RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020463
(326 letters)
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 380 bits (977), Expect = e-131
Identities = 177/325 (54%), Positives = 218/325 (67%), Gaps = 1/325 (0%)
Query: 2 ALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK 61
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I + K
Sbjct: 1 GSMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPA-LSK 59
Query: 62 DSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLL 121
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M L
Sbjct: 60 HQHVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHL 119
Query: 122 PMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPR 181
P IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP
Sbjct: 120 PATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPM 179
Query: 182 GQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR 241
GQ P + PP +G + LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSAR
Sbjct: 180 GQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSAR 239
Query: 242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDI 301
DIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI
Sbjct: 240 DIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDI 299
Query: 302 SLEVQIKPAGKEDSCVVTRSNFKYL 326
+L V +K G + + RSNFK++
Sbjct: 300 NLSVSLKGEGMSQAATICRSNFKHM 324
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 108 bits (270), Expect = 5e-27
Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 28/208 (13%)
Query: 75 LSLGRPAWKEARDMLQKL-----LSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGD-Y 128
L+ AR + L + + + + + + P+ +
Sbjct: 43 LTRCSEVGHIARTLQAALDDWAHAGPRLERVAEGIETGAQPTMRFHEHDAASPLPRAFQW 102
Query: 129 TDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSG 188
D + ++H + +PA+++ P+ Y G + S + I+
Sbjct: 103 ADGSAYVNHVELVRKARNAE---MPASFWTDPLIYQGGSDSFLGPRDPILMADD------ 153
Query: 189 NSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEY 248
+ +D E E A +V ++EA I VML+ND S R + E
Sbjct: 154 --------AWGIDMEGEAAVIVDDV---PMGATLDEAKAAIRLVMLVNDVSLRGLIPGEL 202
Query: 249 VP-LGPFLGKSFGTTLSPWIVTLDALEP 275
G + K + SP VT + L
Sbjct: 203 AKGFGFYQSKPS-SAFSPVAVTPEELGE 229
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 79.7 bits (197), Expect = 4e-17
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 33/129 (25%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+S+ ++ PR S LD+E+E+A V+G G I+ ++A
Sbjct: 136 PTSISGPRDAVIAPRT--------------SHALDYEIEIAVVIGKP---GYRIERSQAI 178
Query: 227 DHIFGVMLMNDWSARDIQAWEYVPLGP-----FLGKSFGTT--LSPWIVTLDALEPFACD 279
H+ G ML ND +ARD+ P GK + T PW+ T +
Sbjct: 179 KHVAGYMLANDITARDVALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDT----- 233
Query: 280 SPKQDPQPL 288
+
Sbjct: 234 ----TFETF 238
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 72.3 bits (178), Expect = 9e-15
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 32/115 (27%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+S++ G I P + ++ E E+A V+G K + AA
Sbjct: 96 NTSIIGPGLPIQLPPS--------------ATEVHHEGELAIVIG---RPCKDVPAARAA 138
Query: 227 DHIFGVMLMNDWSARDIQA----WEYVPLGPFLGKSFGTT--LSPWIVTLDALEP 275
++I G + ND SARD Q W K T L PWIVT L+P
Sbjct: 139 ENILGYTIGNDVSARDHQRADGQW-------TRAKGHDTFCPLGPWIVT--DLDP 184
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 71.8 bits (177), Expect = 9e-15
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+S++ ++ P+G ++ + +E+E+A VVG K + +A
Sbjct: 75 NTSLLPHKGVVLYPKG--------------ARFVHYEVELAVVVG---RPMKRVRAKDAL 117
Query: 227 DHIFGVMLMNDWSARDIQAWEYVPLGPFL-GKSFGTT--LSPWIVTLDALEP 275
D++ G + ND ARD + P + K T L P++V + +P
Sbjct: 118 DYVLGYTIANDLVARDYVTNTF---RPPIRAKGRDTFLPLGPFLVVEEVEDP 166
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 72.6 bits (179), Expect = 2e-14
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+++ VRP + + +E E+ V+G + + + +A
Sbjct: 254 PNTLTGDNQTSVRPNN--------------IEYMHYEAELVVVIG---KQARNVSEADAM 296
Query: 227 DHIFGVMLMNDWSARDIQAWEYVPLGPFL-GKSFGTT--LSPWIVTLDALEPFACDSPKQ 283
D++ G + ND++ RD Y P L KS + IV +A+
Sbjct: 297 DYVAGYTVCNDYAIRDYLENYY---RPNLRVKSRDGLTPMLSTIVPKEAIP--------- 344
Query: 284 DPQPL 288
DP L
Sbjct: 345 DPHNL 349
Score = 68.0 bits (167), Expect = 6e-13
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 35/141 (24%)
Query: 137 HAKNCG-TIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 195
+ P A P + + ++V+ G I P+
