Query 020464
Match_columns 326
No_of_seqs 187 out of 329
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 2.2E-78 4.8E-83 590.0 26.7 295 2-325 15-324 (414)
2 PF01544 CorA: CorA-like Mg2+ 95.5 0.97 2.1E-05 41.8 16.1 161 48-221 4-179 (292)
3 TIGR00383 corA magnesium Mg(2+ 90.7 12 0.00025 35.9 15.1 150 66-222 41-204 (318)
4 PRK09546 zntB zinc transporter 81.0 42 0.00092 32.5 13.4 109 106-222 103-211 (324)
5 COG0598 CorA Mg2+ and Co2+ tra 62.3 1.6E+02 0.0034 28.7 13.6 165 48-225 33-212 (322)
6 PF05591 DUF770: Protein of un 61.4 20 0.00043 32.1 5.5 39 191-229 110-151 (157)
7 TIGR03358 VI_chp_5 type VI sec 49.4 26 0.00056 31.5 4.2 39 191-229 111-152 (159)
8 PF12325 TMF_TATA_bd: TATA ele 45.7 1.9E+02 0.0042 24.7 9.3 71 158-230 35-112 (120)
9 PF10083 DUF2321: Uncharacteri 45.3 1.6E+02 0.0036 26.5 8.6 75 144-220 75-150 (158)
10 PF14125 DUF4292: Domain of un 44.0 32 0.00069 31.2 4.1 55 95-158 32-94 (210)
11 PF07889 DUF1664: Protein of u 43.8 1.5E+02 0.0033 25.6 7.9 31 158-188 41-71 (126)
12 PF03233 Cauli_AT: Aphid trans 34.4 2.8E+02 0.0061 25.2 8.3 126 89-219 7-161 (163)
13 TIGR02132 phaR_Bmeg polyhydrox 32.9 2.8E+02 0.006 25.7 8.2 61 157-217 76-138 (189)
14 PF07106 TBPIP: Tat binding pr 32.2 3.5E+02 0.0075 23.7 8.7 63 148-214 71-137 (169)
15 PF06103 DUF948: Bacterial pro 31.4 2.5E+02 0.0055 21.9 8.0 19 166-184 32-50 (90)
16 PF08970 Sda: Sporulation inhi 31.2 40 0.00087 24.3 2.0 13 304-316 7-19 (46)
17 COG3516 Predicted component of 30.9 57 0.0012 29.6 3.4 39 191-229 116-157 (169)
18 PF05597 Phasin: Poly(hydroxya 30.8 3.6E+02 0.0078 23.4 8.6 67 153-219 58-128 (132)
19 PF05377 FlaC_arch: Flagella a 30.5 1.3E+02 0.0028 22.6 4.7 23 208-230 22-44 (55)
20 PF08317 Spc7: Spc7 kinetochor 30.0 3.9E+02 0.0085 26.1 9.4 14 64-77 14-27 (325)
21 PF10157 DUF2365: Uncharacteri 29.1 2.9E+02 0.0063 24.5 7.5 14 126-139 5-19 (149)
22 PF09763 Sec3_C: Exocyst compl 27.9 3.9E+02 0.0084 28.9 9.7 71 150-221 13-96 (701)
23 PF15205 PLAC9: Placenta-speci 27.4 1.8E+02 0.0038 22.9 5.1 32 152-187 28-59 (74)
24 TIGR02976 phageshock_pspB phag 26.8 1.3E+02 0.0028 23.7 4.4 34 187-224 36-69 (75)
25 PRK10548 flagellar biosynthesi 25.6 1.9E+02 0.0041 24.7 5.6 61 157-229 21-81 (121)
26 PF10234 Cluap1: Clusterin-ass 24.4 3.8E+02 0.0083 26.0 8.0 61 145-206 154-217 (267)
27 PF11945 WASH_WAHD: WAHD domai 23.8 4.3E+02 0.0092 26.0 8.3 57 170-235 28-84 (297)
28 KOG4643 Uncharacterized coiled 23.4 2.8E+02 0.006 32.0 7.6 80 143-235 159-239 (1195)
29 KOG3647 Predicted coiled-coil 23.2 3.8E+02 0.0083 26.5 7.7 48 145-192 97-147 (338)
30 PF04799 Fzo_mitofusin: fzo-li 22.7 5.9E+02 0.013 23.2 8.7 51 127-177 78-137 (171)
31 KOG1830 Wiskott Aldrich syndro 22.6 99 0.0021 32.2 3.8 85 153-238 25-109 (518)
32 PHA02047 phage lambda Rz1-like 22.2 3.6E+02 0.0079 22.5 6.3 30 195-224 50-79 (101)
33 PF15397 DUF4618: Domain of un 21.9 7E+02 0.015 24.2 9.2 88 147-236 68-156 (258)
34 PF04799 Fzo_mitofusin: fzo-li 21.3 6.3E+02 0.014 23.0 9.2 69 151-219 88-163 (171)
35 PF06667 PspB: Phage shock pro 21.2 1.9E+02 0.0042 22.8 4.4 35 186-224 35-69 (75)
36 PF14712 Snapin_Pallidin: Snap 21.2 4E+02 0.0087 20.7 9.4 64 150-219 25-90 (92)
37 TIGR01834 PHA_synth_III_E poly 20.9 7E+02 0.015 25.0 9.2 29 193-221 289-317 (320)
38 TIGR01837 PHA_granule_1 poly(h 20.4 5.2E+02 0.011 21.7 7.2 22 193-214 96-117 (118)
39 smart00502 BBC B-Box C-termina 20.2 4.4E+02 0.0095 20.8 8.6 37 191-227 73-109 (127)
40 PF10274 ParcG: Parkin co-regu 20.0 3.1E+02 0.0067 25.2 6.1 19 145-163 50-68 (183)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-78 Score=590.04 Aligned_cols=295 Identities=50% Similarity=0.711 Sum_probs=260.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC---CCCCcccCCCcceEEEEEcCCCCeEEEeechHhHHHhhCCCC
Q 020464 2 GESRGPFLRAFIPGSTSSDDTGRLNLDA-RGNRGS---HSVGTKNRGHASRSWIKIDQDGNFEILELDKTTIMRHCSLPA 77 (326)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~k~~~~~~~~~~~D~~G~~~~~e~~K~~l~~~~gL~~ 77 (326)
..++.|+.++++|-..++-|+|.+.... ..++|. +..+.+|++.++++|++||++|++++.+++|++||+++||+|
T Consensus 15 ~l~~~~~~~s~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~a 94 (414)
T KOG2662|consen 15 ALRLTPFGRSSLPFLRSALKTGSPSNSSPPILGGGKIDSSSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPA 94 (414)
T ss_pred ccccCCCCccccchhhhhccCCCCCCCCCCCCCcccccCcccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCCh
