=77.76 Aligned_cols=217 Identities=10% Similarity=-0.018 Sum_probs=127.5
Q ss_pred ecCCceeEEEEccCCCEEEeecC-----CCCeEEEecCCCCeeeeccC------cccceEEEEEcCCCCe-EEEEe---C
Q 020461 8 GHERPLTYLKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRG------HNGAVWCCDVSRDSMT-LITGS---A 72 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s~~~-----d~~v~iw~~~~~~~~~~~~~------h~~~V~~~~~~~~~~~-l~s~~---~ 72 (326)
+|...+..++|+++++++++-.. ++.|.+||.++++.+..+.- +...+..+++++++.. .++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 45677899999999987665433 57899999999887665532 2234678999976544 45544 6
Q ss_pred CCcEEEEEccCCcEEEEEecCCCcc--eeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcccee
Q 020461 73 DQTAKLWNVETGAQLFTFNFDSPAR--SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (326)
Q Consensus 73 d~~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (326)
++.|.+||+.+++....+..+.... ...+..+...+... .. .+. ... ....++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~------------------~~---~g~-~~~---~~~~~~ 198 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG------------------QP---DGT-VIR---PHLGVN 198 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEE------------------CT---TSC-EEC---CCCCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEec------------------cC---CCc-eec---eecccc
Confidence 7899999998887654432110000 01111111110000 00 000 000 012356
Q ss_pred EEEEecCCcEEEEeeCCC-cEEEEECC---CCcc-----ccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461 151 RAVWGPLNRTIISAGEDA-IVRIWDTE---TGKL-----LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 151 ~~~~~~~~~~l~s~~~d~-~i~~wd~~---~~~~-----~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~ 221 (326)
.++++|+++.|+.+..++ .|..++.. .+.. ...+. ..++......++++++|..+++...++.|..||.+
T Consensus 199 gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 199 GIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA 277 (343)
T ss_dssp EEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred eeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECC
Confidence 799999999888776665 44444421 1110 00010 11233346678999999999999899999999985
Q ss_pred CcceEEEEee--ccceEEEEeCCCCCeeEEe
Q 020461 222 TLELIKTYVT--ERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 222 ~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~ 250 (326)
+++....... ...+..+++.+++...+++
T Consensus 278 ~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 278 DRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp TTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred CCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence 5653222222 2347889998876554444
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.93 E-value=6.4e-07 Score=75.74 Aligned_cols=215 Identities=9% Similarity=-0.015 Sum_probs=127.1
Q ss_pred CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEEccCCcEEEEEecC--------C
Q 020461 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETGAQLFTFNFD--------S 94 (326)
Q Consensus 33 ~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~--------~ 94 (326)
+|.+.|..+++.+.++..-..+ .+.++||+++++.+. .+++|.+||+.+++.+..+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7779999999999988755556 699999999988886 3788999999999988887643 2
Q ss_pred CcceeeeecCCeEEEEEcC---cccee---ceeeeeeeeccCC--------------CCCCCceE-EEeccC---cccee
Q 020461 95 PARSVDFAVGDKLAVITTD---PFMEL---NSAIHVKRIARDP--------------ADQGGESV-LILKGP---QGRIN 150 (326)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~---~~~i~ 150 (326)
....+.++++.+.++++.. ....+ +... +..+.-.. ....+... ..+... .+.+.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~ 203 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence 2456677777665554421 11111 1111 11111000 00000000 001000 00000
Q ss_pred ------------EEEEecCCcEEEEeeCCCcEEEEECCCCc--ccccccccc----Ccc---eeeEEEEEcCCCCeEEEE
Q 020461 151 ------------RAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESDKET----GHK---KTITSLAKAADGSHFLTG 209 (326)
Q Consensus 151 ------------~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~----~h~---~~v~~v~~s~~~~~l~s~ 209 (326)
-.. .+++..++..+. +.|.+.|..++. ....+.... .+. .....+++++++..+..+
T Consensus 204 ~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 204 AQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred EEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 002 445555555555 888888886432 111111000 011 111226799999988865
Q ss_pred eC---------CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461 210 SL---------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (326)
Q Consensus 210 s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 252 (326)
.. ++.+.++|+++.+.+..+........++++|++..++++..
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~ 333 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEcc
Confidence 43 23566999999999999887778999999999987666554
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.91 E-value=2.6e-06 Score=71.16 Aligned_cols=198 Identities=12% Similarity=0.016 Sum_probs=114.8
Q ss_pred eEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCC
Q 020461 55 VWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133 (326)
Q Consensus 55 V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (326)
..++.|+|+++ ++++...++.|..||..+++.. .+.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~------------------------------------------ 87 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA------------------------------------------ 87 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE------------------------------------------
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE------------------------------------------
Confidence 45678888754 5566667788888988765421 110
Q ss_pred CCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccccc-CcceeeEEEEEcCCCCeEEEEeC-
Q 020461 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSL- 211 (326)
Q Consensus 134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l~s~s~- 211 (326)
....+.++.++|+++++++. .+ .|.+||..+++......... .....+..++++++|.+.++...
T Consensus 88 -----------~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~ 154 (326)
T 2ghs_A 88 -----------LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGR 154 (326)
T ss_dssp -----------CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEET
T ss_pred -----------CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC
Confidence 01235667788888766654 34 49999988776432111111 12346889999999987665542
Q ss_pred -----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeeccc--Cc-eeeeEeecccceeeecc
Q 020461 212 -----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--AG-KFEAKFFDKILQEEIGG 283 (326)
Q Consensus 212 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~--~~-~~~~~~~~~~~~~~~~~ 283 (326)
.+.|..++ +++...........+.++++|+++.++++..... .+..+|.. .+ ... ....+..
T Consensus 155 ~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~-~I~~~d~~~~~Gl~~~-------~~~~~~~ 224 (326)
T 2ghs_A 155 KAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN-RLMRVPLDARTGLPTG-------KAEVFID 224 (326)
T ss_dssp TCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC-EEEEEEBCTTTCCBSS-------CCEEEEE
T ss_pred cCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC-EEEEEEcccccCCccc-------CceEEEE
Confidence 24555555 4443322222345788999999987766543322 23333321 11 110 0011111
Q ss_pred ccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
+.........++++++|.++++...++.|..|+.+
T Consensus 225 ~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 225 STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 12223456789999999988777667778777653
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=6.8e-07 Score=82.21 Aligned_cols=237 Identities=14% Similarity=0.112 Sum_probs=131.8
Q ss_pred CCCEEEeecCCCCeEEEecCCCCeeeeccCc-c----cceEE-EEEcCCCCeEEEEeC------CCcEEEEEccCCcEEE
Q 020461 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGH-N----GAVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLF 88 (326)
Q Consensus 21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h-~----~~V~~-~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~ 88 (326)
++..++.++.|+.+..+|.++|+.+-.+..+ . ..+.+ ... .++ .++.++. ++.|..+|..+|+.+.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKG-KVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECC-EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3567888889999999999999987665543 1 12221 111 133 4555443 7999999999999988
Q ss_pred EEecCCCcc---------------------------------eeeeecCCeEEEEEc-Cccc-e------------ecee
Q 020461 89 TFNFDSPAR---------------------------------SVDFAVGDKLAVITT-DPFM-E------------LNSA 121 (326)
Q Consensus 89 ~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~-~~~~-~------------~~~~ 121 (326)
.+....+.. ...+.+....+.+.. ++.. . ....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 776432210 112233333333222 2100 0 0000
Q ss_pred eeeeeeccCCCCCCCceEEEecc--Cc-------cceeEEEEecCC---cEEEEeeCCCcEEEEECCCCcccccccccc-
Q 020461 122 IHVKRIARDPADQGGESVLILKG--PQ-------GRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLKESDKET- 188 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~- 188 (326)
+.. .+. .+++....+.. |. ....-+....+| +.++.++.+|.+.++|.++|+.+.......
T Consensus 285 v~A----lD~--~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 358 (677)
T 1kb0_A 285 IVA----LDP--DTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV 358 (677)
T ss_dssp EEE----ECT--TTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred EEE----EEC--CCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc
Confidence 111 111 12333333221 11 111222233356 578899999999999999998764432110
Q ss_pred -------Cccee------------------------eEEEEEcCCCCeEEEEeCC-------------------------
Q 020461 189 -------GHKKT------------------------ITSLAKAADGSHFLTGSLD------------------------- 212 (326)
Q Consensus 189 -------~h~~~------------------------v~~v~~s~~~~~l~s~s~d------------------------- 212 (326)
..... -..++++|++.++++...+
T Consensus 359 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence 00000 1256788888888775432
Q ss_pred ------------------CeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCce
Q 020461 213 ------------------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 267 (326)
Q Consensus 213 ------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~ 267 (326)
|.|..||+++++.+-++....+.....+...+..++++. .++ .+..+|.+.++
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~-~dg-~l~a~D~~tG~ 509 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT-ADG-RLVAYHAATGE 509 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC-TTS-EEEEEETTTCC
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC-CCC-cEEEEECCCCc
Confidence 789999999999988887665555555666666666653 222 33444544443
No 233
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.86 E-value=1.8e-06 Score=67.90 Aligned_cols=184 Identities=11% Similarity=0.055 Sum_probs=120.4
Q ss_pred CceeEEEEccCCCEEEeecCC--CCeEEEecCCCCeeeeccCcccc-eEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKD--HTPTVWFADNGERLGTYRGHNGA-VWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d--~~v~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
.....+.|+. +.++.+++.+ ..|+.+|.++++.+....-.... -..+++.. ++.....-.++.+.+||.++.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEE
Confidence 3467899987 6777777775 48999999999998776543221 12344432 333444557889999999998877
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 167 (326)
..+...... ..+.++++.|+.+..+
T Consensus 99 ~ti~~~~~G-------------------------------------------------------wglt~dg~~L~vSdgs 123 (243)
T 3mbr_X 99 ARFRYPGEG-------------------------------------------------------WALTSDDSHLYMSDGT 123 (243)
T ss_dssp EEEECSSCC-------------------------------------------------------CEEEECSSCEEEECSS
T ss_pred EEEeCCCCc-------------------------------------------------------eEEeeCCCEEEEECCC
Confidence 665432100 0112234445545558
Q ss_pred CcEEEEECCCCccccccccccCcce---eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec------------
Q 020461 168 AIVRIWDTETGKLLKESDKETGHKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------------ 232 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------ 232 (326)
+.|.++|..+.+....+.... +.. .+..+.+. +|...+..-.+..|.+.|.++++.+..+...
T Consensus 124 ~~l~~iDp~t~~~~~~I~V~~-~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~ 201 (243)
T 3mbr_X 124 AVIRKLDPDTLQQVGSIKVTA-GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDS 201 (243)
T ss_dssp SEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCT
T ss_pred CeEEEEeCCCCeEEEEEEEcc-CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCC
Confidence 889999999887766554321 222 23445544 5654444446789999999999998887632
Q ss_pred --cceEEEEeCCCCCeeEEecCC
Q 020461 233 --RPVNAVTMSPLLDHVVLGGGQ 253 (326)
Q Consensus 233 --~~~~~~~~s~~~~~~~~~~~~ 253 (326)
.-.|+++++|..+.++++|..
T Consensus 202 ~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 202 TNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TSSCEEEEEEETTTTEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEECCC
Confidence 136899999999998888754
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.80 E-value=2.5e-05 Score=66.47 Aligned_cols=265 Identities=10% Similarity=0.103 Sum_probs=136.5
Q ss_pred CCCEEEeecCCCCeEEEecCCCCeeeeccCc---------ccceE-EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGH---------NGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h---------~~~V~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
++..++.++.++.|..+|.++|+.+-.+... ...+. .+.. ++..++.++.++.|..+|.++++.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 3567777888899999999999876444321 12232 2222 3557888889999999999999988776
Q ss_pred ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc-----eeEEEEecCCcEEEEee
Q 020461 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR-----INRAVWGPLNRTIISAG 165 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~s~~ 165 (326)
.........-...++.+.+...+..+ ...+. ..++........... ....... +..++.+.
T Consensus 130 ~~~~~~~~~p~~~~~~v~v~~~~g~l------~~~d~------~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~ 195 (376)
T 3q7m_A 130 KVAGEALSRPVVSDGLVLIHTSNGQL------QALNE------ADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG 195 (376)
T ss_dssp ECSSCCCSCCEEETTEEEEECTTSEE------EEEET------TTCCEEEEEECCC-----CCCCCCEEE--TTEEEECC
T ss_pred eCCCceEcCCEEECCEEEEEcCCCeE------EEEEC------CCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc
Confidence 65433322212234444443322211 11100 111222111111000 0111111 35677788
Q ss_pred CCCcEEEEECCCCccccccccccCcc----eeeEEEEEcC--CCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEE
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHK----KTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~----~~v~~v~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 239 (326)
.++.|..+|..+++..-......... ..+..+...| .+..++.++.++.+..+|.++++.+....... .....
T Consensus 196 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~ 274 (376)
T 3q7m_A 196 DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFI 274 (376)
T ss_dssp TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEE
T ss_pred CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCce
Confidence 89999999999887654332110000 0000011111 24578888889999999999998876654322 22222
Q ss_pred eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
. .++.++++...+ .+..+|...+.. .|.... . ....+..... .+..|..++.+|.|..++...
T Consensus 275 ~--~~~~l~~~~~~g--~l~~~d~~tG~~---~w~~~~------~--~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 275 V--DGNRIYLVDQND--RVMALTIDGGVT---LWTQSD------L--LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp E--ETTEEEEEETTC--CEEEEETTTCCE---EEEECT------T--TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred E--ECCEEEEEcCCC--eEEEEECCCCcE---EEeecc------c--CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 2 345555544322 233445444432 222110 0 0011111222 245666777788887766544
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.77 E-value=5.4e-06 Score=70.98 Aligned_cols=164 Identities=15% Similarity=0.087 Sum_probs=101.6
Q ss_pred EEEecCCcEEEEeeCC------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe---------------
Q 020461 152 AVWGPLNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--------------- 210 (326)
Q Consensus 152 ~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s--------------- 210 (326)
+...|++ .++++..+ +.|.++|.++++.+.......+-...-..+-|+|+++.+++..
T Consensus 143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~ 221 (462)
T 2ece_A 143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH 221 (462)
T ss_dssp EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence 4556777 66665555 7899999999888776643222222234577899999888885
Q ss_pred ----CCCeEEEeecCCcceEEEEeec---cceEEEE--eCCCCCeeEEecC-----CCc-ceeEeecccCceeeeE-eec
Q 020461 211 ----LDKSAKLWDARTLELIKTYVTE---RPVNAVT--MSPLLDHVVLGGG-----QDA-SAVTTTDHRAGKFEAK-FFD 274 (326)
Q Consensus 211 ----~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~--~s~~~~~~~~~~~-----~~~-~~~~~~d~~~~~~~~~-~~~ 274 (326)
.+.+|.+||+.+++.++++... .....+. ++|++...+++.. .+. ..+..+|. +.+... ..+
T Consensus 222 ~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vId 299 (462)
T 2ece_A 222 LKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIE 299 (462)
T ss_dssp HHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEE
T ss_pred hhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEe
Confidence 3789999999998888887654 2334444 4999998877654 332 22222332 332221 111
Q ss_pred ccceeeeccc-------cccCcceeEEEECCCCceEEeecC-CCcEEEeecC
Q 020461 275 KILQEEIGGV-------KGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFD 318 (326)
Q Consensus 275 ~~~~~~~~~~-------~~h~~~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~ 318 (326)
.........+ .+-......|.+||||++|..+.. .+.|+++++.
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 1111100000 011234688999999999866655 7899999885
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.76 E-value=2.2e-06 Score=71.36 Aligned_cols=265 Identities=14% Similarity=0.081 Sum_probs=135.8
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
+.++...+++.+++ ++.+ +..+|. +++.+..+...........+. +..++.++.++.+..+|.+ ++.......
T Consensus 62 ~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~ 134 (330)
T 3hxj_A 62 ECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKT 134 (330)
T ss_dssp EECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred ccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC
Confidence 34555566666444 4444 777775 565544444333333333333 4467778888899999988 776655543
Q ss_pred CCC-cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEE
Q 020461 93 DSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (326)
Q Consensus 93 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~ 171 (326)
... ........++.+.+...+.. +.... . . +............+..+...+++...+.. +.|.
T Consensus 135 ~~~~~~~~~~~~~g~l~vgt~~~~------l~~~d----~--~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~ 198 (330)
T 3hxj_A 135 KKAIYATPIVSEDGTIYVGSNDNY------LYAIN----P--D-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVY 198 (330)
T ss_dssp SSCCCSCCEECTTSCEEEECTTSE------EEEEC----T--T-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEE
T ss_pred CCceeeeeEEcCCCEEEEEcCCCE------EEEEC----C--C-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEE
Confidence 322 22233333444444332111 11110 0 1 22333333334455666676777655443 7799
Q ss_pred EEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-ceEEEEeCCCCCeeEEe
Q 020461 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 172 ~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~ 250 (326)
.+| .+++...... .....+.++..+++| .+..++.++.|..+|. +++.+..+.... ....+...+++ .++++
T Consensus 199 ~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~ 271 (330)
T 3hxj_A 199 AIN-PDGTEKWNFY---AGYWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFG 271 (330)
T ss_dssp EEC-TTSCEEEEEC---CSSCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEE
T ss_pred EEC-CCCcEEEEEc---cCCcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEe
Confidence 999 6665543322 123457778888887 4666777888888885 455555554322 22334444333 34444
Q ss_pred cCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461 251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 323 (326)
Q Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~ 323 (326)
...++ +..+|. .+.. +|. .......+.++...++|..++ |+.+|.+++...+.+.+.
T Consensus 272 t~~gg--l~~~d~-~g~~---~~~---------~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~~~~~ 328 (330)
T 3hxj_A 272 SYDGH--LYAINP-DGTE---KWN---------FETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLEHHHH 328 (330)
T ss_dssp CTTCE--EEEECT-TSCE---EEE---------EECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC------
T ss_pred cCCCC--EEEECC-CCcE---EEE---------EEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccccccc
Confidence 33222 223332 2221 111 111234567788877777554 888999999777665543
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.70 E-value=1.2e-08 Score=86.84 Aligned_cols=181 Identities=15% Similarity=0.106 Sum_probs=83.0
Q ss_pred CCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe
Q 020461 63 DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (326)
Q Consensus 63 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (326)
++..+++++.|+.|..||..+|+.+..+.. .+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~--------------------------------------------- 41 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL--------------------------------------------- 41 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC---------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce---------------------------------------------
Confidence 467899999999999999999988765432 1100
Q ss_pred ccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeE-EEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~~~l~s~s~dg~i~iwd~~ 221 (326)
+..+.+++..+++++.|+.|..||.++++.+...... ....+. +.... ++..+++++.|+.++.||.+
T Consensus 42 --------s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~--~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~ 110 (369)
T 2hz6_A 42 --------QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT--IPELVQASPCRS-SDGILYMGKKQDIWYVIDLL 110 (369)
T ss_dssp --------CCC-----CCEEECTTTCCEEEC-----CCSEECSCC--HHHHHTTCSCC------CCCCEEEEEEEEECCC
T ss_pred --------ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc--CccccccCceEe-cCCEEEEEeCCCEEEEEECC
Confidence 0011123456777789999999999888764333211 011111 11111 34568889999999999999
Q ss_pred CcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC-
Q 020461 222 TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG- 300 (326)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~- 300 (326)
+++.+..+.... ...++|.++.++++.. + ..+..+|.+.+... |.... . .....+++++.
T Consensus 111 tG~~~w~~~~~~---~~~~~p~~~~v~~~~~-d-g~v~a~d~~tG~~~---W~~~~-------~----~~~~~~~~~~~~ 171 (369)
T 2hz6_A 111 TGEKQQTLSSAF---ADSLSPSTSLLYLGRT-E-YTITMYDTKTRELR---WNATY-------F----DYAASLPEDDVD 171 (369)
T ss_dssp -------------------------EEEEEE-E-EEEECCCSSSSSCC---CEEEE-------E----EECCBCCCCCTT
T ss_pred CCcEEEEecCCC---cccccccCCEEEEEec-C-CEEEEEECCCCCEE---EeEec-------c----cccCccccCCcc
Confidence 999887765432 2344565555555432 2 22344454444321 11110 0 01122333332
Q ss_pred --ceEEeecCCCcEEEeecCC
Q 020461 301 --KSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 301 --~~lat~s~Dg~i~l~~~~~ 319 (326)
..+++++.||.|..|+...
T Consensus 172 ~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 172 YKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp CCCCEEEEETSCEEEEECTTT
T ss_pred ccceEEEECCCCEEEEEECCC
Confidence 4566677888888876543
No 238
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.69 E-value=1.2e-05 Score=68.43 Aligned_cols=189 Identities=13% Similarity=0.120 Sum_probs=105.1
Q ss_pred CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcc---
Q 020461 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR--- 97 (326)
Q Consensus 21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~--- 97 (326)
++..++.++.++.+..+|.++|+.+-............... +..++.++.++.+..+|..+++.+.......+..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 45667778889999999999998765544332221122222 3477788899999999999999887766543321
Q ss_pred --eeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc--c-----ceeEEEEec--CCcEEEEeeC
Q 020461 98 --SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ--G-----RINRAVWGP--LNRTIISAGE 166 (326)
Q Consensus 98 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~i~~~~~~~--~~~~l~s~~~ 166 (326)
..-...++.+.+...+.. +...+. ..++......... + .+..+.-.| .+..++.++.
T Consensus 180 ~~~~~~~~~~~v~~g~~~g~------l~~~d~------~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~ 247 (376)
T 3q7m_A 180 GESAPTTAFGAAVVGGDNGR------VSAVLM------EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY 247 (376)
T ss_dssp CCCCCEEETTEEEECCTTTE------EEEEET------TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT
T ss_pred CCCCcEEECCEEEEEcCCCE------EEEEEC------CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec
Confidence 111112333333221111 100000 0111111111000 0 000000011 2456777888
Q ss_pred CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
++.+..+|.++++..-.... .....+.. ++..+..++.++.|..+|.++++.+....
T Consensus 248 ~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 248 NGNLTALDLRSGQIMWKREL-----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp TSCEEEEETTTCCEEEEECC-----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred CcEEEEEECCCCcEEeeccC-----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 99999999998876543321 11223333 35678888899999999999998876654
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.66 E-value=1.2e-06 Score=77.60 Aligned_cols=215 Identities=9% Similarity=-0.040 Sum_probs=126.4
Q ss_pred cCCCEEEeec-CCCCeEEEecCCCCeeeeccCc-ccceEEEEE-c-CCCCeEEEEe------------------CCCcEE
Q 020461 20 KDGDLLFSCA-KDHTPTVWFADNGERLGTYRGH-NGAVWCCDV-S-RDSMTLITGS------------------ADQTAK 77 (326)
Q Consensus 20 ~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~h-~~~V~~~~~-~-~~~~~l~s~~------------------~d~~i~ 77 (326)
+||++|+.+. .++.|.+-|+.+.++...+.-- ......+++ + |++++++.++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4888777655 4567889999999887744321 234667777 5 8999988885 245788
Q ss_pred EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (326)
Q Consensus 78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (326)
+.|..+.+....+........+.++++.+.++++......... +..... .....+.+..-.. ...+.++
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~---i~~~~~----~~~d~v~V~~~~~----~~~~v~~ 247 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMT---LPEMTA----AEMDHIVVFNIAE----IEKAIAA 247 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSS---HHHHTC----CSEEEEEEEEHHH----HHHHHHH
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcc---hhhccc----cccceEEEeeccc----eeEeccC
Confidence 8999988877766553334455666666666554432100000 000000 0000011110000 0012234
Q ss_pred CcEEEEeeCCCcEEEEECCC--Ccc-ccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcc---------
Q 020461 158 NRTIISAGEDAIVRIWDTET--GKL-LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE--------- 224 (326)
Q Consensus 158 ~~~l~s~~~d~~i~~wd~~~--~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~--------- 224 (326)
|+.... +.|.+.|.++ ++. ...+. -.....++.++|||+++++++ .+.+|.++|+++.+
T Consensus 248 Gk~~~i----~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 248 GDYQEL----NGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp TCSEEE----TTEEEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred CCeeEE----CcEEEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 443332 4599999987 433 22221 123467899999999877665 58899999999763
Q ss_pred ---eEEEEeeccceEEEEeCCCCCeeEEecCCC
Q 020461 225 ---LIKTYVTERPVNAVTMSPLLDHVVLGGGQD 254 (326)
Q Consensus 225 ---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 254 (326)
.+.+.....-...++|++++ .++++-.-+
T Consensus 320 ~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ld 351 (595)
T 1fwx_A 320 RSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLD 351 (595)
T ss_dssp GGGEEECCBCCSCEEEEEECTTS-EEEEEETTT
T ss_pred ccceEEEcCCCCCcceEEECCCC-eEEEEEecC
Confidence 34445555668889999999 665554333
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.66 E-value=4.2e-05 Score=63.56 Aligned_cols=250 Identities=10% Similarity=-0.000 Sum_probs=133.3
Q ss_pred eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC--------------------cccceEEEEEcC-CC
Q 020461 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--------------------HNGAVWCCDVSR-DS 64 (326)
Q Consensus 6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~--------------------h~~~V~~~~~~~-~~ 64 (326)
+.+.......+++++++++++++..++.|..|+..++... .+.. .......+++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 4444455678899999997888888899999987765432 2210 112467888987 55
Q ss_pred CeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 65 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
+ |+.+...+.+..+|..+++........ . + .
