BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020462
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLV 60
+T LHLAA G++ IV+ ++ + +D G LH A + ++ V
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 61 RSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-NGYPEL 119
++ D G+TPLH LAA+ V ++ K A+ +A +K + +I + NG +L
Sbjct: 107 NAV----DTWGDTPLH-LAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 120 KEEIQKLS 127
E +QKL+
Sbjct: 162 AEILQKLN 169
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLV 60
+T LHLAA G++ IV+ ++ + +D G LH A + ++ V
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 61 RSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-NGYPEL 119
++ D G+TPLH LAA+ V ++ K A+ +A +K + +I + NG +L
Sbjct: 107 NAV----DTWGDTPLH-LAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 120 KEEIQKLS 127
E +QKL+
Sbjct: 162 AEILQKLN 169
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LH AA G+ IVK +ISK + D+ G LHYA + +V+
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGH----------KEIVK 87
Query: 62 SLIIEG------DVKGNTPLHVLA 79
LI +G D G TPLH A
Sbjct: 88 LLISKGADVNAKDSDGRTPLHYAA 111
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ KN VD+ G L A + ++ +V
Sbjct: 49 TPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFGHL----------EIVE 97
Query: 62 SLIIEG------DVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-N 114
L+ G D++G+TPLH+ A E V ++ K A+ +A +K + +I + N
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEI-VEVLLKNGADVNAQDKFGKTAFDISIDN 156
Query: 115 GYPELKEEIQKLS 127
G +L E +QKL+
Sbjct: 157 GNEDLAEILQKLN 169
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 17/84 (20%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LH AA+ G+ IVK ++SK + D+ G LHYA + + +V+
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKE----------IVK 87
Query: 62 SLIIEG------DVKGNTPLHVLA 79
L+ +G D G TPLH A
Sbjct: 88 LLLSKGADPNAKDSDGRTPLHYAA 111
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 17/84 (20%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LH AA+ G+ +VK +ISK + D+ G LH+A + + +V+
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGH----------KEVVK 87
Query: 62 SLIIEG------DVKGNTPLHVLA 79
LI +G D G TPLH A
Sbjct: 88 LLISKGADVNAKDSDGRTPLHHAA 111
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 19/133 (14%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ KN D+ G LH A ++ +V
Sbjct: 49 TPLHLAAHFGHLEIVEVLL-KNGADVNAKDSLGVTPLHLAARRGHL----------EIVE 97
Query: 62 SLIIEG------DVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-N 114
L+ G D G TPLH LAA R V ++ K A+ +A +K + +I + N
Sbjct: 98 VLLKNGADVNASDSHGFTPLH-LAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156
Query: 115 GYPELKEEIQKLS 127
G +L E +QKL+
Sbjct: 157 GNEDLAEILQKLN 169
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
+T LHLAA RG++ IV+ ++ KN D+ G+ LH A
Sbjct: 81 VTPLHLAARRGHLEIVEVLL-KNGADVNASDSHGFTPLHLA 120
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 19/133 (14%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ + DN G LH A + ++ +V
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHL----------EIVE 97
Query: 62 SLIIEG------DVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-N 114
L+ G D +G TPLH LAA V ++ K A+ +A +K + +I + N
Sbjct: 98 VLLKHGADVNAKDYEGFTPLH-LAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 115 GYPELKEEIQKLS 127
G +L E +QKL+
Sbjct: 157 GNEDLAEILQKLN 169
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 17/84 (20%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA+ G+ +VK ++S+ + D+ G LH A + + +V+
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKE----------VVK 87
Query: 62 SLIIEG------DVKGNTPLHVLA 79
L+ +G D G TPLH+ A
Sbjct: 88 LLLSQGADPNAKDSDGKTPLHLAA 111
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA +G++ IV+ ++ + D G LH A + ++ +V
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHL----------EIVE 97