Confidence 3567899999999999999999755444 335565 677888999999999999999999999999999999999999
Q ss_pred CcccCcCCCCCCCceeeecCCeEEeeccceeeEEeecceeeecCCCchhHHHHHHHHHHhccCC-----------CCCCC
Q 020464 78 RDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNK-----------DQADD 146 (326)
Q Consensus 78 RDLR~lDp~~~~PssIl~R~~aIlVNLe~IRAIIt~D~VLlfd~~~~~v~~fl~~L~~rL~~~~-----------~~~~~ 146 (326)
||||++||+++||++|++|++|||+||+|||||||+|+|+|||+.++ |.++..+++++|...+ +..+.
T Consensus 95 RDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s~~~~~~~~ 173 (414)
T KOG2662|consen 95 RDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLLLDSLDP-VIPYNEELQRRLPVELESRGNQLSSDGGSKDE 173 (414)
T ss_pred hhhhhccccccCccccccccceEEeehhhhheeeehhheeEeccccc-cchHHHHHHHHhcccccccccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999 9999999999987652 12368
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChhHH
Q 020464 147 LPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDM 226 (326)
Q Consensus 147 LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddDeDM 226 (326)
+||||||||+||+++|++|++++..||+.|+++||+|+++|++.||++||.+|++|++|.+|||+|||+|+|+||||+||
T Consensus 174 lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dm 253 (414)
T KOG2662|consen 174 LPFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDM 253 (414)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCCCCCCCcccccccccccccCCCCCCCCCCcchhhhhhhhhccccccCCCCccccCCCCcchHHHHHH
Q 020464 227 AAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEML 306 (326)
Q Consensus 227 a~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~dvEElEmL 306 (326)
|+||||+|+.+.++ +.|+|.+|+..... .+.+++-.+.. ...++|+||||||
T Consensus 254 a~mYLT~K~~~~~~-----------------~~~~~~sp~~~~~~----------~r~~~~~~~s~-~~~~dd~eElEML 305 (414)
T KOG2662|consen 254 AEMYLTRKLAQASS-----------------PESAPTSPTIKAGI----------SRAKSNRASST-VRGEDDVEELEML 305 (414)
T ss_pred HHHHHhHHhhhccc-----------------cccCCCCccccCCc----------cchhhcccchh-ccccccHHHHHHH
Confidence 99999999987652 35778888766643 12111111111 2238999999999
Q ss_pred HHHHHHHHHHHHhhhhhcc
Q 020464 307 LEAYFVVVDNTLSKLLSVR 325 (326)
Q Consensus 307 LEaYf~qiD~~~nkl~~Lr 325 (326)
|||||||||+|+||+.+||
T Consensus 306 LEaYf~qiD~~~nk~~~Lr 324 (414)
T KOG2662|consen 306 LEAYFMQIDSTLNKLESLR 324 (414)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987
No 2
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=95.47 E-value=0.97 Score=41.85 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCeEEEeechHhHHHhhCCCCCccc-CcCCCCCCCceeeecCCeEEeec--------------cceeeEEe
Q 020464 48 RSWIKIDQDGNFEILELDKTTIMRHCSLPARDLR-LLDPLFIYPSTILGREKAIVVSL--------------VQIRCIIT 112 (326)
Q Consensus 48 ~~~~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR-~lDp~~~~PssIl~R~~aIlVNL--------------e~IRAIIt 112 (326)
..|+-+...... ....|.+.+|+++..+. .+++.. .| .+-.=++.+++.+ .++..+++
T Consensus 4 ~~Wi~~~~~~~~-----~~~~l~~~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 76 (292)
T PF01544_consen 4 FVWIDLSGPDDE-----ELEWLAEEFGLHPLTIEDALDPEE-RP-RIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFILG 76 (292)
T ss_dssp -EEEEEETTTCH-----HHHHHHHTTTS-HHHHHHHCCTSS-SS-EEEEETTEEEEEEEEEEESTTCCECCEEEEEEEEE
T ss_pred cEEEEEeCCCHH-----HHHHHHHHhCcCHhHHHHHhCCCc-CC-EEEEECCeEEEEEEEcchhhcccccccceEEEEEe
Confidence 467777543332 44567888999988776 455432 12 2333333333222 14677777
Q ss_pred ecceeeecCCCchhHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhH
Q 020464 113 ADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNL 192 (326)
Q Consensus 113 ~D~VLlfd~~~~~v~~fl~~L~~rL~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~L 192 (326)
.+.++-+.... .+++.++..++.. .....+.-..++..+|..++..+...+..++..+..+=+.+.+.-....+
T Consensus 77 ~~~lit~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~ 150 (292)
T PF01544_consen 77 DNFLITVHRDP---LPFIDELRERLES---RNERPSSPEDLLYAILDEIVDDYFEVLEELEDELDELEDELDDRPSNELL 150 (292)
T ss_dssp TTEEEEEESSS---SHCHHHHHHHHHS---TTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHC
T ss_pred cceEEEEECCC---ChHHHHHHHHhhc---cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhH
Confidence 77777776544 2445555555541 23344556677999999999999999999988866665666555666788
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhC
Q 020464 193 EHLRRLKGHLLALTQQVQKVHDEIEHLMD 221 (326)
Q Consensus 193 e~Lr~lK~~L~~l~~rv~~Vrd~LeelLd 221 (326)
.++..+++.+..+..-+...++++.+++.