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~~~~~~~~---------~--------------------------------~-------~ 123 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHATQLATSV---------D--------------------------------G-------V 123 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEECEEEESEE---------T--------------------------------T-------E
T ss_pred c-EEEEECCCCEEEEeCCCCEEEEecccC---------C--------------------------------C-------C
Confidence 4 555554455777776544321100000 0 0 0
Q ss_pred CccceeEEEEec-CCcEEEEee-----------------CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE
Q 020461 145 PQGRINRAVWGP-LNRTIISAG-----------------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF 206 (326)
Q Consensus 145 ~~~~i~~~~~~~-~~~~l~s~~-----------------~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l 206 (326)
.....+.+++.| ++...++-. .++.|..||..+++...... .......+++++++..|
T Consensus 124 ~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~----~~~~p~gia~~~dg~~l 199 (322)
T 2fp8_A 124 PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK----ELHVPGGAEVSADSSFV 199 (322)
T ss_dssp ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE----EESCCCEEEECTTSSEE
T ss_pred cccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc----CCccCcceEECCCCCEE
Confidence 011234456666 665544432 23678888876654321111 11234578999999865
Q ss_pred EEE-eCCCeEEEeecCCcc--eEEEEe-eccceEEEEeCCCCCeeEEecCC--------CcceeEeecccCceeeeEeec
Q 020461 207 LTG-SLDKSAKLWDARTLE--LIKTYV-TERPVNAVTMSPLLDHVVLGGGQ--------DASAVTTTDHRAGKFEAKFFD 274 (326)
Q Consensus 207 ~s~-s~dg~i~iwd~~~~~--~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~ 274 (326)
..+ +.++.|..+++.... ....+. ... ...+++.+++...++.... ....+..+|.. +... ..
T Consensus 200 yv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~-~~-- 274 (322)
T 2fp8_A 200 LVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNIL-EV-- 274 (322)
T ss_dssp EEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEE-EE--
T ss_pred EEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEE-EE--
Confidence 544 567899999987421 111111 223 7788888888643332220 01122233321 1111 11
Q ss_pred ccceeeecccccc-CcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461 275 KILQEEIGGVKGH-FGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 275 ~~~~~~~~~~~~h-~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~ 321 (326)
+....+. ...+..+++ .++.++++....+.|..++.+..+
T Consensus 275 ------~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 275 ------IPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp ------EECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred ------EECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 1111111 234666777 467777777778888888776543
No 241
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.65 E-value=1.8e-06 Score=79.53 Aligned_cols=217 Identities=15% Similarity=0.108 Sum_probs=123.0
Q ss_pred eEEEEccCCCEEEeecCCCC-------------------eEEEecCCCCeeeeccC--cc-------cceEEEEEcCCCC
Q 020461 14 TYLKYNKDGDLLFSCAKDHT-------------------PTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM 65 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~-------------------v~iw~~~~~~~~~~~~~--h~-------~~V~~~~~~~~~~ 65 (326)
..++++|++.+++.+..++. |.-+|.++|+.+=.++. |. .+........+++
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 36788999998888888764 88899999988755543 21 1222222223554
Q ss_pred ---eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe
Q 020461 66 ---TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (326)
Q Consensus 66 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (326)
.++.++.+|.+.++|..+|+.+....+........+...... .+......... ..+......
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~-------------pi~~~~~~~~~--~~~~~~~~~ 382 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGR-------------PILDEENAAYW--KNGKRNLVT 382 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTE-------------EEECHHHHCTT--TSSSCEEES
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCC-------------cccchhhcccc--CCCCeeEeC
Confidence 788999999999999999998876554321110000000000 00000000000 000111111
Q ss_pred ccCccc--eeEEEEecCCcEEEEee---------------------------------------------CCCcEEEEEC
Q 020461 143 KGPQGR--INRAVWGPLNRTIISAG---------------------------------------------EDAIVRIWDT 175 (326)
Q Consensus 143 ~~~~~~--i~~~~~~~~~~~l~s~~---------------------------------------------~d~~i~~wd~ 175 (326)
.+..+. -..++++|+.+.++... .+|+|..||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 111110 11245555555444331 1478999999
Q ss_pred CCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc--eEEEEeCCCCCeeEE
Q 020461 176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VNAVTMSPLLDHVVL 249 (326)
Q Consensus 176 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~ 249 (326)
++++..-.... ...+..-.+...+..++.|+.||.++.||.++++.+.++..... ..-+.+..++...++
T Consensus 463 ~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 463 VKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 99987654321 12233334455677899999999999999999999988865422 223555667765443
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.64 E-value=9.3e-06 Score=71.95 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=62.0
Q ss_pred eEEEeecCC--cce-EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCce--eeeEeecccceeeeccccccC
Q 020461 214 SAKLWDART--LEL-IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK--FEAKFFDKILQEEIGGVKGHF 288 (326)
Q Consensus 214 ~i~iwd~~~--~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~h~ 288 (326)
.|.+.|.++ +.. +..+.......++.++|++..+++++..+.. +..+|..... +.-++ +. ....+..+. -.
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l-~~-~~~v~~~v~-vG 330 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENA-DP-RSAVVAEPE-LG 330 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCC-CG-GGGEEECCB-CC
T ss_pred cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCe-EEEEECccccccccccc-Cc-ccceEEEcC-CC
Confidence 488889887 545 5666666788899999999998887654332 2333332110 00000 00 000011111 11
Q ss_pred cceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 289 GPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 289 ~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
...+.++|+|||....+.-.|++|..|+++.
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 2467899999995566777899999999876
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.61 E-value=1.6e-05 Score=63.67 Aligned_cols=208 Identities=14% Similarity=0.074 Sum_probs=125.4
Q ss_pred eeeeccCccc--ceEEEEEcCCCCeEEEEeC--CCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceec
Q 020461 44 RLGTYRGHNG--AVWCCDVSRDSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 119 (326)
Q Consensus 44 ~~~~~~~h~~--~V~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (326)
.+.++. |.. ....++|++++.+.++.+. +++|++.|+.+++.+..+........
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg--------------------- 68 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG--------------------- 68 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE---------------------
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce---------------------
Confidence 444553 332 3678999998755555553 57999999999987655432110000
Q ss_pred eeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (326)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~ 199 (326)
..+.+.. +...++...++.+.++|..+.+.+.++... ... ...+
T Consensus 69 ------------------------------eGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g---~~~--g~gl 112 (266)
T 2iwa_A 69 ------------------------------EGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ---MKD--GWGL 112 (266)
T ss_dssp ------------------------------EEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECC---SSS--CCEE
T ss_pred ------------------------------EEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECC---CCC--eEEE
Confidence 0011111 233445566889999999988877765422 111 2334
Q ss_pred cCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc------ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee
Q 020461 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTER------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (326)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (326)
++||..++.+..++.|.++|.++.+.+..+.... .++.+.+. ++ .+++.... ...+...|...+.....+
T Consensus 113 t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~-~~~V~vID~~tg~V~~~I- 188 (266)
T 2iwa_A 113 ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQ-TDCIARISAKDGTLLGWI- 188 (266)
T ss_dssp EECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETT-SSEEEEEETTTCCEEEEE-
T ss_pred EECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCC-CCeEEEEECCCCcEEEEE-
Confidence 5677777777778999999999999888876432 35677776 44 45544322 334555566555432221
Q ss_pred cccceeeeccc------ccc--CcceeEEEECCCCc-eEEeecCCCcEEEeecCC
Q 020461 274 DKILQEEIGGV------KGH--FGPINALAFNPDGK-SFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 274 ~~~~~~~~~~~------~~h--~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~ 319 (326)
+. ..+ ..+ ....+.|+|+|+++ .++|+...+++...++.+
T Consensus 189 ~~------~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 189 LL------PNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EC------HHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EC------CCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 11 111 001 12458999999976 578887888888766654
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.55 E-value=0.00013 Score=58.86 Aligned_cols=220 Identities=10% Similarity=0.030 Sum_probs=123.0
Q ss_pred CceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE-eCCCcEEEEEccCCcEEE
Q 020461 11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVETGAQLF 88 (326)
Q Consensus 11 ~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~ 88 (326)
..+..++|+++++ ++++-..++.|..++...+.....+...-.....+++++++..++.+ ...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3457899999655 55566667899999987654433333222456889999876555544 456789999987543322
Q ss_pred EEecC-CCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-EEee
Q 020461 89 TFNFD-SPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAG 165 (326)
Q Consensus 89 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~ 165 (326)
..... .....+.+.+ +..+.++..... ...+ .....+ ..... ..........+.++++|++..| ++-.
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~---~~~I--~~~~~d---g~~~~-~~~~~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRD---NPKI--ETSHMD---GTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSS---SCEE--EEEETT---SCCCE-EEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCC---CcEE--EEEecC---CCCcE-EEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence 22211 2334556666 344444432100 0111 111111 11111 1112233456789999987655 4555
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc--ceEEEEeCCC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSPL 243 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~s~~ 243 (326)
..+.|..+|........... . ......++.. ++..+++....+.|..+|..+++.+..+.... ....+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~-~---~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLE-G---LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEE-C---CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEec-C---CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 67899999987543222111 1 1223455554 34444444456899999999998888775432 3555666554
Q ss_pred C
Q 020461 244 L 244 (326)
Q Consensus 244 ~ 244 (326)
+
T Consensus 262 ~ 262 (267)
T 1npe_A 262 Q 262 (267)
T ss_dssp C
T ss_pred c
Confidence 3
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.54 E-value=5.1e-05 Score=60.20 Aligned_cols=201 Identities=9% Similarity=0.105 Sum_probs=115.4
Q ss_pred eeeeccCcc-cceEEEEEcCCCCeEEEEeCCC--cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceece
Q 020461 44 RLGTYRGHN-GAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120 (326)
Q Consensus 44 ~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
.+.++.... .....+.|+ ++.+..+.+.+| .|+.+|+++++.+.....+......
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fge--------------------- 90 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGE--------------------- 90 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEE---------------------
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcccee---------------------
Confidence 455553322 346788998 677777887766 8999999999887655432110000
Q ss_pred eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (326)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~ 199 (326)
-..+++. .......++.+.++|..+.+.+.++... + ....+
T Consensus 91 --------------------------------Git~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~-~-----eG~gl 132 (262)
T 3nol_A 91 --------------------------------GISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-G-----EGWGL 132 (262)
T ss_dssp --------------------------------EEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS-S-----CCCCE
T ss_pred --------------------------------EEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC-C-----CceEE
Confidence 0011122 2334456889999999999888776532 1 12233
Q ss_pred cCCCCeEEEEeCCCeEEEeecCCcceEEEEeec------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee
Q 020461 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (326)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (326)
.+|+..|+....++.|.++|.++.+.+..+... ..++.+.+. ++ .+++... ....+...|...+.....+-
T Consensus 133 t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w-~~~~I~vIDp~tG~V~~~Id 209 (262)
T 3nol_A 133 THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVW-QTNKIVRIDPETGKVTGIID 209 (262)
T ss_dssp EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET-TSSEEEEECTTTCBEEEEEE
T ss_pred ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEc-cCCeEEEEECCCCcEEEEEE
Confidence 356777777666888999999999998887642 224556665 34 4554432 33345566766665433221
Q ss_pred cccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461 274 DKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 307 (326)
Q Consensus 274 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s 307 (326)
......+......-..-.+.|||+|+++.|...+
T Consensus 210 ~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 210 LNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 1100000000000112458899999877654444
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.45 E-value=0.00027 Score=64.98 Aligned_cols=205 Identities=15% Similarity=0.129 Sum_probs=110.6
Q ss_pred CCEEEeecCCCCeEEEecCCCCeeeeccCccc----------ce-EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----------AV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~----------~V-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 90 (326)
+..++.++.++.|.-+|.++|+.+=.++.... .+ ..+++ .+..++.++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 45566677788888899999987644432211 01 11222 2457788889999999999999998877
Q ss_pred ecCCCc-----ceeeeecCCeEEEEEcCcc------c---eeceeeeeeeeccCCCCCCC----ceE------------E
Q 020461 91 NFDSPA-----RSVDFAVGDKLAVITTDPF------M---ELNSAIHVKRIARDPADQGG----ESV------------L 140 (326)
Q Consensus 91 ~~~~~~-----~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~----~~~------------~ 140 (326)
....+. ...-...++.+++...... + ........|.....+..... ..+ .
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 653211 0000112334333222110 0 00011112221110000000 000 0
Q ss_pred EeccCccceeEEEEecCCcEEEEeeCCC-------------------cEEEEECCCCccccccccccCcc-------eee
Q 020461 141 ILKGPQGRINRAVWGPLNRTIISAGEDA-------------------IVRIWDTETGKLLKESDKETGHK-------KTI 194 (326)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~h~-------~~v 194 (326)
...++......++++|....++.+..++ .|..+|.++|+..-..... .|. .+.
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT-PGDSWDFTATQQI 302 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-CCccccccCCCCc
Confidence 0001111123467888888888777665 3999999999876443321 121 222
Q ss_pred EEEEEcCCCC---eEEEEeCCCeEEEeecCCcceEEEE
Q 020461 195 TSLAKAADGS---HFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 195 ~~v~~s~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
....+..+|+ .++.++.+|.++++|.++++.+...
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 2223334564 6899999999999999999988544
No 247
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.42 E-value=1.2e-05 Score=66.90 Aligned_cols=201 Identities=12% Similarity=0.117 Sum_probs=109.7
Q ss_pred EEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCC
Q 020461 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP 95 (326)
Q Consensus 16 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 95 (326)
.....++. |..++.++.+..|| .+++....+......+.++...+++. ++.++.+ +..+|. +++....+.....
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~ 98 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKA 98 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCC
Confidence 34445565 55677788999999 88887766655555667777766665 4445554 778886 4443222211111
Q ss_pred c-ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEE
Q 020461 96 A-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174 (326)
Q Consensus 96 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd 174 (326)
. ....+. ++.+.+...+.. +.. + +. . +........+...+..+...+++. ++.++.++.|..+|
T Consensus 99 ~~~~~~~~-~~~l~v~t~~~~------l~~--~--d~--~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d 163 (330)
T 3hxj_A 99 IVSDFTIF-EDILYVTSMDGH------LYA--I--NT--D-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAIN 163 (330)
T ss_dssp --CCEEEE-TTEEEEECTTSE------EEE--E--CT--T-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEEC
T ss_pred cccCceEE-CCEEEEEecCCE------EEE--E--cC--C-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEEC
Confidence 1 111111 333333322211 110 1 00 1 222222333333455566666665 55577789999999
Q ss_pred CCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCC
Q 020461 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLD 245 (326)
Q Consensus 175 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~ 245 (326)
.. ++...... .....+.++..++++...+ ++ +.|..+| .+++.+..+... ..+.++...+++.
T Consensus 164 ~~-g~~~~~~~---~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~ 227 (330)
T 3hxj_A 164 PD-GTEKWRFK---TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT 227 (330)
T ss_dssp TT-SCEEEEEE---CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC
T ss_pred CC-CCEeEEEe---cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe
Confidence 88 66543332 1234466677777776544 44 7899999 677666555432 3456666666653
No 248
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.36 E-value=0.00013 Score=66.99 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=48.9
Q ss_pred EEEEcc-CCCEEEeecCCC-----------CeEEEecCCCCeee--eccC-cccceEEEEEcCCCCeEEEEe-CCCcEEE
Q 020461 15 YLKYNK-DGDLLFSCAKDH-----------TPTVWFADNGERLG--TYRG-HNGAVWCCDVSRDSMTLITGS-ADQTAKL 78 (326)
Q Consensus 15 ~~~~s~-~~~~l~s~~~d~-----------~v~iw~~~~~~~~~--~~~~-h~~~V~~~~~~~~~~~l~s~~-~d~~i~~ 78 (326)
++++.+ ++++++.|+.+. .+.+||..+++... .+.. +.....++++..+++.++.|| .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887543 57789988876532 2211 223334466778899888888 4568999
Q ss_pred EEccCCc
Q 020461 79 WNVETGA 85 (326)
Q Consensus 79 wd~~~~~ 85 (326)
||+.+++
T Consensus 270 yd~~t~~ 276 (656)
T 1k3i_A 270 YDSSSDS 276 (656)
T ss_dssp EEGGGTE
T ss_pred ecCcCCc
Confidence 9998764
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.29 E-value=0.00065 Score=53.39 Aligned_cols=190 Identities=16% Similarity=0.105 Sum_probs=109.7
Q ss_pred ceEEEEEcCCCCeEEEEeCC--CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCC
Q 020461 54 AVWCCDVSRDSMTLITGSAD--QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 131 (326)
Q Consensus 54 ~V~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (326)
.+..+.|++ +.+..+.+.+ ..|+.+|+.+++.+.....+......
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fge-------------------------------- 68 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGA-------------------------------- 68 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEE--------------------------------
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCccee--------------------------------
Confidence 477899986 5666777765 48999999999887655432211000
Q ss_pred CCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC
Q 020461 132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211 (326)
Q Consensus 132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~ 211 (326)
- +... .++.+.....++.+.++|..+.+.+.++... + .-..++ +++..|+.+..
T Consensus 69 ------G-------------i~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-~---~Gwglt--~dg~~L~vSdg 122 (243)
T 3mbr_X 69 ------G-------------IVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYP-G---EGWALT--SDDSHLYMSDG 122 (243)
T ss_dssp ------E-------------EEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECS-S---CCCEEE--ECSSCEEEECS
T ss_pred ------E-------------EEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-C---CceEEe--eCCCEEEEECC
Confidence 0 0000 1223344567889999999998888776532 2 123343 56666766667
Q ss_pred CCeEEEeecCCcceEEEEeec------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeeeccc
Q 020461 212 DKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGV 284 (326)
Q Consensus 212 dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~ 284 (326)
++.|.++|.++.+.+..+... ..++.+.+. ...+++.. .....+...|.+.+.....+ +... .......
T Consensus 123 s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanv-w~s~~I~vIDp~tG~V~~~i-dl~~l~~~~~~~ 198 (243)
T 3mbr_X 123 TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANV-WLTSRIARIDPASGKVVAWI-DLQALVPDADAL 198 (243)
T ss_dssp SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEE-TTTTEEEEECTTTCBEEEEE-ECGGGSTTTTSC
T ss_pred CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEE-CCCCeEEEEECCCCCEEEEE-ECCcCccccccc
Confidence 899999999999998887643 234555544 23444433 22334556676666543222 1110 0000000
Q ss_pred -cccCcceeEEEECCCCce-EEee
Q 020461 285 -KGHFGPINALAFNPDGKS-FSSG 306 (326)
Q Consensus 285 -~~h~~~v~~v~~s~d~~~-lat~ 306 (326)
..-..-.+.||++|+++. ++||
T Consensus 199 ~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 199 TDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cCCcCCceEEEEEcCCCCEEEEEC
Confidence 011124588999997665 4554
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.28 E-value=0.0011 Score=59.63 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=46.1
Q ss_pred CCEEEeecC-CCCeEEEec-CCCCeeeeccCccc----------ce-EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE
Q 020461 22 GDLLFSCAK-DHTPTVWFA-DNGERLGTYRGHNG----------AV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 22 ~~~l~s~~~-d~~v~iw~~-~~~~~~~~~~~h~~----------~V-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 88 (326)
+..++.++. ++.|.-+|. ++|+.+=.++.... .+ ..+++ ++..++.++.|+.+..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445556666 788888898 88887533321110 01 11222 25577888899999999999999987
Q ss_pred EEecC
Q 020461 89 TFNFD 93 (326)
Q Consensus 89 ~~~~~ 93 (326)
.....
T Consensus 140 ~~~~~ 144 (571)
T 2ad6_A 140 EVEVC 144 (571)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 76543
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.25 E-value=0.00013 Score=58.01 Aligned_cols=200 Identities=12% Similarity=0.096 Sum_probs=115.0
Q ss_pred CeeeeccCc-ccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceecee
Q 020461 43 ERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121 (326)
Q Consensus 43 ~~~~~~~~h-~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
+.+.++... ......+.|+ ++.+..+.+.+|.|+++|+++++.+... .+.....
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~Fg----------------------- 98 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFA----------------------- 98 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCE-----------------------
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcce-----------------------
Confidence 344455322 2346788887 4667788888899999999998865443 2211000
Q ss_pred eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201 (326)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 201 (326)
+- +.... ++.......++.+.++|..+.+.+.++... + .-..++ +
T Consensus 99 ---------------eG-------------it~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~---eGwGLt--~ 143 (268)
T 3nok_A 99 ---------------EG-------------LASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-G---EGWGLC--Y 143 (268)
T ss_dssp ---------------EE-------------EEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECS-S---CCCCEE--E
T ss_pred ---------------eE-------------EEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCC-C---ceeEEe--c
Confidence 00 00111 123344567889999999999888776532 2 123333 5
Q ss_pred CCCeEEEEeCCCeEEEeecCCcceEEEEeecc------ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecc
Q 020461 202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTER------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 275 (326)
Q Consensus 202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (326)
|+..|+.+..++.|.++|.++.+.+..+.... .++.+.+. ++ .+++.. .....+...|...+.....+ +.
T Consensus 144 Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanv-w~s~~I~vIDp~TG~V~~~I-dl 219 (268)
T 3nok_A 144 WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANI-WHSSDVLEIDPATGTVVGVI-DA 219 (268)
T ss_dssp ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEE-TTCSEEEEECTTTCBEEEEE-EC
T ss_pred CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEE-CCCCeEEEEeCCCCcEEEEE-EC
Confidence 67777777778999999999999998876432 34556665 34 455443 23334556676666543222 21
Q ss_pred c-ceeeecc-ccccCcceeEEEECCCCce-EEee
Q 020461 276 I-LQEEIGG-VKGHFGPINALAFNPDGKS-FSSG 306 (326)
Q Consensus 276 ~-~~~~~~~-~~~h~~~v~~v~~s~d~~~-lat~ 306 (326)
. ....... ...-..-.+.|||+|+++. ++||
T Consensus 220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 220 SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 1 0000000 0011124588999997665 5554
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.18 E-value=0.0035 Score=56.61 Aligned_cols=201 Identities=13% Similarity=0.101 Sum_probs=107.2
Q ss_pred CCEEEeecC-CCCeEEEec-CCCCeeeeccCccc----------c-eEEEEEcCCCCe----EEEEeCCCcEEEEEccCC
Q 020461 22 GDLLFSCAK-DHTPTVWFA-DNGERLGTYRGHNG----------A-VWCCDVSRDSMT----LITGSADQTAKLWNVETG 84 (326)
Q Consensus 22 ~~~l~s~~~-d~~v~iw~~-~~~~~~~~~~~h~~----------~-V~~~~~~~~~~~----l~s~~~d~~i~~wd~~~~ 84 (326)
+..++.++. ++.|.-+|. ++|+.+=.++.... . ...++++|.+.. ++.++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445666666 788888898 88877533322111 0 123455433334 788889999999999999
Q ss_pred cEEEEEecCCC-----cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC--------------
Q 020461 85 AQLFTFNFDSP-----ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-------------- 145 (326)
Q Consensus 85 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 145 (326)
+.+........ ..+.-...++.+++............+...+. .+++.+-.....
