Query 020464
Match_columns 326
No_of_seqs 187 out of 329
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 6E-66 2.1E-70 484.1 28.6 222 43-325 11-240 (261)
2 3nvo_A Zinc transport protein 94.1 1.5 5.2E-05 39.2 14.8 160 47-223 41-217 (264)
3 4ev6_A Magnesium transport pro 91.4 4.2 0.00014 38.2 14.3 150 66-222 63-226 (339)
4 2iub_A CORA, divalent cation t 89.4 4.9 0.00017 38.1 13.0 115 104-223 136-251 (363)
5 4egw_A Magnesium transport pro 88.8 12 0.0004 33.9 14.7 164 47-222 49-226 (280)
6 2bbh_A Divalent cation transpo 86.2 4.2 0.00014 36.4 9.8 111 105-223 128-242 (269)
7 3ck6_A Putative membrane trans 85.7 5.5 0.00019 35.3 10.3 155 49-223 32-201 (252)
8 3swf_A CGMP-gated cation chann 82.2 4.7 0.00016 30.8 7.0 50 158-215 5-54 (74)
9 2hn1_A CORA, magnesium and cob 73.2 21 0.00072 31.8 9.9 165 47-223 66-242 (266)
10 3swy_A Cyclic nucleotide-gated 65.7 15 0.00051 25.5 5.5 44 158-209 3-46 (46)
11 3p8c_D Wiskott-aldrich syndrom 51.1 36 0.0012 31.9 7.1 57 153-210 25-81 (279)
12 3v86_A De novo design helix; c 35.0 70 0.0024 19.3 4.1 24 196-219 3-26 (27)
13 2k8h_A Small ubiquitin protein 34.9 1.1E+02 0.0039 24.2 6.9 38 47-84 26-71 (110)
14 3fyr_A Sporulation inhibitor S 33.1 23 0.00077 24.8 2.0 12 304-315 9-20 (48)
15 3zcc_A HAMP, osmolarity sensor 32.6 1.3E+02 0.0044 21.5 6.5 73 148-220 36-111 (114)
16 3ljm_A Coil Ser L9C; de novo d 29.7 83 0.0028 19.5 3.9 18 158-175 6-23 (31)
17 1skv_A ORF D-63, hypothetical 29.0 1.8E+02 0.0061 21.6 9.0 50 155-204 4-54 (69)
18 3hhm_B NISH2 P85alpha; PI3KCA, 23.3 4E+02 0.014 25.5 9.7 65 152-217 161-229 (373)
19 3mq9_A Bone marrow stromal ant 22.7 2.5E+02 0.0084 26.8 8.1 22 197-218 447-468 (471)
20 3r2p_A Apolipoprotein A-I; amp 22.4 3.5E+02 0.012 22.8 8.6 34 154-187 98-131 (185)
21 3szr_A Interferon-induced GTP- 22.1 3.2E+02 0.011 27.4 9.2 79 149-231 424-507 (608)
22 3htk_A Structural maintenance 22.1 2E+02 0.0068 19.8 7.4 27 193-219 26-52 (60)
23 1txp_A HnRNP C, heterogeneous 21.4 1.1E+02 0.0036 19.1 3.3 23 197-219 3-25 (28)
24 3s4r_A Vimentin; alpha-helix, 20.2 3E+02 0.01 21.1 8.3 31 196-226 59-89 (93)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-66 Score=484.06 Aligned_cols=222 Identities=26% Similarity=0.385 Sum_probs=205.2
Q ss_pred CCCc-ceEEEEEcCCCCeEEEe--echHhHHHhhCCCCCcccCcCCCC-CCCceeeecCCeEEeeccceeeEEeecceee
Q 020464 43 RGHA-SRSWIKIDQDGNFEILE--LDKTTIMRHCSLPARDLRLLDPLF-IYPSTILGREKAIVVSLVQIRCIITADEVIL 118 (326)
Q Consensus 43 ~~~~-~~~~~~~D~~G~~~~~e--~~K~~l~~~~gL~~RDLR~lDp~~-~~PssIl~R~~aIlVNLe~IRAIIt~D~VLl 118 (326)
+... .-+|++||++|+++.++ ++|++||+++||+|||||+|||.+ +.+|+|++|++||||||+|||||||+|+|+|
T Consensus 11 ~~~~~~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vll 90 (261)
T 3rkg_A 11 ASDSLFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYV 90 (261)
T ss_dssp CGGGGEEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEE
T ss_pred CCCCceEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEE
Confidence 3334 78999999999999986 999999999999999999999985 3445799999999999999999999999999
Q ss_pred ecCCCchhH----HHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHH
Q 020464 119 MNSLDGCVV----QYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEH 194 (326)
Q Consensus 119 fd~~~~~v~----~fl~~L~~rL~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~ 194 (326)