Sbjct: 15 QLDAWQEAFQQSPYKAPPKT----AVWFIKPRNTVIGCGEPIPFPQ-------------- 56
Query: 196 PSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQA---WEYVPLG 252
+K+ +A +VG + + +AA++I G L ND S +
Sbjct: 57 -GEKVLSGATVALIVG---KTATKVREEDAAEYIAGYALANDVSLPEESFYRPA------ 106
Query: 253 PFLGKSFGTT--LSPWIVTLD 271
K + + +
Sbjct: 107 -IKAKCRDGFCPIGETVALSN 126
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 70.0 bits (172), Expect = 4e-14
Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 47/174 (27%)
Query: 112 VPMGKVEMLLPME------IG-DYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLP---I 161
+ V +L P +G +Y + H + G F P F +
Sbjct: 34 YDLASVTLLPPATPTKIVCVGRNYRE------HIREMGHDFGEDLPKEPG-LFLKGPNAL 86
Query: 162 AYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPID 221
A G + + P +++L +E E+A VVG + + +
Sbjct: 87 ARPGNPRDPWGTAEPVPYPFF--------------TEELHYEGELAVVVG---DRMRHVP 129
Query: 222 VNEAADHIFGVMLMNDWSARDIQA----WEYVPLGPFLGKSFGTT--LSPWIVT 269
+A DH+ G + D +ARD+Q W KS L PW+ T
Sbjct: 130 PEKALDHVLGYTVAVDITARDVQKKDLQW-------VRAKSADKFLPLGPWLET 176
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 67.2 bits (165), Expect = 3e-13
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 20/106 (18%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+++ G+ I+ P ++ L ELE+ V+G + + A
Sbjct: 50 STAYAPEGSPILMPAY--------------TRNLHHELELGVVMGKR---CRAVPEAAAM 92
Query: 227 DHIFGVMLMNDWSARDIQAWEYVPLGPF-LGKSFGTT--LSPWIVT 269
D++ G L D +ARD+Q P+ L KSF + +S ++
Sbjct: 93 DYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPK 138
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
Length = 221
Score = 66.4 bits (163), Expect = 5e-13
Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 34/119 (28%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+++ + P+ + E+E+A ++G K + A
Sbjct: 51 ETALCDIRQPVSIPKD--------------FGSVHHEIELAVLIGTP---LKQASEDRVA 93
Query: 227 DHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--LSPWIVTLDALEP 275
I G + D + R++QA WE K+F + +S +I + +
Sbjct: 94 RAIAGYGVALDLTLRELQAGFKKAGQPWE-------KAKAFDGSCPISGFIPVAEFGDA 145
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 64.5 bits (158), Expect = 2e-12
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 34/113 (30%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
ASS V G P+ + ELE+A ++G + + A
Sbjct: 47 ASSAVPFGPVFSIPKD--------------QGSVHHELEIAILIG---KALSRASTEQVA 89
Query: 227 DHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--LSPWIVT 269
+ I G+ L D + RD+Q WE KSF L+ ++
Sbjct: 90 ESIAGIGLGLDLTLRDVQDQLKEKGHPWE-------RAKSFDGACPLTEFVAV 135
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 60.1 bits (146), Expect = 1e-10
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 33/126 (26%)
Query: 167 ASSVVISGTDIVRPRG--------QFAPSGNSPPPFGP--SQKLDFELEMAAVVGPGNEL 216
SS+V + + G +P P K+ E+E+A +V +
Sbjct: 41 TSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVS---KH 97
Query: 217 GKPIDVN---EAADHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--L 263
+ E D I GV L D +AR++Q W + K F T +
Sbjct: 98 LSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWT-------ISKGFDTFMPI 150
Query: 264 SPWIVT 269
S +
Sbjct: 151 SAIVSR 156
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 58.9 bits (143), Expect = 4e-10
Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 51/141 (36%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+ V G I S+ E E+A V+ +
Sbjct: 121 PNRCVGHGEAIAVRSD--------------SEWTLPEPELAVVLD-------------SN 153
Query: 227 DHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQD 284
I G +M+D SARD++A PL K + P IVT D ++ +
Sbjct: 154 GKILGYTIMDDVSARDLEAEN--PLYLPQSKIYAGCCAFGPVIVTSDEIK---------N 202
Query: 285 PQPLPYLAEKISKNYDISLEV 305
P L DI+L++
Sbjct: 203 PYSL-----------DITLKI 212
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.036
Identities = 65/349 (18%), Positives = 102/349 (29%), Gaps = 138/349 (39%)
Query: 3 LQSFIEVEPD--SHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
L I D F Q L + P++ P +Y L IS P++
Sbjct: 195 LSELIRTTLDAEKVFT-QGLNILEWLENPSN--TPDK---DY-LLSIPIS------CPLI 241
Query: 61 KDSDCFLQ--------------P-NLNKFLS--LGR-------------PAWKE----AR 86
+Q P L +L G +W+ R
Sbjct: 242 ----GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 87 DMLQKL-------------LSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFS 133
+ L S + L D+ + PM + L ++ DY +
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT- 356
Query: 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRP----------RGQ 183