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~------~TG~~~W~~~~~~~~~~~~~~p~~~~ 215 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDV------KTGEQVWRAYATGPDKDLLLASDFNI 215 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEET------TTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEEC------CCCcEEEEEcCCCCcccccccccccc
Confidence 98877654321 11100112344333221100000111111110 011111111100
Q ss_pred -----------------------ccce-eEEEEecCCcEEEEeeCC----------------CcEEEEECCCCccccccc
Q 020461 146 -----------------------QGRI-NRAVWGPLNRTIISAGED----------------AIVRIWDTETGKLLKESD 185 (326)
Q Consensus 146 -----------------------~~~i-~~~~~~~~~~~l~s~~~d----------------~~i~~wd~~~~~~~~~~~ 185 (326)
...+ ...++.+....++.+..+ +.|..+|.++|+..-...
T Consensus 216 ~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence 0001 134566777777766554 379999999998754432
Q ss_pred cccCcc--------eeeEEEEEc-CCC---CeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 186 KETGHK--------KTITSLAKA-ADG---SHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 186 ~~~~h~--------~~v~~v~~s-~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
. ..|. .++. +... .+| ..++.++.+|.++..|.++++.+....
T Consensus 296 ~-~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 296 K-TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp S-STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred c-CCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 2 1221 1121 2222 467 567889999999999999999887664
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.18 E-value=0.0018 Score=53.17 Aligned_cols=74 Identities=14% Similarity=0.041 Sum_probs=49.8
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCC--cEEEEEccCCcE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQ 86 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~ 86 (326)
.....++|+++++++++-..++.|..|+... .....+. -.+....+++.++++++++..... .|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 4467899999999888877889999998764 3332222 234678899999998655543322 355556666554
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.15 E-value=0.0017 Score=58.43 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=45.7
Q ss_pred CCEEEeecCCCCeEEEecCCCCeeeecc--Cccc--ceEE-EEEcCCCCeEEEEeC------CCcEEEEEccCCcEEEEE
Q 020461 22 GDLLFSCAKDHTPTVWFADNGERLGTYR--GHNG--AVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~--~h~~--~V~~-~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~ 90 (326)
+..++.++.|+.+.-+|.++|+.+-... .+.. .+.+ .... ++ .++.++. ++.|..+|..+|+.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 4567777889999999999998764433 2211 1221 1111 34 4555544 799999999999998877
Q ss_pred ecC
Q 020461 91 NFD 93 (326)
Q Consensus 91 ~~~ 93 (326)
...
T Consensus 193 ~~~ 195 (571)
T 2ad6_A 193 FAT 195 (571)
T ss_dssp ESS
T ss_pred ccC
Confidence 643
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.10 E-value=0.00026 Score=65.03 Aligned_cols=195 Identities=12% Similarity=0.161 Sum_probs=110.3
Q ss_pred eEEEEccCCCEEEeecCCCC-------------------eEEEecCCCCeeeeccC--cc-------cceEEEEEcCCCC
Q 020461 14 TYLKYNKDGDLLFSCAKDHT-------------------PTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM 65 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~-------------------v~iw~~~~~~~~~~~~~--h~-------~~V~~~~~~~~~~ 65 (326)
..++++|++.+++.++.++. |.-+|.++|+.+=.++. |. .+.....+..+++
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 35788898888888877663 88889999987655543 32 2222223333564
Q ss_pred ---eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeee--cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE
Q 020461 66 ---TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA--VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 140 (326)
Q Consensus 66 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (326)
.++.++.+|.+.++|..+|+.+....+........+. .+..+. ...... .+....
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~--~~~~~~------------------~~~~~~ 372 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVE--APGVRY------------------EKEPIV 372 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEE--CTTTTC------------------SSSCEE
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccc--cccccc------------------cCCeeE
Confidence 6889999999999999999988665543211000000 000000 000000 000111
Q ss_pred EeccCccce--eEEEEecCCcEEE------------------------------------EeeCCCcEEEEECCCCcccc
Q 020461 141 ILKGPQGRI--NRAVWGPLNRTII------------------------------------SAGEDAIVRIWDTETGKLLK 182 (326)
Q Consensus 141 ~~~~~~~~i--~~~~~~~~~~~l~------------------------------------s~~~d~~i~~wd~~~~~~~~ 182 (326)
.+.+..+.. ..++++|+...++ ....+|.|..||+.+++..-
T Consensus 373 ~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W 452 (668)
T 1kv9_A 373 MWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW 452 (668)
T ss_dssp ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE
T ss_pred ECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE
Confidence 111110000 1123333333222 12245889999999998654
Q ss_pred ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec
Q 020461 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232 (326)
Q Consensus 183 ~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 232 (326)
.... ........+...+.+++.++.|+.++.||.++++.+..+...
T Consensus 453 ~~~~----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 453 KVPY----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EccC----CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 3321 122222333445778889999999999999999999888654
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.09 E-value=0.002 Score=53.39 Aligned_cols=163 Identities=12% Similarity=0.054 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCC
Q 020461 55 VWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134 (326)
Q Consensus 55 V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (326)
-.++++++++++++++..++.|..||..+++.. .+......... ...+
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~---------------------------~~~~---- 68 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNK---------------------------AFCE---- 68 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCH---------------------------HHHT----
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccc---------------------------cccc----
Confidence 456788888887888888899999987765432 11110000000 0000
Q ss_pred CCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc-ccC-cceeeEEEEEcC-CCCeEEEEeC
Q 020461 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-ETG-HKKTITSLAKAA-DGSHFLTGSL 211 (326)
Q Consensus 135 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~-h~~~v~~v~~s~-~~~~l~s~s~ 211 (326)
+............+..++++++...|+.+...+.|..+|..+++. ..+.. ..+ .......+++++ +|...++-..
T Consensus 69 -g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~ 146 (322)
T 2fp8_A 69 -NSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVS 146 (322)
T ss_dssp -TCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESC
T ss_pred -cccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCc
Confidence 000000000112355677887333444454445588888765532 11111 011 112367789999 8877666432
Q ss_pred -----------------CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEec
Q 020461 212 -----------------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 212 -----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 251 (326)
++.|..+|..+++...........+.++++++++.++++-
T Consensus 147 ~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d 203 (322)
T 2fp8_A 147 TLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 203 (322)
T ss_dssp SSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEE
T ss_pred ccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEe
Confidence 3678889987765433222234567899999988777653
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.02 E-value=0.0012 Score=60.57 Aligned_cols=74 Identities=4% Similarity=0.087 Sum_probs=50.5
Q ss_pred ceeEEEEccCCCEEEeec-CCCCeEEEecCCCCeeeeccCcccc-eEEEEEcCCCCeEEEEe-CC-----CcEEEEEccC
Q 020461 12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGA-VWCCDVSRDSMTLITGS-AD-----QTAKLWNVET 83 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~~-~d-----~~i~~wd~~~ 83 (326)
...++++.+++++++.|+ .+..+.+||..+.+....-.-+... -.++...++++.++.|| .+ ..+.+||+.+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 344577889999999888 4568999999887654332222221 12344556888888888 44 5689999987
Q ss_pred Cc
Q 020461 84 GA 85 (326)
Q Consensus 84 ~~ 85 (326)
++
T Consensus 324 ~~ 325 (656)
T 1k3i_A 324 KT 325 (656)
T ss_dssp TE
T ss_pred Cc
Confidence 65
No 258
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.01 E-value=0.01 Score=55.71 Aligned_cols=281 Identities=9% Similarity=0.046 Sum_probs=148.9
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-------cccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~ 82 (326)
...|.++...+++.+.+....+| +.+|+..+++....... ....|.++...+++.+. .|..+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCC
Confidence 35678888888888766554444 78888777654332211 13569999888777644 45555 58889987
Q ss_pred CCcEEEEEecC---------CCcceeeeecCCeEEEEEcC-ccceecee-eeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461 83 TGAQLFTFNFD---------SPARSVDFAVGDKLAVITTD-PFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINR 151 (326)
Q Consensus 83 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (326)
+++... +... ..+.++.....+.+.+.... .....+.. ..+.......... .-....|.+
T Consensus 291 ~~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~--------~l~~~~V~~ 361 (795)
T 4a2l_A 291 TDSFAS-YSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKN--------SLSDNVVSC 361 (795)
T ss_dssp TTEEEE-ECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSS--------SCSCSSEEE
T ss_pred CCeEEE-EecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCC--------CCCCCeeEE
Confidence 765432 2211 11223333333344433321 11111000 0000000000000 012345788
Q ss_pred EEEecCCcEEEEeeCCCcEEEEECCCCcccccccccc------CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (326)
Q Consensus 152 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (326)
+...+++. |..|..++-|..||..+++... +.... -....|.++..++++..|..|+.++-|..+|.++++.
T Consensus 362 i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 362 IVEDKDKN-LWIGTNDGGLNLYNPITQRFTS-YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp EEECTTSC-EEEEESSSCEEEECTTTCCEEE-ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred EEECCCCC-EEEEECCCCeEEEcCCCCcEEE-EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 88887766 4457777779999987654322 11110 1235688999888887577788878899999988664
Q ss_pred EEEEee------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461 226 IKTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (326)
Q Consensus 226 ~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d 299 (326)
. .+.. ...+.++...+++. +.++.. .+ +..+|...+.+... ..... .. .-....|.++...++
T Consensus 440 ~-~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~G--l~~~~~~~~~~~~~--~~~~~--~~--~~~~~~i~~i~~d~~ 508 (795)
T 4a2l_A 440 E-NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SA--LVRFNPEQRSFTTI--EKEKD--GT--PVVSKQITTLFRDSH 508 (795)
T ss_dssp E-EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SC--EEEEETTTTEEEEC--CBCTT--CC--BCCCCCEEEEEECTT
T ss_pred E-EeecCCCCcCCCeeEEEEECCCCC-EEEEec-Cc--eeEEeCCCCeEEEc--ccccc--cc--ccCCceEEEEEECCC
Confidence 3 2321 23567777776654 333333 22 33344433332211 10000 00 112357899999999
Q ss_pred CceEEeecCCCcEEEeec
Q 020461 300 GKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 300 ~~~lat~s~Dg~i~l~~~ 317 (326)
|.+.+... .| |..++.
T Consensus 509 g~lWigt~-~G-l~~~~~ 524 (795)
T 4a2l_A 509 KRLWIGGE-EG-LSVFKQ 524 (795)
T ss_dssp CCEEEEES-SC-EEEEEE
T ss_pred CCEEEEeC-Cc-eEEEeC
Confidence 98776554 44 444443
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.96 E-value=0.0053 Score=55.42 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=43.9
Q ss_pred EEeecCCCCeEEEecCCCCeeeeccCcc--c--ceEE-EEEcCCCCeEEEEe------CCCcEEEEEccCCcEEEEEecC
Q 020461 25 LFSCAKDHTPTVWFADNGERLGTYRGHN--G--AVWC-CDVSRDSMTLITGS------ADQTAKLWNVETGAQLFTFNFD 93 (326)
Q Consensus 25 l~s~~~d~~v~iw~~~~~~~~~~~~~h~--~--~V~~-~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~ 93 (326)
++.++.|+.+.-+|.++|+.+=...... . .+.+ ..+. ++ .++.++ .++.|..+|.++|+.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7778889999999999998764432211 0 1221 1111 34 444444 3899999999999998877654
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.95 E-value=0.0023 Score=59.61 Aligned_cols=97 Identities=10% Similarity=-0.044 Sum_probs=58.6
Q ss_pred ceeEEEEc-cCCCEEEeecC-C----CCeEEEecCCC-CeeeeccCcccceEEEEEcCCCCeEEEEeCC-----CcEEEE
Q 020461 12 PLTYLKYN-KDGDLLFSCAK-D----HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLW 79 (326)
Q Consensus 12 ~i~~~~~s-~~~~~l~s~~~-d----~~v~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~w 79 (326)
.+...+|| |||++||-+.. + ..|+++|+.++ +.+.. .-......++|+||++.|+-...| ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 56788999 99998774332 2 35999999988 63211 001123468899999877666654 256777
Q ss_pred EccCCc--EEEEEecC--CCcceeeeecCCeEEEE
Q 020461 80 NVETGA--QLFTFNFD--SPARSVDFAVGDKLAVI 110 (326)
Q Consensus 80 d~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~ 110 (326)
++.++. ....+... .-.....++++++.++.
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~ 287 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI 287 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE
Confidence 877653 22333322 12234567776655444
No 261
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.94 E-value=0.0047 Score=49.48 Aligned_cols=210 Identities=8% Similarity=-0.029 Sum_probs=107.3
Q ss_pred EEEeecCCCCeEEEecCCCCee-----eeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccCCcEEEEEecC-CCc
Q 020461 24 LLFSCAKDHTPTVWFADNGERL-----GTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNFD-SPA 96 (326)
Q Consensus 24 ~l~s~~~d~~v~iw~~~~~~~~-----~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~-~~~ 96 (326)
+|+.+.. +.|+.+++...... ..+.........++++++++.|+.+. ..+.|..+++.+.......... ...
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 3444433 36777777654321 11222233567899998766555444 5788999998766543332211 233
Q ss_pred ceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC---CCcEEE
Q 020461 97 RSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRI 172 (326)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---d~~i~~ 172 (326)
..+.+.+ ++.+.++.... ..+..... + .. ...............++++|++..|+.+.. .+.|..
T Consensus 82 ~~ia~d~~~~~lyv~d~~~-----~~I~~~~~--~---g~-~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQL-----DRIEVAKM--D---GT-QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp EEEEEETTTTEEEEEETTT-----TEEEEEET--T---SC-SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred cEEEEEecCCeEEEEECCC-----CEEEEEEc--C---CC-CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 4555655 34444433221 11111111 1 01 111112222245678999997665544433 468888
Q ss_pred EECCCCccccccccccCcceeeEEEEEcCCCCeEE-EEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEe
Q 020461 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 250 (326)
+++.. +....+.. ........+++++++..|. +-...+.|..+|+.................++. +++.++++
T Consensus 151 ~~~dg-~~~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva 224 (267)
T 1npe_A 151 SHMDG-TNRRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYT 224 (267)
T ss_dssp EETTS-CCCEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEE
T ss_pred EecCC-CCcEEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEE
Confidence 88753 22222211 1123467899999876665 445568899999976443222222223345543 34455544
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.93 E-value=0.011 Score=53.25 Aligned_cols=62 Identities=11% Similarity=0.002 Sum_probs=42.1
Q ss_pred CcEEEEECCCCccccccccccCcc--------eeeEEEEEc-CCCC---eEEEEeCCCeEEEeecCCcceEEEEee
Q 020461 168 AIVRIWDTETGKLLKESDKETGHK--------KTITSLAKA-ADGS---HFLTGSLDKSAKLWDARTLELIKTYVT 231 (326)
Q Consensus 168 ~~i~~wd~~~~~~~~~~~~~~~h~--------~~v~~v~~s-~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (326)
+.|..+|.++|+..-.... ..|. .++. +... .+|+ .++.++.+|.++.+|.++++.+..+..
T Consensus 291 ~~v~AlD~~TG~~~W~~q~-~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQH-TPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp SEEEEECTTTCCEEEEEES-STTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ceEEEEeCCCCCEEEEEeC-CCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 5799999999987644321 1121 1221 2221 4663 788899999999999999998877653
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.84 E-value=0.0014 Score=59.10 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=49.2
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEE--EEeCCC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPL 243 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~s~~ 243 (326)
.+|.|..||+.+++.+-..... ..+..-.....+.+++.|+.|+.++.+|.++++.+-++.....+.+ +.+..+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~ 539 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD 539 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CcceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC
Confidence 3688999999998765433211 1121111122356788899999999999999999998875433222 344445
Q ss_pred CCe
Q 020461 244 LDH 246 (326)
Q Consensus 244 ~~~ 246 (326)
+..
T Consensus 540 G~q 542 (582)
T 1flg_A 540 GEQ 542 (582)
T ss_dssp TEE
T ss_pred CEE
Confidence 543
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.82 E-value=0.00063 Score=63.43 Aligned_cols=99 Identities=7% Similarity=-0.012 Sum_probs=65.8
Q ss_pred ceeEEEEe-cCCcEEEEeeC-C----CcEEEEECCCC-ccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----CeE
Q 020461 148 RINRAVWG-PLNRTIISAGE-D----AIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSA 215 (326)
Q Consensus 148 ~i~~~~~~-~~~~~l~s~~~-d----~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-----g~i 215 (326)
.+....|| |+|+.|+.+.. + ..|+++|+.++ +.+... -......+.|+|||+.|+....| ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-----~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-----VSGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-----EEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-----ccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 56788999 99998875432 2 25999999988 632211 01224578999999988877765 358
Q ss_pred EEeecCCcceE--EEEe--eccceEEEEeCCCCCeeEEec
Q 020461 216 KLWDARTLELI--KTYV--TERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 216 ~iwd~~~~~~~--~~~~--~~~~~~~~~~s~~~~~~~~~~ 251 (326)
+.+++.+++.. ..+. .......+.++|+++.+++..
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 88888876422 1121 122345678999999887654
No 265
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.77 E-value=0.0041 Score=51.10 Aligned_cols=179 Identities=7% Similarity=0.099 Sum_probs=104.0
Q ss_pred eeeeecCCceeEEEEccCCCEEEeec-CCCCeEEEecCCCCeee-eccC----cc--cceEEEEE---cCCCCeEEEEe-
Q 020461 4 ILMKGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLG-TYRG----HN--GAVWCCDV---SRDSMTLITGS- 71 (326)
Q Consensus 4 ~~~~~h~~~i~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~-~~~~----h~--~~V~~~~~---~~~~~~l~s~~- 71 (326)
+.+....-...+++|++...++..++ ..++|..|+...+.... .+.+ .. ..+..|.+ .|+++++++..
T Consensus 6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 55666666678999998666555555 78999999987664322 3332 11 14578999 67877666433
Q ss_pred ------------CCCcEEEEEcc---CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCC
Q 020461 72 ------------ADQTAKLWNVE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136 (326)
Q Consensus 72 ------------~d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (326)
.+..+..+|+. +++.+.......... . +...
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~-----------------------~--~~~~--------- 131 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQD-----------------------E--FEKK--------- 131 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHH-----------------------H--HHHH---------
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccc-----------------------c--cccc---------
Confidence 15567777776 554433221100000 0 0000
Q ss_pred ceEEEecc-CccceeEEEEecCCcEEEEeeCC-CcEEEEECCCCccccccc---cccCcceeeEEEEEcCCCCeEEEEeC
Q 020461 137 ESVLILKG-PQGRINRAVWGPLNRTIISAGED-AIVRIWDTETGKLLKESD---KETGHKKTITSLAKAADGSHFLTGSL 211 (326)
Q Consensus 137 ~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~---~~~~h~~~v~~v~~s~~~~~l~s~s~ 211 (326)
.+ .....+.++..++|+..++++.- +.|...+... +...... .........+.+++.|+|..|++...
T Consensus 132 ------~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~ 204 (334)
T 2p9w_A 132 ------AGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG 204 (334)
T ss_dssp ------HSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred ------ccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence 00 01235567777777777777666 6666665542 2221110 01112233678899999999888877
Q ss_pred CCeEEEeecCCc
Q 020461 212 DKSAKLWDARTL 223 (326)
Q Consensus 212 dg~i~iwd~~~~ 223 (326)
.|.|.-+|+++.
T Consensus 205 ~g~L~~fD~~~p 216 (334)
T 2p9w_A 205 PRALTAFDVSKP 216 (334)
T ss_dssp SSSEEEEECSSS
T ss_pred CCeEEEEcCCCC
Confidence 999999998853
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.70 E-value=0.02 Score=49.51 Aligned_cols=160 Identities=12% Similarity=0.062 Sum_probs=87.3
Q ss_pred CceeEEEEccC---CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 11 RPLTYLKYNKD---GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 11 ~~i~~~~~s~~---~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
.....++++|+ +.++++ ...+.|+.++..++...... ........++++++++ |+.+...+. .....+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~------~~~~gv 209 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSS------DTNTGI 209 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSC------TTSEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCC------cccceE
Confidence 34578999995 554444 33389999998777654433 3344578899999998 554443220 000001
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEeeC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGE 166 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~ 166 (326)
..+..... +. ...... .......++++| ++.++++-..
T Consensus 210 ~~~~~~~~-------------------~~------------------~~~~~~----~~~~P~giavd~~~G~lyv~d~~ 248 (433)
T 4hw6_A 210 YLFTRASG-------------------FT------------------ERLSLC----NARGAKTCAVHPQNGKIYYTRYH 248 (433)
T ss_dssp EEECGGGT-------------------TC------------------CEEEEE----ECSSBCCCEECTTTCCEEECBTT
T ss_pred EEEECCCC-------------------ee------------------cccccc----ccCCCCEEEEeCCCCeEEEEECC
Confidence 00000000 00 000000 012234467788 5555556666
Q ss_pred CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecC
Q 020461 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDAR 221 (326)
Q Consensus 167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~ 221 (326)
++.|+.+|..+++....+... +.......++++|++.+| ++-...+.|+.++..
T Consensus 249 ~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 249 HAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 788999998766542222111 111223469999999854 455567889997754
No 267
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.62 E-value=0.045 Score=51.33 Aligned_cols=266 Identities=8% Similarity=0.034 Sum_probs=143.9
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-------cccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..|.++..+++|.+.+.. .+ -+.+|+..++........ ....|.++...++|. |..|..++-|..|+..+
T Consensus 263 ~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIR 339 (795)
T ss_dssp SBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGG
T ss_pred CeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCc
Confidence 458899999999876654 34 578888777654432211 235699998887775 56677777788998776
Q ss_pred CcEEEEEecC--------CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec---------cCc
Q 020461 84 GAQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK---------GPQ 146 (326)
Q Consensus 84 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 146 (326)
+.... +... ..+.++.....+.+.+.....-+ ...... .+ ....+. -..
T Consensus 340 ~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl------~~~~~~------~~-~~~~~~~~~~~~~~~l~~ 405 (795)
T 4a2l_A 340 NRFKN-IRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGL------NLYNPI------TQ-RFTSYTLQEDESARGIGS 405 (795)
T ss_dssp GSSEE-ECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCE------EEECTT------TC-CEEEECCC------CCSC
T ss_pred ccceE-EcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCe------EEEcCC------CC-cEEEEecCCCCcccCCCC
Confidence 54322 2111 11222222223333333222111 100000 00 111110 123
Q ss_pred cceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc--ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
..|.++...+++..|..|..++-|..||..+++... +.. .......|.++..+++|...+ |+.+ .|..||.++++
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~ 482 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRS 482 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTE
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCe
Confidence 568888888888756667777779999988765422 111 002345688999888887544 4444 58889988765
Q ss_pred eEEEEee-------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC
Q 020461 225 LIKTYVT-------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297 (326)
Q Consensus 225 ~~~~~~~-------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 297 (326)
...-... ...+.++...+++..- ++.. .+ +..+|...+.+ .+ .... ... ......|.++...