||+.++.+. .|+++|+.||..+ ..+++|||||||||||++||+.|+++++.+++.++++|++|+++|++.+|++
T Consensus 91 fd~~~~~~~~~~~~f~~~l~~~l~~~--~~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~ 168 (261)
T 3rkg_A 91 FDTTNPSAAAKLSVLMYDLESKLSST--KNNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRH 168 (261)
T ss_dssp ECCSCHHHHHHHHHHHHHHHHHHHCS--SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred EcCCCchhhhhHHHHHHHHHHHhccC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999998765 5999999999875 3568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhCChhHHhhcccccccccCCCCCCCCcccccccccccccCCCCCCCCCCcchhhh
Q 020464 195 LRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQK 274 (326)
Q Consensus 195 Lr~lK~~L~~l~~rv~~Vrd~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 274 (326)
|+..|++|++|.+||++||++|+++||||+||++||||+|+.
T Consensus 169 Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~-------------------------------------- 210 (261)
T 3rkg_A 169 LLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS-------------------------------------- 210 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC--------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC--------------------------------------
Confidence 999999999999999999999999999999999999999842
Q ss_pred hhhhhccccccCCCCccccCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcc
Q 020464 275 LQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSVR 325 (326)
Q Consensus 275 ~~~~~~~~~~s~~~~~~~~~~~~~dvEElEmLLEaYf~qiD~~~nkl~~Lr 325 (326)
..+++||+|||||+||+|||+++|++.+|+
T Consensus 211 ---------------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~ 240 (261)
T 3rkg_A 211 ---------------------PKDNFSDLEMLIETYYTQCDEYVQQSESLI 240 (261)
T ss_dssp ---------------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134889999999999999999999999875
No 2
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=94.05 E-value=1.5 Score=39.23 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=101.3
Q ss_pred ceEEEEEcCCCCeEEEeechHhHHHhhCCCCCcccCcCCCCCCCceeeecCCeEE--------------eeccceeeEEe
Q 020464 47 SRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIV--------------VSLVQIRCIIT 112 (326)
Q Consensus 47 ~~~~~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR~lDp~~~~PssIl~R~~aIl--------------VNLe~IRAIIt 112 (326)
...|+-++..-. -....|.+.+||++=-+.-+--....| .+-.=++.++ +...+|..+++
T Consensus 41 ~~~Wi~l~~p~~-----~e~~~l~~~~~l~~l~~ed~~~~~~rp-k~e~~~~~~fivl~~~~~~~~~~~~~~~~v~~~l~ 114 (264)
T 3nvo_A 41 HPCWLHLNYTHP-----DSARWLASTPLLPNNVRDALAGESSRP-RVSRMGEGTLITLRCINGSTDERPDQLVAMRLYMD 114 (264)
T ss_dssp SCEEEEEETTSH-----HHHHHHHHCTTSCTTTHHHHTTCCCSC-EEEEETTEEEEEEECC----------CCEEEEEEC
T ss_pred CCEEEEeCCCCH-----HHHHHHHhccCCCHHHHHHHhCCCCCC-ceEEECCEEEEEEEecccCCCCCCcceEEEEEEEe
Confidence 467888864211 135567888999987666332221222 2333333332 34567888888
Q ss_pred ecceeeecCCCchhHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC---Ch
Q 020464 113 ADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSI---ST 189 (326)
Q Consensus 113 ~D~VLlfd~~~~~v~~fl~~L~~rL~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~i---s~ 189 (326)
.+.|+-|.... ..++..+.+|+..+.+. .-|. .+|-++|..++..+-.-+..++.. +++|++.+ ..
