Query 020463
Match_columns 326
No_of_seqs 252 out of 1771
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:34:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02856 fumarylacetoacetase 100.0 2.1E-90 4.6E-95 681.6 27.8 324 3-326 5-329 (424)
2 TIGR01266 fum_ac_acetase fumar 100.0 4.7E-90 1E-94 678.2 26.1 320 5-326 1-321 (415)
3 KOG2843 Fumarylacetoacetase [C 100.0 2.2E-91 4.8E-96 646.2 14.6 321 4-326 1-323 (420)
4 COG0179 MhpD 2-keto-4-pentenoa 100.0 1.8E-34 3.9E-39 271.2 12.2 134 114-274 47-184 (266)
5 TIGR02303 HpaG-C-term 4-hydrox 100.0 1.9E-33 4.1E-38 262.0 12.8 132 110-274 27-164 (245)
6 KOG1535 Predicted fumarylaceto 100.0 4E-28 8.7E-33 216.2 11.2 128 116-274 2-136 (217)
7 PRK15203 4-hydroxyphenylacetat 99.9 9.1E-27 2E-31 232.6 12.4 124 119-274 215-344 (429)
8 PRK10691 hypothetical protein; 99.9 2.4E-26 5.2E-31 211.0 11.9 111 134-272 26-139 (219)
9 PRK15203 4-hydroxyphenylacetat 99.9 1.2E-25 2.7E-30 224.5 11.9 109 134-268 12-123 (429)
10 PRK12764 hypothetical protein; 99.9 1E-23 2.2E-28 214.2 11.9 115 129-274 22-142 (500)
11 PF09298 FAA_hydrolase_N: Fuma 99.9 1E-23 2.2E-28 173.5 6.7 105 18-122 1-107 (107)
12 PF01557 FAA_hydrolase: Fumary 99.9 1.7E-23 3.7E-28 191.0 6.5 126 130-275 5-133 (218)
13 TIGR02305 HpaG-N-term 4-hydrox 99.9 1.4E-22 3.1E-27 184.1 10.5 116 134-274 10-127 (205)
14 COG3970 Fumarylacetoacetate (F 98.5 1.7E-07 3.8E-12 89.0 6.4 83 161-273 171-256 (379)
15 TIGR03220 catechol_dmpE 2-oxop 98.2 4.8E-06 1E-10 78.4 7.1 84 167-273 80-166 (255)
16 PRK11342 mhpD 2-keto-4-penteno 95.8 0.022 4.7E-07 53.9 6.6 49 198-247 100-148 (262)
17 TIGR02312 HpaH 2-oxo-hepta-3-e 95.2 0.046 9.9E-07 51.9 6.2 49 198-247 101-149 (267)
18 COG3802 GguC Uncharacterized p 93.1 0.12 2.6E-06 48.9 4.3 90 151-272 138-229 (333)
19 TIGR03218 catechol_dmpH 4-oxal 73.7 11 0.00023 35.8 6.8 72 198-271 104-178 (263)
20 COG3971 2-keto-4-pentenoate hy 55.0 11 0.00024 35.8 3.0 73 200-274 103-179 (264)
21 PF10370 DUF2437: Domain of un 37.5 40 0.00088 23.7 2.9 26 20-47 1-26 (50)
22 PF08965 DUF1870: Domain of un 31.7 27 0.00059 29.4 1.4 24 220-248 15-38 (118)
23 PF12596 Tnp_P_element_C: 87kD 30.9 9.5 0.00021 31.5 -1.4 14 221-234 74-87 (106)
No 1
>PLN02856 fumarylacetoacetase
Probab=100.00 E-value=2.1e-90 Score=681.63 Aligned_cols=324 Identities=75% Similarity=1.263 Sum_probs=302.9
Q ss_pred cccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhCCchhH
Q 020463 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAW 82 (326)
Q Consensus 3 ~~s~~~~~~~~~f~~~nlp~g~fs~~~~~~~r~Gv~igd~viDL~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~g~~~~ 82 (326)
++|||+++++|||||+||||||||+.+++.+|+||+|||+||||+++.+.++|.+.......+|.+++||+||++|+++|
T Consensus 5 ~~swv~~~~~~~F~i~NlP~Gvfs~~~~~~~r~gvaigd~vldl~~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~ 84 (424)
T PLN02856 5 LKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLLSDSDCFSQPTLNKFMAMGRPAW 84 (424)
T ss_pred ccccccCCCCCCCCccccCeeEEECCCCCCceeEEEeCCEEEeHHHHHhcCCCCcccccccccccCcCHHHHHhCCHHHH
Confidence 68999999999999999999999998777999999999999999999988888653222347999999999999999999
Q ss_pred HHHHHHHHHHHccCchhhhhchhcccccccccCCcEEcCCeeecCcccccccHHHHHHhccccCCCCCCCCCCCCCcCee
Q 020463 83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIA 162 (326)
Q Consensus 83 ~~~r~~l~~ll~~~~~~~~~~~~~~~~~~~p~~~v~l~~Pv~~~~y~d~~~~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~ 162 (326)
+++|+.|+++|++++..++++..+....++|+++|+||+|+.+++|+|||||++|++|+|++||+++++++|||++.|++
T Consensus 85 ~~~R~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~ 164 (424)
T PLN02856 85 KEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIG 164 (424)
T ss_pred HHHHHHHHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCcccccCCCE
Confidence 99999999999877765666666666789999999999999999999999999999999999999888999999999999
Q ss_pred eeCCCCccccCCCceecCCCCccC-CCCCCCCCCCCCCceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccchh
Q 020463 163 YHGRASSVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR 241 (326)
Q Consensus 163 f~k~~ssvvg~g~~I~~P~gq~~~-~~~~~p~~~~s~~lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~SAR 241 (326)
|||++|||+++|++|+||.+|+++ .+...|.|++|+++|||+|||+||||++++|++|++++|++|||||||+||||||
T Consensus 165 y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SAR 244 (424)
T PLN02856 165 YHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSAR 244 (424)
T ss_pred EcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhh
Confidence 999999999999999999999987 5567799999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhCCCCCcccccCCCCcCCccccCcccCCCCCCCCCCCCCCCCccccCCCceeeeEEEEEEeeCCCCCceEEecc
Q 020463 242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS 321 (326)
Q Consensus 242 DiQ~~e~~plg~~~gKsfdtsiGPwiVt~del~~~~~~~~~~~~~~~~yl~~~~~~~~di~l~v~~~~~~~~~~~~i~~s 321 (326)