T Consensus 483 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~-~G--l~~~~~~~~~~--~~-~~~~--~~~--~l~~~~i~~i~~d 551 (795)
T 4a2l_A 483 FTTIEKEKDGTPVVSKQITTLFRDSHKRLW-IGGE-EG--LSVFKQEGLDI--QK-ASIL--PVS--NVTKLFTNCIYEA 551 (795)
T ss_dssp EEECCBCTTCCBCCCCCEEEEEECTTCCEE-EEES-SC--EEEEEEETTEE--EE-CCCS--CSC--GGGGSCEEEEEEC
T ss_pred EEEccccccccccCCceEEEEEECCCCCEE-EEeC-Cc--eEEEeCCCCeE--EE-ecCC--CCC--CCCCCeeEEEEEC
Confidence 4322111 1346777777766543 3332 32 23333333222 11 1000 000 1134578999999
Q ss_pred CCCceEEeec
Q 020461 298 PDGKSFSSGG 307 (326)
Q Consensus 298 ~d~~~lat~s 307 (326)
++|.+.++..
T Consensus 552 ~~g~lWigT~ 561 (795)
T 4a2l_A 552 SNGIIWVGTR 561 (795)
T ss_dssp TTSCEEEEES
T ss_pred CCCCEEEEeC
Confidence 9998766444
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.57 E-value=0.019 Score=45.59 Aligned_cols=197 Identities=10% Similarity=0.104 Sum_probs=114.8
Q ss_pred ecCCceeEEEEccCCCEEEe-ecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461 8 GHERPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 8 ~h~~~i~~~~~s~~~~~l~s-~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 85 (326)
|=.+.+..++|+|+++.|++ ...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 44467899999998776655 6667788888887 777766532 12457788888888766665466677777765433
Q ss_pred EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (326)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 165 (326)
.+.... .... .+.. ...+.....++|+|.++.|+++.
T Consensus 103 ~i~~~~-----------------------------~~~~-~~~~-------------~~~N~g~EGLA~d~~~~~L~va~ 139 (255)
T 3qqz_A 103 EVKILK-----------------------------KIKI-PLQE-------------SPTNCGFEGLAYSRQDHTFWFFK 139 (255)
T ss_dssp CEEEEE-----------------------------EEEC-CCSS-------------CCCSSCCEEEEEETTTTEEEEEE
T ss_pred eeeeee-----------------------------eecc-cccc-------------ccccCCcceEEEeCCCCEEEEEE
Confidence 211000 0000 0000 01123355688899887776666
Q ss_pred CCCcEEEEECCC---Ccccccccc----ccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCcceEEEEeec-----
Q 020461 166 EDAIVRIWDTET---GKLLKESDK----ETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYVTE----- 232 (326)
Q Consensus 166 ~d~~i~~wd~~~---~~~~~~~~~----~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~----- 232 (326)
+.....+|.... ...+..... ...+...+.+++++|... +++....+..|..+|.+ ++.+..+...
T Consensus 140 E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~ 218 (255)
T 3qqz_A 140 EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRG 218 (255)
T ss_dssp ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGG
T ss_pred CcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCC
Confidence 655555555431 111110000 011233567888888644 45556667788899976 4555555422
Q ss_pred -----cceEEEEeCCCCCeeEE
Q 020461 233 -----RPVNAVTMSPLLDHVVL 249 (326)
Q Consensus 233 -----~~~~~~~~s~~~~~~~~ 249 (326)
.....++|.++++..++
T Consensus 219 l~~~~~qpEGia~d~~G~lyIv 240 (255)
T 3qqz_A 219 LSHNIKQAEGVAMDASGNIYIV 240 (255)
T ss_dssp CSSCCCSEEEEEECTTCCEEEE
T ss_pred cccccCCCCeeEECCCCCEEEE
Confidence 26789999999874444
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.55 E-value=0.024 Score=46.42 Aligned_cols=195 Identities=12% Similarity=0.053 Sum_probs=103.4
Q ss_pred CceeEEEEccCCCEEEeecCCCC--eEEEecCCCCeeeecc-CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHT--PTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~--v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 87 (326)
..+..++++++|+++++...... |..++..+++...... .....-..++..+++..+++-..++.|..+|..+++..
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 35678999999997776544333 5556666776532221 11122344444444444444445677766666543211
Q ss_pred EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-EEeeC
Q 020461 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGE 166 (326)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~ 166 (326)
..... +.. ..... .+.....+.+ +|+++.| ++-..
T Consensus 152 v~~~~---------------------~~~-----------~~~~~----------~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 152 IWLEH---------------------PML-----------ARSNS----------ESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEEEC---------------------GGG-----------SCSST----------TCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEEEC---------------------Ccc-----------ccccc----------cCCCCcCCCc--CcCCCEEEEEeCC
Confidence 00000 000 00000 0000111223 6677655 45556
Q ss_pred CCcEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE--EEeec-cceEEEEeC-
Q 020461 167 DAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVTE-RPVNAVTMS- 241 (326)
Q Consensus 167 d~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~-~~~~~~~~s- 241 (326)
.++|..+|+.. ++. ...... ........++++++|.+.++....+.|..+|.. ++... .+... ..+.++++.
T Consensus 188 ~~~I~~~~~~~~g~~-~~~~~~-~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKP-GEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp TTEEEEEEBCTTSCB-CCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred CCEEEEEEeCCCCCC-CccEEE-eccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEec
Confidence 78899999864 322 111000 001235678899999887777778899999986 54422 22222 457889998
Q ss_pred --CCCCeeEEecC
Q 020461 242 --PLLDHVVLGGG 252 (326)
Q Consensus 242 --~~~~~~~~~~~ 252 (326)
|+++.++++..
T Consensus 265 ~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 265 TEGDCTAIYVVTN 277 (306)
T ss_dssp STTTTTEEEEEEC
T ss_pred ccCCCCEEEEECC
Confidence 78777776543
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=0.057 Score=50.55 Aligned_cols=278 Identities=8% Similarity=0.069 Sum_probs=137.0
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-------cccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 83 (326)
..|.++...+++.+.+... + -+.+|+..+++....... ....|.++...+++. +..|...+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwigt~-~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTS-K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEEET-T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEEeC-C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 4588888888888776554 4 578888776654322111 234688888877765 55566645678889876
Q ss_pred CcEEEEEe-------c--------CCCcceeeeecCCeEEEEEcC-ccceeceee-eeeeeccCCCCCCCceEEEeccCc
Q 020461 84 GAQLFTFN-------F--------DSPARSVDFAVGDKLAVITTD-PFMELNSAI-HVKRIARDPADQGGESVLILKGPQ 146 (326)
Q Consensus 84 ~~~~~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 146 (326)
++...... . ...+.++.....+.+.+.... ......... .+......+.... .-.-..
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~-----~~~l~~ 362 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMN-----ESSLSN 362 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCC-----SSCCSS
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccc-----cCCCCC
Confidence 64322111 0 011222222222333332211 111110000 0000000000000 000123
Q ss_pred cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (326)
..|.++...+++. |..|..++-|..||..+++...-..........|.++..++++. |..|+.++-|..+|.++++..
T Consensus 363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE
T ss_pred cceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE
Confidence 4577888777765 44566566688999865432211110112335688998888875 555777777999998876543
Q ss_pred EEEee----ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce
Q 020461 227 KTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 302 (326)
Q Consensus 227 ~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~ 302 (326)
.+.. ...+.++...+++. +.++.. .+ +..+|...+.+.... ... ........|.++...++|.+
T Consensus 441 -~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~G--l~~~~~~~~~~~~~~-~~~------~~~~~~~~i~~i~~d~~g~l 508 (781)
T 3v9f_A 441 -IIELEKNELLDVRVFYEDKNKK-IWIGTH-AG--VFVIDLASKKVIHHY-DTS------NSQLLENFVRSIAQDSEGRF 508 (781)
T ss_dssp -ECCSTTTCCCCEEEEEECTTSE-EEEEET-TE--EEEEESSSSSCCEEE-CTT------TSSCSCSCEEEEEECTTCCE
T ss_pred -EeccCCCCCCeEEEEEECCCCC-EEEEEC-Cc--eEEEeCCCCeEEecc-cCc------ccccccceeEEEEEcCCCCE
Confidence 2221 23567777776654 444433 22 333443333221110 000 00011357899999998887
Q ss_pred EEeecCCC
Q 020461 303 FSSGGEDG 310 (326)
Q Consensus 303 lat~s~Dg 310 (326)
.+....+|
T Consensus 509 Wigt~~~G 516 (781)
T 3v9f_A 509 WIGTFGGG 516 (781)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 76544355
No 271
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.50 E-value=0.028 Score=46.19 Aligned_cols=162 Identities=10% Similarity=0.058 Sum_probs=95.0
Q ss_pred ceeEEEEecCCcEEEEee-CCCcEEEEECCCCccccccccc-c--C-cceeeEEEEE---cCCCCeEEEEeC--------
Q 020461 148 RINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKE-T--G-HKKTITSLAK---AADGSHFLTGSL-------- 211 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~-~--~-h~~~v~~v~~---s~~~~~l~s~s~-------- 211 (326)
...++.|++....|+.++ ..++|..||...+......... . + ....+..+.+ .+++.++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 344578988666666555 6999999998755332221111 0 1 1224578899 688777775432
Q ss_pred -----CCeEEEeecC---CcceEEEEeec--------------cceEEEEeCCCCCeeEEecCC-CcceeEeecccCcee
Q 020461 212 -----DKSAKLWDAR---TLELIKTYVTE--------------RPVNAVTMSPLLDHVVLGGGQ-DASAVTTTDHRAGKF 268 (326)
Q Consensus 212 -----dg~i~iwd~~---~~~~~~~~~~~--------------~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~d~~~~~~ 268 (326)
+..|..+|+. +++.+...... ...+.++..++|+..++.... ........|.. .
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~--~- 170 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK--T- 170 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC--C-
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC--E-
Confidence 6779999999 77776655311 147789999998876654332 22222222222 1
Q ss_pred eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461 269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318 (326)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~ 318 (326)
...|..... ........+.|+++|||..|+.....|.|.-|++.
T Consensus 171 -~~~~~~~~~-----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 -VSTFAWESG-----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp -EEEEEECCC-----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred -EeeeeecCC-----CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 111211110 01111235789999999887777668887766643
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.41 E-value=0.011 Score=51.21 Aligned_cols=155 Identities=10% Similarity=0.131 Sum_probs=85.7
Q ss_pred ceeEEEEec-CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CC----eEEEeecC
Q 020461 148 RINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK----SAKLWDAR 221 (326)
Q Consensus 148 ~i~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg----~i~iwd~~ 221 (326)
....++++| ++..|+.+...+.|+.+|+..++... +.. .......+++++++.+|+.+.. ++ .+...+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-Eec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 456788998 45566665555889999987654332 221 2345789999999995555554 22 2333443
Q ss_pred CcceE--EEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461 222 TLELI--KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (326)
Q Consensus 222 ~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d 299 (326)
.+... ..+........++++|....++++-.... .+..++...+... .+..... ...-+.++|+|+
T Consensus 213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~-~V~~~~~~~~~~~----------~~~~~~~-~~~P~gia~~pd 280 (430)
T 3tc9_A 213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAG-QVFRYDFTTQETT----------PLFTIQD-SGWEFHIQFHPS 280 (430)
T ss_dssp GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTT-EEEEEETTTTEEE----------EEEECSS-SSCCEEEEECTT
T ss_pred CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCC-EEEEEECCCCcEE----------EEEEcCC-CCcceeEEEcCC
Confidence 33222 22333345677888885444554422111 1222222111110 1111111 134578999999
Q ss_pred Cc-eEEeecCCCcEEEeecCC
Q 020461 300 GK-SFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 300 ~~-~lat~s~Dg~i~l~~~~~ 319 (326)
|+ ++++-...+.|..++++.
T Consensus 281 G~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 281 GNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSEEEEEETTTTEEEEEEEET
T ss_pred CCEEEEEECCCCEEEEEeCCc
Confidence 99 456666788888887764
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=0.053 Score=46.81 Aligned_cols=156 Identities=9% Similarity=0.005 Sum_probs=89.7
Q ss_pred ceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC-Cc---EEEEEccCCcE
Q 020461 12 PLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-QT---AKLWNVETGAQ 86 (326)
Q Consensus 12 ~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-~~---i~~wd~~~~~~ 86 (326)
....++++| ++..|+.+...+.|+.++.+++...... ........++|+++++.|+.+... +. ..+|....+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 3444555544478888898766543333 334457789999999966666542 21 11111111100
Q ss_pred EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEee
Q 020461 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAG 165 (326)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~ 165 (326)
. .. ..+.. ......++++| ++.++++-.
T Consensus 217 ~-----------------------------~~------------------~~l~~----~~~p~giavdp~~g~lyv~d~ 245 (430)
T 3tc9_A 217 K-----------------------------VI------------------TELTK----GQNCNGAETHPINGELYFNSW 245 (430)
T ss_dssp C-----------------------------SE------------------EEEEE----CSSCCCEEECTTTCCEEEEET
T ss_pred e-----------------------------ee------------------eeecc----CCCceEEEEeCCCCEEEEEEC
Confidence 0 00 00000 11234567888 566666666
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe-EEEEeCCCeEEEeecC
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDAR 221 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s~dg~i~iwd~~ 221 (326)
.++.|..+|...+.... +.. .+.......++++|+|++ .++-...+.|..++..
T Consensus 246 ~~~~V~~~~~~~~~~~~-~~~-~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 246 NAGQVFRYDFTTQETTP-LFT-IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTTEEEEEETTTTEEEE-EEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCcEEE-EEE-cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 78899999987654311 111 111234678999999995 4555567889988765
No 274
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.38 E-value=0.044 Score=45.38 Aligned_cols=272 Identities=10% Similarity=0.071 Sum_probs=130.6
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeee--c--cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--Y--RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~--~--~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 86 (326)
..+.++.|.+++..+++ +.++.|. .....|+.-.. . ......+..+.|.+ ++ ++.++.++.|.. ..+.++.
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSS
T ss_pred CcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCC
Confidence 46789999877777774 4566542 22233332111 1 12344688898876 43 444566664432 3333444
Q ss_pred EEEEecC----CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461 87 LFTFNFD----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (326)
Q Consensus 87 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (326)
....... .....+.....+.+.++.....+ .+. .+.+..-..........+..+.+.|++.+++
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v--------~~S----~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ 178 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAI--------YRT----KDSGKNWQALVQEAIGVMRNLNRSPSGEYVA 178 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETTEEEEEETTCCE--------EEE----SSTTSSEEEEECSCCCCEEEEEECTTSCEEE
T ss_pred ceECccccCCCCCeEEEEEECCCCEEEEeCCccE--------EEE----cCCCCCCEEeecCCCcceEEEEEcCCCcEEE
Confidence 3332211 11222333333444433322111 000 0111112222234455678888999888777
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-----cceEE
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-----RPVNA 237 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~ 237 (326)
.+...+..+-+|- .++....+. .+....+..+.+++++.. +.++.+|.++..+...++.-.....+ ..+..
T Consensus 179 ~g~~G~~~~S~d~-gG~tW~~~~--~~~~~~~~~~~~~~~g~~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~ 254 (327)
T 2xbg_A 179 VSSRGSFYSTWEP-GQTAWEPHN--RTTSRRLHNMGFTPDGRL-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD 254 (327)
T ss_dssp EETTSSEEEEECT-TCSSCEEEE--CCSSSCEEEEEECTTSCE-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred EECCCcEEEEeCC-CCCceeECC--CCCCCccceeEECCCCCE-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEE
Confidence 6654444444442 122222221 123456788888888864 45566788877643323332222211 23667
Q ss_pred EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317 (326)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~ 317 (326)
+.+.+.+..++ ++. ++....+.|.-. -|.. +.....+...+.+++|.+++.. +.++.+|.|. ++
T Consensus 255 v~~~~~~~~~~-~g~-~g~i~~S~DgG~------tW~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~G~~G~i~--~~ 318 (327)
T 2xbg_A 255 LAYRTPNEVWL-AGG-AGALLCSQDGGQ------TWQQ-----DVDVKKVPSNFYKILFFSPDQG-FILGQKGILL--RY 318 (327)
T ss_dssp EEESSSSCEEE-EES-TTCEEEESSTTS------SCEE-----CGGGTTSSSCCCEEEEEETTEE-EEECSTTEEE--EE
T ss_pred EEecCCCEEEE-EeC-CCeEEEeCCCCc------ccEE-----cCccCCCCCCeEEEEEECCCce-EEEcCCceEE--EE
Confidence 77877554433 333 333333444221 1111 1101112346788988765654 4556688554 44
Q ss_pred CC
Q 020461 318 DP 319 (326)
Q Consensus 318 ~~ 319 (326)
++
T Consensus 319 ~~ 320 (327)
T 2xbg_A 319 VT 320 (327)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 275
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.035 Score=48.60 Aligned_cols=167 Identities=15% Similarity=0.145 Sum_probs=90.5
Q ss_pred ceeEEEEecC-Cc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE-------cCCCCeEEEEeCCC-----
Q 020461 148 RINRAVWGPL-NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK-------AADGSHFLTGSLDK----- 213 (326)
Q Consensus 148 ~i~~~~~~~~-~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~-------s~~~~~l~s~s~dg----- 213 (326)
....++++|. .. ++++-...+.|++.|++++..................+++ ++++..|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4567889984 44 4444444577999998876554322211112235788999 99998666665543
Q ss_pred --eEEEeecCC-cceE-----EEEeeccceEEEEeCCCCCeeEEecCCCcceeEeeccc-------CceeeeEeecccc-
Q 020461 214 --SAKLWDART-LELI-----KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR-------AGKFEAKFFDKIL- 277 (326)
Q Consensus 214 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~-------~~~~~~~~~~~~~- 277 (326)
.|.+.+... ++.. +.+........++++|....++++-.... .+..+|.. .+.. |....
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g-~V~r~d~~~~~~~~~tg~~----~tp~~~ 294 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKG-QVFRLDLVDYFKTIKNGGS----WDPIVK 294 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTT-EEEEECHHHHHHHHHTTCC----CCCBGG
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCC-EEEEEecccccccccCcee----eccccc
Confidence 266666444 2221 22222234567888887667666543332 23333322 1111 00000
Q ss_pred -----eeeeccccccCcceeEEEECCCCce-EEeecCCCcEEEeecCCC
Q 020461 278 -----QEEIGGVKGHFGPINALAFNPDGKS-FSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 278 -----~~~~~~~~~h~~~v~~v~~s~d~~~-lat~s~Dg~i~l~~~~~~ 320 (326)
.+.+... +....-..|+|+|+|+. .++-+..+.|+.++++..
T Consensus 295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~ 342 (496)
T 3kya_A 295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342 (496)
T ss_dssp GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence 0011111 11234578999999994 555566788888776653
No 276
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.16 Score=47.51 Aligned_cols=276 Identities=12% Similarity=0.035 Sum_probs=142.4
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc--------------CcccceEEEEEcCCCCeEEEEeCCCcE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--------------GHNGAVWCCDVSRDSMTLITGSADQTA 76 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--------------~h~~~V~~~~~~~~~~~l~s~~~d~~i 76 (326)
..|.++...++|.+.+. ...+-+.+++..++....... -....|.++...+++. |..|..++-|
T Consensus 258 ~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl 335 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIA-TELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGI 335 (781)
T ss_dssp CCEEEEEECTTSEEEEE-ESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCE
T ss_pred ceEEEEEECCCCCEEEE-eCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeE
Confidence 45888888888886654 443456778877654322111 1245688888877765 6667777778
Q ss_pred EEEEccCCcEEEEEecC-----------CCcceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461 77 KLWNVETGAQLFTFNFD-----------SPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (326)
Q Consensus 77 ~~wd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (326)
..++..+..... +... ..+.++.....+.+.+... ......+.... ....... ....
T Consensus 336 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~--~~~~~~~--------~~~~ 404 (781)
T 3v9f_A 336 NFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKR--VAIYNKE--------NREL 404 (781)
T ss_dssp EEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEE--EEECC-------------C
T ss_pred EEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCC--eEEEccC--------CCCC
Confidence 888887654322 1110 1122222223333433331 11111110000 0000000 0012
Q ss_pred CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (326)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (326)
....|.++...+++.+.+ |..++.|..+|..+++... +.........|.++..++++. |..|+. +-|..+|.++++
T Consensus 405 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 405 LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKK 480 (781)
T ss_dssp CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSS
T ss_pred CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCe
Confidence 345688888777776444 6666678899987665322 211011245688998888876 444555 568889988765
Q ss_pred eEEEEee------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461 225 LIKTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (326)
Q Consensus 225 ~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~ 298 (326)
....... ...+.++...+++.. .++....+ +..+|...+.+. .+... ..+ ....|.++...+
T Consensus 481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~G--l~~~~~~~~~~~--~~~~~-----~~l--~~~~i~~i~~d~ 548 (781)
T 3v9f_A 481 VIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGG--VGIYTPDMQLVR--KFNQY-----EGF--CSNTINQIYRSS 548 (781)
T ss_dssp CCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSC--EEEECTTCCEEE--EECTT-----TTC--SCSCEEEEEECT
T ss_pred EEecccCcccccccceeEEEEEcCCCCE-EEEEcCCC--EEEEeCCCCeEE--EccCC-----CCC--CCCeeEEEEECC
Confidence 4332211 235777777776654 33322122 333443333221 11110 011 235689999999
Q ss_pred CCceEEeecCCCcEEEee
Q 020461 299 DGKSFSSGGEDGYVRLHH 316 (326)
Q Consensus 299 d~~~lat~s~Dg~i~l~~ 316 (326)
+|.+.++.. +|-|..|+
T Consensus 549 ~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 549 KGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp TSCEEEEET-TEEEEESC
T ss_pred CCCEEEEEC-CCceEEEC
Confidence 998776544 66534433
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.07 E-value=0.077 Score=42.09 Aligned_cols=213 Identities=13% Similarity=0.121 Sum_probs=110.5
Q ss_pred eccCcccceEEEEEcCCCCeEEE-EeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461 47 TYRGHNGAVWCCDVSRDSMTLIT-GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (326)
Q Consensus 47 ~~~~h~~~V~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
.+.+-...+..++++|+++.|++ ...++.|...|.+ ++.+..+.+...
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~------------------------------ 69 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV------------------------------ 69 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC------------------------------
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC------------------------------
Confidence 34455567999999998765554 6677777777876 665544432110
Q ss_pred eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccc---cccc---cccCcceeeEEEEE
Q 020461 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL---KESD---KETGHKKTITSLAK 199 (326)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~---~~~~h~~~v~~v~~ 199 (326)
...-.+++.+++.++++.-.++.+.++++.....+ .... ...........+++
T Consensus 70 ---------------------~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~ 128 (255)
T 3qqz_A 70 ---------------------KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAY 128 (255)
T ss_dssp ---------------------SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEE
T ss_pred ---------------------CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEE
Confidence 00111223333443333333444555554322211 1110 01123445789999
Q ss_pred cCCCCeEEEEeCCCeEEEeecCC---cceEEEEe--------eccceEEEEeCCCCCeeEEecCCCcceeEeecccCcee
Q 020461 200 AADGSHFLTGSLDKSAKLWDART---LELIKTYV--------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268 (326)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~--------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~ 268 (326)
+|++..|.++.......+|.++. ...+.... ......+++++|...++++....... +..+|.. +.