T Consensus 115 ~~~lITv~~~~---~~~~~~v~~rl~~~~~~--~~~~--~ll~~lld~ivd~y~~~l~~l~~~----id~lE~~l~~~~~ 183 (264)
T 3nvo_A 115 ERFIVSTRQRK---VLALDDVVSDLQEGTGP--VDCG--GWLVDVCDALTDHASEFIEELHDK----IIDLEDNLLDQQI 183 (264)
T ss_dssp SSEEEEEESSC---CHHHHHHHHHHHTTCSC--SSHH--HHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTC----CC
T ss_pred CCEEEEEecCC---cCcHHHHHHHHHhCCCC--CCHH--HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCc
Confidence 88888776432 25566677777653221 2233 457777777777776666666665 44444433 34
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCh
Q 020464 190 LNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDD 223 (326)
Q Consensus 190 ~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddD 223 (326)
..+.++-.+|+.|..|..-+.-.++++..|...+
T Consensus 184 ~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 184 PPRGFLALLRKQLIVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 5688899999999999999999999999998764
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=91.35 E-value=4.2 Score=38.17 Aligned_cols=150 Identities=16% Similarity=0.129 Sum_probs=89.8
Q ss_pred hHhHHHhhCCCCCcccC-cCCCCCCCceeeecCCeEE-----------eeccceeeEEeecceeeecCCCchhHHHHHHH
Q 020464 66 KTTIMRHCSLPARDLRL-LDPLFIYPSTILGREKAIV-----------VSLVQIRCIITADEVILMNSLDGCVVQYYLEL 133 (326)
Q Consensus 66 K~~l~~~~gL~~RDLR~-lDp~~~~PssIl~R~~aIl-----------VNLe~IRAIIt~D~VLlfd~~~~~v~~fl~~L 133 (326)
...|.+.+||++=.+.- +|+.- .| .+-.-++.++ +...+|..+++.+.++-|..... +.+..+
T Consensus 63 ~~~l~~~~~l~~~~~ed~l~~~~-rp-k~e~~~~~~~iv~~~~~~~~~~~~~~v~i~l~~~~lITv~~~~~---~~~~~~ 137 (339)
T 4ev6_A 63 LYKLSKKIGISVSDLQIGLDEQE-IP-RVEEDEDFYLIIYKAPLFEEDITTTSLGIYIKNNLLLTIHSDKI---KAIGRL 137 (339)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC-CC-EEEEETTEEEEECCCCCCTTTCCCCCCEEEEETTEEEEEESSCC---HHHHHH
T ss_pred HHHHHHHHCcCHhHHHHhhCCcc-CC-eEEEECCEEEEEEecCccCCCcceEEEEEEEECCeeEEeecCCc---chhHHH
Confidence 45688899999865552 33321 11 2222222222 23456777888887777754332 456677
Q ss_pred HHHhccCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHH
Q 020464 134 CKRLQTNKDQA--DDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQK 211 (326)
Q Consensus 134 ~~rL~~~~~~~--~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~ 211 (326)
.+++....+.. ..-|- .+|-++|..++..+..-+..++..+..+=+.+-.+.+...++++..+|+.+..+..-+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~--~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~~ 215 (339)
T 4ev6_A 138 HKLISTKKPRIVFERGIG--FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIA 215 (339)
T ss_dssp HHHSSSSSSCCCCCSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccccccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 77776532211 11122 245566777777666666666665333222232334556788999999999999999999
Q ss_pred HHHHHHHhhCC
Q 020464 212 VHDEIEHLMDD 222 (326)
Q Consensus 212 Vrd~LeelLdd 222 (326)
.++++..+...