Query: 62 SLIIEG------DVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-N 114
L+ G D G TPLH+ A E V ++ K A+ +A +K + +I + N
Sbjct: 98 VLLKNGADVNATDTYGFTPLHLAADAGHLEI-VEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 115 GYPELKEEIQKLS 127
G +L E +QKL+
Sbjct: 157 GNEDLAEILQKLN 169
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ KN D G LH A + ++ +V
Sbjct: 49 TPLHLAASNGHLEIVEVLL-KNGADVNASDLTGITPLHLAAATGHL----------EIVE 97
Query: 62 SLIIEG------DVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-N 114
L+ G D G+TPLH+ A E V ++ K A+ +A +K + +I + N
Sbjct: 98 VLLKHGADVNAYDNDGHTPLHLAAKYGHLEI-VEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 115 GYPELKEEIQ 124
G +L E +Q
Sbjct: 157 GNEDLAEILQ 166
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ + + D G+ LH A ++ V
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 62 SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-NGYPELK 120
++ D G TPLH+ A E V ++ K A+ +A +K + +I + NG +L
Sbjct: 108 AM----DSDGMTPLHLAAKWGYLEI-VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 121 EEIQKLS 127
E +QKL+
Sbjct: 163 EILQKLN 169
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
+T LHLAADRG++ +V+ ++ KN D+ G+ LH A
Sbjct: 81 VTPLHLAADRGHLEVVEVLL-KNGADVNANDHNGFTPLHLA 120
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ KN D+ G LH A ++ V
Sbjct: 49 TPLHLAAYFGHLEIVEVLL-KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 62 SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-NGYPELK 120
+ D G TPLH+ A + E V ++ K A+ +A +K + +I + NG +L
Sbjct: 108 A----NDHNGFTPLHLAANIGHLEI-VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 121 EEIQKLS 127
E +QKL+
Sbjct: 163 EILQKLN 169
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLV 60
+T LHLAA G++ IV+ ++ + + D G+ LH A ++ ++ V
Sbjct: 48 LTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 61 RSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNK 103
+ D+ G+TPLH+ A E V ++ K A+ +A +K
Sbjct: 107 NAF----DMTGSTPLHLAADEGHLEI-VEVLLKYGADVNAQDK 144
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ + D G+ LH A ++ +V
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHL----------EIVE 97
Query: 62 SLIIEG------DVKGNTPLHVLAAVRPDEFD-VRMIRKMQANFDAVNKQNVSVTNILL- 113
L+ G D G TPLH+ A R + V ++ K A+ +A +K + +I +
Sbjct: 98 VLLKAGADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISID 155
Query: 114 NGYPELKEEIQ 124
NG +L E +Q
Sbjct: 156 NGNEDLAEILQ 166
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ KN D G LH A ++ +V
Sbjct: 49 TPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAAHFGHL----------EIVE 97
Query: 62 SLIIEG------DVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-N 114
L+ G D G TPLH LAA R V ++ K A+ +A +K + +I + N
Sbjct: 98 VLLKNGADVNAKDDNGITPLH-LAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINN 156
Query: 115 GYPELKEEIQKLS 127
G +L E +QKL+
Sbjct: 157 GNEDLAEILQKLN 169
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLV 60
+T LHLAA G + IV+ ++ KN D+ G LH A ++ +V
Sbjct: 40 LTPLHLAAANGQLEIVEVLL-KNGADVNASDSAGITPLHLAAYDGHL----------EIV 88
Query: 61 RSLIIEG------DVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLN 114
L+ G D G TPLH LAA+ V ++ K A+ +A + ++ +I +N
Sbjct: 89 EVLLKHGADVNAYDRAGWTPLH-LAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISIN 147
Query: 115 -GYPELKEEIQ 124
G +L E +Q
Sbjct: 148 QGQEDLAEILQ 158
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
TALH+AA +GY ++K +I + + D GW LH A
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAA 239
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ + D G+ LH A ++ +V
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHL----------EIVE 85
Query: 62 SLIIEG------DVKGNTPLHVLAAVRPDEFD-VRMIRKMQANFDAVNKQNVSVTNILL- 113
L+ G D G TPLH+ A R + V ++ K A+ +A +K + ++ +
Sbjct: 86 VLLKAGADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAID 143