T Consensus 129 d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~-L~~~d~~-g~- 205 (255)
T 3qqz_A 129 SRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRA-LQEVTLV-GE- 205 (255)
T ss_dssp ETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTE-EEEECTT-CC-
T ss_pred eCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCe-EEEEcCC-CC-
Confidence 99998888888766656665531 11111111 11356899999988887776554443 3344433 22
Q ss_pred eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461 269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~ 319 (326)
.+..+....+ ...+..-...-..|+|.|+|.+.++ |+-. .+|.|.+
T Consensus 206 ~~~~~~L~~g--~~~l~~~~~qpEGia~d~~G~lyIv-sE~n--~~y~f~~ 251 (255)
T 3qqz_A 206 VIGEMSLTKG--SRGLSHNIKQAEGVAMDASGNIYIV-SEPN--RFYRFTP 251 (255)
T ss_dssp EEEEEECSTT--GGGCSSCCCSEEEEEECTTCCEEEE-ETTT--EEEEEEC
T ss_pred EEEEEEcCCc--cCCcccccCCCCeeEECCCCCEEEE-cCCc--eEEEEEe
Confidence 1222221110 0111111234578999999986665 5555 5555543
No 278
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.04 E-value=0.023 Score=52.45 Aligned_cols=207 Identities=12% Similarity=-0.053 Sum_probs=105.8
Q ss_pred ceeEEEEccCCCEEE-eecCCCCeEEEecCC----CCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCc
Q 020461 12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGA 85 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~-s~~~d~~v~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~ 85 (326)
.+..++|++.+..|+ +-...+.|+.+++.. ......+...-.....|++.+.+ +++++-...+.|.+.++....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 456789998665544 445678899988765 22222222212234567887544 444554567889999987654
Q ss_pred EEEEEecC-CCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-E
Q 020461 86 QLFTFNFD-SPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-I 162 (326)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~ 162 (326)
....+... .....+.+.+. ..+.+..... ...+ .++. .+... ............+.++++|++..| +
T Consensus 487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~----~~~I--~~~~---~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGT----PAKI--KKGG---LNGVD-IYSLVTENIQWPNGITLDLLSGRLYW 556 (699)
T ss_dssp EEEECCCSSCCCCCEECCSSSSCCEECCCSS----SCCE--EBCC---SSSCC-CCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred eEEEEeCCCCCcceEEEccCCCcEEEcccCC----CCeE--EEEe---CCCCC-eeEEEeCCCCCccEEEEeccCCEEEE
Confidence 43332211 22234444432 2222211110 0111 1111 01111 111112223345678999876544 4
Q ss_pred EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
+-...+.|..+|+... ....+............+++..+ ..+++....+.|..+|..+++.+..+.
T Consensus 557 aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 5556778999998642 22222211111122345566554 455566677889999988887766653
No 279
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.04 E-value=0.11 Score=43.19 Aligned_cols=190 Identities=14% Similarity=0.218 Sum_probs=106.8
Q ss_pred cCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC----CC---eEEEEe-C--CCcEEEEEcc--CCcEE
Q 020461 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD----SM---TLITGS-A--DQTAKLWNVE--TGAQL 87 (326)
Q Consensus 20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~----~~---~l~s~~-~--d~~i~~wd~~--~~~~~ 87 (326)
|...++++....+-+.+||+ +|+.+..+.. +.++.+..-|+ ++ ++++.. . +.+|++|++. +++ +
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 34566777777889999999 8888887754 56677766552 22 223333 3 5789999763 332 2
Q ss_pred EEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE--ecC-Cc-EEE
Q 020461 88 FTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW--GPL-NR-TII 162 (326)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~l~ 162 (326)
..+... .++ .. ....+.-+++ +|. ++ +++
T Consensus 114 ~~i~~~~~pv--------------~t--------------------------------~~~~pyGlcly~~~~~g~~yaf 147 (355)
T 3amr_A 114 QSMTDPDHPI--------------AT--------------------------------AINEVYGFTLYHSQKTGKYYAM 147 (355)
T ss_dssp EECSCTTSCE--------------EC--------------------------------CCSSCCCEEEEECTTTCCEEEE
T ss_pred eeccccccCc--------------CC--------------------------------CCCCeeEEEEEecCCCCcEEEE
Confidence 111000 000 00 0011111222 443 33 566
Q ss_pred EeeCCCcEEEEECC-------CCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC-----CcceEEEEe
Q 020461 163 SAGEDAIVRIWDTE-------TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-----TLELIKTYV 230 (326)
Q Consensus 163 s~~~d~~i~~wd~~-------~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~ 230 (326)
....+|.+..|++. +.+.++++. -...+-.+..++....|..+-+|..|..++.+ +.+.+..+.
T Consensus 148 V~~k~G~~~q~~l~~~~~g~~~~~lVR~f~----lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~ 223 (355)
T 3amr_A 148 VTGKEGEFEQYELKADKNGYISGKKVRAFK----MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD 223 (355)
T ss_dssp EECSSSEEEEEEEEECTTSCEEEEEEEEEE----CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS
T ss_pred EECCCCeEEEEEEEeCCCCcccceEEEEec----CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec
Confidence 77778999998883 223344432 23457788888888899999999776666644 344554442
Q ss_pred ec---cceEEEEe--CCCCCeeEEecCCCcceeEeecc
Q 020461 231 TE---RPVNAVTM--SPLLDHVVLGGGQDASAVTTTDH 263 (326)
Q Consensus 231 ~~---~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~d~ 263 (326)
.. ..+..+++ .+++...++.+.++...+..+|.
T Consensus 224 ~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 224 GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 22 35777777 56565434444444334444554
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.88 E-value=0.17 Score=43.13 Aligned_cols=210 Identities=11% Similarity=-0.055 Sum_probs=113.7
Q ss_pred cCCceeEEEEccCCC-EEEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEcc
Q 020461 9 HERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVE 82 (326)
Q Consensus 9 h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~ 82 (326)
....+..++|++..+ ++.+-..++.|+.++.... .....+.........+++.+.++ +.++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 345678899998655 4455556778888887642 22222332334567888887444 44555567889888887
Q ss_pred CCcEEEEEec-CCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461 83 TGAQLFTFNF-DSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (326)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (326)
.......+.. ......+.+.+ +..+.+...... .. +.+... +. ..........-...+.+++++++..
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~----~~--I~~~~~---dG-~~~~~~~~~~l~~P~glavd~~~~~ 259 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP----AK--IKKGGL---NG-VDIYSLVTENIQWPNGITLDLLSGR 259 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS----CC--EEEEET---TS-CSCEEEECSSCSCEEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCC----CE--EEEEeC---CC-CccEEEEECCCCceEEEEEEeCCCE
Confidence 6554433321 12234455554 333433321110 11 111111 11 1112222333356778999988776
Q ss_pred EEEe-eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 161 IISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 161 l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
|+.+ ...+.|..+|+... ....+....+.......+++.. +..+++....+.|..+|..+++.+..+.
T Consensus 260 lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 260 LYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 6555 45678999998643 2222221111122345666643 3456666677889999988887766664
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.82 E-value=0.19 Score=42.64 Aligned_cols=206 Identities=9% Similarity=-0.057 Sum_probs=110.2
Q ss_pred CceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEE
Q 020461 11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 11 ~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~ 88 (326)
..+..++|++.++ ++++-...+.|..++...+.....+.........+++.+.+..| ++-...+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 3467899997655 45555567888888877665433333223345678888755544 555566778888876544333
Q ss_pred EEecC-CCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-Eee
Q 020461 89 TFNFD-SPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAG 165 (326)
Q Consensus 89 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~ 165 (326)
..... .....+.+.+. ..+.+..... . -.+.+...+ .. .............+.++++|++..|+ +-.
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~----~--~~I~r~~~d---G~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGN----T--PRIEASSMD---GS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSS----S--CEEEEEETT---SC-SCEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCC----C--CEEEEEeCC---CC-CcEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence 22211 22344555543 3333332211 0 111121111 11 11222223334567899998766555 445
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
..+.|..+|+.... ...+.. ........+++. .+..+++....+.|..+|..+++.+..+.
T Consensus 266 ~~~~I~~~d~dG~~-~~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 266 KHHVIERANLDGSH-RKAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTTEEEEECTTSCS-CEEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEeCCCCe-eEEEEE--CCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 57789999976432 222211 112234566663 44556666677888888866776655554
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.80 E-value=0.16 Score=41.68 Aligned_cols=207 Identities=12% Similarity=-0.035 Sum_probs=111.5
Q ss_pred CceeEEEEccCCC-EEEeecCCCCeEEEecCC----CCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCC
Q 020461 11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG 84 (326)
Q Consensus 11 ~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~ 84 (326)
..+..++|++.++ ++++-..++.|..++... ......+...-.....+++.+.+..| ++-...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4467899998655 555556678888888765 22222222222345778888655544 45456788999998765
Q ss_pred cEEEEEec-CCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEEEEecCCcEE
Q 020461 85 AQLFTFNF-DSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l 161 (326)
........ ......+.+.+ +..+.+..... ... +.+...+ +..... ....-...+.++++|+++.|
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~----~~~--I~~~~~d-----G~~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----PAK--IKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSS----SCE--EEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCC----CCe--EEEEcCC-----CCCeEEEEECCCCCceEEEEeccCCEE
Confidence 44333321 12334555554 33444332211 011 1111111 112222 22233456789999887666
Q ss_pred EE-eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 162 IS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 162 ~s-~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
+. -...+.|..+|+.. ...+.+............+++. .+..+++....+.|..+|..+++.+..+.
T Consensus 179 Y~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 54 45567899999863 2222221111111234566665 35566666677889999987777655553
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.76 E-value=0.23 Score=42.85 Aligned_cols=202 Identities=11% Similarity=0.099 Sum_probs=96.5
Q ss_pred cCCceeEEEEccCCCEEEeecCC---CC-eEEEecCCCCee-eeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEcc
Q 020461 9 HERPLTYLKYNKDGDLLFSCAKD---HT-PTVWFADNGERL-GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE 82 (326)
Q Consensus 9 h~~~i~~~~~s~~~~~l~s~~~d---~~-v~iw~~~~~~~~-~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~ 82 (326)
.......++|+++|+++++...+ .. +...+...+... ..+. .-..-..++++| ++.+.++-..++.|+.+|..
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 34457899999999966654422 11 222222211110 1111 112235577888 56555555567889999988
Q ss_pred CCcEEE-EEecCC--CcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc--------------
Q 020461 83 TGAQLF-TFNFDS--PARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-------------- 144 (326)
Q Consensus 83 ~~~~~~-~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 144 (326)
+++... .+.... ....+.+.+... +.++..... . ++.+..+...........+.+
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~-----~--I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~ 331 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH-----C--IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTG 331 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT-----E--EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGG
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC-----E--EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccc
Confidence 776522 222211 122366666554 443332210 1 111111100000000000000
Q ss_pred -CccceeEEEE---------ecCCcEEEEeeCCCcEEEEECCCCccccccccc-----cC----------cceeeEEEEE
Q 020461 145 -PQGRINRAVW---------GPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TG----------HKKTITSLAK 199 (326)
Q Consensus 145 -~~~~i~~~~~---------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-----~~----------h~~~v~~v~~ 199 (326)
.-.....+++ .+.+.++++-...++|+.++. ++.. ..+... .+ .-.....+++
T Consensus 332 a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giav 409 (433)
T 4hw6_A 332 ARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAY 409 (433)
T ss_dssp SBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEE
T ss_pred eEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEE
Confidence 1123456777 566666666677788999885 4432 222111 00 1123567788
Q ss_pred c-CCCCeEEEEeCCCeEEEeec
Q 020461 200 A-ADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 200 s-~~~~~l~s~s~dg~i~iwd~ 220 (326)
+ ++|..+++-..++.|+..++
T Consensus 410 d~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 410 DMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp ETTTTEEEEEEGGGTEEEEEEE
T ss_pred ECCCCEEEEEeCCCCEEEEEec
Confidence 7 56666666556666776664
No 284
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.65 E-value=0.26 Score=41.83 Aligned_cols=179 Identities=4% Similarity=-0.149 Sum_probs=96.4
Q ss_pred eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE-eCCCcEEEEEccCCcEEEEEec
Q 020461 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVETGAQLFTFNF 92 (326)
Q Consensus 14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~ 92 (326)
.|.+..+++ +|+.+ ....|+..++........... ......++|++.++.|+.+ ...+.|..+++...........
T Consensus 80 ~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 80 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred eECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 444444533 33333 335677777766554433333 3346788998765555444 4566777777765432111100
Q ss_pred CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEE
Q 020461 93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVR 171 (326)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~ 171 (326)
.......+++++.+. ++++-...+.|.
T Consensus 157 ----------------------------------------------------~~~~p~glavd~~~g~lY~~d~~~~~I~ 184 (386)
T 3v65_B 157 ----------------------------------------------------GLESPGGLAVDWVHDKLYWTDSGTSRIE 184 (386)
T ss_dssp ----------------------------------------------------SCSCCCCEEEETTTTEEEEEETTTTEEE
T ss_pred ----------------------------------------------------CCCCccEEEEEeCCCeEEEEcCCCCeEE
Confidence 001122355565444 344555567788
Q ss_pred EEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe-CC-CeEEEeecCCcceEEEEee--ccceEEEEeCCCCCee
Q 020461 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LD-KSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHV 247 (326)
Q Consensus 172 ~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~~--~~~~~~~~~s~~~~~~ 247 (326)
+.++.... ...+. .........++++|.+..|..+. .. +.|...++..... ..+.. ....+.++++|....+
T Consensus 185 ~~~~dg~~-~~~l~--~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~l 260 (386)
T 3v65_B 185 VANLDGAH-RKVLL--WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRM 260 (386)
T ss_dssp ECBTTSCS-CEEEE--CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEE
T ss_pred EEeCCCCc-eEEee--cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEE
Confidence 88775332 22211 11224467889998665555443 44 6788888764332 22221 2357899999888877
Q ss_pred EEec
Q 020461 248 VLGG 251 (326)
Q Consensus 248 ~~~~ 251 (326)
+++-
T Consensus 261 Y~aD 264 (386)
T 3v65_B 261 YWVD 264 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.49 E-value=0.29 Score=40.59 Aligned_cols=147 Identities=10% Similarity=0.132 Sum_probs=83.9
Q ss_pred EEeeC--CCcEEEEEC--CCCccccccccc---cCcc-eeeEEEEE--cCC-CC-eEEEEeCCCeEEEeec-------CC
Q 020461 162 ISAGE--DAIVRIWDT--ETGKLLKESDKE---TGHK-KTITSLAK--AAD-GS-HFLTGSLDKSAKLWDA-------RT 222 (326)
Q Consensus 162 ~s~~~--d~~i~~wd~--~~~~~~~~~~~~---~~h~-~~v~~v~~--s~~-~~-~l~s~s~dg~i~iwd~-------~~ 222 (326)
++.-. +++|.+|++ .+++ +..+... .+-. ..+..+++ ++. +. +++....+|.+..|++ .+
T Consensus 91 as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~ 169 (355)
T 3amr_A 91 ASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS 169 (355)
T ss_dssp EEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred EeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence 34444 678999966 3433 3333110 0011 34556666 664 43 6888888999999988 34
Q ss_pred cceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-ccc-CcceeEEEE--CC
Q 020461 223 LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGH-FGPINALAF--NP 298 (326)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~v~~--s~ 298 (326)
.+.++++.....+..+...+....++++-- +. .++.++-....- .....+..+ .++ ...+..|++ .+
T Consensus 170 ~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eE-d~-GIw~~da~p~~~-------~~~~~v~~~~~g~l~aDvEGLai~~~~ 240 (355)
T 3amr_A 170 GKKVRAFKMNSQTEGMAADDEYGRLYIAEE-DE-AIWKFSAEPDGG-------SNGTVIDRADGRHLTRDIEGLTIYYAA 240 (355)
T ss_dssp EEEEEEEECSSCEEEEEEETTTTEEEEEET-TT-EEEEEECSTTSC-------SCCEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred ceEEEEecCCCCcceEEEcCCCCeEEEecc-cc-eEEEEeCCcCCC-------CCceEEEEecCCccccCcceEEEEecC
Confidence 577888887778888888888777777532 22 233333211000 001111111 122 236777887 55
Q ss_pred CCc-eEEeec-CCCcEEEeecC
Q 020461 299 DGK-SFSSGG-EDGYVRLHHFD 318 (326)
Q Consensus 299 d~~-~lat~s-~Dg~i~l~~~~ 318 (326)
+++ +|+++| .+.+..+|+.+
T Consensus 241 ~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 241 DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp GGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCEEEEEEcCCCCEEEEEECC
Confidence 655 554444 57788998875
No 286
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.45 E-value=0.32 Score=40.57 Aligned_cols=181 Identities=6% Similarity=-0.128 Sum_probs=97.1
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccCCcEEEEE
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTF 90 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~ 90 (326)
.-+|.+..+++.++++ ..+.|+..++........... ......++|++..+.|+-+. ..+.|..+++.........
T Consensus 35 ~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCcccccccCceeEee--cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 3455555554333333 334577777655544333333 23467888887655554443 5566777776543321110
Q ss_pred ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCc
Q 020461 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAI 169 (326)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~ 169 (326)
. ........+++++.+. .+++-...+.
T Consensus 112 ~----------------------------------------------------~~~~~p~glavd~~~g~ly~~d~~~~~ 139 (349)
T 3v64_C 112 S----------------------------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSR 139 (349)
T ss_dssp C----------------------------------------------------SSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred e----------------------------------------------------CCCCCccEEEEecCCCeEEEEcCCCCe
Confidence 0 0001123456665444 4455556778
Q ss_pred EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEE-EEeCC-CeEEEeecCCcceEEEEe--eccceEEEEeCCCCC
Q 020461 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLD-KSAKLWDARTLELIKTYV--TERPVNAVTMSPLLD 245 (326)
Q Consensus 170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~s~d-g~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~ 245 (326)
|.+.++.... ...+.. ........++++|.+..|. +-... +.|...++..... ..+. .....+.++++|...
T Consensus 140 I~~~~~dG~~-~~~l~~--~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~ 215 (349)
T 3v64_C 140 IEVANLDGAH-RKVLLW--QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGR 215 (349)
T ss_dssp EEEEETTSCS-CEEEEC--TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTT
T ss_pred EEEEcCCCCc-eEEEEe--CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCC
Confidence 8888876432 222111 1223467889998555444 44444 7788888764322 2221 123578999998888
Q ss_pred eeEEec
Q 020461 246 HVVLGG 251 (326)
Q Consensus 246 ~~~~~~ 251 (326)
.++.+-
T Consensus 216 ~lY~aD 221 (349)
T 3v64_C 216 RMYWVD 221 (349)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777764
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.35 E-value=0.68 Score=43.28 Aligned_cols=208 Identities=13% Similarity=-0.038 Sum_probs=110.5
Q ss_pred CCceeEEEEccCC-CEEEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccC
Q 020461 10 ERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVET 83 (326)
Q Consensus 10 ~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~ 83 (326)
...+..++|++.. .++++-...+.|+.+++... .....+...-.....|++.+.++.| ++-...+.|.+.+++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 4456789999854 45556666778888887642 2222333233456678888766555 4445678899999876
Q ss_pred CcEEEEEec-CCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461 84 GAQLFTFNF-DSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (326)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (326)
......+.. ......+.+.+. ..+.+...... ..+ ..... + +......+.......+.+++++.+..|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~----~~I--~~~~~---d-G~~~~~lv~~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP----AKI--KKGGL---N-GVDIYSLVTENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS----CEE--EEEET---T-SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCC----CeE--EEEec---C-CCceEEEEeCCCCCceEEEEecCCCeE
Confidence 554333321 122345555543 33433321110 111 11111 1 112222233334567889999877666
Q ss_pred EEe-eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461 162 ISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 162 ~s~-~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
+.+ .....|...++... ....+....+......+|++..+ ..+++-...+.|...|..+++.+..+
T Consensus 573 YwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 554 45668999988543 33222211111223456666443 44555556778888887777655554
No 288
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.32 E-value=0.38 Score=40.10 Aligned_cols=205 Identities=9% Similarity=-0.047 Sum_probs=109.1
Q ss_pred CceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCe-EEEEeCCCcEEEEEccCCcEEE
Q 020461 11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 11 ~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~ 88 (326)
..+..++|++..+ ++++-...+.|..++...+.....+.........+++.+.+.. .++-...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3457889997655 4455556788888887765543333322334567888875544 4555567789999887654333
Q ss_pred EEecC-CCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe-ccCccceeEEEEecCCcEEE-Ee
Q 020461 89 TFNFD-SPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTII-SA 164 (326)
Q Consensus 89 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~-s~ 164 (326)
..... .....+.+.+ +..+.+..... ... +.+...+ +.....+ .......+.++++|++..|+ +-
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~----~~~--I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGN----TPR--IEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSS----SCE--EEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCC----CCE--EEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 32211 2234455554 33333332211 011 1111111 1111111 22234567899998776555 44
Q ss_pred eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 165 ~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
...+.|..+|+... ....+.. ........+++. ++...++-...+.|...|..+++....+.
T Consensus 222 ~~~~~I~~~~~dG~-~~~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 222 AKHHVIERANLDGS-HRKAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTTTEEEEEETTSC-SCEEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCEEEEEeCCCC-ceEEEEe--CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 55778999998643 2222211 112234566663 44555566667778888766666555543
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.27 E-value=0.53 Score=41.22 Aligned_cols=160 Identities=11% Similarity=0.023 Sum_probs=89.1
Q ss_pred ceeEEEEccC--CCEEEeecCCCCeEEEecCCCCeeeeccCc---ccceEEEEE-------cCCCCeEEEEeCCC-c---
Q 020461 12 PLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGH---NGAVWCCDV-------SRDSMTLITGSADQ-T--- 75 (326)
Q Consensus 12 ~i~~~~~s~~--~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h---~~~V~~~~~-------~~~~~~l~s~~~d~-~--- 75 (326)
....|+|+|. ++++++-...+.|++.|.+++........- ......++| +++++.|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3578999983 445555444577888888776655433321 224788999 99998776666544 2
Q ss_pred ---EEEEEccCCcEEEEEecCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461 76 ---AKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (326)
Q Consensus 76 ---i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (326)
|.+.+..... . +.. .+ ...+...+ ....
T Consensus 220 ~~~V~~i~r~~~G---------~-----~~~~~~------------------------------~~~v~~~~----~p~g 251 (496)
T 3kya_A 220 SPSVYIIKRNADG---------T-----FDDRSD------------------------------IQLIAAYK----QCNG 251 (496)
T ss_dssp EEEEEEEECCTTS---------C-----CSTTSC------------------------------EEEEEEES----CCCC
T ss_pred CceEEEEecCCCC---------c-----eeeccc------------------------------ceeeccCC----CceE
Confidence 2222211100 0 000 00 00000111 1234
Q ss_pred EEEecCC-cEEEEeeCCCcEEEEECC-------CCcc-----------ccccccccCcceeeEEEEEcCCCCe-EEEEeC
Q 020461 152 AVWGPLN-RTIISAGEDAIVRIWDTE-------TGKL-----------LKESDKETGHKKTITSLAKAADGSH-FLTGSL 211 (326)
Q Consensus 152 ~~~~~~~-~~l~s~~~d~~i~~wd~~-------~~~~-----------~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s~ 211 (326)
++++|++ .++++-..++.|..+|+. ++.. ...+. ..+.......++++|+|.+ .++-+.
T Consensus 252 iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-~~~~~~~p~~ia~~p~G~~lYvaD~~ 330 (496)
T 3kya_A 252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-TIADPSWEFQIFIHPTGKYAYFGVIN 330 (496)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-ECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE-ecCCCCCceEEEEcCCCCEEEEEeCC
Confidence 6778854 455666778889999987 5543 01111 1122234578999999995 555566
Q ss_pred CCeEEEeec
Q 020461 212 DKSAKLWDA 220 (326)
Q Consensus 212 dg~i~iwd~ 220 (326)
.+.|+.++.
T Consensus 331 ~h~I~kid~ 339 (496)
T 3kya_A 331 NHYFMRSDY 339 (496)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEec
Confidence 778888654
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.22 E-value=0.41 Score=39.48 Aligned_cols=193 Identities=7% Similarity=0.013 Sum_probs=92.9
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCC-CC-eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 88 (326)
..+..+.+.+++..++++ .++.+ |...+ |+ .......+...+..+.+.+++++++.+...+..+-+|- .++...