N PA + I+ A ++V+SG P R
Sbjct: 357 ------NS----HLPAGK------QVEISLVNGAKNLVVSGP----PQSLYGLNLTLRKA 396
Query: 184 FAPSGN--SPPPFGPSQ-KLDFELEMAAVVGPGNELGKPIDV-------NEAADHIFGVM 233
APSG S PF S+ KL F L P+ A+D I +
Sbjct: 397 KAPSGLDQSRIPF--SERKLKFSNRF---------L--PVASPFHSHLLVPASDLINKDL 443
Query: 234 LMND--WSARDIQAWEYVPLGPF----------LGKSFGTTLSPWIVTL 270
+ N+ ++A+DIQ +P+ + L S + I+ L
Sbjct: 444 VKNNVSFNAKDIQ----IPV--YDTFDGSDLRVLSGSISERIVDCIIRL 486
Score = 34.3 bits (78), Expect = 0.063
Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 62/200 (31%)
Query: 79 RPAWKEA-RDMLQKLLSSNEATLRDNANLRQKSLV-----PMGK--VEMLLPMEIGDYTD 130
+ W A S + +N +L GK E M D
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNP----VNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 131 -------FFSSMHHAKNCGTIFRGPA-------NAVPA-------------NWFHLP--- 160
F ++ + FR PA + +P
Sbjct: 1699 GKLKTEKIFKEINE-HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 161 -IAYH--G-----RASSVVIS---GTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAV 209
A H G + + V+S ++V RG P + ++ M A
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM---QVAVPRDELGRSNY--GMIA- 1811
Query: 210 VGPGNELGKPIDVNEAADHI 229
+ PG + EA ++
Sbjct: 1812 INPG-RVAASFS-QEALQYV 1829
Score = 28.9 bits (64), Expect = 3.3
Identities = 42/260 (16%), Positives = 66/260 (25%), Gaps = 129/260 (49%)
Query: 6 FIEVEPDSH--FPIQNLPYGVFK---------PEP-ASVAR-PGVAIGEYV------LDL 46
FI V + +P +LP + + P P S++ + +YV L
Sbjct: 305 FIGVR--CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 47 SE---ISKAGLFNGPILKDSDCF-----------LQPNLNK------------------- 73
+ IS L NG L L K
Sbjct: 363 GKQVEIS---LVNGA-----KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 74 -----FLSLGRP----AWKEARDMLQKLLSSNEATL------------RDNANLRQ--KS 110
FL + P A D++ K L N + D ++LR S
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 111 LVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSV 170
+ ++ I R +P W +A+ +
Sbjct: 475 ISE-----RIVDC--------------------IIR-----LPVKW---ETTTQFKATHI 501
Query: 171 VISGTDIVRPRGQFAPSGNS 190
+ D F P G S
Sbjct: 502 L----D-------FGPGGAS 510
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.046
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 86/265 (32%)
Query: 55 FNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPM 114
F + + DC K+ +DM + +LS E ++
Sbjct: 25 FEDAFVDNFDC-----------------KDVQDMPKSILSKEEI----------DHIIMS 57
Query: 115 GKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISG 174
G F++ + + F + + PI R S++
Sbjct: 58 KDAVS------GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 175 TDIVRPRGQFAPSGNSPPPFGP----SQKLDFELEMA----------AVVG-PGNELGKP 219
R R N F + +L A + G G GK
Sbjct: 112 YIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKT 164
Query: 220 IDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACD 279
+ + + F W+ L C+
Sbjct: 165 WVALDVC--------------LSYKVQCKMDFKIF-----------WL-NLKN-----CN 193
Query: 280 SPKQDPQPLPYLAEKISKNYDISLE 304
SP+ + L L +I N+ +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSD 218
Score = 33.7 bits (76), Expect = 0.089
Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 76/218 (34%)
Query: 6 FIEVEPDSHFPIQNLPYGVFKPEPASV-ARPGVAIGEYVLDLSEISKAG------LFNGP 58
F+ +H + + + E S+ + + DL +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSII-AE 335
Query: 59 ILKD----SDCFLQPNLNKF-----LSLG--RPAWKEARDMLQKLLSSNEATLRDNANLR 107
++D D + N +K SL PA E R M +L + +A+
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRL-----SVFPPSAH-- 386
Query: 108 QKSLVPMGKVEML-------LPMEI-----------GDYTDFFSSMH------------- 136
+P + ++ M + + S+
Sbjct: 387 ----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 137 ---HAK--NCGTIFRG-PANAVPANW----FHLPIAYH 164
H + I + ++ + + F+ I +H
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
>1yew_B Particulate methane monooxygenase, A subunit; membrane protein,
beta barrel, oxidoreductase; 2.80A {Methylococcus
capsulatus} PDB: 3rgb_B
Length = 247
Score = 26.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 153 PANW-----FHLPIAYHGRASSVV-ISGTDIVRPR 181
P NW H+P+ Y+G S+ I G + VR
Sbjct: 158 PGNWPIIAPLHVPVEYNGMLMSIADIQGYNYVRTG 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.421
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,065,813
Number of extensions: 300268
Number of successful extensions: 579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 22
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)