T Consensus 151 ~~l~~l~~~l~~l~~~l~~~~~~l~~~~~ 179 (292)
T PF01544_consen 151 RELFDLRRELSRLRRSLSPLREVLQRLLR 179 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 89999999999999999999999986665
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=90.70 E-value=12 Score=35.87 Aligned_cols=150 Identities=14% Similarity=0.163 Sum_probs=92.9
Q ss_pred hHhHHHhhCCCCCcccC-cCCCCCCCceeeecCCeEE-------------eeccceeeEEeecceeeecCCCchhHHHHH
Q 020464 66 KTTIMRHCSLPARDLRL-LDPLFIYPSTILGREKAIV-------------VSLVQIRCIITADEVILMNSLDGCVVQYYL 131 (326)
Q Consensus 66 K~~l~~~~gL~~RDLR~-lDp~~~~PssIl~R~~aIl-------------VNLe~IRAIIt~D~VLlfd~~~~~v~~fl~ 131 (326)
...+.+.+|+++-.+.- +|+. ..| .+-.-++... +...++.-+++.+.++-+..... +++.
T Consensus 41 ~~~l~~~~~l~~~~~ed~~~~~-~~~-k~e~~~~~~~i~~~~~~~~~~~~~~~~~l~~~l~~~~liTv~~~~~---~~~~ 115 (318)
T TIGR00383 41 LAKLGQFFAIHPLALEDILNSP-QRP-KVEEDEDHLFIISFFLNEDEDDTFETEQVSFILGKNLLFTIHEREL---PAFD 115 (318)
T ss_pred HHHHHHHcCcCcchHHHhhCCC-CCC-cEEEECCEEEEEEEeeeccCCCcceeEEEEEEEECCEEEEEEcCCC---CcHH
Confidence 35678889999987764 3431 112 1222222222 33455666777776666643331 3344
Q ss_pred HHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHH
Q 020464 132 ELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQK 211 (326)
Q Consensus 132 ~L~~rL~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~ 211 (326)
.+.+++..+......-| -..|-.+|..++..+..-+..++..+..+=+.+-++-....++++-.+|+.+..+..-+..
T Consensus 116 ~~~~~~~~~~~~~~~~~--~~ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~ 193 (318)
T TIGR00383 116 SIRERIRTSQKVFEKGA--DYLLYDIFDAIIDSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWP 193 (318)
T ss_pred HHHHHHHhCchhhhCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445443210111123 3468888888888888888888877666555554444556788899999999999999999
Q ss_pred HHHHHHHhhCC
Q 020464 212 VHDEIEHLMDD 222 (326)
Q Consensus 212 Vrd~LeelLdd 222 (326)
.+++++.+...
T Consensus 194 ~~~vl~~l~~~ 204 (318)
T TIGR00383 194 LRDVLNFLLRK 204 (318)
T ss_pred HHHHHHHHHcC
Confidence 99999988754
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=81.05 E-value=42 Score=32.47 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=68.9
Q ss_pred ceeeEEeecceeeecCCCchhHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 020464 106 QIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELAS 185 (326)
Q Consensus 106 ~IRAIIt~D~VLlfd~~~~~v~~fl~~L~~rL~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~ 185 (326)
++..+++.+.++-+.... ..++.++..++..+.+ ..-|.+ .|-.+|..++..+..-+..++..+..+=+.+-+
T Consensus 103 ~l~~~l~~~~lITv~~~~---~~~~~~~~~~~~~~~~--~~~~~~--ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~ 175 (324)
T PRK09546 103 AMRVYITDRLIVSTRHRK---VLALDDVVSDLQEGTG--PTDCGG--WLVDVCDALTDHASEFIEELHDKIIDLEDNLLD 175 (324)
T ss_pred EEEEEEeCCEEEEEecCC---cccHHHHHHHHHhCCC--CCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366677777776664322 2455555555544211 112433 556778888877777777777764443333322
Q ss_pred cCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCC
Q 020464 186 SISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDD 222 (326)
Q Consensus 186 ~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLdd 222 (326)
+- ...++++-.+|+.+..+..-+.-.++++..+...
T Consensus 176 ~~-~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~ 211 (324)
T PRK09546 176 QQ-IPPRGELALLRKQLIVMRRYMAPQRDVFARLASE 211 (324)
T ss_pred CC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1246788889999999999999999999988753
No 5
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=62.26 E-value=1.6e+02 Score=28.67 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCeEEEeechHhHHHhhCCCCCcccCcCCCCCCCceeeecCCeEEe--------------eccceeeEEee
Q 020464 48 RSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVV--------------SLVQIRCIITA 113 (326)
Q Consensus 48 ~~~~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR~lDp~~~~PssIl~R~~aIlV--------------NLe~IRAIIt~ 113 (326)
.-|+-++..+.. ....+-+.+|||+-.+.-+--....| .+..-++...+ -.+++.-|++.