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWE 197 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCE
T ss_pred CCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCcee
Confidence 346777777777766655 45543 33333 43 23333345667889999998877665544333333332 122222
Q ss_pred EEec--CCCcceeeeecCCeEEEEEcCccceec--eeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 89 TFNF--DSPARSVDFAVGDKLAVITTDPFMELN--SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 89 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
.... ......+.+.+++.+.++.....+... ..-.-|.....+. ......+..+.+.+++..++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~g 267 (327)
T 2xbg_A 198 PHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPL----------RRNSVGFLDLAYRTPNEVWLAG 267 (327)
T ss_dssp EEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTT----------SSCCSCEEEEEESSSSCEEEEE
T ss_pred ECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCc----------ccCCcceEEEEecCCCEEEEEe
Confidence 1111 112223334444444444433221111 0011111100000 0011246777888766665554
Q ss_pred eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (326)
Q Consensus 165 ~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~ 220 (326)
.++.| .+....++....+.........+.++.+.+++ .+++++.+|.|.-++-
T Consensus 268 -~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 268 -GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp -STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred -CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 46766 44455454443332111223456778776554 5777778898776653
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.75 E-value=0.6 Score=38.95 Aligned_cols=101 Identities=9% Similarity=0.017 Sum_probs=57.7
Q ss_pred cceeEEEEecCCcEEEEeeCCCcEEEEECCCCcc--ccccccccCcceeeEEEEEcCC---CCeEEEEeC-C-----CeE
Q 020461 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAAD---GSHFLTGSL-D-----KSA 215 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~h~~~v~~v~~s~~---~~~l~s~s~-d-----g~i 215 (326)
.....++|.|+++++++ ..++.|.+++ +++. +..+.....-......++++|+ +..|..+.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34568899999985554 5569999998 3332 1111111112345789999998 444444433 2 567
Q ss_pred EEeecCCcc-----eE-EEEee----ccceEEEEeCCCCCeeEEec
Q 020461 216 KLWDARTLE-----LI-KTYVT----ERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 216 ~iwd~~~~~-----~~-~~~~~----~~~~~~~~~s~~~~~~~~~~ 251 (326)
..++..... .+ ..+.. ......+++.|++. ++++.
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 777776431 11 11221 12356889999884 55443
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.64 E-value=1.8 Score=42.32 Aligned_cols=76 Identities=17% Similarity=0.099 Sum_probs=49.2
Q ss_pred CCceeEEEEccC------CCEEEeecC-CCCeEEEecCCCCeeee--ccC--cccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461 10 ERPLTYLKYNKD------GDLLFSCAK-DHTPTVWFADNGERLGT--YRG--HNGAVWCCDVSRDSMTLITGSADQTAKL 78 (326)
Q Consensus 10 ~~~i~~~~~s~~------~~~l~s~~~-d~~v~iw~~~~~~~~~~--~~~--h~~~V~~~~~~~~~~~l~s~~~d~~i~~ 78 (326)
...|.|+++.|. +++++.|.. |++++|+.+.+.+.+.. +.+ -...|.-+.+ ....+|+.|-.||.+--
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEE
Confidence 457899998864 468888886 99999999987666543 222 1112333334 23357888889998765
Q ss_pred EEc--cCCcE
Q 020461 79 WNV--ETGAQ 86 (326)
Q Consensus 79 wd~--~~~~~ 86 (326)
+.+ .+++.
T Consensus 632 ~~~d~~tg~l 641 (1158)
T 3ei3_A 632 FGLNIETGLL 641 (1158)
T ss_dssp EEECTTTCCE
T ss_pred EEEcCCCCcc
Confidence 544 44444
No 293
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.48 E-value=0.93 Score=37.83 Aligned_cols=178 Identities=13% Similarity=0.087 Sum_probs=86.0
Q ss_pred EEEeccCccceeEEEEecCCcEEEEee------------CCCcEEEEECCCCc-ccccccccc----CcceeeEEEEEcC
Q 020461 139 VLILKGPQGRINRAVWGPLNRTIISAG------------EDAIVRIWDTETGK-LLKESDKET----GHKKTITSLAKAA 201 (326)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~~l~s~~------------~d~~i~~wd~~~~~-~~~~~~~~~----~h~~~v~~v~~s~ 201 (326)
...+++.....-.+...|+|..+++++ .+|.|.++|.++.. ....+.... ...-....+.+.+
T Consensus 42 C~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~ 121 (355)
T 3sre_A 42 CNLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFI 121 (355)
T ss_dssp EEECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEE
T ss_pred CEEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEE
Confidence 333444333445666778765555542 79999999987421 112221111 0122344555443
Q ss_pred --CCC-eEEEEe-C--CCeEEEeecCCcc----eEEEEeec--cceEEEEeCCCCCeeEEecCC--CcceeEeecc--cC
Q 020461 202 --DGS-HFLTGS-L--DKSAKLWDARTLE----LIKTYVTE--RPVNAVTMSPLLDHVVLGGGQ--DASAVTTTDH--RA 265 (326)
Q Consensus 202 --~~~-~l~s~s-~--dg~i~iwd~~~~~----~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~d~--~~ 265 (326)
++. +|+.+. . +.+|.+|++.... .+.++... ...|.+.+.+++...+..... +... ...+. ..
T Consensus 122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~-~~~e~~~~~ 200 (355)
T 3sre_A 122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL-KSWEMHLGL 200 (355)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH-HHHHHHTTC
T ss_pred CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc-ccchhhccC
Confidence 443 444443 2 4678887765432 22222221 347788888877644432111 0000 00000 00
Q ss_pred ceeeeEeecccceeeeccccccCcceeEEEECCCCceEE-eecCCCcEEEeecCCC
Q 020461 266 GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS-SGGEDGYVRLHHFDPD 320 (326)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~la-t~s~Dg~i~l~~~~~~ 320 (326)
..-.+..++... +..+...-..-+.++||||++.|. +-+..+.|..|+++++
T Consensus 201 ~~g~vyr~d~~~---~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 201 AWSFVTYYSPND---VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 253 (355)
T ss_dssp CCEEEEEECTTC---CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CccEEEEEECCe---EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence 111223333211 111111123468899999998764 4456788988888754
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.40 E-value=1.1 Score=38.13 Aligned_cols=99 Identities=11% Similarity=-0.020 Sum_probs=59.4
Q ss_pred eeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC--CCeEEEeecCCcce
Q 020461 149 INRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL--DKSAKLWDARTLEL 225 (326)
Q Consensus 149 i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~--dg~i~iwd~~~~~~ 225 (326)
...+++++.++ ++++-...+.|.+.++..... ..+.. ........++++|.+.+|.-... .+.|...++.....
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~--~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEEE--CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEEe--CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 44566666444 445556677888888764332 22211 12234678999986555554442 36788888764332
Q ss_pred EEEEee--ccceEEEEeCCCCCeeEEec
Q 020461 226 IKTYVT--ERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 226 ~~~~~~--~~~~~~~~~s~~~~~~~~~~ 251 (326)
..+.. -...+.+++++....++.+-
T Consensus 238 -~~~~~~~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 238 -YSLVTENIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp -EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred -EEEEECCCCceEEEEEEeCCCEEEEEE
Confidence 22222 24678999998888887764
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.30 E-value=0.98 Score=37.03 Aligned_cols=205 Identities=9% Similarity=-0.042 Sum_probs=108.6
Q ss_pred ceeEEEEccCC-CEEEeecCCCCeEEEecCCCCeee-eccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEE
Q 020461 12 PLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 12 ~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~ 88 (326)
....++|++.. .++.+-...+.|..++...+.... .+...-.....+++.+.+. +.++-...+.|.+++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 35678898854 455555667788888876553211 1222223456788876444 44555566789999987644332
Q ss_pred EEe-cCCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-Eee
Q 020461 89 TFN-FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAG 165 (326)
Q Consensus 89 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~ 165 (326)
... .......+.+.+. ..+.+..... .. .+.+...+ .. .........-...+.++++|++..|+ +=.
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~----~~--~I~r~~~d---G~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGE----VP--KIERAGMD---GS-SRFIIINSEIYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSS----SC--EEEEEETT---SC-SCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCC----CC--EEEEEEcC---CC-CeEEEEECCCCCccEEEEeccCCEEEEEEC
Confidence 221 1122344445442 3333332110 01 11111111 11 11112222234567899999776555 445
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
..+.|..+|+... ....+.. +.......+++..+ ..+.+-...+.|..+|..+++....+.
T Consensus 186 ~~~~I~~~d~dG~-~~~~~~~--~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 186 KLNFIHKSNLDGT-NRQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTTEEEEEETTSC-SCEEEEC--SCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEcCCCC-ceEEEec--CCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCCceEEEe
Confidence 5778999998632 2222211 11233456666543 455666677889999988877665554
No 296
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.23 E-value=0.95 Score=36.48 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=36.4
Q ss_pred CCcEEEEeeCC-----CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----CeEEEeecCCcc
Q 020461 157 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE 224 (326)
Q Consensus 157 ~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 224 (326)
+++.++.|+.+ ..+.+||+.+.+.... .........-..+. -++..++.|+.+ ..+.+||+++.+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 56677777755 4588899877654321 11111111111222 256677777764 458899988764
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.16 E-value=0.61 Score=43.01 Aligned_cols=157 Identities=8% Similarity=-0.014 Sum_probs=83.5
Q ss_pred cceeEEEEecCCcEEEEe-eCCCcEEEEECCCC---ccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecC
Q 020461 147 GRINRAVWGPLNRTIISA-GEDAIVRIWDTETG---KLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 147 ~~i~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~---~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~ 221 (326)
..+..++|++.+..|+.. ...+.|+.+++... .....+. .........+++++. +.++++-...+.|.+.++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i--~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC--CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE--eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence 345678899876655544 45678999998641 1111111 011123456777754 4455565667889999987
Q ss_pred CcceEEEEee--ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461 222 TLELIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (326)
Q Consensus 222 ~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d 299 (326)
.... ..+.. ....+.++++|.+..++++.......+...+.. +. ....+. .......+.|+|+|+
T Consensus 484 g~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~---------~~~~l~--~~~l~~PnGlavd~~ 550 (699)
T 1n7d_A 484 GVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GV---------DIYSLV--TENIQWPNGITLDLL 550 (699)
T ss_dssp SCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SC---------CCCEES--CSSCSSCCCEEECTT
T ss_pred CCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CC---------CeeEEE--eCCCCCccEEEEecc
Confidence 5433 33322 235678888887777666542211122221110 00 000010 011234578999987
Q ss_pred Cce-EEeecCCCcEEEeecC
Q 020461 300 GKS-FSSGGEDGYVRLHHFD 318 (326)
Q Consensus 300 ~~~-lat~s~Dg~i~l~~~~ 318 (326)
+.. ..+-+..+.|..++++
T Consensus 551 ~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 551 SGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp TCCEEEEETTTTEEEEECSS
T ss_pred CCEEEEEecCCCeEEEEccC
Confidence 554 4555556777776664
No 298
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.97 E-value=0.61 Score=39.78 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=66.0
Q ss_pred CCCCeEEEEeCCCeEEEeecCCcceEEEEeec-----cceEEEEeCCCCCeeEEecCCCcceeEeecccCce--------
Q 020461 201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK-------- 267 (326)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 267 (326)
.+|..++.+- ++.||.-++......+.+..+ ..+.-+.++|+|+.+++.|...-..+...+.....
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 3444444433 256666665533233333332 14566899999999998876655544444322111
Q ss_pred eeeEeecccceeeeccccccCcceeEEEECCC---CceEEeecCCCcEEEeecCCC
Q 020461 268 FEAKFFDKILQEEIGGVKGHFGPINALAFNPD---GKSFSSGGEDGYVRLHHFDPD 320 (326)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d---~~~lat~s~Dg~i~l~~~~~~ 320 (326)
...+.|.... .. .....+|..+.|+|- +..|++=..|++||+|++...
T Consensus 109 ~q~~ty~l~~---~~--~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 109 FQIFHYSIDE---EE--VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp TEEEEEEGGG---CC----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred cceeEEEcCC---cc--cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 1111222110 00 113578999999995 457999999999999999863
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.90 E-value=1.4 Score=36.71 Aligned_cols=102 Identities=9% Similarity=-0.074 Sum_probs=57.2
Q ss_pred ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCc-cccccccccCcceeeEEEEEcCC---CCeEEEEeC----C----C
Q 020461 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD---GSHFLTGSL----D----K 213 (326)
Q Consensus 146 ~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~---~~~l~s~s~----d----g 213 (326)
......++|.|+++++++ ..++.|+++|. +++ .+..+.....-......++++|+ +..|..+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345678899999885554 55699999973 443 11111101111345788999997 444444332 3 5
Q ss_pred eEEEeecCCc-------ceE-EEEee--ccceEEEEeCCCCCeeEE
Q 020461 214 SAKLWDARTL-------ELI-KTYVT--ERPVNAVTMSPLLDHVVL 249 (326)
Q Consensus 214 ~i~iwd~~~~-------~~~-~~~~~--~~~~~~~~~s~~~~~~~~ 249 (326)
.|..++.... +.+ ..+.. ....+.++|.|++...++
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence 6777776543 111 11221 123567899998864443
No 300
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.65 E-value=1.5 Score=35.90 Aligned_cols=157 Identities=8% Similarity=0.011 Sum_probs=85.7
Q ss_pred ceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcce
Q 020461 148 RINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLEL 225 (326)
Q Consensus 148 ~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~ 225 (326)
....+.|++.++ .+.+-...+.|..+++..+.....+.. ........+++++. +...++-...+.|.++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence 456788988655 445656678899999875532111110 11123567888864 44555666678899999875332
Q ss_pred EEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce-
Q 020461 226 IKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS- 302 (326)
Q Consensus 226 ~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~- 302 (326)
..+. .....+.+++.|....++.+.......+...+.. +... ..+ ...--..-+.++++|++..
T Consensus 114 -~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~---------~~~--~~~~l~~Pnglavd~~~~~l 180 (318)
T 3sov_A 114 -KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSR---------FII--INSEIYWPNGLTLDYEEQKL 180 (318)
T ss_dssp -EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSC---------EEE--ECSSCSCEEEEEEETTTTEE
T ss_pred -EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCe---------EEE--EECCCCCccEEEEeccCCEE
Confidence 2222 2245788888887666665532111122221111 0000 001 0011234578999986554
Q ss_pred EEeecCCCcEEEeecCC
Q 020461 303 FSSGGEDGYVRLHHFDP 319 (326)
Q Consensus 303 lat~s~Dg~i~l~~~~~ 319 (326)
..+-+..+.|..++++-
T Consensus 181 Y~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 181 YWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEETTTTEEEEEETTS
T ss_pred EEEECCCCEEEEEcCCC
Confidence 45555567777777664
No 301
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.63 E-value=1.7 Score=36.28 Aligned_cols=59 Identities=5% Similarity=-0.032 Sum_probs=37.3
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-eeeecc---CcccceEEEEEcCC---CCeEEEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYR---GHNGAVWCCDVSRD---SMTLITG 70 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-~~~~~~---~h~~~V~~~~~~~~---~~~l~s~ 70 (326)
......++|.|+|+++++ ..++.|++++ .+++ .+..+. .-......++++|+ +..|+.+
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 345689999999986665 4558888886 4454 222221 12345788999997 4444443
No 302
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=94.47 E-value=1.7 Score=35.55 Aligned_cols=164 Identities=12% Similarity=-0.041 Sum_probs=91.3
Q ss_pred CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE-eCCCcEEEEEccCCc---EEEEEecCCCcceeeeecCCeE
Q 020461 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVETGA---QLFTFNFDSPARSVDFAVGDKL 107 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 107 (326)
..|+..++.+.+....+.. -.....++|+++++.|+.+ ...+.|..+++.+.. ....
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~------------------ 70 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------------------ 70 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE------------------
T ss_pred CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE------------------
Confidence 4678888877665444433 3456789998866555444 455777777765410 0000
Q ss_pred EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCcccccccc
Q 020461 108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDK 186 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~ 186 (326)
.+.........+++++.+. .+++-...+.|.+.|+.... ...+..
T Consensus 71 ---------------------------------~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~ 116 (316)
T 1ijq_A 71 ---------------------------------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 116 (316)
T ss_dssp ---------------------------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEE
T ss_pred ---------------------------------EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEE
Confidence 0000011234466665444 44455667889999876432 222211
Q ss_pred ccCcceeeEEEEEcCCCCeEEEEeC-C-CeEEEeecCCcceEEEEee--ccceEEEEeCCCCCeeEEec
Q 020461 187 ETGHKKTITSLAKAADGSHFLTGSL-D-KSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 187 ~~~h~~~v~~v~~s~~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~ 251 (326)
........++++|.+..|..+.. . +.|...++.. .....+.. -...+.+++++++..++.+-
T Consensus 117 --~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 117 --ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp --CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred --CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence 11235678899986665554443 3 6788887753 33333321 24578999998888777664
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.33 E-value=2 Score=35.86 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=37.5
Q ss_pred eeEEEEEcCCCCeEEEEe-CCCeEEEeecCC-cce--EEEEeeccceEEEEeCCC-CCeeE
Q 020461 193 TITSLAKAADGSHFLTGS-LDKSAKLWDART-LEL--IKTYVTERPVNAVTMSPL-LDHVV 248 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~s~~-~~~~~ 248 (326)
....++++||++.|..+. ..+.|..|+++. +.. .+.+........+++.++ |+..+
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence 467899999998776654 578899999863 322 122333456778888884 66444
No 304
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.31 E-value=3.4 Score=38.59 Aligned_cols=99 Identities=13% Similarity=0.008 Sum_probs=60.6
Q ss_pred eeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-C-CeEEEeecCCcce
Q 020461 149 INRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-D-KSAKLWDARTLEL 225 (326)
Q Consensus 149 i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-d-g~i~iwd~~~~~~ 225 (326)
...+++++.++ ++++-...++|.+.++.... ...+.. ........|+++|.+.+|.-+.. + +.|...++....
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~--~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~- 548 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD- 548 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEe--CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-
Confidence 34566776664 44455667889999886432 222211 12234788999987555554443 2 678888876433
Q ss_pred EEEEeec--cceEEEEeCCCCCeeEEec
Q 020461 226 IKTYVTE--RPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 226 ~~~~~~~--~~~~~~~~s~~~~~~~~~~ 251 (326)
...+... ...+.+++++....++++-
T Consensus 549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 549 IYSLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence 3333322 4688999998877777763
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.57 E-value=4.1 Score=36.88 Aligned_cols=205 Identities=10% Similarity=-0.018 Sum_probs=105.3
Q ss_pred CCceeEEEEccCCCEEE-eecCCCCeEEEecCCCCe-eeeccCcccceEEEEEcCCCCeEEE-EeCCCcEEEEEccCCcE
Q 020461 10 ERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLIT-GSADQTAKLWNVETGAQ 86 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~-s~~~d~~v~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~ 86 (326)
......++|++.+..|+ +=...+.|..++...... ...+..--.....+++.+.++.|+. -...+.|.+.+++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 34457888998665544 444567777777654422 2223322346788999886555544 45678899999876543
Q ss_pred EEEE-ecCCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461 87 LFTF-NFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (326)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 164 (326)
.... ..-.....+.+.+. +.+.+..... .. .+.+... +.. .........-...+.++++++++.|+.+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~----~~--~I~r~~~---dG~-~~~~l~~~~~~~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGE----VP--KIERAGM---DGS-SRFIIINSEIYWPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSS----SC--EEEEEET---TSC-SCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCC----CC--EEEEEEC---CCC-ceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence 3332 11122344555543 3343332110 01 1111111 111 1112222233456789999876655544
Q ss_pred -eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461 165 -GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (326)
Q Consensus 165 -~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (326)
...+.|...|+.... ...+.. +.......+++..+ ...+|-...+.|...|..+++....
T Consensus 189 D~~~~~I~~~~~dG~~-~~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 189 DAKLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp ETTTCCEEEESSSCCE-EC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred eCCCCeEEEecCCCCc-cEEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence 556788888886432 222211 11122346677666 4555555678888888877765443
No 306
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.54 E-value=2 Score=33.12 Aligned_cols=66 Identities=6% Similarity=-0.024 Sum_probs=39.3
Q ss_pred CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccce--------EEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV--------WCCDVSRDSMTLITGSADQTAKLWNV 81 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V--------~~~~~~~~~~~l~s~~~d~~i~~wd~ 81 (326)
..+..++|+|+|.+.+. .+|.+.-.+..+.... .+-+-...| .++.|.+++.+-++ .||.|.-++.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 46789999999997666 5565444443332111 111112223 57888999876665 6687765553
No 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.47 E-value=2.5 Score=33.98 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=35.4
Q ss_pred cCCCEEEeecCC-----CCeEEEecCCCC---eeee--ccCcccceEEEEEcCCCCeEEEEeCC-----CcEEEEEccCC
Q 020461 20 KDGDLLFSCAKD-----HTPTVWFADNGE---RLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETG 84 (326)
Q Consensus 20 ~~~~~l~s~~~d-----~~v~iw~~~~~~---~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~ 84 (326)
.++++++.|+.+ ..+.+||..+.+ .... +......-.++.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 456777777654 467888888776 4322 2111111111222 56666777654 35778888776
Q ss_pred c
Q 020461 85 A 85 (326)
Q Consensus 85 ~ 85 (326)
+
T Consensus 139 ~ 139 (301)
T 2vpj_A 139 Q 139 (301)
T ss_dssp E
T ss_pred e
Confidence 4
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.37 E-value=2.6 Score=33.96 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=29.1
Q ss_pred EEEeecC--CCCeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCC----CcEEEEEccCC
Q 020461 24 LLFSCAK--DHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVETG 84 (326)
Q Consensus 24 ~l~s~~~--d~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~ 84 (326)
+++.|+. ...+.+||..+.+.... +......-.++. .+++.++.|+.+ ..+.+||+.++
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKD 80 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTT
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCC
Confidence 4445554 35778888887765422 111111111111 255666666654 34555665544
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.26 E-value=2.7 Score=33.80 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=35.0
Q ss_pred CCcEEEEeeCC-------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----CeEEEeecCCcc
Q 020461 157 LNRTIISAGED-------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE 224 (326)
Q Consensus 157 ~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 224 (326)
+++.++.|+.+ ..+.+||+.+.+.... ............+. -++..++.|+.+ ..+.+||+++.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-AEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-CCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-CCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 45666666643 3588899877654321 11111111111222 256677777764 358889988754
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.23 E-value=2.7 Score=33.82 Aligned_cols=64 Identities=6% Similarity=0.091 Sum_probs=36.1
Q ss_pred cCCCEEEeecCC----CCeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCC------CcEEEEEccCCc
Q 020461 20 KDGDLLFSCAKD----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGA 85 (326)
Q Consensus 20 ~~~~~l~s~~~d----~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~ 85 (326)
.++.+++.|+.+ ..+.+||..+.+.... +......-..+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 356677777654 5667788877754322 2111111111222 56677777765 457888988764
No 311
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.95 E-value=2.5 Score=35.12 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=37.9
Q ss_pred eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE--EEEe-----eccceEEEEeCCC---CCeeEE
Q 020461 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYV-----TERPVNAVTMSPL---LDHVVL 249 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~-----~~~~~~~~~~s~~---~~~~~~ 249 (326)
....+++.|||..+++--..|.|++++...++.. ..+. ...-...++++|+ ...+++
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 4578999999987777665899999987655432 1111 1234678999985 344554
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.27 E-value=4.3 Score=33.69 Aligned_cols=72 Identities=7% Similarity=0.000 Sum_probs=45.5
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe--eeecc---CcccceEEEEEcCC---CCeEEEEeC-C-----Cc
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR---GHNGAVWCCDVSRD---SMTLITGSA-D-----QT 75 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~---~h~~~V~~~~~~~~---~~~l~s~~~-d-----~~ 75 (326)
......++|.|+|+++++ ..++.|++++ +++. +..+. .-......++++|+ +..|+.+.. . ..