T Consensus 216 ~~~vl~~L~~~ 226 (339)
T 4ev6_A 216 NRDVLVLLKRK 226 (339)
T ss_dssp HHHHHHHHHHS
T ss_pred hHHHHHHHhhc
Confidence 99998877643
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=89.37 E-value=4.9 Score=38.14 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=68.8
Q ss_pred ccceeeEEeecceeeecCCCchhHHHHHHHHHHhccCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020464 104 LVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQA-DDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDE 182 (326)
Q Consensus 104 Le~IRAIIt~D~VLlfd~~~~~v~~fl~~L~~rL~~~~~~~-~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~ 182 (326)
.+.|-.+++.+.|+-|..... +.+..+.+|+..+.+.. ..-|.. +|-++|..++..+-.-+..++..+..+=++
T Consensus 136 ~~~v~~~l~~~~liTv~~~~~---~~~~~v~~rl~~~~~~~~~~~~~~--ll~~lld~ivd~y~~~l~~l~~~id~lE~~ 210 (363)
T 2iub_A 136 SEQVSLILTKNCVLMFQEKIG---DVFDPVRERIRYNRGIIRKKRADY--LLYSLIDALVDDYFVLLEKIDDEIDVLEEE 210 (363)
T ss_dssp EEEEEEEEETTEEEEEESSSC---CSCHHHHHHHHTTCTTTTTSCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEECCEEEEEEeCCC---chHHHHHHHHHhcCCccccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777665654331 23344455554321111 111222 455566666666666666666553333333
Q ss_pred HHhcCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCh
Q 020464 183 LASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDD 223 (326)
Q Consensus 183 L~~~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddD 223 (326)
+-++-+...++++..+|+.+..+..-+...+++|..+...+
T Consensus 211 v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 251 (363)
T 2iub_A 211 VLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 251 (363)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333346689999999999999999999999999998653
No 5
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=88.84 E-value=12 Score=33.93 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCeEEEeechHhHHHhhCCCCCcccC-cCCCCCCCceeeecCCeEE-----------eeccceeeEEeec
Q 020464 47 SRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRL-LDPLFIYPSTILGREKAIV-----------VSLVQIRCIITAD 114 (326)
Q Consensus 47 ~~~~~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR~-lDp~~~~PssIl~R~~aIl-----------VNLe~IRAIIt~D 114 (326)
.+-|+-+..-- . -....|.+.+||+|=.+.- +++.- .| -+-.=++.++ +...+|..+++.+
T Consensus 49 ~~vWIdl~~Pt---~--eEl~~l~~~f~lh~l~leD~l~~~~-rp-Kie~~~d~~fivl~~~~~~~~~~t~~v~i~l~~~ 121 (280)
T 4egw_A 49 RLIWIDCYDPK---D--EELYKLSKKIGISVSDLQIGLDEQE-IP-RVEEDEDFYLIIYKAPLFEEDITTTSLGIYIKNN 121 (280)
T ss_dssp SCEEEEEESCC---H--HHHHHHHHHHTCCHHHHHHHTCTTC-CC-EEECCSSSEEEEEEEEECSSSCEEEEEEEEEETT
T ss_pred eEEEEEeCCCC---H--HHHHHHHHHHCcCHHHHHHHhCccc-Cc-eEEEECCEEEEEEEeccccccceeeeEEEEEECC
Confidence 45677664221 1 1245688899999876652 34321 11 1221112111 2234577788888
Q ss_pred ceeeecCCCchhHHHHHHHHHHhccCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhH
Q 020464 115 EVILMNSLDGCVVQYYLELCKRLQTNKDQA--DDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNL 192 (326)
Q Consensus 115 ~VLlfd~~~~~v~~fl~~L~~rL~~~~~~~--~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~L 192 (326)
.|+-|..... +.+..+..++....+.. ..-|- -+|=++|..++..+-.-+..++..+..+=+.+-.+.+...+
T Consensus 122 ~lITv~~~~~---~~~~~v~~~l~~~~~~~~~~~g~~--~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~~~~l 196 (280)
T 4egw_A 122 LLLTIHSDKI---KAIGRLHKLISTKKPRIVFERGIG--FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVM 196 (280)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHSCCSSSCTTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred EEEEEecCCc---chHHHHHHHHHhcCcccccccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 7777754332 34455666665432110 11121 13444555555555555555555543333334445566789
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhCC
Q 020464 193 EHLRRLKGHLLALTQQVQKVHDEIEHLMDD 222 (326)
Q Consensus 193 e~Lr~lK~~L~~l~~rv~~Vrd~LeelLdd 222 (326)
.++..+|+.|..|..-+.-.|+++..|...