|+|.|||+|+|||+||||+|+|||||||+|||+||+++.++|+|++||||++++..+|+|+|+|.++.+++.+.++++++
T Consensus 245 DiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~ 324 (424)
T PLN02856 245 DIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRS 324 (424)
T ss_pred hhhhhhcccCCcccccCCCCCCcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988776678999999
Q ss_pred CCCCC
Q 020463 322 NFKYL 326 (326)
Q Consensus 322 n~~~~ 326 (326)
|+++|
T Consensus 325 nt~~M 329 (424)
T PLN02856 325 NFKHL 329 (424)
T ss_pred CHHHc
Confidence 99987
No 2
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=100.00 E-value=4.7e-90 Score=678.25 Aligned_cols=320 Identities=60% Similarity=1.055 Sum_probs=300.0
Q ss_pred cccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCC-CccCCCccCcccHHHHHhCCchhHH
Q 020463 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGP-ILKDSDCFLQPNLNKFLSLGRPAWK 83 (326)
Q Consensus 5 s~~~~~~~~~f~~~nlp~g~fs~~~~~~~r~Gv~igd~viDL~~~~~~~~~~~~-~~~~~~~~~~~~L~~~i~~g~~~~~ 83 (326)
|||+++++|||||+|||||+|++.+++.+|+||+|||+|+||+++.. +|.+. ......+|.+++||+||++|+++|+
T Consensus 1 swv~~~~~~~f~i~nlP~gvf~~~~~~~pR~gv~igd~vlDL~~~~~--~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~~ 78 (415)
T TIGR01266 1 SFVPVAENSDFPIQNLPYGVFSTQANSSPRIGVAIGDQILDLSVIAH--LFTGPALSKHQHVFDQSTLNAFMALGRPAWK 78 (415)
T ss_pred CccCCCCCCCCCccccCeEEEECCCCCCceeEEEECCEEEeHHHHHh--hhcCccccccccccCCCCHHHHHhCCHHHHH
Confidence 89999999999999999999999877789999999999999999875 45432 1122468999999999999999999
Q ss_pred HHHHHHHHHHccCchhhhhchhcccccccccCCcEEcCCeeecCcccccccHHHHHHhccccCCCCCCCCCCCCCcCeee
Q 020463 84 EARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAY 163 (326)
Q Consensus 84 ~~r~~l~~ll~~~~~~~~~~~~~~~~~~~p~~~v~l~~Pv~~~~y~d~~~~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~f 163 (326)
++|+.|+++|+.++..++++..+....++|+++|+||+|+++++|+|||||.+|++|+|++||+++++++|||++.|++|
T Consensus 79 ~~R~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~v~l~lP~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y 158 (415)
T TIGR01266 79 EARARLQNLLSASQARLRDNAALRQRALTPQAEATMHLPAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGY 158 (415)
T ss_pred HHHHHHHHHhhcCCccccccccccccceeehhHceecCCccchhhhhhhchHHHHHHHHhhccCCCCCCCcccccCCcEe
Confidence 99999999998777666666666677899999999999999999999999999999999999998999999999999999
Q ss_pred eCCCCccccCCCceecCCCCccCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccchhhH
Q 020463 164 HGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243 (326)
Q Consensus 164 ~k~~ssvvg~g~~I~~P~gq~~~~~~~~p~~~~s~~lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~SARDi 243 (326)
||++|||+++|++|+||.+|.++.+++.|.|++|+++|||+||||||||++++|++|++++|++|||||||+|||||||+
T Consensus 159 ~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SARDi 238 (415)
T TIGR01266 159 HGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLDMELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSARDI 238 (415)
T ss_pred ccCCceEEcCCCceeCCCccccCCcccCCcccccCceEEEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcchhhh
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhCCCCCcccccCCCCcCCccccCcccCCCCCCCCCCCCCCCCccccCCCceeeeEEEEEEeeCCCCCceEEeccCC
Q 020463 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNF 323 (326)
Q Consensus 244 Q~~e~~plg~~~gKsfdtsiGPwiVt~del~~~~~~~~~~~~~~~~yl~~~~~~~~di~l~v~~~~~~~~~~~~i~~sn~ 323 (326)
|.|||+|||||+||+|+|+|||||||+|||+|||++.++++|++||||++.++..|+|+|+|.++.+++++.++++++|+
T Consensus 239 Q~wE~~plgpf~~KsF~tsigPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~v~vnge~~~~~~~~q~~~~ 318 (415)
T TIGR01266 239 QAWEYVPLGPFLAKSFGTTISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLEVSLKGEGMSEPATICRSNF 318 (415)
T ss_pred hhhhccccCccccccCCCCCcCeEeccccccccccccccccccccccccccCCCcceeEEEEEEecCcCcccceEEcCCH
Confidence 99999999999999999999999999999999999999999999999999998899999999999988888899999999
Q ss_pred CCC
Q 020463 324 KYL 326 (326)
Q Consensus 324 ~~~ 326 (326)
++|
T Consensus 319 ~~M 321 (415)
T TIGR01266 319 KHM 321 (415)
T ss_pred Hhc
Confidence 987
No 3
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-91 Score=646.15 Aligned_cols=321 Identities=57% Similarity=1.005 Sum_probs=310.1
Q ss_pred ccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCCc-cCCCccCcccHHHHHhCCchhH
Q 020463 4 QSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDSDCFLQPNLNKFLSLGRPAW 82 (326)
Q Consensus 4 ~s~~~~~~~~~f~~~nlp~g~fs~~~~~~~r~Gv~igd~viDL~~~~~~~~~~~~~~-~~~~~~~~~~L~~~i~~g~~~~ 82 (326)
+||++++.+|||||+|+|||+|++..+.++++||+|||+|++|+.+.. +|++|-. ..+++|.++|||+||.++.++|
T Consensus 1 ~sf~~v~~~sdfpi~nlpygvfst~~d~~~~igvaIgdqIl~l~~i~~--lf~gp~l~~hQdvf~q~TLN~fMgL~~~AW 78 (420)
T KOG2843|consen 1 KSFVSVPQNSDFPIQNLPYGVFSTKADSSRHIGVAIGDQILNLAEIAN--LFDGPQLKAHQDVFKQSTLNAFMGLDFEAW 78 (420)
T ss_pred CCccccCCCCCCccccccccccccccCCCCcceeehhHHHHHHHHHHH--hhcCcchHHHHHHhhhhhHHHHhCCCHHHH