T Consensus 33 ~~Widl~~p~~~-----e~~~l~~~~~l~~~~~ed~~~~~~r~-r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~~~ 106 (322)
T COG0598 33 FVWIDLVEPDDE-----ELEWLAKTFGLHPLALEDLLDAEQRP-KVERYDDYLFIVLRDVNLEEEEDKAETEPVSIIVGK 106 (322)
T ss_pred eEEEECCCCCHH-----HHHHHHHhcCCCcchHHHHhCcccCC-ceEeeCCEEEEEEEeeccccccccccceeEEEEEeC
Confidence 457766543322 23566778999998777532211112 23333322211 24556667777
Q ss_pred cceeeecCCC-chhHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhH
Q 020464 114 DEVILMNSLD-GCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNL 192 (326)
Q Consensus 114 D~VLlfd~~~-~~v~~fl~~L~~rL~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~L 192 (326)
+.++-+-... +....+. .|+... .....-|. .++.++|..++..+-.-+..++.....+=+.+..+-....|
T Consensus 107 ~~liT~r~~~~~~~~~vr----~r~~~~-~~~~~~~~--~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l 179 (322)
T COG0598 107 RRLITIRHRPLPAFDRVR----ERLEKG-TLLTRGAD--ELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEEL 179 (322)
T ss_pred CEEEEEecCCCccHHHHH----HHHhcc-ccccCCHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 7776665422 2333443 343331 01122233 45667777777777776777777655554555554455789
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhCChhH
Q 020464 193 EHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGD 225 (326)
Q Consensus 193 e~Lr~lK~~L~~l~~rv~~Vrd~LeelLddDeD 225 (326)
+++-.+++.+..+..-+...++++..++..+.+
T Consensus 180 ~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~ 212 (322)
T COG0598 180 ERLGELRRSLVYLRRALAPLRDVLLRLARRPLD 212 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcc
Confidence 999999999999999999999999999988766
No 6
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=61.43 E-value=20 Score=32.06 Aligned_cols=39 Identities=15% Similarity=0.338 Sum_probs=30.7
Q ss_pred hHHHHHHHHhHHHHHHHHHH---HHHHHHHHhhCChhHHhhc
Q 020464 191 NLEHLRRLKGHLLALTQQVQ---KVHDEIEHLMDDDGDMAAM 229 (326)
Q Consensus 191 ~Le~Lr~lK~~L~~l~~rv~---~Vrd~LeelLddDeDMa~M 229 (326)
.|.+|..++++|..|.+.+. .+|+.|+++|.|.+.++.+
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l 151 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKL 151 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHH
Confidence 45566667777777777664 5899999999999998875
No 7
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=49.42 E-value=26 Score=31.48 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=30.9
Q ss_pred hHHHHHHHHhHHHHHHHHH---HHHHHHHHHhhCChhHHhhc
Q 020464 191 NLEHLRRLKGHLLALTQQV---QKVHDEIEHLMDDDGDMAAM 229 (326)
Q Consensus 191 ~Le~Lr~lK~~L~~l~~rv---~~Vrd~LeelLddDeDMa~M 229 (326)
.|.+|..++.+|..|.++. ..+|+.|+++|.|.+.++.+
T Consensus 111 ~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L 152 (159)
T TIGR03358 111 ELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKL 152 (159)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHH
Confidence 4566677777888888766 45999999999999988765
No 8
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=45.67 E-value=1.9e+02 Score=24.67 Aligned_cols=71 Identities=28% Similarity=0.361 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHHH-------HHHHHHhhCChhHHhhcc
Q 020464 158 LELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKV-------HDEIEHLMDDDGDMAAMY 230 (326)
Q Consensus 158 L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~V-------rd~LeelLddDeDMa~My 230 (326)
|..-+..|+++-..+..++.......+.. ......+..++..+..+..|.+.. -+.+++|=.|=.||..||
T Consensus 35 l~~el~~l~~~r~~l~~Eiv~l~~~~e~~--~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 35 LQEELARLEAERDELREEIVKLMEENEEL--RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544433322211 112344555666777777776664 456678888888999998
No 9
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.32 E-value=1.6e+02 Score=26.48 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=45.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHH-HHHHHHHHhh
Q 020464 144 ADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQ-KVHDEIEHLM 220 (326)
Q Consensus 144 ~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~-~Vrd~LeelL 220 (326)
..+.|+--++||++-+-+- .++.-...-.......+.+|...-...++-.+| +|+-|+.+.+-+. .+||.|-+++
T Consensus 75 GkpyPWt~~~L~aa~el~e-e~eeLs~deke~~~~sl~dL~~d~PkT~vA~~r-fKk~~~K~g~~v~~~~~dIlVdv~ 150 (158)
T PF10083_consen 75 GKPYPWTENALEAANELIE-EDEELSPDEKEQFKESLPDLTKDTPKTKVAATR-FKKILSKAGSIVGDAIRDILVDVA 150 (158)
T ss_pred CCCCchHHHHHHHHHHHHH-HhhcCCHHHHHHHHhhhHHHhhcCCccHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3568999999999976654 222222222334555677777665555554444 8877776666543 3666665554
No 10
>PF14125 DUF4292: Domain of unknown function (DUF4292)
Probab=44.04 E-value=32 Score=31.20 Aligned_cols=55 Identities=25% Similarity=0.354 Sum_probs=36.4
Q ss_pred ecCCeEEeec------cceeeEEeecceeeecCCCchh--HHHHHHHHHHhccCCCCCCCCchHHHHHHHHH