T Consensus 197 ~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~ 226 (280)
T 4egw_A 197 EKILGLRKTLVYFHKSLIANRDVLVLLKRK 226 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 999999999999999999999999988653
No 6
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=86.17 E-value=4.2 Score=36.44 Aligned_cols=111 Identities=15% Similarity=0.248 Sum_probs=64.1
Q ss_pred cceeeEEeecceeeecCCCchhHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020464 105 VQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELA 184 (326)
Q Consensus 105 e~IRAIIt~D~VLlfd~~~~~v~~fl~~L~~rL~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~ 184 (326)
+.|-.+++.+.|+-|..... ..+..+.+|+....+......-++ +|-++|..++..+-.-+..++.. +++|+
T Consensus 128 ~~v~~~l~~~~lITv~~~~~---~~~~~v~~rl~~~~~~~~~~~~~~-ll~~lld~ivd~y~~~l~~i~~~----id~lE 199 (269)
T 2bbh_A 128 EQVSLILTKNCVLMFQEKIG---DVFDPVRERIRYNRGIIRKKRADY-LLYSLIDALVDDYFVLLEKIDDE----IDVLE 199 (269)
T ss_dssp EEEEEEEETTEEEEEESSSC---CSCHHHHHHHHTTCTTGGGSCHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred EEEEEEEECCEEEEEECCCC---CcHHHHHHHHHhcCCchhhCCHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 34556777777766643322 223344455544211100111221 33455555555555555555544 44455
Q ss_pred hcC----ChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCh
Q 020464 185 SSI----STLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDD 223 (326)
Q Consensus 185 ~~i----s~~~Le~Lr~lK~~L~~l~~rv~~Vrd~LeelLddD 223 (326)
+.+ +...+.++-.+|+.+..|..-+.-.+++|..|+..+
T Consensus 200 ~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 200 EEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 443 235688999999999999999999999999998754
No 7
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=85.72 E-value=5.5 Score=35.31 Aligned_cols=155 Identities=12% Similarity=0.137 Sum_probs=92.1
Q ss_pred EEEEEcCCCCeEEEeechHhHHHhhCCCCCcccCcCCCCCCCceeeecCC-eE--Eeec------------cceeeEEee
Q 020464 49 SWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREK-AI--VVSL------------VQIRCIITA 113 (326)
Q Consensus 49 ~~~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR~lDp~~~~PssIl~R~~-aI--lVNL------------e~IRAIIt~ 113 (326)
.|+-++.... -....|.+. ||++=-+.-+--....| .+-.=++ .+ +++. ..+..+++.