Confidence 689999999999999999999999998899999999999999998876 6776543 4588999999999999999999
Q ss_pred HHHHHHHHHHHccCchhhhhchhcccccccccCCcEEcCCeeecCcccccccHHHHHHhccccCCCCCCCCCCCCCcCee
Q 020463 83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIA 162 (326)
Q Consensus 83 ~~~r~~l~~ll~~~~~~~~~~~~~~~~~~~p~~~v~l~~Pv~~~~y~d~~~~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~ 162 (326)
.++|..+|++|+.+.+.++++.+++..+.++.++++||+|.+++||+|||++++||+|+|.|||++++++.|||.+.||+
T Consensus 79 ~eaR~~~Q~LLs~~~a~Lrdn~~Lr~~a~v~Qs~atmHLPAqIGDYTDFYSSihHATNVGIMFRgkeNALMPNW~hLPVG 158 (420)
T KOG2843|consen 79 DEARSQTQKLLSKGCAELRDNVDLRAVAIVPQSEATMHLPAQIGDYTDFYSSIHHATNVGIMFRGKENALMPNWRHLPVG 158 (420)
T ss_pred HHHHHHHHHHhhcchhhhccccceeeeeeeccccceeccchhhcchhhhhhhhhhccceeEEEeccccccCCcccccccc
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCccccCCCceecCCCCccCCCCCCCCCCCCCCceeceEEEEEEc-CCCCCCCcCCHhhHhhceeeeeeecccchh
Q 020463 163 YHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVG-PGNELGKPIDVNEAADHIFGVMLMNDWSAR 241 (326)
Q Consensus 163 f~k~~ssvvg~g~~I~~P~gq~~~~~~~~p~~~~s~~lD~E~ELavVIG-k~~~~g~~i~~eeA~d~IfGytl~ND~SAR 241 (326)
||||+||||.+|++|+||-||.+|.+++.|+|++|+.||+|+|||++|| ++|.+|++|+.++|+++|||++++||||||
T Consensus 159 YHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMNDWSAR 238 (420)
T KOG2843|consen 159 YHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMNDWSAR 238 (420)
T ss_pred ccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEecccchh
Confidence 9999999999999999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred hHHhhhhCCCCCcccccCCCCcCCccccCcccCCCCCCCCCCCCCCCCccccCCCceeeeEEEEEEeeCCCCCceEEecc
Q 020463 242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS 321 (326)
Q Consensus 242 DiQ~~e~~plg~~~gKsfdtsiGPwiVt~del~~~~~~~~~~~~~~~~yl~~~~~~~~di~l~v~~~~~~~~~~~~i~~s 321 (326)
|||+|||+|||||++|||.|+++||+|+.++|.||-++.|+|||+++|||++..+.+|||+|+|.|+++++.+..+||+|
T Consensus 239 DIQkWEYVPLGPFlaKsfgTTvSPWVVp~~AL~Pf~v~Np~QdP~plpYL~hd~PftfDINL~Vslkpeg~~~~a~icKs 318 (420)
T KOG2843|consen 239 DIQKWEYVPLGPFLAKSFGTTVSPWVVPTAALKPFVVDNPPQDPEPLPYLRHDIPFTFDINLEVSLKPEGQNEDALICKS 318 (420)
T ss_pred hcccceeecccchhhhhcccccccceeeHhhcCccccCCCCCCCCCCcccccCCCceeeeeeEEEeccCCccccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred CCCCC
Q 020463 322 NFKYL 326 (326)
Q Consensus 322 n~~~~ 326 (326)
|||||
T Consensus 319 NFKhl 323 (420)
T KOG2843|consen 319 NFKHL 323 (420)
T ss_pred cchhh
Confidence 99997
No 4
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-34 Score=271.15 Aligned_cols=134 Identities=31% Similarity=0.400 Sum_probs=115.3
Q ss_pred cCCcEEcCCeeecC--cccccccHHHHHHhccccCCCCCCCCCCCCCcCeeeeCCCCccccCCCceecCCCCccCCCCCC
Q 020463 114 MGKVEMLLPMEIGD--YTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSP 191 (326)
Q Consensus 114 ~~~v~l~~Pv~~~~--y~d~~~~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~f~k~~ssvvg~g~~I~~P~gq~~~~~~~~ 191 (326)
+.++++.+|+..+. |.++.+|.+|++|+|..+ +.| ..|++|.|+++++++++++|.+|.+
T Consensus 47 ~~~~~~~~~~~~~~ki~cvG~NY~~Ha~E~~~~~---~~p------~~P~~F~K~~~a~~~~~~~i~~P~~--------- 108 (266)
T COG0179 47 LAEVRLLAPLPPPGKIVCVGRNYADHAEEMGKDR---DIP------EEPVFFLKPPTAVIGPNDPIPLPPG--------- 108 (266)
T ss_pred ccccccccCCCCCCcEEEEechHHHHHHHhccCC---CCC------CCCeeeccCcccccCCCCceECCCC---------
Confidence 66788888887542 333444999999999752 222 4578999999999999999999986
Q ss_pred CCCCCCCCceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccchhhHHhhhhCCCCCcccccCCCC--cCCcccc
Q 020463 192 PPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVT 269 (326)
Q Consensus 192 p~~~~s~~lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e~~plg~~~gKsfdts--iGPwiVt 269 (326)
++++|||+||||||||+ |++|++++|++||+|||++||||+||+|.+++ ..+|++||+|||+ +||||||
T Consensus 109 -----s~~~dyE~ELavvIGk~---~~~v~~e~A~d~I~GYti~nD~T~Rd~Q~~~~-~~~w~~aK~~d~~~Pigp~iv~ 179 (266)
T COG0179 109 -----SKGLDYEGELAVVIGKR---GKDVSVEDALDYIAGYTIGNDVTARDLQMEEK-GRPWTRAKGFDTFAPVGPWIVT 179 (266)
T ss_pred -----CCCcceeEEEEEEECCc---CCCCCHHHHHhhheEEeeeeecchhcchhhhh-cCCcccccccCCCCCceeEEec
Confidence 89999999999999999 99999999999999999999999999997644 3479999999996 9999999
Q ss_pred CcccC
Q 020463 270 LDALE 274 (326)
Q Consensus 270 ~del~ 274 (326)
.+++.
T Consensus 180 ~~e~~ 184 (266)
T COG0179 180 KDEIS 184 (266)
T ss_pred cccCC
Confidence 99884
No 5
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=1.9e-33 Score=261.97 Aligned_cols=132 Identities=27% Similarity=0.441 Sum_probs=117.4
Q ss_pred cccccCCcEEcCCeeecCcccccc----cHHHHHHhccccCCCCCCCCCCCCCcCeeeeCCCCccccCCCceecCCCCcc
Q 020463 110 SLVPMGKVEMLLPMEIGDYTDFFS----SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFA 185 (326)
Q Consensus 110 ~~~p~~~v~l~~Pv~~~~y~d~~~----~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~f~k~~ssvvg~g~~I~~P~gq~~ 185 (326)
..++++++++++|+.++ +++| |.+|++|+|.. .| ..|++|.|+++|++++|++|.+|..
