BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020464
         (326 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast
           Mg2+ Channel Mrs2
          Length = 261

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 92  TILGREKAIVVSLVQIRCIITADEVILMNSLDGC------VVQYYLELCKRLQTNKDQAD 145
           TI+ +   IV++L+ I+ +I  D+V + ++ +        V+ Y LE   +L + K+ + 
Sbjct: 64  TIMCKPNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLE--SKLSSTKNNSQ 121

Query: 146 DLPFEFRXXXXXXXXTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLAL 205
              +E R           +L+   K        +L++L + ++ L L HL      L   
Sbjct: 122 --FYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLF 179

Query: 206 TQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSD 243
            Q+   + D ++ L+++D D+A MYLT KK   D+ SD
Sbjct: 180 YQKTLLIRDLLDELLENDDDLANMYLTVKKSPKDNFSD 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,039,680
Number of Sequences: 62578
Number of extensions: 282039
Number of successful extensions: 615
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 5
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)