T Consensus 32 ~Wi~l~~p~~-----~e~~~l~~~-~l~~l~~ed~l~~~~rp-k~e~~~d~~lfivl~~~~~~~~~~~~~~~~l~i~l~~ 104 (252)
T 3ck6_A 32 HWYHCERLHP-----DIRGWLEDN-HVPRATVDHLLADESRP-SFHPLDDDNFMLILRGINMNENASPEDMLSIRILYFQ 104 (252)
T ss_dssp EEEEEETTCT-----THHHHHHHT-TCCHHHHHHHHCSSCCC-EEEECSTTCEEEEEEECCCSTTCCTTSCEEEEEEEET
T ss_pred EEEEecCCCH-----HHHHHHHHc-CCCHHHHHHHhCCCCCC-ceEEeCCceEEEEEecCccCCCCCcccEEEEEEEEeC
Confidence 7888865331 124456666 88865443221111122 4444444 44 2222 234557777
Q ss_pred cceeeecCCCchhHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHH
Q 020464 114 DEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLE 193 (326)
Q Consensus 114 D~VLlfd~~~~~v~~fl~~L~~rL~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le 193 (326)
+.|+=+-.... ..+..+..++..+.+ ..-|.. .|-++|..++..+-.-+..++.. +++|++. ...+.
T Consensus 105 ~~lITvr~~~~---~~~~~v~~~l~~~~~--~~~~~~--ll~~lld~ivd~y~~~l~~l~~~----id~lE~~--~~~~~ 171 (252)
T 3ck6_A 105 GALISTRKIPS---RAIMEIRQALAEHKG--PKSLAS--LLNQIIEGLNGKIDLYLDTIEET----LNEFDVN--DESTY 171 (252)
T ss_dssp TEEEEEESSCC---HHHHHHHHHHHTTCS--CSSHHH--HHHHHHHHHHHHHHHHHHHHHHH----HHTCCTT--CGGGC
T ss_pred CEEEEEeCCCc---chHHHHHHHHHhCCC--CCCHHH--HHHHHHHHHHHHHHHHHHHHHHH----HHHHHcC--chHHH
Confidence 77776654332 445556666644321 123444 34477777777666655555554 5666655 34577
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhCCh
Q 020464 194 HLRRLKGHLLALTQQVQKVHDEIEHLMDDD 223 (326)
Q Consensus 194 ~Lr~lK~~L~~l~~rv~~Vrd~LeelLddD 223 (326)
++..+|+.+..|..-+...|+++..|+..+
T Consensus 172 ~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~ 201 (252)
T 3ck6_A 172 NHIAAQKALISIKRFIRPQQYAIRDLIESE 201 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888999999999999999999999998654
No 8
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=82.25 E-value=4.7 Score=30.76 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 020464 158 LELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDE 215 (326)
Q Consensus 158 L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~~Vrd~ 215 (326)
|+.-+..||+-+..|++....+|.+.++. =..||+|++.++.+++.+++.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ss--------Q~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESM--------QQKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccCCC
Confidence 45667888888888999888888887662 145899999999998875544
No 9
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=73.19 E-value=21 Score=31.78 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=91.3
Q ss_pred ceEEEEEcCCCCeEEEeechHhHHHhhCCCCCcccC-cCCCCCCCceeeecCCeE--E---------eeccceeeEEeec
Q 020464 47 SRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRL-LDPLFIYPSTILGREKAI--V---------VSLVQIRCIITAD 114 (326)
Q Consensus 47 ~~~~~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR~-lDp~~~~PssIl~R~~aI--l---------VNLe~IRAIIt~D 114 (326)