T Consensus 27 ~~~~~~~v~ll~P~~p~---ki~~vg~Ny~~h~~e~~~~--------~p---~~P~~F~Kp~~s~~g~~~~i~~P~~--- 89 (245)
T TIGR02303 27 RALPPEQVTWLPPFEPG---TIFALGLNYADHASELGFS--------PP---EEPLVFLKGNNTLTGHKGVTYRPKD--- 89 (245)
T ss_pred CccccccceEcCCCCCC---eEEEEeCCHHHHHHHhCCC--------CC---CCCEEEEcCcceeeCCCCcEECCCC---
Confidence 35789999999999743 6666 99999998742 12 4689999999999999999999976
Q ss_pred CCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccchhhHHhhhhCCCCCcccccCCCC--c
Q 020463 186 PSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--L 263 (326)
Q Consensus 186 ~~~~~~p~~~~s~~lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e~~plg~~~gKsfdts--i 263 (326)
+..+|||+||||||||. |++|++++|++||+|||++||||+||+|+.++ .+|.++|+|||+ +
T Consensus 90 -----------~~~ld~E~EL~vvigk~---~~~v~~~~A~~~I~Gytv~nD~T~Rd~q~~~~--~~~~~aK~~D~~~pl 153 (245)
T TIGR02303 90 -----------VRFMHYECELAVVVGKT---AKNVKREDAMDYVLGYTIANDYAIRDYLENYY--RPNLRVKNRDTFTPI 153 (245)
T ss_pred -----------CCceeEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEeecchHHHHhhhc--CCcccccCCCCCEee
Confidence 78999999999999999 99999999999999999999999999998655 369999999997 9
Q ss_pred CCccccCcccC
Q 020463 264 SPWIVTLDALE 274 (326)
Q Consensus 264 GPwiVt~del~ 274 (326)
|||++|.+++.
T Consensus 154 Gp~i~t~~~~~ 164 (245)
T TIGR02303 154 GPWIVDKEDVE 164 (245)
T ss_pred CCcCCCHHHcC
Confidence 99999999884
No 6
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Probab=99.95 E-value=4e-28 Score=216.17 Aligned_cols=128 Identities=33% Similarity=0.408 Sum_probs=112.5
Q ss_pred CcEEcCCeeecCcccccc----cHHHHHHhccccCCCCCCCCCCCCCcCeeeeCCCCccccCCCceecCCCCccCCCCCC
Q 020463 116 KVEMLLPMEIGDYTDFFS----SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSP 191 (326)
Q Consensus 116 ~v~l~~Pv~~~~y~d~~~----~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~f~k~~ssvvg~g~~I~~P~gq~~~~~~~~ 191 (326)
++.++.|+..+ ++++| |.+|+.|.+.. .| ++|++|.|+.||++++|++|..|.+
T Consensus 2 ~~~~~~~~~~~--~KIVcVg~NY~dh~~E~~~~-------~P----keP~~FlKptss~v~~g~~i~~p~~--------- 59 (217)
T KOG1535|consen 2 DVMLLRPLKWP--TKIVCVGRNYADHCKELNNP-------VP----KEPFFFLKPTSSIVGPGGPIVIPPG--------- 59 (217)
T ss_pred ccchhhhhhcC--CeEEEecccHHHHHHHhCCC-------CC----CCCeEEeecchhhcCCCCceEcCCC---------
Confidence 44566777766 57777 99999998742 22 6899999999999999999999987
Q ss_pred CCCCCCCCceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccchhhHHhhhhC-CCCCcccccCCCC--cCCccc
Q 020463 192 PPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIV 268 (326)
Q Consensus 192 p~~~~s~~lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e~~-plg~~~gKsfdts--iGPwiV 268 (326)
++.+|||+|||+||||. |++|++.+|++||+||++..|+||||+|...+. +++|+.||+|||| +| -+|
T Consensus 60 -----~~~lh~EvEL~vVigK~---~~~v~~~~amd~v~Gy~valDmtARd~q~~ak~~g~pw~l~K~~Dtf~Pis-~~v 130 (217)
T KOG1535|consen 60 -----SKGLHHEVELAVVIGKK---GSSVKKKDAMDYVGGYAVALDMTARDWQDEAKKKGLPWTLGKGFDTFTPIS-AIV 130 (217)
T ss_pred -----cCccceeEEEEEEeccc---cccCChhhcccccccEEEEeeccchhhhhhhhhcCCCeeeccccCccCccc-ccc
Confidence 89999999999999999 999999999999999999999999999987543 5889999999997 99 588
Q ss_pred cCcccC
Q 020463 269 TLDALE 274 (326)
Q Consensus 269 t~del~ 274 (326)
+.+.+.
T Consensus 131 pk~~v~ 136 (217)
T KOG1535|consen 131 PKEKVP 136 (217)
T ss_pred cHHHCC
Confidence 888774
No 7
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=99.94 E-value=9.1e-27 Score=232.60 Aligned_cols=124 Identities=21% Similarity=0.297 Sum_probs=108.3
Q ss_pred EcCCeeecCcccccc----cHHHHHHhccccCCCCCCCCCCCCCcCeeeeCCCCccccCCCceecCCCCccCCCCCCCCC
Q 020463 119 MLLPMEIGDYTDFFS----SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPF 194 (326)
Q Consensus 119 l~~Pv~~~~y~d~~~----~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~f~k~~ssvvg~g~~I~~P~gq~~~~~~~~p~~ 194 (326)
++.|+..+ .+++| |.+|++|+|.. .| ..|++|.|+++|+++++++|.+|.+
T Consensus 215 ~~~p~~~~--~ki~~vg~Ny~~h~~e~~~~--------~p---~~P~~F~K~~~s~~g~~~~i~~P~~------------ 269 (429)
T PRK15203 215 FPTPPHPH--GTLFALGLNYADHASELEFK--------PP---EEPLVFLKAPNTLTGDNQTSVRPNN------------ 269 (429)
T ss_pred cccCCCCC--CeEEEEcCCHHHHHHHhCCC--------CC---CCCEEEEcCcceeeCCCCCEECCCC------------
Confidence 55666654 56776 99999998742 12 4689999999999999999999976
Q ss_pred CCCCCceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccchhhHHhhhhCCCCCcccccCCCC--cCCccccCcc
Q 020463 195 GPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDA 272 (326)
Q Consensus 195 ~~s~~lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e~~plg~~~gKsfdts--iGPwiVt~de 272 (326)
+.++|||+||||||||. +++|+++||++||+|||++||+|+||+|+..+ ..|+.+|+|||+ +|||+||.|+
T Consensus 270 --~~~ld~E~ELavVigk~---~~~v~~~ea~~~V~Gy~~~nD~t~rd~q~~~~--~~w~~~K~~d~~~plGp~~v~~d~ 342 (429)
T PRK15203 270 --IEYMHYEAELVVVIGKQ---ARKVSEADAMDYVAGYTVCNDYAIRDYLENYY--RPNLRVKSRDGLTPILSTIVPKEA 342 (429)
T ss_pred --CCceEEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEEeccchhhhhhhc--CCceEeccCCCCcCCCCCEeChhh
Confidence 78999999999999999 99999999999999999999999999997654 358999999996 9999999987
Q ss_pred cC
Q 020463 273 LE 274 (326)
Q Consensus 273 l~ 274 (326)
+.
