RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020463
(326 letters)
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 228 bits (581), Expect = 6e-74
Identities = 121/202 (59%), Positives = 149/202 (73%)
Query: 125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF 184
IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP GQ
Sbjct: 3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 62
Query: 185 APSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ 244
P + PP +G + LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSARDIQ
Sbjct: 63 RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 122
Query: 245 AWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLE 304
WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI+L
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182
Query: 305 VQIKPAGKEDSCVVTRSNFKYL 326
V +K G + + RSNFK++
Sbjct: 183 VSLKGEGMSQAATICRSNFKHM 204
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 118
Score = 136 bits (343), Expect = 1e-40
Identities = 56/118 (47%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSD 64
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I + K
Sbjct: 2 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPA-LSKHQH 60
Query: 65 CFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLP 122
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP
Sbjct: 61 VFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLP 118
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 257
Score = 55.2 bits (132), Expect = 2e-09
Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 21/162 (12%)
Query: 137 HAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPS--------- 187
H K N+ P P + SS+V + + + A S
Sbjct: 21 HIKELN-------NSTPKQ----PFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDG 69
Query: 188 -GNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAW 246
P K+ E+E+A +V + E D I GV L D +AR++Q
Sbjct: 70 TNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDE 129
Query: 247 EYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPL 288
P+ T P + + + S QD +
Sbjct: 130 AKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRV 171
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA
{Ochrobactrum anthropi [TaxId: 529]}
Length = 367
Score = 28.7 bits (64), Expect = 0.93
Identities = 10/103 (9%), Positives = 24/103 (23%), Gaps = 12/103 (11%)
Query: 153 PANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVV-- 210
+ +P+ A +G + G P + + A V
Sbjct: 58 MQSETPVPV----YAGVHRFNGNGEMTGTHWIEDGGYFLGPVVITNTHGIGMAHHATVRW 113
Query: 211 -----GPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEY 248
+ + + + L ND + + +
Sbjct: 114 MVDRYASTYQTDDFLWIMPVVAETYDGAL-NDINGFPVTEADV 155
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 28.1 bits (62), Expect = 1.6
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 69 PNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDY 128
P++ S R W +AR+ L L N L Q SL + +Y
Sbjct: 225 PSIAALTSEERTRWAKAREYLISLDPENLTLLE----KIQTSLFVYSIEDSSPHATPEEY 280
Query: 129 TDFFSSMHH 137
+ F +
Sbjct: 281 SQVFEMLLG 289
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain
{Escherichia coli [TaxId: 562]}
Length = 133
Score = 26.9 bits (59), Expect = 2.0
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 122 PMEIGDYTDFFSSMHHAKNCG-TIFRGPAN 150
PME+ D D K+ +F GPAN
Sbjct: 2 PMELTDVADLL------KSVEFAVFAGPAN 25
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium
meliloti [TaxId: 382]}
Length = 79
Score = 25.5 bits (56), Expect = 2.7
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 214 NELGKPIDVNEAADHIFGVMLMNDW 238
G P+ E+ + ++G M +W
Sbjct: 54 EASGVPMSKEESREIVYG-MPYEEW 77
>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
1351]}
Length = 474
Score = 26.8 bits (59), Expect = 4.4
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
+Q +E +HF + +P E A+ A G + + +++ +KA +
Sbjct: 28 IQDVHLLEKLAHFNRERVP------ERVVHAKGAGAHGIFKVSQSMAQYTKADFLSEV 79
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId:
210]}
Length = 491
Score = 26.4 bits (58), Expect = 5.1
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
LQS +E + F + +P E A+ A G + + D+++ +KA +F+
Sbjct: 33 LQSTWFLEKLAAFDRERIP------ERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKV 84
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 26.5 bits (58), Expect = 5.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
L+ FI E +HF + +P E AR A G + LS+I+KA + P
Sbjct: 79 LEDFILREKITHFDHERIP------ERIVHARGSAAHGYFQPYKSLSDITKADFLSDP 130
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 26.4 bits (58), Expect = 5.8
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
LQ +E +HF + +P E A+ A G + + D+++ ++A +F+
Sbjct: 28 LQDVWFLEKLAHFDREVIP------ERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEV 79
>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 488
Score = 26.4 bits (58), Expect = 6.2
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
LQ + ++ +HF +N+P + A A G + + D+++I + +F+
Sbjct: 33 LQDYNLIDSLAHFNRENIP------QRNPHAHGSGAFGYFEVTDDITDICGSAMFSKI 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.421
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,234,744
Number of extensions: 57788
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 16
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)