Query: 114 NGYPELKEEIQKLS 127
NG ++ E +QK +
Sbjct: 144 NGNEDIAEVLQKAA 157
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ + D G+ LH A ++ +V
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHL----------EIVE 85
Query: 62 SLIIEG------DVKGNTPLHVLAAVRPDEFD-VRMIRKMQANFDAVNKQNVSVTNILL- 113
L+ G D G TPLH+ A R + V ++ K A+ +A +K + ++ +
Sbjct: 86 VLLKAGADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIR 143
Query: 114 NGYPELKEEIQKLS 127
G+ ++ E +QK +
Sbjct: 144 EGHEDIAEVLQKAA 157
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ IV+ ++ KN +D G LH A ++ V
Sbjct: 49 TPLHLAARVGHLEIVEVLL-KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN 107
Query: 62 SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-NGYPELK 120
+ D G+TPLH+ A E V ++ K A+ +A +K + +I + NG +L
Sbjct: 108 A----DDTIGSTPLHLAADTGHLEI-VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 121 EEIQ 124
E +Q
Sbjct: 163 EILQ 166
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 40/128 (31%)
Query: 1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLV 60
+T LHLAA RG++ IV+ ++ H A V+
Sbjct: 48 VTPLHLAAKRGHLEIVEVLLK-----------------HGADVNAS-------------- 76
Query: 61 RSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-NGYPEL 119
D+ G TPLH+ A V E V ++ + A+ +A +K + +I + NG +L
Sbjct: 77 -------DIWGRTPLHLAATVGHLEI-VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 120 KEEIQKLS 127
E +QKL+
Sbjct: 129 AEILQKLN 136
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAM 42
T LHLA+ GY+GIV+ ++S + G LH A+
Sbjct: 116 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 156
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 40/128 (31%)
Query: 1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLV 60
+T LHLAA RG++ IV+ ++ H A V+
Sbjct: 48 VTPLHLAAKRGHLEIVEVLLK-----------------HGADVNAR-------------- 76
Query: 61 RSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL-NGYPEL 119
D+ G TPLH+ A V E V ++ + A+ +A +K + +I + NG +L
Sbjct: 77 -------DIWGRTPLHLAATVGHLEI-VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 120 KEEIQKLS 127
E +QKL+
Sbjct: 129 AEILQKLN 136
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAM 42
T LHLA+ GY+GIV+ ++S + G LH A+
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 1 MTALHLAADRGYVGIVKAII 20
+T LHLAADRG++ IV+ ++
Sbjct: 114 LTPLHLAADRGHLEIVEVLL 133
>pdb|1WVT|A Chain A, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
pdb|1WVT|B Chain B, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
pdb|1WVT|C Chain C, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
Length = 172
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 67 GDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKL 126
GD KG T + + V D I K + D +N SV ++ + YPEL E IQKL
Sbjct: 7 GD-KGKTKVPSVGEVWKDS----EIVKALGDLDELN----SVLGVVSSLYPELSEVIQKL 57
Query: 127 SKDV 130
D+
Sbjct: 58 QNDI 61
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 20/110 (18%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
T LHLAA G++ +VK ++ + D G LH A + ++ +V+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLE----------VVK 52
Query: 62 SLIIEG------DVKGNTPLHVLAAVRPDEFD-VRMIRKMQANFDAVNKQ 104
L+ G D G TPLH+ A R + V+++ + A+ +A +K
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHL--AARNGHLEVVKLLLEAGADVNAKDKN 100
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
+ LH+AA G IVKA++ K + V+ G LHYA
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYA 113
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
+ LH+AA G IVKA++ K + V+ G LHYA
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYA 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,194,414
Number of Sequences: 62578
Number of extensions: 293154
Number of successful extensions: 820
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 66
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)