T Consensus 343 ~~ 344 (429)
T PRK15203 343 IP 344 (429)
T ss_pred cC
Confidence 74
No 8
>PRK10691 hypothetical protein; Provisional
Probab=99.94 E-value=2.4e-26 Score=211.05 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=98.0
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCcCeeeeCCCCccccCCCceecCCCCccCCCCCCCCCCCCCCceeceEEEEEEcCC
Q 020463 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 213 (326)
Q Consensus 134 ~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~f~k~~ssvvg~g~~I~~P~gq~~~~~~~~p~~~~s~~lD~E~ELavVIGk~ 213 (326)
|++|++|++.. .| ..|++|.|+++++++++++|.+|.+ +.++|||+||||||||.
T Consensus 26 y~~h~~e~~~~--------~p---~~P~~F~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvigk~ 80 (219)
T PRK10691 26 YAKHIKEMGSA--------TP---EEPVLFIKPETALCDLRQPLAIPKD--------------FGSVHHEVELAVLIGAT 80 (219)
T ss_pred HHHHHHHhCCC--------CC---CCCEEEECCcceeeCCCCcEECCCC--------------CCCeeEEEEEEEEECCC
Confidence 89999998742 12 3589999999999999999999976 78899999999999999
Q ss_pred CCCCCcCCHhhHhhceeeeeeecccchhhHHhhhhCC-CCCcccccCCCC--cCCccccCcc
Q 020463 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVP-LGPFLGKSFGTT--LSPWIVTLDA 272 (326)
Q Consensus 214 ~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e~~p-lg~~~gKsfdts--iGPwiVt~de 272 (326)
+++++.++|++||+|||++||||+||+|.+.... ++|.++|+||++ +|||+++.+.
T Consensus 81 ---~~~v~~~~a~~~V~gyt~~nDvt~r~~q~~~~~~~~~~~~~K~~D~~~~~gp~i~~~~~ 139 (219)
T PRK10691 81 ---LRQATEEHVRKAIAGYGVALDLTLRDLQGKMKKAGQPWEKAKAFDNSCPISGFIPVAEF 139 (219)
T ss_pred ---CCCCCHHHHhhhheEEEEEEEeEhhhhhhhhccccCCccccccCCCCcCcCCcEEchhc
Confidence 9999999999999999999999999999875432 468899999996 8999987544
No 9
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=99.93 E-value=1.2e-25 Score=224.51 Aligned_cols=109 Identities=20% Similarity=0.243 Sum_probs=93.0
Q ss_pred cHHHHHHhccccCC-CCCCCCCCCCCcCeeeeCCCCccccCCCceecCCCCccCCCCCCCCCCCCCCceeceEEEEEEcC
Q 020463 134 SMHHAKNCGTIFRG-PANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGP 212 (326)
Q Consensus 134 ~~~Ha~e~g~~~~~-~~~p~~p~~~~~Pv~f~k~~ssvvg~g~~I~~P~gq~~~~~~~~p~~~~s~~lD~E~ELavVIGk 212 (326)
|++|+.|+++.+.. +.+. .| ..|++|+|+++|++++|++|.+|.+ + ++|||+||++||||
T Consensus 12 y~~~~~~~~~~~~~~~~~~-~p---~~P~~F~Kp~~al~g~~~~i~~P~~--------------~-~~~~E~EL~vvIGk 72 (429)
T PRK15203 12 HRSQLDAWQEAFQQSPYKA-PP---KTAVWFIKPRNTVIRCGEPIPFPQG--------------E-KVLSGATVALIVGK 72 (429)
T ss_pred hHHHHHhhhhhccccccCC-CC---CCCEEEecCcceeeCCCCcEECCCC--------------C-CceEEEEEEEEECC
Confidence 89999988754211 1112 12 5799999999999999999999964 3 69999999999999
Q ss_pred CCCCCCcCCHhhHhhceeeeeeecccchhhHHhhhhCCCCCcccccCCCC--cCCccc
Q 020463 213 GNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIV 268 (326)
Q Consensus 213 ~~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e~~plg~~~gKsfdts--iGPwiV 268 (326)
+ |++|++++|++||+|||++||+|+||+|.. ..|.++|+|||+ +||||+
T Consensus 73 ~---~~~v~~~~A~~~V~Gyti~nD~t~rd~q~~----~~~~~~K~~D~~~p~Gp~i~ 123 (429)
T PRK15203 73 T---ATKVREEDAAEYIAGYALANDVSLPEESFY----RPAIKAKCRDGFCPIGETVA 123 (429)
T ss_pred c---cCCCCHHHHhhheeEEEEEEEeechhhccc----CCcccccCCCCCcccCCeEE
Confidence 9 999999999999999999999999999862 358999999996 999985
No 10
>PRK12764 hypothetical protein; Provisional
Probab=99.90 E-value=1e-23 Score=214.24 Aligned_cols=115 Identities=22% Similarity=0.312 Sum_probs=102.1
Q ss_pred ccccc----cHHHHHHhccccCCCCCCCCCCCCCcCeeeeCCCCccccCCCceecCCCCccCCCCCCCCCCCCCCceece
Q 020463 129 TDFFS----SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFEL 204 (326)
Q Consensus 129 ~d~~~----~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~f~k~~ssvvg~g~~I~~P~gq~~~~~~~~p~~~~s~~lD~E~ 204 (326)
.+++| |.+|+.|++.. | ..|++|+|++++++++|++|.+|.+ +..+|||+
T Consensus 22 ~kIi~vg~Ny~~ha~e~~~~------p------~~P~~f~K~~~sl~~~g~~I~~p~~--------------~~~l~~E~ 75 (500)
T PRK12764 22 GKVIAVHLNYPSRAAQRGRT------P------AQPSYFLKPSSSLALSGGTVERPAG--------------TELLAFEG 75 (500)
T ss_pred CcEEEECCCCHHHHHHhCCC------C------CCCEEEEeccceEeCCCCeEECCCC--------------CCceeEEE
Confidence 36666 89999997631 1 4689999999999999999999976 77899999
Q ss_pred EEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccchhhHHhhhhCCCCCcccccCCCC--cCCccccCcccC
Q 020463 205 EMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALE 274 (326)
Q Consensus 205 ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e~~plg~~~gKsfdts--iGPwiVt~del~ 274 (326)
||||||||. +++|+.+||++||+|||++||+|+||+|..++ ..|+++|+|||+ +|||++|.++++
T Consensus 76 ELavVIgr~---~~~v~~eea~~~I~Gyt~~nDvt~rD~~~~d~--~~~~~~K~~Dg~~plGp~iv~~~~~d 142 (500)
T PRK12764 76 EIALVIGRP---ARRVSPEDAWSHVAAVTAANDLGVYDLRYADK--GSNLRSKGGDGFTPIGPALISARGVD 142 (500)
T ss_pred EEEEEECCc---CCCCCHHHHHhhheEEEEecceeeehhhhhhc--CCcccccccCccEecCCCccCccccC
Confidence 999999999 99999999999999999999999999998664 247899999996 999999998884
No 11
>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the N-terminal domain of fumarylacetoacetase.; GO: 0004334 fumarylacetoacetase activity, 0009072 aromatic amino acid family metabolic process; PDB: 1QCN_B 1QCO_B 2HZY_A 1QQJ_B 1HYO_A.