Q 020464 95 GREKAIVVSL------VQIRCIITADEVILMNSLDGCV--VQYYLELCKRLQTNKDQADDLPFEFRALELAL 158 (326)
Q Consensus 95 ~R~~aIlVNL------e~IRAIIt~D~VLlfd~~~~~v--~~fl~~L~~rL~~~~~~~~~LPFEfrALEa~L 158 (326)
.|+.+|-+++ +-.|++||.|+|.+.|..+-.. .. ...|+..+ +.|+-|..|+++|
T Consensus 32 ~kd~~I~is~~~~lGievar~~iTpd~v~~~d~~~k~y~~g~-~~~l~~~l--------g~~l~f~~lq~lL 94 (210)
T PF14125_consen 32 KKDSRIWISVTPFLGIEVARALITPDSVQFYDRLNKRYFVGD-FSYLSKLL--------GVDLDFYNLQNLL 94 (210)
T ss_pred ecCCEEEEEeccccCceEEEEEEcCceEEEEEccCCEEEecC-HHHHHHHh--------CCCcCHHHHHHHH
Confidence 4566777777 5679999999999999765321 11 12333222 3577788888887
No 11
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=43.80 E-value=1.5e+02 Score=25.59 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Q 020464 158 LELTCMSLDAQVKELGMEIYPVLDELASSIS 188 (326)
Q Consensus 158 L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is 188 (326)
|..+|+.+..++..+-..+..+=++|..+|+
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId 71 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRID 71 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444
No 12
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=34.39 E-value=2.8e+02 Score=25.16 Aligned_cols=126 Identities=16% Similarity=0.291 Sum_probs=67.8
Q ss_pred CCceeeecCCeEEeeccceeeEEeecceeeecCCCc------hhHH---------H--HHHHHHHhccCC-----CCCCC
Q 020464 89 YPSTILGREKAIVVSLVQIRCIITADEVILMNSLDG------CVVQ---------Y--YLELCKRLQTNK-----DQADD 146 (326)
Q Consensus 89 ~PssIl~R~~aIlVNLe~IRAIIt~D~VLlfd~~~~------~v~~---------f--l~~L~~rL~~~~-----~~~~~ 146 (326)
+| +|--.+. +|.|-++- +=+-++.++|.+..+ .+-. + +.-|+.-|-... .....
T Consensus 7 ~p-HiYkK~~--~~~lk~l~-~~~~~r~y~f~s~~~~i~~ii~h~NNlN~i~~r~~l~~~kl~sylGleKD~Se~~S~~K 82 (163)
T PF03233_consen 7 YP-HIYKKDQ--ILRLKPLN-VSSNDRRYVFSSVKGNIQSIINHCNNLNEIVGRNWLKLSKLLSYLGLEKDPSEGLSKSK 82 (163)
T ss_pred CC-ceeeccc--eEEecccc-cCCCCceEEeecCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccCCccccccCC
Confidence 45 5665533 34555544 667888899987543 1211 1 233444333221 23456
Q ss_pred CchH--HHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHhcCC--hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 020464 147 LPFE--FRALELALELT---CMSLDAQVKELGMEIYPVLDELASSIS--TLNLEHLRRLKGHLLALTQQVQKVHDEIEHL 219 (326)
Q Consensus 147 LPFE--frALEa~L~~v---~s~Le~e~~~le~~~~~~Ld~L~~~is--~~~Le~Lr~lK~~L~~l~~rv~~Vrd~Leel 219 (326)
.||| |+-++.+|... -+..-.++..|+..... +++|+..+- ..++.....++..+..|..+...||+.|..+
T Consensus 83 ~Pf~~~~k~~~~ifkegg~d~~k~~~~l~~L~e~snk-i~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 83 SPFESFFKDLSKIFKEGGGDKQKQLKLLPTLEEISNK-IRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred CcHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH-HHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8974 67777777666 33333344444443332 233322111 1124444557888888888888888887665
No 13
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=32.94 E-value=2.8e+02 Score=25.67 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC--ChhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020464 157 ALELTCMSLDAQVKELGMEIYPVLDELASSI--STLNLEHLRRLKGHLLALTQQVQKVHDEIE 217 (326)
Q Consensus 157 ~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~i--s~~~Le~Lr~lK~~L~~l~~rv~~Vrd~Le 217 (326)
-+...+-.||..+..+|.......+.|.... ++.-=++|-.+|++|..+..+|.++-..||
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777777777766555555554211 011112344455566666666655555554
No 14
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.22 E-value=3.5e+02 Score=23.68 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHhcCChhhHHH-HHHHHhHHHHHHHHHHHHHH
Q 020464 148 PFEFRALELALELTCMSLDAQVKELGMEIYPV---LDELASSISTLNLEH-LRRLKGHLLALTQQVQKVHD 214 (326)
Q Consensus 148 PFEfrALEa~L~~v~s~Le~e~~~le~~~~~~---Ld~L~~~is~~~Le~-Lr~lK~~L~~l~~rv~~Vrd 214 (326)
|=|+.+|+.= +..|..++..++..+..+ |..|.+..++..|.. +-.++..+..++.|++.++.
T Consensus 71 ~eel~~ld~e----i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAE----IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466666654 566666666666665555 445555666655443 34678888888888888876
No 15
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=31.38 E-value=2.5e+02 Score=21.88 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=9.0
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 020464 166 DAQVKELGMEIYPVLDELA 184 (326)
Q Consensus 166 e~e~~~le~~~~~~Ld~L~ 184 (326)
+..+..++..+.++..+..
T Consensus 32 ~~ti~~l~~~~~~i~~e~~ 50 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEIN 50 (90)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 4444444455555554443
No 16
>PF08970 Sda: Sporulation inhibitor A; InterPro: IPR015064 Members of this protein group contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilised by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A) []. ; PDB: 3FYR_B 1PV0_A.