...|+-++...+.. ....|.+.+||++=-+-- +++. . .|.+-.=++++ + +..+.|-.+++.+
T Consensus 66 ~~~Wi~l~~p~~~~----e~~~l~~~f~l~~l~~ed~l~~~-~-rpk~e~~~d~lfivl~~~~~~~~~~~~~v~~~l~~~ 139 (266)
T 2hn1_A 66 KKLWIDVVGVHDES----LIAKICEFLGIHPLAAEDILNTA-Q-RVKIEDYDDHLFLVLKILLYNETLEIDQLSLVLKKN 139 (266)
T ss_dssp SEEEEEECCCCCHH----HHHHHHHTTTCCHHHHHHHHBTT-C-CSEEEECSSEEEEEEEEEEESSSEEEEEEEEEEETT
T ss_pred CeEEEEeCCCCCHH----HHHHHHHHcCCCHhHHHHHhCCC-C-CCeEEEECCEEEEEEEeccccCccceEEEEEEEECC
Confidence 36687776432222 345677788888743332 2221 1 12233333333 1 2234566677777
Q ss_pred ceeeecCCCchhHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHH
Q 020464 115 EVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEH 194 (326)
Q Consensus 115 ~VLlfd~~~~~v~~fl~~L~~rL~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~ 194 (326)
.|+-|..... ..+..+.+|+..+......-|. -+|-++|..++..+-.-+..++..+..+=+.+-++-+ ..+++
T Consensus 140 ~lITv~~~~~---~~~~~v~~rl~~~~~~~~~~~~--~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-~~l~~ 213 (266)
T 2hn1_A 140 LVATFEEREY---WILDSIRSRLKSGGRMRKLAGD--YLAYTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS-TLIGK 213 (266)
T ss_dssp EEEEEESSSS---CSTHHHHHHHHSSSHHHHSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCH
T ss_pred EEEEEEcCCC---ChHHHHHHHHHhCCchhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHHH
Confidence 7766644322 2224445555432000001121 2445666666666666666666664444444433334 66888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhCCh
Q 020464 195 LRRLKGHLLALTQQVQKVHDEIEHLMDDD 223 (326)
Q Consensus 195 Lr~lK~~L~~l~~rv~~Vrd~LeelLddD 223 (326)
+-.+|+.+..|..-+.-.+++|..|+..+
T Consensus 214 l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (266)
T 2hn1_A 214 IHSLKREILAFRNAVWPLRDVLSFFTRVE 242 (266)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998653
No 10
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=65.71 E-value=15 Score=25.50 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHH
Q 020464 158 LELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQV 209 (326)
Q Consensus 158 L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv 209 (326)
++.-+..||+-+..|++....+|.+.++. =..+|+|++.++.+|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ss--------q~KlKqRit~lE~~v 46 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNAT--------QMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcC
Confidence 45667888888888888888888887652 145888998888764
No 11
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=51.08 E-value=36 Score=31.89 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHHHHHHhHHHHHHHHHH
Q 020464 153 ALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQ 210 (326)
Q Consensus 153 ALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~Lr~lK~~L~~l~~rv~ 210 (326)
.||++-..+...+=.++..|...|..+..+|...+..- -+|+..|+.|+..++++|.