Probab=99.89 E-value=1e-23 Score=173.49 Aligned_cols=105 Identities=50% Similarity=0.870 Sum_probs=82.8
Q ss_pred CCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCC--ccCCCccCcccHHHHHhCCchhHHHHHHHHHHHHcc
Q 020463 18 QNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI--LKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSS 95 (326)
Q Consensus 18 ~nlp~g~fs~~~~~~~r~Gv~igd~viDL~~~~~~~~~~~~~--~~~~~~~~~~~L~~~i~~g~~~~~~~r~~l~~ll~~ 95 (326)
|||||||||+..++.+|+||+|||+||||+++...|+|+++. .....+|.+++||+||++|+++|.++|+.|++++++
T Consensus 1 qNLPfGVFst~~~~~pR~gvaIGd~VlDL~al~~~g~~~~~~~~~~~~~~f~~~tLN~fmalg~~~w~avR~~L~~lL~~ 80 (107)
T PF09298_consen 1 QNLPFGVFSTPDDPSPRVGVAIGDQVLDLSALAAAGLFDGPSLSPAAASAFAQPTLNDFMALGRPAWRAVRARLQELLSA 80 (107)
T ss_dssp TT--EEEEEESSEESEEEEEEETTEEEEHHHH--GGG--STTTTTG-GGGGGSSSSHHHHHC-HHHHHHHHHHHHHHHBT
T ss_pred CCCCcEEEecCCCCCCeeEEEECCEEEehHHHhhhcccCcccchhhhHhHhcCCCHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 799999999777789999999999999999998888887532 134789999999999999999999999999999985
Q ss_pred CchhhhhchhcccccccccCCcEEcCC
Q 020463 96 NEATLRDNANLRQKSLVPMGKVEMLLP 122 (326)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~~~v~l~~P 122 (326)
+.+..+++....+..++|+++|+||+|
T Consensus 81 ~~~~~~~~~~~~~~~L~~~~~v~mhLP 107 (107)
T PF09298_consen 81 DNSELSDNQALVEPALVPQAEVTMHLP 107 (107)
T ss_dssp TSCHHHT-HHHHHHHEEEGGGEEEE-S
T ss_pred cCccccchHHHHHHhcccHHHhhcCCC
Confidence 555455556677888999999999998
No 12
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=99.88 E-value=1.7e-23 Score=191.00 Aligned_cols=126 Identities=34% Similarity=0.386 Sum_probs=106.0
Q ss_pred cccccHHHHHHhccccCCCCCCCCCCCCCcCeeeeCCCCccccCCCceecCCCCccCCCCCCCCCCCCCCceeceEEEEE
Q 020463 130 DFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAV 209 (326)
Q Consensus 130 d~~~~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~f~k~~ssvvg~g~~I~~P~gq~~~~~~~~p~~~~s~~lD~E~ELavV 209 (326)
..++|.+|++|++... .+.|. -.+...|++|.|++++++++|++|.+|.. +..+|||+||++|
T Consensus 5 ~~~n~~~~~~~~~~~~--~~~p~-~~~~~~p~~~~~~~~~~~~~g~~i~~p~~--------------~~~~~~E~Ela~v 67 (218)
T PF01557_consen 5 VGLNYTSHAEEAGAGD--VDEPD-YGVPVEPVFFMKPPSSLVGSGAPIPLPRG--------------SRRLDYEAELAFV 67 (218)
T ss_dssp EESEBHHHHHHTTTTC--SSTTS-EECECSGEEEEEEGGGEEETTSEEEECTT--------------SSSEEEEEEEEEE
T ss_pred EeEchHHHHHHhCcCC--CCCCc-cccccCCeEEecCCceeecCCCceecCcc--------------ccccCcceEEEEE
Confidence 4566899999987541 11110 02235688999999999999999999986 7899999999999
Q ss_pred EcCCCCCCCcC-CHhhHhhceeeeeeecccchhhHHhhhhCCCCCcccccCCCC--cCCccccCcccCC
Q 020463 210 VGPGNELGKPI-DVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEP 275 (326)
Q Consensus 210 IGk~~~~g~~i-~~eeA~d~IfGytl~ND~SARDiQ~~e~~plg~~~gKsfdts--iGPwiVt~del~~ 275 (326)
|||+ ++++ +++||++||+||+++||||+||+|.+.+.+++|+.+|+|+++ +|||+|+.+++.+
T Consensus 68 ig~~---~~~~~~~~ea~~~i~g~~~~~d~~~r~~~~~~~~~~~~~~~k~~~~~~~~Gp~~v~~~~~~~ 133 (218)
T PF01557_consen 68 IGRP---LRNVYTPEEALDAIAGYTPANDVTARDLQWRERPGLPWIADKSFDGSLVLGPWVVPPDELPD 133 (218)
T ss_dssp ESS----BSSTH-HHHHGGGEEEEEEEEEEEEHHHHHHHHHTHSSHHHHSSTTCEEEEEEEEEHSSHSG
T ss_pred EecC---CCCCCCHHHHHHHhhEEeeecccchhhhhhhhhcccchhhccCcCcceeecccccccccccC
Confidence 9998 8888 999999999999999999999999988866789999999996 9999999999965
No 13
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=99.88 E-value=1.4e-22 Score=184.06 Aligned_cols=116 Identities=23% Similarity=0.261 Sum_probs=96.8
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCcCeeeeCCCCccccCCCceecCCCCccCCCCCCCCCCCCCCceeceEEEEEEcCC
Q 020463 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 213 (326)
Q Consensus 134 ~~~Ha~e~g~~~~~~~~p~~p~~~~~Pv~f~k~~ssvvg~g~~I~~P~gq~~~~~~~~p~~~~s~~lD~E~ELavVIGk~ 213 (326)
|.+|++|++..+........| ..|++|.|++++++++|++|.+|.. +.+++||+|||+||||.
T Consensus 10 y~~h~~~~~~~~~~~~~~~~p---~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~~~~~E~ELa~vigr~ 72 (205)
T TIGR02305 10 YREQLDRLQEAFQQAPYKAPP---KTPVLYIKPRNTHNGCGQPIPLPAG--------------VEKLRSGATLALVVGRT 72 (205)
T ss_pred HHHHHHHhcccccccccCCCC---CCCEEEEcCcceEeCCCCeEECCCC--------------CCCccEEEEEEEEECCC
Confidence 899999998532211111122 4699999999999999999999875 67899999999999999
Q ss_pred CCCCCcCCHhhHhhceeeeeeecccchhhHHhhhhCCCCCcccccCCCC--cCCccccCcccC
Q 020463 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALE 274 (326)
Q Consensus 214 ~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e~~plg~~~gKsfdts--iGPwiVt~del~ 274 (326)
++++++++|++||+||+++||+|+||.|.+. .|..+|+||++ +||| +|.+++.