Probab=31.19 E-value=40 Score=24.33 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 020464 304 EMLLEAYFVVVDN 316 (326)
Q Consensus 304 EmLLEaYf~qiD~ 316 (326)
|+|+|+|++.++-
T Consensus 7 e~LiesY~~A~el 19 (46)
T PF08970_consen 7 ELLIESYHKAIEL 19 (46)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 7899999997753
No 17
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.86 E-value=57 Score=29.62 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=29.1
Q ss_pred hHHHHHHHHhHHHHHHHHH---HHHHHHHHHhhCChhHHhhc
Q 020464 191 NLEHLRRLKGHLLALTQQV---QKVHDEIEHLMDDDGDMAAM 229 (326)
Q Consensus 191 ~Le~Lr~lK~~L~~l~~rv---~~Vrd~LeelLddDeDMa~M 229 (326)
.|.+|..++.+|..|.+.. -.+++.|+++|.|++.+..+
T Consensus 116 ~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~L 157 (169)
T COG3516 116 ELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQKL 157 (169)
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHHH
Confidence 4555666667777776654 45899999999999988765
No 18
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=30.76 E-value=3.6e+02 Score=23.41 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChh---hHHHHH-HHHhHHHHHHHHHHHHHHHHHHh
Q 020464 153 ALELALELTCMSLDAQVKELGMEIYPVLDELASSISTL---NLEHLR-RLKGHLLALTQQVQKVHDEIEHL 219 (326)
Q Consensus 153 ALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~---~Le~Lr-~lK~~L~~l~~rv~~Vrd~Leel 219 (326)
.+|.....+....+..+..+...+....+.|+..++.. -|.+|- +-++-+.+|..|+..+...|++|
T Consensus 58 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 58 KAEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666666666677776655443 233331 22556666666666666666654
No 19
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.51 E-value=1.3e+02 Score=22.58 Aligned_cols=23 Identities=13% Similarity=0.511 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhCChhHHhhcc
Q 020464 208 QVQKVHDEIEHLMDDDGDMAAMY 230 (326)
Q Consensus 208 rv~~Vrd~LeelLddDeDMa~My 230 (326)
..+.+++.++++=++=.|+-.||
T Consensus 22 en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 22 ENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=29.99 E-value=3.9e+02 Score=26.12 Aligned_cols=14 Identities=0% Similarity=0.085 Sum_probs=9.8
Q ss_pred echHhHHHhhCCCC
Q 020464 64 LDKTTIMRHCSLPA 77 (326)
Q Consensus 64 ~~K~~l~~~~gL~~ 77 (326)
++=.+|+...|++.
T Consensus 14 isL~~FL~~~~I~F 27 (325)
T PF08317_consen 14 ISLQDFLNMTGIRF 27 (325)
T ss_pred cCHHHHHHHhCcee
Confidence 45567777777776
No 21
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=29.10 E-value=2.9e+02 Score=24.53 Aligned_cols=14 Identities=7% Similarity=0.349 Sum_probs=10.4
Q ss_pred hHHHH-HHHHHHhcc
Q 020464 126 VVQYY-LELCKRLQT 139 (326)
Q Consensus 126 v~~fl-~~L~~rL~~ 139 (326)
...|+ .+|+.|++.
T Consensus 5 ~~~FVa~dLe~kIr~ 19 (149)
T PF10157_consen 5 MTHFVAEDLEEKIRL 19 (149)
T ss_pred chhhHHhhHHHHHHh
Confidence 34676 799999884
No 22
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=27.85 E-value=3.9e+02 Score=28.91 Aligned_cols=71 Identities=24% Similarity=0.268 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---cCChhhHHHHHHHHhHHHHHHHH----------HHHHHHHH
Q 020464 150 EFRALELALELTCMSLDAQVKELGMEIYPVLDELAS---SISTLNLEHLRRLKGHLLALTQQ----------VQKVHDEI 216 (326)
Q Consensus 150 EfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~---~is~~~Le~Lr~lK~~L~~l~~r----------v~~Vrd~L 216 (326)
|+.+||.+.++..-..+..+..+-..+..++.++++ .++... ..|..++..+..++++ -+++.++|
T Consensus 13 eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~-~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL 91 (701)
T PF09763_consen 13 ELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYD-VELNSVRDDIEYIESQNNGLQVQSANQKLLLNEL 91 (701)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHH
Confidence 667899999999888888888887777777665543 232211 1233344444444332 23366777
Q ss_pred HHhhC
Q 020464 217 EHLMD 221 (326)
Q Consensus 217 eelLd 221 (326)
++||+
T Consensus 92 ~~Ll~ 96 (701)
T PF09763_consen 92 ENLLD 96 (701)
T ss_pred HHHHH
Confidence 77765
No 23
>PF15205 PLAC9: Placenta-specific protein 9
Probab=27.43 E-value=1.8e+02 Score=22.92 Aligned_cols=32 Identities=38% Similarity=0.475 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Q 020464 152 RALELALELTCMSLDAQVKELGMEIYPVLDELASSI 187 (326)
Q Consensus 152 rALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~i 187 (326)
-++|--.+.++.+||+|++.| ..+|++|.-++
T Consensus 28 dviEe~veKTVEhLeaEvk~L----Lg~leelawnl 59 (74)
T PF15205_consen 28 DVIEETVEKTVEHLEAEVKGL----LGLLEELAWNL 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccC
Confidence 577888888888888888766 34466665554
No 24
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=26.78 E-value=1.3e+02 Score=23.72 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=22.1
Q ss_pred CChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChh
Q 020464 187 ISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDG 224 (326)
Q Consensus 187 is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddDe 224 (326)
.+....+.|-.+-.+..++++|| ++||.|||+|+
T Consensus 36 ls~~d~~~L~~L~~~a~rm~eRI----~tLE~ILd~e~ 69 (75)
T TIGR02976 36 LSTDDQALLQELYAKADRLEERI----DTLERILDAEH 69 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 45555555555666666666666 47888998764
No 25
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=25.64 E-value=1.9e+02 Score=24.70 Aligned_cols=61 Identities=11% Similarity=0.265 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChhHHhhc
Q 020464 157 ALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAM 229 (326)
Q Consensus 157 ~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddDeDMa~M 229 (326)
.|..+...-..++..+|..+...++.|...-....|. .-.+ +..++.|..||+||..+..+
T Consensus 21 ML~aA~~g~Wd~Li~lE~~y~~~Ve~l~~~~~~~~l~----------~~~q--~~~~~lL~~IL~nda~Ir~L 81 (121)