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 445689999999996665 4568888887 4432 22221 12345788999998 555544433 2 56
Q ss_pred EEEEEccCC
Q 020461 76 AKLWNVETG 84 (326)
Q Consensus 76 i~~wd~~~~ 84 (326)
|..++...+
T Consensus 107 v~r~~~~~~ 115 (352)
T 2ism_A 107 VVRLRHLGE 115 (352)
T ss_dssp EEEEEECSS
T ss_pred EEEEEeCCC
Confidence 777777643
No 313
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.23 E-value=4.4 Score=33.65 Aligned_cols=110 Identities=10% Similarity=-0.020 Sum_probs=61.6
Q ss_pred EeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccc--cccc-cccCcceeeEEEEEcCC----CCeEEEE--eC
Q 020461 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESD-KETGHKKTITSLAKAAD----GSHFLTG--SL 211 (326)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~-~~~~h~~~v~~v~~s~~----~~~l~s~--s~ 211 (326)
.+.........++|.|++.++++--..|.|++++...++.. ..+. ....-......++++|+ +...++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 33344455678999999998777666899999986655431 1111 11122456789999985 4333332 23
Q ss_pred CCeEEEeecCCc----------ceE-EEEee--ccceEEEEeCCCCCeeEEe
Q 020461 212 DKSAKLWDARTL----------ELI-KTYVT--ERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 212 dg~i~iwd~~~~----------~~~-~~~~~--~~~~~~~~~s~~~~~~~~~ 250 (326)
++.|.-|..... +.+ ..+.. .+....+.|.|++...+..
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE
Confidence 445555554431 111 11211 2245678999988544443
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.23 E-value=3.8 Score=33.03 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=36.1
Q ss_pred CCcEEEEeeCC-----CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----CeEEEeecCCcc
Q 020461 157 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE 224 (326)
Q Consensus 157 ~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 224 (326)
+++.++.|+.+ ..+.+||+.+.+... +.........-.++.+ ++..++.|+.+ ..+.+||+.+.+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRM-ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEee-CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 45667777664 458889987665432 1111111111122222 56677777664 458899988754
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.12 E-value=4.5 Score=33.59 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=54.3
Q ss_pred cceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccc---ccccc-ccCcceeeEEEEEcCC----CCeEEEEeC------
Q 020461 147 GRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLL---KESDK-ETGHKKTITSLAKAAD----GSHFLTGSL------ 211 (326)
Q Consensus 147 ~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~---~~~~~-~~~h~~~v~~v~~s~~----~~~l~s~s~------ 211 (326)
.....++|.|+++ +++ +...|.|++++.. ++.. ..+.. ..........++++|+ +...++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3456789999998 555 4567999999853 3221 11110 0111334688999995 444444332
Q ss_pred -CCeEEEeecCCc--c--eEEEEe---e-----ccceEEEEeCCCCCeeEEec
Q 020461 212 -DKSAKLWDARTL--E--LIKTYV---T-----ERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 212 -dg~i~iwd~~~~--~--~~~~~~---~-----~~~~~~~~~s~~~~~~~~~~ 251 (326)
...|..++.... . ..+.+. . ......++|.|++. ++++.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 147 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIAL 147 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEE
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEE
Confidence 224555655422 1 111111 1 12256799999884 44443
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.94 E-value=5.7 Score=34.37 Aligned_cols=58 Identities=9% Similarity=-0.009 Sum_probs=36.2
Q ss_pred eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE--EEEe-------eccceEEEEeCCC---CCeeEEe
Q 020461 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYV-------TERPVNAVTMSPL---LDHVVLG 250 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~-------~~~~~~~~~~s~~---~~~~~~~ 250 (326)
....+++.|+|..+++-...+.|++++..+++.. ..+. .+.-...++++|+ ...++++
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 3568999999987766554457888876554432 1211 1123458999996 5556554
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.58 E-value=5.9 Score=33.85 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=50.0
Q ss_pred ccceeEEEEecCC---cEEEEeeCCCcEEEEECCCCccc-cccc------cccCcceeeEEEEEcCCCCeEEEEe--CCC
Q 020461 146 QGRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLL-KESD------KETGHKKTITSLAKAADGSHFLTGS--LDK 213 (326)
Q Consensus 146 ~~~i~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~-~~~~------~~~~h~~~v~~v~~s~~~~~l~s~s--~dg 213 (326)
..+|.++.|||.+ ..|++-..|+.|++||+...... ..+. ........+.+++|.+++-.|...+ ..|
T Consensus 124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~G 203 (452)
T 3pbp_A 124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGG 203 (452)
T ss_dssp CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSC
T ss_pred CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCC
Confidence 5789999999975 58999999999999999752211 0111 1112336788899998877666644 667
Q ss_pred eEEEe
Q 020461 214 SAKLW 218 (326)
Q Consensus 214 ~i~iw 218 (326)
-|+-.
T Consensus 204 DIYAl 208 (452)
T 3pbp_A 204 DIFAF 208 (452)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 66544
No 318
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=90.80 E-value=9.2 Score=34.66 Aligned_cols=201 Identities=8% Similarity=-0.036 Sum_probs=108.3
Q ss_pred CceeEEEEccCCCE-EEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEE
Q 020461 11 RPLTYLKYNKDGDL-LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF 88 (326)
Q Consensus 11 ~~i~~~~~s~~~~~-l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~ 88 (326)
..+..++|++.... +++-..++.|+.++.........+..-......+++.+.++.| ++-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 35678999986655 4455567888888876544333333222346678887665555 444456788888887654322
Q ss_pred EE-ecCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe-e
Q 020461 89 TF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-G 165 (326)
Q Consensus 89 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 165 (326)
.. ..-.....+.+.+ ...+.+..... .. .+.+... +.. ....+.......+.++++++++.|+.+ .
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~----~~--~I~r~~~---dG~--~~~~l~~~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGG----KP--KIDRAAM---DGS--ERTTLVPNVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSS----SC--EEEEEET---TSC--SCEEEECSCSSEEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCC----CC--EEEEEeC---CCC--ceEEEECCCCCcceEEEccccCEEEEEEC
Confidence 22 1112234455554 23333332110 01 1111111 111 111222234567789999987666544 5
Q ss_pred CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (326)
Q Consensus 166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (326)
..+.|...|+..... ..+... ......+++.. +...+|-...+.|...|..+++...
T Consensus 186 ~~~~I~~~d~dG~~~-~v~~~~---l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 186 DTNLIESSNMLGLNR-EVIADD---LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp TTTEEEEEETTSCSC-EEEEEC---CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCEEEEEcCCCCce-EEeecc---CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 577899999864332 222211 22345677665 4455555567888888876665433
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=89.04 E-value=7.6 Score=31.06 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=33.9
Q ss_pred CCCEEEeecCC-----CCeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCCC-----cEEEEEccCCc
Q 020461 21 DGDLLFSCAKD-----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSADQ-----TAKLWNVETGA 85 (326)
Q Consensus 21 ~~~~l~s~~~d-----~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 85 (326)
++.+++.|+.+ ..+.+||..+.+.... +......-.++.+ +++.++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 56677777644 3567788877654322 2111111111222 566667777553 46677877654
No 320
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=88.96 E-value=8.7 Score=31.62 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=27.2
Q ss_pred CCCEEEeecC-C---------CCeEEEecCCCCeeeeccCc-ccce-EEEEEcCCCCeEEEEeCC
Q 020461 21 DGDLLFSCAK-D---------HTPTVWFADNGERLGTYRGH-NGAV-WCCDVSRDSMTLITGSAD 73 (326)
Q Consensus 21 ~~~~l~s~~~-d---------~~v~iw~~~~~~~~~~~~~h-~~~V-~~~~~~~~~~~l~s~~~d 73 (326)
++++++.|+. + ..+.+||..+.+....-.-. ...- .++.. .+++.++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 5676666665 2 46778888877654321111 1111 11112 456777777754
No 321
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=88.74 E-value=3.6 Score=31.67 Aligned_cols=107 Identities=12% Similarity=0.105 Sum_probs=55.6
Q ss_pred eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce------EEEEee--ccceEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLEL------IKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~ 264 (326)
.+..++++|+|.+.+. .+|.++-.+..+.+. -..+-. -....++.+.|++...++ .++. +.-.+..
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav---~dG~-iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV---SKDK-LYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE---ETTE-EEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe---CCCE-EEEeCCC
Confidence 5679999999875555 677777767654211 111100 011367888888766555 2222 2222211
Q ss_pred CceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcE
Q 020461 265 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV 312 (326)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i 312 (326)
..... .|-.. ...++. +-=..+..|.|.|+|.+.|.. |+.+
T Consensus 116 ~~~~~--~Wl~~-a~~vg~--~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 116 QSDTD--NWIAR-ATEVGS--GGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp CSTTC--CHHHH-SEEEEC--SSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred cCCCC--ceecc-ccEecc--CCCCceEEEEECCCceEEEEe--CCcE
Confidence 11100 11100 111110 001357899999999998877 7765
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=88.46 E-value=20 Score=35.20 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=26.4
Q ss_pred CcceeEEEECCC------CceEEeecC-CCcEEEeecCC
Q 020461 288 FGPINALAFNPD------GKSFSSGGE-DGYVRLHHFDP 319 (326)
Q Consensus 288 ~~~v~~v~~s~d------~~~lat~s~-Dg~i~l~~~~~ 319 (326)
...|.|+++.|. +.++|.|.+ |++|+|++++.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 357999999863 468999997 99999999974
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=87.00 E-value=11 Score=30.37 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=34.1
Q ss_pred CCCEEEeecC----C-----CCeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCC-----CcEEEEEccCC
Q 020461 21 DGDLLFSCAK----D-----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETG 84 (326)
Q Consensus 21 ~~~~l~s~~~----d-----~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~ 84 (326)
++++++.|+. + ..+.+||..+.+.... +......-..+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5666666665 2 4677888877654322 1111111111222 56666666643 35778888765
Q ss_pred c
Q 020461 85 A 85 (326)
Q Consensus 85 ~ 85 (326)
+
T Consensus 148 ~ 148 (308)
T 1zgk_A 148 E 148 (308)
T ss_dssp E
T ss_pred e
Confidence 4
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.12 E-value=34 Score=34.46 Aligned_cols=129 Identities=6% Similarity=0.063 Sum_probs=74.9
Q ss_pred CCeEEEecCCCCeeeeccCcccceE--EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEE
Q 020461 32 HTPTVWFADNGERLGTYRGHNGAVW--CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~~~~h~~~V~--~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (326)
.+|.|-|+.++..+.. .++. +.-.+|..+.++--. ..+++++|+++...+..+.++.++..-.|...+.+..
T Consensus 48 ~~vvIidl~~~~~~~r-----rpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIR-----RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL 121 (1630)
T ss_pred ceEEEEECCCCCCccc-----ccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEE
Confidence 3566667666543311 1111 122467666665554 6789999999888888888877777777877777776
Q ss_pred EEcCccceeceeeeeeeeccCCCCCCCceEEEeccC----ccceeEEEEecCCcEEEEe-------eCCCcEEEEECCCC
Q 020461 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP----QGRINRAVWGPLNRTIISA-------GEDAIVRIWDTETG 178 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~s~-------~~d~~i~~wd~~~~ 178 (326)
++..... -|.+.. ...+...+.-| ...|.....+++.++++.. .-.|.+.+|..+.+
T Consensus 122 VT~~aVy-------HW~~~~-----~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 122 VTDNAVY-------HWSMEG-----ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred EcCCeEE-------EeccCC-----CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence 6554332 222211 11222222222 2456666677777776532 23577888887654
No 325
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=83.95 E-value=17 Score=30.00 Aligned_cols=169 Identities=8% Similarity=0.105 Sum_probs=96.9
Q ss_pred CCeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEE
Q 020461 32 HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (326)
Q Consensus 32 ~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (326)
..|.|-|++++..+.. +.+ . +.-.+|..+.++--. ..+++++|+++.+.+..+.+..++..-+|...+.+..
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~A-d----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~l 122 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISA-D----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL 122 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCC-S----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEE
T ss_pred CEEEEEECCCCCCcccccccc-c----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEE
Confidence 3677777776554321 222 1 122478777776665 6789999999999998888888888778888888877
Q ss_pred EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc----cceeEEEEecCCcEEEEee-------CCCcEEEEECCCC
Q 020461 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ----GRINRAVWGPLNRTIISAG-------EDAIVRIWDTETG 178 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~s~~-------~d~~i~~wd~~~~ 178 (326)
+...... -|.+.. ...+...+.-|. ..|.....+++.++++..| -.|.+.+|..+.+
T Consensus 123 VT~taVy-------HWs~~~-----~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 190 (365)
T 2xzh_A 123 VTDNAVY-------HWSMEG-----ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 190 (365)
T ss_dssp EESSEEE-------EEESST-----TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred EcCCcEE-------EEcccC-----CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc
Confidence 7655432 232211 223444444332 3566666778888665322 2356778887654
Q ss_pred ccccccccccCcceeeEEEEEcCC--CCeEEE-EeC---CCeEEEeecCC
Q 020461 179 KLLKESDKETGHKKTITSLAKAAD--GSHFLT-GSL---DKSAKLWDART 222 (326)
Q Consensus 179 ~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s-~s~---dg~i~iwd~~~ 222 (326)
.. ....||-+.-..+....+ ...|++ +.. .+.+++-++..
T Consensus 191 ~s----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~ 236 (365)
T 2xzh_A 191 VS----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 236 (365)
T ss_dssp EE----EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSS
T ss_pred cc----ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 22 122456544333332211 122332 221 25788888754
No 326
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.10 E-value=17 Score=31.41 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCC-eEEEEeCCCeEEEeecC
Q 020461 193 TITSLAKAADGS-HFLTGSLDKSAKLWDAR 221 (326)
Q Consensus 193 ~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~ 221 (326)
....+++.|+|. .|+.+...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 357889999986 56666778999999754
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=81.75 E-value=8.3 Score=31.82 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=26.8
Q ss_pred CCCeEEEEeCCCeEEEeecCCcceEEEEeec
Q 020461 202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232 (326)
Q Consensus 202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 232 (326)
.+..+++|+.+|.+.-.|+++|+.+.++...
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 3557899999999999999999999888644
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.21 E-value=12 Score=35.87 Aligned_cols=38 Identities=26% Similarity=0.174 Sum_probs=33.1
Q ss_pred eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
.+.+++..++..+++|-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667777888899999999999999999999988864
No 329
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.18 E-value=7.7 Score=37.18 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=31.5
Q ss_pred ceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccc
Q 020461 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184 (326)
Q Consensus 148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 184 (326)
.+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4667777888889999999999999999999887653
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=79.61 E-value=22 Score=28.49 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=16.7
Q ss_pred CCcEEEEeeCCC-----cEEEEECCCCcc
Q 020461 157 LNRTIISAGEDA-----IVRIWDTETGKL 180 (326)
Q Consensus 157 ~~~~l~s~~~d~-----~i~~wd~~~~~~ 180 (326)
+++.++.||.++ .+.+||+.+.+.
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 556777777654 488899877644
No 331
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=79.15 E-value=30 Score=29.80 Aligned_cols=170 Identities=8% Similarity=0.107 Sum_probs=99.0
Q ss_pred CCCeEEEecCCCCeee--eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461 31 DHTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (326)
Q Consensus 31 d~~v~iw~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (326)
+..|.|-|+.++..+. .+.+ . +.-.+|..+.++--. ..+++++|+++...+..+.+..++..-.|...+.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A-d----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA-D----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC-S----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEE
T ss_pred CCeEEEEECCCCCcceeccccc-c----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEE
Confidence 3366677777654432 1111 1 223577777776655 678999999999989888888888888888888887
Q ss_pred EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc----cceeEEEEecCCcEEEEee-------CCCcEEEEECCC
Q 020461 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ----GRINRAVWGPLNRTIISAG-------EDAIVRIWDTET 177 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~s~~-------~d~~i~~wd~~~ 177 (326)
.+...... -|.+.. ...+...+.-|. ..|.....+++.++++..| -.|.+.+|..+.
T Consensus 121 lVT~taVy-------HWsi~~-----~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 121 LVTDNAVY-------HWSMEG-----ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp EECSSEEE-------EEESSS-----SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred EEcCCeeE-------EecccC-----CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 76654332 233211 223444444332 4566666788888765322 245678888765
Q ss_pred CccccccccccCcceeeEEEEEcCC--CCeEEE-EeC---CCeEEEeecCC
Q 020461 178 GKLLKESDKETGHKKTITSLAKAAD--GSHFLT-GSL---DKSAKLWDART 222 (326)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s-~s~---dg~i~iwd~~~ 222 (326)
+.. ....||-..-..+....+ ...|++ +.. .+.+++-++..
T Consensus 189 ~~s----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 189 KVS----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (494)
T ss_dssp CCE----EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred ccc----chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 432 122466554444433322 112332 222 26788888754
No 332
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=79.06 E-value=23 Score=31.55 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=47.2
Q ss_pred eEEEEecCCcEEE-EeeCCCcEEEEECCCCccc---------cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461 150 NRAVWGPLNRTII-SAGEDAIVRIWDTETGKLL---------KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (326)
Q Consensus 150 ~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~---------~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd 219 (326)
..+..+|+|++++ +|--+.++.++|.++-... ..+.....-.-.....+|+++|....|--.|..|-.|+
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 3577899999776 4556889999998742110 00000111123467889999994444445799999999
Q ss_pred cCC
Q 020461 220 ART 222 (326)
Q Consensus 220 ~~~ 222 (326)
+..
T Consensus 406 i~~ 408 (638)
T 3sbq_A 406 MEE 408 (638)
T ss_dssp HHH
T ss_pred ccH
Confidence 875
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=78.71 E-value=40 Score=30.92 Aligned_cols=65 Identities=6% Similarity=0.033 Sum_probs=35.9
Q ss_pred cCCCEEEeecCC----CCeEEEecCCCCeeeec-c-----Ccccc-eEEEEEcC-CCCeEEEEeCCC------cEEEEEc
Q 020461 20 KDGDLLFSCAKD----HTPTVWFADNGERLGTY-R-----GHNGA-VWCCDVSR-DSMTLITGSADQ------TAKLWNV 81 (326)
Q Consensus 20 ~~~~~l~s~~~d----~~v~iw~~~~~~~~~~~-~-----~h~~~-V~~~~~~~-~~~~l~s~~~d~------~i~~wd~ 81 (326)
.++.+++.|+.+ ..+.+||..+++....- . ..... =.++...+ +++.++.||.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 566777777743 45778888877654322 1 01111 11222222 667777777543 4678888
Q ss_pred cCC
Q 020461 82 ETG 84 (326)
Q Consensus 82 ~~~ 84 (326)
.+.
T Consensus 476 ~t~ 478 (695)
T 2zwa_A 476 KTR 478 (695)
T ss_dssp TTT
T ss_pred CCC
Confidence 765
No 334
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=77.19 E-value=42 Score=30.36 Aligned_cols=205 Identities=9% Similarity=-0.021 Sum_probs=110.2
Q ss_pred CceeEEEEccCCCEEE-eecCCCCeEEEecCCCCeeeeccC------cccceEEEEEcCCCCeE-EEEeCCCcEEEEEcc
Q 020461 11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRG------HNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVE 82 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~-s~~~d~~v~iw~~~~~~~~~~~~~------h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~ 82 (326)
..+..++|++..+.|+ +=...+.|+.++.........+.. .-..+..+++...++.| ++-+..+.|.+.+++
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 4567899998665544 444567787777654332222322 23357889998876655 455567888888886
Q ss_pred CCcEEEEE-e-cCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461 83 TGAQLFTF-N-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (326)
Q Consensus 83 ~~~~~~~~-~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (326)
. +....+ . .....+.+.+.+ ...+.+...... .-++.+... +... ........-...+.+++++..+
T Consensus 420 G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~-----~~~I~r~~~---dG~~-~~~l~~~~l~~P~gla~D~~~~ 489 (628)
T 4a0p_A 420 G-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQER-----SPKIERAAL---DGTE-REVLFFSGLSKPIALALDSRLG 489 (628)
T ss_dssp S-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETT-----EEEEEEEET---TSCS-CEEEECSSCSCEEEEEEETTTT
T ss_pred C-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCC-----CCeEEEEeC---CCCC-cEEEEeccCCCccEEEEeCCCC
Confidence 4 333222 1 123345555655 344433321110 001222211 1111 2222233344568899999877
Q ss_pred EEEEe-eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461 160 TIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 160 ~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
.|+-+ +..+.|...|+. |+..+.+.. ........++... +..+.+-...+.|...|..+++....+
T Consensus 490 ~LYw~D~~~~~I~~~~~d-G~~r~~~~~--~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 490 KLFWADSDLRRIESSDLS-GANRIVLED--SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp EEEEEETTTTEEEEEETT-SCSCEEEEC--SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred EEEEEeCCCCEEEEEeCC-CCceEEEEc--CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 66655 446789999985 333333321 1122345666655 445556556677888887777654444
No 335
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.96 E-value=3.6 Score=40.31 Aligned_cols=38 Identities=26% Similarity=0.174 Sum_probs=32.1
Q ss_pred eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
.+.+++..++..+++|-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34455666788899999999999999999999988864
No 336
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=71.95 E-value=15 Score=32.98 Aligned_cols=58 Identities=26% Similarity=0.181 Sum_probs=38.6
Q ss_pred eeEEEEccCCCEEEeecCC----------C--CeEEEecCCCCeeeeccCccc-ceEEEEEcCCCCeEEEE
Q 020461 13 LTYLKYNKDGDLLFSCAKD----------H--TPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSMTLITG 70 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d----------~--~v~iw~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~l~s~ 70 (326)
.-.|.|+|.|.++++-..+ + .+.+.+..+++...-+.+..+ .+..++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3578999999977664332 1 233335556776666666554 68999999998876543
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=71.76 E-value=37 Score=27.16 Aligned_cols=66 Identities=9% Similarity=0.175 Sum_probs=35.8
Q ss_pred cCCcEEEEeeC-C-----CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC-----eEEEeecCCcc
Q 020461 156 PLNRTIISAGE-D-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLE 224 (326)
Q Consensus 156 ~~~~~l~s~~~-d-----~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg-----~i~iwd~~~~~ 224 (326)
-+++.++.||. + ..+.+||+.+.+... +.........-.++. -++..++.|+.++ .+..||+.+.+
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-CCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 34566677776 2 368899987764432 111111111111222 2566777777654 47888887753
No 338
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=71.30 E-value=8.3 Score=35.33 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee
Q 020461 194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (326)
Q Consensus 194 v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (326)
|.++.+ +..+++|-+.|.++|+||+++++++.+...
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444443 467999999999999999999999888754
No 339
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=70.35 E-value=62 Score=29.19 Aligned_cols=74 Identities=9% Similarity=-0.071 Sum_probs=46.1
Q ss_pred CceeEEEEccCC-CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC--CCcEEEEEccCC
Q 020461 11 RPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLWNVETG 84 (326)
Q Consensus 11 ~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~ 84 (326)
.....+++++.+ +++++-..++.|.+.++........+...-..-..|++.|.+.+|+-+.. ...|...+++..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence 456789999854 45666667788999887654432222233334567889887666655553 355655566543
No 340
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=67.28 E-value=7.3 Score=35.70 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=28.9
Q ss_pred ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc
Q 020461 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR 49 (326)
Q Consensus 12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 49 (326)
.|.++.+ +..++++-+.|+++|+|+++++.++.+..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4565554 47799999999999999999998876543
No 341
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.05 E-value=4.5 Score=39.65 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=30.4
Q ss_pred eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec
Q 020461 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY 48 (326)
Q Consensus 13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 48 (326)
+.+++..++..++++-+.|+++|||++.++.++.+.