T Consensus 73 ---~~~~~~~~a~~~v~g~~~~~dit~~~~~~~~----~~~~~k~~dg~~~lGp~-v~~~~~~ 127 (205)
T TIGR02305 73 ---ACRVREEEALDYVAGYALVNDVSLPEDSYYR----PAIKAKCRDGFCPIGPE-VPLSAIG 127 (205)
T ss_pred ---CCCCCHHHHHHhhheeEEeeeeehhhhhccC----cchhhcccCCccccCCc-ccHHHcC
Confidence 8899999999999999999999999976532 47899999996 9999 7877663
No 14
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=98.51 E-value=1.7e-07 Score=89.05 Aligned_cols=83 Identities=31% Similarity=0.356 Sum_probs=67.4
Q ss_pred eeeeCCCCccccCCCce-ecCCCCccCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccc
Q 020463 161 IAYHGRASSVVISGTDI-VRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWS 239 (326)
Q Consensus 161 v~f~k~~ssvvg~g~~I-~~P~gq~~~~~~~~p~~~~s~~lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~S 239 (326)
+|+...+.+-||+|+.| ++|. |..-..|.|+++++-.. |+ |-||||+||++
T Consensus 171 IFtKaqpmssVG~Ga~Igv~~~---------------S~WnnPEPEvvl~~dS~---G~----------I~GaTlgnDVn 222 (379)
T COG3970 171 IFTKAQPMSSVGHGAQIGVRPD---------------SEWNNPEPEVVLAVDSS---GK----------IVGATLGNDVN 222 (379)
T ss_pred heecCCccccccccceeeeccc---------------cccCCCCCeEEEEEcCC---Cc----------EEeeeecCccc
Confidence 55666688999999999 5553 78889999999999877 87 99999999999
Q ss_pred hhhHHhhhhCCCCCcccccCCCC--cCCccccCccc
Q 020463 240 ARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDAL 273 (326)
Q Consensus 240 ARDiQ~~e~~plg~~~gKsfdts--iGPwiVt~del 273 (326)
+||+..+. +|---++|....+ |||+|++-||.
T Consensus 223 lRD~Egrs--aLlL~kaKdnnasCaiGPfIrlfDe~ 256 (379)
T COG3970 223 LRDFEGRS--ALLLSKAKDNNASCAIGPFIRLFDET 256 (379)
T ss_pred cccccccc--chhcccccccCccccccceEEeecCC
Confidence 99998764 3333455655554 99999999987
No 15
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=98.15 E-value=4.8e-06 Score=78.36 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=60.6
Q ss_pred CCccccCCCceecCCCCccCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCcCCHhhH---hhceeeeeeecccchhhH
Q 020463 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEA---ADHIFGVMLMNDWSARDI 243 (326)
Q Consensus 167 ~ssvvg~g~~I~~P~gq~~~~~~~~p~~~~s~~lD~E~ELavVIGk~~~~g~~i~~eeA---~d~IfGytl~ND~SARDi 243 (326)
.+.+..+|.+|.++.. .+.++|+||||||||..+ +++++.+|+ -++|+++.-+||.+.||+
T Consensus 80 ~~~~~~~g~~i~~~~~---------------~~~~vE~Elafvlg~~l~-~~~~t~~ev~~ai~~v~~~~El~D~r~~~~ 143 (255)
T TIGR03220 80 DGMVYNEGEPIPTDTL---------------IQPKAEGEIAFVLKKDLM-GPGVTAADVLAATECVMPCFEIVDSRIRDW 143 (255)
T ss_pred ccccccCCCeeccccC---------------ccceeeeEEEEEECCCCC-CCCCCHHHHHHHHhheeeeEEEcccccccC
Confidence 4556667888877643 479999999999999843 468999965 478999999999999999
Q ss_pred HhhhhCCCCCcccccCCCCcCCccccCccc
Q 020463 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDAL 273 (326)
Q Consensus 244 Q~~e~~plg~~~gKsfdtsiGPwiVt~del 273 (326)
|.. ..+..+|+ ++-| ++|+.+++
T Consensus 144 ~~~----~~~~~Ad~--~~~~-~~V~g~~~ 166 (255)
T TIGR03220 144 KIK----IQDTVADN--ASCG-VFVLGDTR 166 (255)
T ss_pred CCC----ccceeeec--CCcc-eEEECCCc
Confidence 752 24667776 2333 34554443
No 16
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=95.84 E-value=0.022 Score=53.90 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=41.1
Q ss_pred CCceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccchhhHHhhh
Q 020463 198 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWE 247 (326)
Q Consensus 198 ~~lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e 247 (326)
.+...|+||+|++||..+ +..++.+|+.++|.++...-++-.+.++.|.
T Consensus 100 ~~~~iE~Eiaf~l~~dl~-~~~~t~~ev~~ai~~v~paiEivdsr~~~~~ 148 (262)
T PRK11342 100 LQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDWS 148 (262)
T ss_pred CCcceeeEEEEEECCCCC-CCCCCHHHHHHhhceEeeeEEecCCcccCCC
Confidence 456789999999999842 3568999999999999999999888887664
No 17
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=95.16 E-value=0.046 Score=51.95 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=42.9
Q ss_pred CCceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccchhhHHhhh
Q 020463 198 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWE 247 (326)
Q Consensus 198 ~~lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e 247 (326)
-+.-.|+||||++||..+ +...+.+|+.++|.++...-++..+.++.|.
T Consensus 101 ~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEi~dsr~~~~~ 149 (267)
T TIGR02312 101 IQPRVEVELAFVLKKDLE-GPNVTIFDVLNATDYVVPALEIIDARIERVD 149 (267)
T ss_pred cccccceEEEEEECCCCC-CCCCCHHHHHHHhheEEeeEEEeeccccccc
Confidence 356799999999999832 3688999999999999999999999999875
No 18
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.13 E-value=0.12 Score=48.92 Aligned_cols=90 Identities=24% Similarity=0.385 Sum_probs=67.6
Q ss_pred CCCCCCCCcCeeeeCCCCccccCCCceecCCCCccCCCCCCCCCCCCCCceeceEEE--EEEcCCCCCCCcCCHhhHhhc
Q 020463 151 AVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMA--AVVGPGNELGKPIDVNEAADH 228 (326)
Q Consensus 151 p~~p~~~~~Pv~f~k~~ssvvg~g~~I~~P~gq~~~~~~~~p~~~~s~~lD~E~ELa--vVIGk~~~~g~~i~~eeA~d~ 228 (326)
..+|+|| |.+.-+.+|.+|.++..|.. .+.=--|.||+ -+||.. |.+ |
T Consensus 138 GvQPEWF-----yKG~G~~~vapGa~l~sPaF--------------AedggEEpEiaGiYlig~d---g~p--------~ 187 (333)
T COG3802 138 GVQPEWF-----YKGDGTVAVAPGAPLPSPAF--------------AEDGGEEPEIAGIYLIGDD---GTP--------Y 187 (333)
T ss_pred CcCcceE-----EeCCCcEEecCCCCCCChhh--------------hhccCCCceeeEEEEECCC---Cce--------e
Confidence 3578885 88889999999999888854 33344578887 568988 774 6
Q ss_pred eeeeeeecccchhhHHhhhhCCCCCcccccCCCCcCCccccCcc
Q 020463 229 IFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDA 272 (326)
Q Consensus 229 IfGytl~ND~SARDiQ~~e~~plg~~~gKsfdtsiGPwiVt~de 272 (326)
=.||++.|.+|---..+..| |--.++|=...++||-|..-+.