T PRK10548 21 MLRLATEGQWDELIEQEVAYVQAVEEIAHLTIPPDIS----------TVMQ--EQLRPMLRQILDNEAELKQL 81 (121)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCCCCC----------HHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677888888888888775431111110 0000 12446677778888777654
No 26
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.44 E-value=3.8e+02 Score=26.04 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=43.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHhcCChhhHHHHHHHHhHHHHHH
Q 020464 145 DDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLD---ELASSISTLNLEHLRRLKGHLLALT 206 (326)
Q Consensus 145 ~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld---~L~~~is~~~Le~Lr~lK~~L~~l~ 206 (326)
-.-|+|.--+|-++..++..+..++..++..+.++-. .|+.+|...+. .|-+.++||..++
T Consensus 154 ~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~-ELER~qKRL~sLq 217 (267)
T PF10234_consen 154 LARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQ-ELERNQKRLQSLQ 217 (267)
T ss_pred HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3469999999999999999999999988888766533 35555654432 2334555665554
No 27
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=23.78 E-value=4.3e+02 Score=26.03 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=35.7
Q ss_pred HHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChhHHhhccccccc
Q 020464 170 KELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKK 235 (326)
Q Consensus 170 ~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddDeDMa~MyLT~k~ 235 (326)
..|+.++..+...+. .|+-..+.+|..+.+|+..++.-|+.|=....-+ .+|-+.|.
T Consensus 28 ~~L~~v~~diF~rI~--------~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi-~vfs~aky 84 (297)
T PF11945_consen 28 EYLDKVSNDIFSRIS--------ARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAI-TVFSPAKY 84 (297)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccE-EEeCcccC
Confidence 344555555555443 3456677888888888888888888886665432 34444444
No 28
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.40 E-value=2.8e+02 Score=32.04 Aligned_cols=80 Identities=28% Similarity=0.453 Sum_probs=57.6
Q ss_pred CCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC
Q 020464 143 QADDLPFEFRAL-ELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMD 221 (326)
Q Consensus 143 ~~~~LPFEfrAL-Ea~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLd 221 (326)
....-||-.++= +-.|...|..+++..+.|+.. |+. +.+.++++++.|..++.+..+.|.+++++|+
T Consensus 159 ~~~~sp~~~~~~~~~hL~velAdle~kir~LrqE-------lEE-----K~enll~lr~eLddleae~~klrqe~~e~l~ 226 (1195)
T KOG4643|consen 159 ELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQE-------LEE-----KFENLLRLRNELDDLEAEISKLRQEIEEFLD 226 (1195)
T ss_pred CCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHH-------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678766653 345666777777777777665 433 3367888999999999999999999999997
Q ss_pred ChhHHhhccccccc
Q 020464 222 DDGDMAAMYLTEKK 235 (326)
Q Consensus 222 dDeDMa~MyLT~k~ 235 (326)
+-. =+.||--+-.
T Consensus 227 ea~-ra~~yrdeld 239 (1195)
T KOG4643|consen 227 EAH-RADRYRDELD 239 (1195)
T ss_pred HHH-hhhhhhhHHH
Confidence 544 4566665533
No 29
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.20 E-value=3.8e+02 Score=26.48 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=32.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHhcCChhhH
Q 020464 145 DDLPFEFRALELALELTCMSLDAQVKELGMEIYPV---LDELASSISTLNL 192 (326)
Q Consensus 145 ~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~---Ld~L~~~is~~~L 192 (326)
..-|.|+--.|-+|.+++.....++........++ ...|..+|.++++
T Consensus 97 a~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ 147 (338)
T KOG3647|consen 97 AQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKA 147 (338)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44588888888888888887777776655544443 4567777776543
No 30
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.66 E-value=5.9e+02 Score=23.22 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhccCC---------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020464 127 VQYYLELCKRLQTNK---------DQADDLPFEFRALELALELTCMSLDAQVKELGMEIY 177 (326)
Q Consensus 127 ~~fl~~L~~rL~~~~---------~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~ 177 (326)
.+|+....+||+..- .....|-.-|.=|...-..+-+.|+.|++.++..+.
T Consensus 78 ~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~ 137 (171)
T PF04799_consen 78 RQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQ 137 (171)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888876421 122345666677777777777777777777666533
No 31
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=22.57 E-value=99 Score=32.19 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChhHHhhcccc
Q 020464 153 ALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLT 232 (326)
Q Consensus 153 ALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddDeDMa~MyLT 232 (326)
-|||+-..+...+=.++..|.+.|..|.-||-.....-+ .|+-.|..|+.+|.-+|..+--..||+==+|-.|..-+=+
T Consensus 25 ELecvtN~TLaniIRQLsSLSKhAEdIFGELf~da~~f~-~R~NSLQ~RIDRL~vkVtqLDs~~eevsLqdinmrKAFkS 103 (518)
T KOG1830|consen 25 ELECVTNITLANIIRQLSSLSKHAEDIFGELFNDANNFN-HRANSLQERIDRLAVKVTQLDSTVEEVSLQDINMRKAFKS 103 (518)
T ss_pred ceeeecchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHhhhhhccCCcccccccchhHHHhhhhh
Confidence 378888888888888999999999999999976543322 3455567777777777777766667777777777766665
Q ss_pred cccccC
Q 020464 233 EKKQRL 238 (326)
Q Consensus 233 ~k~~~~ 238 (326)
.+...+
T Consensus 104 StvqDQ 109 (518)
T KOG1830|consen 104 STVQDQ 109 (518)
T ss_pred hhhhhh
Confidence 555433
No 32
>PHA02047 phage lambda Rz1-like protein
Probab=22.18 E-value=3.6e+02 Score=22.53 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=25.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhCChh
Q 020464 195 LRRLKGHLLALTQQVQKVHDEIEHLMDDDG 224 (326)
Q Consensus 195 Lr~lK~~L~~l~~rv~~Vrd~LeelLddDe 224 (326)
+..+.+....+++|..+.+++|..-|++..