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 445566778889999999999999999999988764
No 342
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=64.40 E-value=38 Score=30.25 Aligned_cols=60 Identities=23% Similarity=0.146 Sum_probs=39.8
Q ss_pred CceeEEEEccCCCEEEeecCC------------CCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEEE
Q 020461 11 RPLTYLKYNKDGDLLFSCAKD------------HTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITG 70 (326)
Q Consensus 11 ~~i~~~~~s~~~~~l~s~~~d------------~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~ 70 (326)
.....|.|+++|.+.++.... ..+..++..+++....+.+.. ..++.++|+||++.|+.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 345689999999987743221 134444555677655554433 468999999999877665
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=61.90 E-value=64 Score=26.54 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=42.0
Q ss_pred cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE---cCCCCeEEEE-eCCCeEEEeecCCcceEEEE
Q 020461 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK---AADGSHFLTG-SLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~---s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~ 229 (326)
..++.++.||.|.-+|.++|+..-.+... ...++....- ..++..++.. +.||.|..+|.+++.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 36788999999999999888765443321 1112222110 1133333343 68999999999888554444
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=60.63 E-value=69 Score=26.29 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=36.0
Q ss_pred CceeEEEEccCCC-EEEeecCCCCeEEEecCCCCe---eeec----cCcccceEEEEEcCC---CCeEEEE
Q 020461 11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGER---LGTY----RGHNGAVWCCDVSRD---SMTLITG 70 (326)
Q Consensus 11 ~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~---~~~~----~~h~~~V~~~~~~~~---~~~l~s~ 70 (326)
.....++|.|+|+ +++ +...+.|++++. ++.. +..+ ....+....++++|+ +..|+.+
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 4458999999999 665 456788888874 3322 1111 112345688999996 4444443
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=58.33 E-value=1.6e+02 Score=29.88 Aligned_cols=204 Identities=10% Similarity=0.027 Sum_probs=97.4
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC-cEEEEEecC
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFNFD 93 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~ 93 (326)
++-.+|..+.||--. ..++.|+|+++...++.+.- ..+|.-=.|-.+. .|+-.. +..|--|++... .+...+..+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 445678888888765 67999999988877665544 3345444554333 233222 236889999642 222222211
Q ss_pred -----CCcceeeeecCCeEEEEEcCc--cceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe--cCC-cEEEE
Q 020461 94 -----SPARSVDFAVGDKLAVITTDP--FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG--PLN-RTIIS 163 (326)
Q Consensus 94 -----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~~l~s 163 (326)
..+......++.+.+++.+-. ...+.+.+.+....+. ....++||.+.-...... +.. ..+..
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F~~~~~~~~~~~~~l~~f 218 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCF 218 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhHhhhheeccCCCCCCceEEEE
Confidence 112222233344433332210 0112222222222111 111223333221111111 111 12222
Q ss_pred eeC---CCcEEEEECCCC---c-ccc----cc-ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461 164 AGE---DAIVRIWDTETG---K-LLK----ES-DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (326)
Q Consensus 164 ~~~---d~~i~~wd~~~~---~-~~~----~~-~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (326)
+.. .+.++|.++... . ... .+ .+...-..-..++..++.-..+..-+.-|.|.++|+.|+.++..-
T Consensus 219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 211 267888887432 1 110 00 000111223456677777777778888899999999999887654
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=57.95 E-value=72 Score=25.61 Aligned_cols=86 Identities=7% Similarity=-0.137 Sum_probs=42.3
Q ss_pred EecCCcEEEEeeC--------------CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe--CC--CeE
Q 020461 154 WGPLNRTIISAGE--------------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LD--KSA 215 (326)
Q Consensus 154 ~~~~~~~l~s~~~--------------d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s--~d--g~i 215 (326)
+++++.+|+.+.. ...|+..++..++.. .+.. . .+..+++++..|+=.. .+ ..|
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~-----~--~~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP-----D--PCIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC-----S--CEEEEEEETTEEEEEEESSSSCEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec-----C--CccEEEEeCCEEEEEeecCCCCceE
Confidence 4566666665543 235677776654321 1211 1 1225566777777554 33 345
Q ss_pred EEeecCCcceEEEEeeccceEEEEeCCCCCeeEEec
Q 020461 216 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 216 ~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 251 (326)
+.-++...+ ...+... .+ ..+++.++.++.+.
T Consensus 132 y~~~~dGs~-~~~lt~~-~~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 132 YRIRIDGEE-KKKIKNH-YL--FTCNTSDRYFYYNN 163 (302)
T ss_dssp EEEETTSCC-CEEEESS-CC--CCSEEETTEEEEEC
T ss_pred EEEECCCCC-eEEEeCC-Cc--eEeeEECCEEEEEe
Confidence 555555332 2333222 11 34566677666553
No 347
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=57.06 E-value=73 Score=25.40 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=34.3
Q ss_pred cCCcEEEEeeC------CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----CeEEEeecCCcc
Q 020461 156 PLNRTIISAGE------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE 224 (326)
Q Consensus 156 ~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 224 (326)
.+++.++.||. -..+.++|+.+.+.... .........- +++. -++..++.|+.+ ..+.+||+.+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL-APMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC-CCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 35666677764 23588999887654321 1111111111 1222 255666777643 246788887654
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=56.90 E-value=94 Score=26.67 Aligned_cols=61 Identities=7% Similarity=-0.022 Sum_probs=39.0
Q ss_pred CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe--eeeccC------cccceEEEEEcCC---CCeEEEE
Q 020461 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRG------HNGAVWCCDVSRD---SMTLITG 70 (326)
Q Consensus 10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~------h~~~V~~~~~~~~---~~~l~s~ 70 (326)
......++|.|+|+++++-...+.|++++..++.. +..+.. ..+....|+|+|+ +..|+.+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 44567999999999887655445688777555543 222321 2345779999995 4444443
No 349
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=51.71 E-value=1e+02 Score=25.50 Aligned_cols=205 Identities=10% Similarity=0.019 Sum_probs=108.3
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC-CcEEEEEecC
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFNFD 93 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~ 93 (326)
++-.+|..+.||--. ..++.|+|+++..+++.+.-. ..|.-=.|-.+. .|+-... ..|--|++.. ..+...+..+
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT~-taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEES-SEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEcC-CcEEEEcccCCCCCceeeecc
Confidence 556789999888765 578999999999888766543 455545564433 3333333 3688999874 3444445432
Q ss_pred CC-----cceeeeecCCeEEEEEcC--ccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe--cCC-cEEEE
Q 020461 94 SP-----ARSVDFAVGDKLAVITTD--PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG--PLN-RTIIS 163 (326)
Q Consensus 94 ~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~~l~s 163 (326)
.. +......++.+.+++.+- ....+.+.+.+....+ ..-..++||.+.-..+... +.. ..|+.
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f 219 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCF 219 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-------TEEEEECCSEEEEEEECCTTCSSCEEEEEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-------cccceeeeeeeeeEEEecCCCCCCceEEEE
Confidence 21 122223344444433221 0112223333333222 1233445554322111111 111 12332
Q ss_pred eeC---CCcEEEEECCCC---cc-cc----c-cccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 164 AGE---DAIVRIWDTETG---KL-LK----E-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 164 ~~~---d~~i~~wd~~~~---~~-~~----~-~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
+.. .+.+++.++... .. .. + ..+...-..-..++..|+.-..+..-+.-|.|+++|+.++.++..-.
T Consensus 220 a~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 220 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp EEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec
Confidence 222 257888887432 11 10 0 00111112334567777776778888888999999999999887754
No 350
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=51.57 E-value=90 Score=24.83 Aligned_cols=66 Identities=8% Similarity=0.038 Sum_probs=33.6
Q ss_pred EccCCCEEEeecC----CC---C----eEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCC-------CcEE
Q 020461 18 YNKDGDLLFSCAK----DH---T----PTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-------QTAK 77 (326)
Q Consensus 18 ~s~~~~~l~s~~~----d~---~----v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d-------~~i~ 77 (326)
...++.+++.|+. ++ . +.+||..+.+.... +......-..+.+ +++.++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3456777777773 12 1 56778777655322 1111111111112 56666677754 2467
Q ss_pred EEEccCCc
Q 020461 78 LWNVETGA 85 (326)
Q Consensus 78 ~wd~~~~~ 85 (326)
+||+.+.+
T Consensus 131 ~yd~~~~~ 138 (318)
T 2woz_A 131 CYDPVAAK 138 (318)
T ss_dssp EEETTTTE
T ss_pred EEeCCCCC
Confidence 77877654
No 351
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=47.17 E-value=1.4e+02 Score=25.83 Aligned_cols=205 Identities=11% Similarity=0.027 Sum_probs=108.3
Q ss_pred EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC-cEEEEEecC
Q 020461 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFNFD 93 (326)
Q Consensus 15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~ 93 (326)
++-.+|..+.||--. ..++.|+|+++..+++.+.-.. .|.-=.|-.+. .|+-.. +..|--|++... .+...+..+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 566789889888765 6799999999988877665433 44333443332 333333 346889998643 344444432
Q ss_pred CC-----cceeeeecCCeEEEEEcC--ccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--C-cEEEE
Q 020461 94 SP-----ARSVDFAVGDKLAVITTD--PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--N-RTIIS 163 (326)
Q Consensus 94 ~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~l~s 163 (326)
.. +......++.+.+++.+- ....+.+.+.+....+ ..-..++||.+.-..+....+ . ..|..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f 218 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCF 218 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-------CCEEEECCSEEEEEEEECTTCSSEEEEEEE
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-------cccchheeeeeeeEEEecCCCCCCceEEEE
Confidence 21 122223344444433221 0112223333333322 122344555433222222111 1 13333
Q ss_pred eeC---CCcEEEEECCCC---c-ccc----cc-ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461 164 AGE---DAIVRIWDTETG---K-LLK----ES-DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (326)
Q Consensus 164 ~~~---d~~i~~wd~~~~---~-~~~----~~-~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (326)
+.. .+.+++.++... . ... ++ .+...-..-..++..++.-..+..-+.-|.|+++|+.++.++..-.
T Consensus 219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp EECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 333 268888888432 1 010 00 0111112335577777777788888889999999999999887754
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=43.05 E-value=1.3e+02 Score=24.12 Aligned_cols=86 Identities=6% Similarity=-0.043 Sum_probs=42.4
Q ss_pred EecCCcEEEEee-CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC--CeEEEeecCCcceEEEEe
Q 020461 154 WGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD--KSAKLWDARTLELIKTYV 230 (326)
Q Consensus 154 ~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~ 230 (326)
++|+++.|+-.+ ....|..-++..+... .+. .+. . ...+.|++.+|+=...+ ..|..-++...+. ..+.
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~--~~~---~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt 223 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFY--DCN---C-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT 223 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEEE-EEE--CSC---E-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCEE-EEe--CCC---c-cceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe
Confidence 456666665333 3566777776544322 221 111 1 12245777777655433 2455555554432 2222
Q ss_pred eccceEEEEeCCCCCeeEEe
Q 020461 231 TERPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 231 ~~~~~~~~~~s~~~~~~~~~ 250 (326)
...+ ..++|.++.++.+
T Consensus 224 -~~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 224 -EANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp -CSCE--EEEEEETTEEEEE
T ss_pred -CCCc--ceEEECCCEEEEE
Confidence 2222 3477777777654
No 353
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=39.66 E-value=1.5e+02 Score=25.85 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=45.8
Q ss_pred ceeeeecCC-ceeEEEEcc----CCC--EEEeecCCCCeEEEecC-CC------C-eeeeccC--cccceEEEEEcCCCC
Q 020461 3 PILMKGHER-PLTYLKYNK----DGD--LLFSCAKDHTPTVWFAD-NG------E-RLGTYRG--HNGAVWCCDVSRDSM 65 (326)
Q Consensus 3 ~~~~~~h~~-~i~~~~~s~----~~~--~l~s~~~d~~v~iw~~~-~~------~-~~~~~~~--h~~~V~~~~~~~~~~ 65 (326)
|++.+.... ..+.++... +++ .++-|..+|.|.-.-+. .+ . .+.++.- ...+|..+.++++.+
T Consensus 395 Pll~~~~~~~~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~ 474 (495)
T 1q47_A 395 PIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQ 474 (495)
T ss_dssp CSEEESSSSSCEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTT
T ss_pred cEEEecCCccceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCC
Confidence 444443322 356665553 244 46678899988644332 11 1 1222222 346889999999999
Q ss_pred eEEEEeCCCcEEE
Q 020461 66 TLITGSADQTAKL 78 (326)
Q Consensus 66 ~l~s~~~d~~i~~ 78 (326)
+|+.++.++.+||
T Consensus 475 ~Lyv~s~~~V~~v 487 (495)
T 1q47_A 475 QLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEBSSCEEEE
T ss_pred EEEEEECCeEEEE
Confidence 9999999887665
No 354
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=38.41 E-value=2.3e+02 Score=25.83 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=36.1
Q ss_pred cCCcEEEEeeCC----CcEEEEECCCCcccccc-c----cccCcceeeEEEEEcCCCCeEEEEeCCC------eEEEeec
Q 020461 156 PLNRTIISAGED----AIVRIWDTETGKLLKES-D----KETGHKKTITSLAKAADGSHFLTGSLDK------SAKLWDA 220 (326)
Q Consensus 156 ~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~-~----~~~~h~~~v~~v~~s~~~~~l~s~s~dg------~i~iwd~ 220 (326)
..+..++.||.+ ..+.+||..+.+....- . ........-..+.+..++..++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 345677777754 35788898776543211 0 0111111112223322667777777543 4788888
Q ss_pred CCc
Q 020461 221 RTL 223 (326)
Q Consensus 221 ~~~ 223 (326)
.+.
T Consensus 476 ~t~ 478 (695)
T 2zwa_A 476 KTR 478 (695)
T ss_dssp TTT
T ss_pred CCC
Confidence 774
No 355
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=37.21 E-value=26 Score=25.74 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=21.7
Q ss_pred cceeEEEECCCCc-eEEeecCCCcEEEeecCCCc
Q 020461 289 GPINALAFNPDGK-SFSSGGEDGYVRLHHFDPDY 321 (326)
Q Consensus 289 ~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~~~ 321 (326)
+-+.++-|...+. .+++.+.+|++.| |||+|
T Consensus 119 ~hllsl~f~~g~aHaia~S~~g~~~tl--FDPN~ 150 (188)
T 1ukf_A 119 KHLLSLRFANVQGHAIACSCEGSQFKL--FDPNL 150 (188)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTEEEE--EETTT
T ss_pred ceEEEEEecCCCceeEEeccCCCeEEE--eCCCC
Confidence 3466677765443 3677778999999 78876
No 356
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.40 E-value=1.2e+02 Score=27.28 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=36.0
Q ss_pred eEEEEecCCcEEEEeeCC------------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE
Q 020461 150 NRAVWGPLNRTIISAGED------------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209 (326)
Q Consensus 150 ~~~~~~~~~~~l~s~~~d------------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 209 (326)
--+.|+|.|.+++.-..+ ..+.+.+..+++..+-.. .....+++.++|+||++.|...
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~--~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV--GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE--CCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe--CCCCccCcCeeECCCCCEEEEE
Confidence 457899999866653322 234455555665433221 2245789999999998877654
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.09 E-value=2.2e+02 Score=25.49 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=41.1
Q ss_pred eeeEEEEEcCCCCeEEEEeC------------CCeEEEeecCCcceEEEEee--ccceEEEEeCCCCCeeEEec
Q 020461 192 KTITSLAKAADGSHFLTGSL------------DKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 192 ~~v~~v~~s~~~~~l~s~s~------------dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~ 251 (326)
.....|.++++|.+.++... ...+..++..+++..+-+.. ...++.++|+|+++.++++.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34667889999987773221 12566777777776444432 24689999999999988763
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=34.02 E-value=2.8e+02 Score=25.49 Aligned_cols=83 Identities=6% Similarity=-0.036 Sum_probs=47.1
Q ss_pred CCCcEEEEECCCCc-------cccccccccCcceeeEEEEEcCCCCeEEEEeCCCe--EEEeecCCcc-eEEE-Eee--c
Q 020461 166 EDAIVRIWDTETGK-------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS--AKLWDARTLE-LIKT-YVT--E 232 (326)
Q Consensus 166 ~d~~i~~wd~~~~~-------~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~--i~iwd~~~~~-~~~~-~~~--~ 232 (326)
-.+.|...|+.++. ....+. .......+..+.+..+ ..+++...++. |+++|+.+++ .+.. +.. .
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~ 395 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ 395 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCST
T ss_pred CCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCC
Confidence 36678888886542 111111 1123456778888876 46677777765 6777776664 2333 222 2
Q ss_pred cceEEEEeCCCCCeeEEe
Q 020461 233 RPVNAVTMSPLLDHVVLG 250 (326)
Q Consensus 233 ~~~~~~~~s~~~~~~~~~ 250 (326)
..+.....+++++.+++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~ 413 (711)
T 4hvt_A 396 NAIFGMSSYEEEEEALIT 413 (711)
T ss_dssp TCEEEEECCTTCSCEEEE
T ss_pred eEEEEEeecCcCCEEEEE
Confidence 345566666776665543
No 359
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=31.91 E-value=2e+02 Score=23.15 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=32.8
Q ss_pred CCCEEEeecC-CCCeEEEecCC--CCeee--eccCcccceEEEEEcCCCCeEEEEeC-C---------CcEEEEEccCCc
Q 020461 21 DGDLLFSCAK-DHTPTVWFADN--GERLG--TYRGHNGAVWCCDVSRDSMTLITGSA-D---------QTAKLWNVETGA 85 (326)
Q Consensus 21 ~~~~l~s~~~-d~~v~iw~~~~--~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~~~-d---------~~i~~wd~~~~~ 85 (326)
++++++.|+. ...+.++|..+ .+... .+......=.+++. -+++.++.||. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 6666666653 35677888764 43322 22210111111111 25666666665 2 457888887754
No 360
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=28.23 E-value=1e+02 Score=22.25 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=24.9
Q ss_pred eeEEEECCCCceEEeecCCCcEEEeecCC-Cceeee
Q 020461 291 INALAFNPDGKSFSSGGEDGYVRLHHFDP-DYFNIK 325 (326)
Q Consensus 291 v~~v~~s~d~~~lat~s~Dg~i~l~~~~~-~~~~~~ 325 (326)
+.=+.|.|++.+.|.+...|...=.++.. +|.+|+
T Consensus 112 lEp~eF~p~~~w~a~~~esG~f~dvDLse~eW~DYD 147 (164)
T 1zso_A 112 IELIDFFPSNNFIVEDTKGKLYYDVNLSDQNWCDYN 147 (164)
T ss_dssp EEEEEECCCSCEEEEETTSCEEEEECCTTSCEEEEE
T ss_pred eeeEEEecCCcEEEEECCCCcEEeeecCCCceeccc
Confidence 45589999999999997777322255654 677764
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=27.78 E-value=2.9e+02 Score=23.73 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=55.4
Q ss_pred ceeEEEEecCCc-EEEEeeCCCcEEEEECCCCc---ccccccccc------CcceeeEEEEEcCC----CCeEEEEeC--
Q 020461 148 RINRAVWGPLNR-TIISAGEDAIVRIWDTETGK---LLKESDKET------GHKKTITSLAKAAD----GSHFLTGSL-- 211 (326)
Q Consensus 148 ~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~------~h~~~v~~v~~s~~----~~~l~s~s~-- 211 (326)
....++|.|++. .|+.+...|.|++++..... .+..+.... .-+.....|+++|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 346788999985 45555678999999754221 111111111 11345788999986 444443332
Q ss_pred C----------CeEEEeecCC----------cceEEEEee---ccceEEEEeCCCCCeeEEec
Q 020461 212 D----------KSAKLWDART----------LELIKTYVT---ERPVNAVTMSPLLDHVVLGG 251 (326)
Q Consensus 212 d----------g~i~iwd~~~----------~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~ 251 (326)
+ ..|.-|.+.. .+.+..+.. ......+.|.|++...+..|
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1 1233344321 223333321 24567899999985544443
No 362
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=25.83 E-value=61 Score=19.26 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=18.8
Q ss_pred CCceEEeecCCCcEEEeecCCCceee
Q 020461 299 DGKSFSSGGEDGYVRLHHFDPDYFNI 324 (326)
Q Consensus 299 d~~~lat~s~Dg~i~l~~~~~~~~~~ 324 (326)
....|+.-- ||.|+||.|+++.=.+
T Consensus 28 e~nhFgv~e-~g~iKIykyde~tNeI 52 (72)
T 3kvp_A 28 EHNHFGVME-DGYIKIYEYNESRNEV 52 (72)
T ss_dssp STTEEEEEE-TTEEEEEEEETTTTEE
T ss_pred cCCEEEEEe-CCEEEEEEeCCCCCeE
Confidence 355676666 9999999999986444
No 363
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=23.34 E-value=2.2e+02 Score=25.98 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=36.0
Q ss_pred EEEEeeCCCcEEEE-ECCCCcc-ccccccccCcceeeEEEEEcCCC--CeEEEEeCCCeEEE
Q 020461 160 TIISAGEDAIVRIW-DTETGKL-LKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAKL 217 (326)
Q Consensus 160 ~l~s~~~d~~i~~w-d~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~--~~l~s~s~dg~i~i 217 (326)
.++.|..+|.|+-. -...... +.++.. .....+|..+.++++. .+|..++.++.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~-~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQL-FQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEEC-CTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecc-cCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 56678889987533 3332222 111111 2334678889999887 88999998876665
No 364
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=22.86 E-value=1.9e+02 Score=25.72 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=46.6
Q ss_pred CceeeeecCC-ceeEEEEcc----CC--CEEEeecCCCCeEEEecCC-------CC-eeeeccC-----------cccce
Q 020461 2 RPILMKGHER-PLTYLKYNK----DG--DLLFSCAKDHTPTVWFADN-------GE-RLGTYRG-----------HNGAV 55 (326)
Q Consensus 2 ~~~~~~~h~~-~i~~~~~s~----~~--~~l~s~~~d~~v~iw~~~~-------~~-~~~~~~~-----------h~~~V 55 (326)
+|++.+.... ..+.|+... ++ ..++.|..+|.|.-.-... .. .+.++.- ...+|
T Consensus 393 ~Pll~~~~~~y~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI 472 (565)
T 3oky_B 393 RPWFLRTMVRYRLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRI 472 (565)
T ss_dssp SCSEEECSSSSCEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCC
T ss_pred eeEEEEcCCccceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCce
Confidence 4555554433 357777664 23 3577788999885332211 11 1212211 14578
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEE
Q 020461 56 WCCDVSRDSMTLITGSADQTAKL 78 (326)
Q Consensus 56 ~~~~~~~~~~~l~s~~~d~~i~~ 78 (326)
..+.++++.+.|+.++.++.+++
T Consensus 473 ~~L~ls~~~~~LYV~s~~~V~qV 495 (565)
T 3oky_B 473 MGMQLDRASGSLYVAFSTCVIKV 495 (565)
T ss_dssp CEEEEEGGGTEEEEECSSCEEEE
T ss_pred EEEEEcCCCCEEEEEecCeEEEe
Confidence 88999988888999988887776
No 365
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.52 E-value=2.3e+02 Score=25.01 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=42.0
Q ss_pred CceeEEEEccCCC--EEEeecCCCCeEEEecCCCC----eeeecc--CcccceE-EEEEcCCCCeEEEEeCCCcEEE
Q 020461 11 RPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGE----RLGTYR--GHNGAVW-CCDVSRDSMTLITGSADQTAKL 78 (326)
Q Consensus 11 ~~i~~~~~s~~~~--~l~s~~~d~~v~iw~~~~~~----~~~~~~--~h~~~V~-~~~~~~~~~~l~s~~~d~~i~~ 78 (326)
...++++....+. .++.|..+|.|.-..+.... .+.++. ....+|. .+.++++.++|+.++.++.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3466666665444 56778888888755443221 122221 1245775 7888888888888888765554
Done!