T Consensus 188 RlGfal~NEfSDHvtEr~NY--L~LAHSKLR~as~GPEl~vG~l 229 (333)
T COG3802 188 RLGFALANEFSDHVTERVNY--LYLAHSKLRNASFGPELLVGAL 229 (333)
T ss_pred EEeeeecchhhhhhhhccce--EEeehhhhhccccCcceeeccC
Confidence 78999999999877766665 2234788878899998877543
No 19
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=73.66 E-value=11 Score=35.79 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=43.9
Q ss_pred CCceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccchhhHHhhhhCCCCCcccccCCCC---cCCccccCc
Q 020463 198 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT---LSPWIVTLD 271 (326)
Q Consensus 198 ~~lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~SARDiQ~~e~~plg~~~gKsfdts---iGPwiVt~d 271 (326)
.+.-.|+|+++++|+.. .+...+.+|..++|-.+...-.+--.-+..|. ..+....+-|.... +||++...+
T Consensus 104 ~~p~vE~Eiaf~l~~~l-~~~~~t~~ev~~ai~~v~paiEivdsR~~~~~-~~~~~~iADn~~~~~~vlG~~~~~~~ 178 (263)
T TIGR03218 104 IHPKVEAEIAFVTKAPL-KGPGCHIGDVLAATDFVMPAVEVIDSRYRDFK-FDLKSVIADNTSSARFVTGGRAANVE 178 (263)
T ss_pred CcceeeeEEEEEECCCC-CCCCCCHHHHHHhhcEEEeeEEeccCcccCCC-CChhheeeeccccceEEECCCCCCcc
Confidence 34578999999999974 24678999998888877766655444444332 11112233332221 787765543
No 20
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.97 E-value=11 Score=35.83 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=44.5
Q ss_pred ceeceEEEEEEcCCCCCCCcCCHhhHhhceeeeeeecccc-hhhHHhhhhCCCCCcccccC--CCC-cCCccccCcccC
Q 020463 200 LDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWS-ARDIQAWEYVPLGPFLGKSF--GTT-LSPWIVTLDALE 274 (326)
Q Consensus 200 lD~E~ELavVIGk~~~~g~~i~~eeA~d~IfGytl~ND~S-ARDiQ~~e~~plg~~~gKsf--dts-iGPwiVt~del~ 274 (326)
.-+|+||++|++|..+ |-+.+..|+++||.=+...-.+- +|=-|.|+- ++--+.+-|. ++. |||=.+.++.++
T Consensus 103 prvE~EiafvL~kdlp-a~~~T~~d~l~a~~~v~palElidsri~~d~~~-~~~dtiaDnaan~G~ViG~~~~~~~~ld 179 (264)
T COG3971 103 PRVEVEIAFVLKKDLP-APDCTVADVLNATDYVLPALELIDSRIKQDWQV-KFPDTIADNAANAGFVIGGRAVKPDDLD 179 (264)
T ss_pred eeeeeeEEEEecCCCC-CCCCCHHHHHHHHHhhhhhhhhccchhhhCCCC-CcceEEecccccCceEECCCCCCchhhh
Confidence 3899999999999854 46899999999986655544432 222223321 1111223332 223 897667776664
No 21
>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes. In most cases these proteins also contain IPR002529 from INTERPRO, which is found towards the C terminus. ; PDB: 3RR6_A 2DFU_D 3QDF_A.
Probab=37.48 E-value=40 Score=23.65 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=20.1
Q ss_pred CCeEEEeeCCCCCceeEEEECCeEEech
Q 020463 20 LPYGVFKPEPASVARPGVAIGEYVLDLS 47 (326)
Q Consensus 20 lp~g~fs~~~~~~~r~Gv~igd~viDL~ 47 (326)
|.|+.|+.. +..+.|++.||.|.-|.
T Consensus 1 Mr~~Rf~~~--g~~~~G~l~gd~v~~l~ 26 (50)
T PF10370_consen 1 MRIVRFSHG--GEIRYGVLEGDRVRVLD 26 (50)
T ss_dssp -EEEEEEET--TEEEEEEEETTCEEEEC
T ss_pred CeEEEEeeC--CCcEEEEEECCEEEEEE
Confidence 578899764 47899999999977554
No 22
>PF08965 DUF1870: Domain of unknown function (DUF1870); InterPro: IPR015060 This family consist of hypothetical bacterial proteins. ; PDB: 1S4K_A.
Probab=31.69 E-value=27 Score=29.44 Aligned_cols=24 Identities=42% Similarity=0.554 Sum_probs=15.1
Q ss_pred CCHhhHhhceeeeeeecccchhhHHhhhh
Q 020463 220 IDVNEAADHIFGVMLMNDWSARDIQAWEY 248 (326)
Q Consensus 220 i~~eeA~d~IfGytl~ND~SARDiQ~~e~ 248 (326)
.+.+||..| |.+|+++|.||.||.
T Consensus 15 lt~~EaA~~-----Ia~~v~~~tWq~WE~ 38 (118)
T PF08965_consen 15 LTVEEAAYY-----IAQDVSSRTWQQWEK 38 (118)
T ss_dssp --HHHHHHH-----TSSS--HHHHHHHHT
T ss_pred CCHHHHHHH-----HHccCCHHHHHHHHc
Confidence 345555555 357999999999996
No 23
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=30.94 E-value=9.5 Score=31.54 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=12.2
Q ss_pred CHhhHhhceeeeee
Q 020463 221 DVNEAADHIFGVML 234 (326)
Q Consensus 221 ~~eeA~d~IfGytl 234 (326)
-.++|++||+||++
T Consensus 74 ~e~d~l~YiaGyVa 87 (106)
T PF12596_consen 74 IEEDGLEYIAGYVA 87 (106)
T ss_pred hHHHHHHHHHHHHH
Confidence 57899999999984
Done!