T Consensus 50 ~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 50 YATLQRHVQAVEARTNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456788889999999999999999988654
No 33
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=21.86 E-value=7e+02 Score=24.19 Aligned_cols=88 Identities=24% Similarity=0.304 Sum_probs=64.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCChhH
Q 020464 147 LPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKG-HLLALTQQVQKVHDEIEHLMDDDGD 225 (326)
Q Consensus 147 LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~-~L~~l~~rv~~Vrd~LeelLddDeD 225 (326)
+=-|+...|--...-++.|+.++..++..+..+-++|.. ++|.+ +.=-++|. ++..+...++.+++.-.+=||+=..
T Consensus 68 ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~-L~TYk-D~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e 145 (258)
T PF15397_consen 68 AKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNF-LSTYK-DHEYPVKAVQIANLVRQLQQLKDSQQDELDELNE 145 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999998888777643 11111 00113555 7788888888898888888888788
Q ss_pred Hhhcccccccc
Q 020464 226 MAAMYLTEKKQ 236 (326)
Q Consensus 226 Ma~MyLT~k~~ 236 (326)
|..+-+.....
T Consensus 146 ~~~~el~~l~~ 156 (258)
T PF15397_consen 146 MRQMELASLSR 156 (258)
T ss_pred HHHHHHHHHHH
Confidence 87777665443
No 34
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.32 E-value=6.3e+02 Score=23.04 Aligned_cols=69 Identities=16% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHhcCCh--hhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 020464 151 FRALELALELTCM-----SLDAQVKELGMEIYPVLDELASSIST--LNLEHLRRLKGHLLALTQQVQKVHDEIEHL 219 (326)
Q Consensus 151 frALEa~L~~v~s-----~Le~e~~~le~~~~~~Ld~L~~~is~--~~Le~Lr~lK~~L~~l~~rv~~Vrd~Leel 219 (326)
+|..-..-.+-|+ .|..-...|...+.....+|+..|.. ..++++-.+.+++..|.+|+.-+...|+.+
T Consensus 88 Lr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 88 LRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 23333445666666666666665543 234555556666666677776666666543
No 35
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.19 E-value=1.9e+02 Score=22.83 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=22.6
Q ss_pred cCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChh
Q 020464 186 SISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDG 224 (326)
Q Consensus 186 ~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddDe 224 (326)
.++....+.|-.+-.+...++.||+ +||.|||.|.
T Consensus 35 gLs~~d~~~L~~L~~~a~rm~eRI~----tLE~ILdae~ 69 (75)
T PF06667_consen 35 GLSEEDEQRLQELYEQAERMEERIE----TLERILDAEH 69 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence 3555555556666666666666664 7888887653
No 36
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=21.17 E-value=4e+02 Score=20.71 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 020464 150 EFRALELALELTCMSLDAQVKELGMEIYP--VLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHL 219 (326)
Q Consensus 150 EfrALEa~L~~v~s~Le~e~~~le~~~~~--~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~Leel 219 (326)
|.+.=-..|...+..+..++..+...-.. .++ +.. -..+|..+|+++..+..+++.+++-+..|
T Consensus 25 el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~-----~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 25 ELRQSQEELLQQIDRLNEKLKELNEVEQINEPFD-----LDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555566666665554442111 111 111 35667888999999999999988877654
No 37
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.90 E-value=7e+02 Score=24.96 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=23.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhC
Q 020464 193 EHLRRLKGHLLALTQQVQKVHDEIEHLMD 221 (326)
Q Consensus 193 e~Lr~lK~~L~~l~~rv~~Vrd~LeelLd 221 (326)
..|..+-++|.+|+.+++.++.+|.++-.
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566778999999999999999988754
No 38
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=20.39 E-value=5.2e+02 Score=21.71 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 020464 193 EHLRRLKGHLLALTQQVQKVHD 214 (326)
Q Consensus 193 e~Lr~lK~~L~~l~~rv~~Vrd 214 (326)
+.+..|+.++.+|+.++..+..
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4556667777777777776543
No 39
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.22 E-value=4.4e+02 Score=20.75 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=23.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChhHHh
Q 020464 191 NLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMA 227 (326)
Q Consensus 191 ~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddDeDMa 227 (326)
++..|...+..+..-..++....+.++++|+..++..
T Consensus 73 ~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e 109 (127)
T smart00502 73 KLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTE 109 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 4444555556666666667777778888887655443
No 40
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.04 E-value=3.1e+02 Score=25.19 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.0
Q ss_pred CCCchHHHHHHHHHHHHHH
Q 020464 145 DDLPFEFRALELALELTCM 163 (326)
Q Consensus 145 ~~LPFEfrALEa~L~~v~s 163 (326)
..-||.|-|..++-+.+-.
T Consensus 50 t~~Py~flA~~g~~dll~~ 68 (183)
T PF10274_consen 50 TEHPYRFLARQGIKDLLER 68 (183)
T ss_pred cCccHHHHHHHHHHHHHHh
Confidence 4569999999998776655
Done!