T Consensus 25 eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~~-~~R~~~L~~RI~~L~~~v~ 81 (279)
T 3p8c_D 25 ELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSF-SFRVNSLQERVDRLSVSVT 81 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 48888888899999999999999999999998754322 2344444444444444443
No 12
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=34.99 E-value=70 Score=19.31 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHh
Q 020464 196 RRLKGHLLALTQQVQKVHDEIEHL 219 (326)
Q Consensus 196 r~lK~~L~~l~~rv~~Vrd~Leel 219 (326)
-++|....++.+.|+.++|++.++
T Consensus 3 yqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHHHhcc
Confidence 467888888888888888887764
No 13
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=34.91 E-value=1.1e+02 Score=24.21 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCeEEEeechH--------hHHHhhCCCCCcccCcC
Q 020464 47 SRSWIKIDQDGNFEILELDKT--------TIMRHCSLPARDLRLLD 84 (326)
Q Consensus 47 ~~~~~~~D~~G~~~~~e~~K~--------~l~~~~gL~~RDLR~lD 84 (326)
.....+-+.+|....+.+.+. .++.+.|+++..+|.+-
T Consensus 26 ~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF 71 (110)
T 2k8h_A 26 LVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF 71 (110)
T ss_dssp CEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 355555677888666666554 46667799999999763
No 14
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=33.10 E-value=23 Score=24.83 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 020464 304 EMLLEAYFVVVD 315 (326)
Q Consensus 304 EmLLEaYf~qiD 315 (326)
|+|+|+|++.++
T Consensus 9 e~LiesY~~A~e 20 (48)
T 3fyr_A 9 ELLIESYFKATE 20 (48)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 789999999775
No 15
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=32.58 E-value=1.3e+02 Score=21.47 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChh--hHHHHHHHHhH-HHHHHHHHHHHHHHHHHhh
Q 020464 148 PFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTL--NLEHLRRLKGH-LLALTQQVQKVHDEIEHLM 220 (326)
Q Consensus 148 PFEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~--~Le~Lr~lK~~-L~~l~~rv~~Vrd~LeelL 220 (326)
+=|+..|-..+......|..........+..+-.+|.+-++.- ..+.+..-... +..+...+..+...++++|
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~~~~~~~~i~~~~~~l~~~i~~ll 111 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFI 111 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999888888888888776665555555544544322211 11111111112 2455555555666666655
No 16
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=29.67 E-value=83 Score=19.53 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 020464 158 LELTCMSLDAQVKELGME 175 (326)
Q Consensus 158 L~~v~s~Le~e~~~le~~ 175 (326)
|+.-|..||+.+..+|+.
T Consensus 6 lekkcaalesklqalekk 23 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKK 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445678888887777765
No 17
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=28.98 E-value=1.8e+02 Score=21.63 Aligned_cols=50 Identities=20% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHhcCChhhHHHHHHHHhHHHH
Q 020464 155 ELALELTCMSLDAQVKELGMEIYPV-LDELASSISTLNLEHLRRLKGHLLA 204 (326)
Q Consensus 155 Ea~L~~v~s~Le~e~~~le~~~~~~-Ld~L~~~is~~~Le~Lr~lK~~L~~ 204 (326)
|.-.......|+++.+.|-..+..+ +|-++++.+..++++..-+.+++.+
T Consensus 4 ev~~~elF~eLD~diReLLSlvheIKID~It~n~~kekvekAlfLsq~Iqa 54 (69)
T 1skv_A 4 EVLEKELFEMLDEDVRELLSLIHEIKIDRITGNMDKQKLGKAYFQVQKIEA 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHheeeeccCCCHHHHHHHHHHHHHHHH
Confidence 5667778889999999999988887 6777888888889888777666544
No 18
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=23.34 E-value=4e+02 Score=25.46 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHHHH----HHHHhHHHHHHHHHHHHHHHHH
Q 020464 152 RALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHL----RRLKGHLLALTQQVQKVHDEIE 217 (326)
Q Consensus 152 rALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le~L----r~lK~~L~~l~~rv~~Vrd~Le 217 (326)
.|+| ++..+...++.+.+..|.-....++.....-.....+++ ..||++|.++...-+++.+.|+
T Consensus 161 ~a~~-af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~ 229 (373)
T 3hhm_B 161 TAIE-AFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLK 229 (373)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777 678888888888888877665666554433333333333 4577777777766655555544
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.71 E-value=2.5e+02 Score=26.79 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=9.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 020464 197 RLKGHLLALTQQVQKVHDEIEH 218 (326)
Q Consensus 197 ~lK~~L~~l~~rv~~Vrd~Lee 218 (326)
.+-..++.++++++..+..+++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 447 ELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 20
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=22.43 E-value=3.5e+02 Score=22.80 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Q 020464 154 LELALELTCMSLDAQVKELGMEIYPVLDELASSI 187 (326)
Q Consensus 154 LEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~i 187 (326)
|+-.+......+...+..+.....|..++|.+++
T Consensus 98 l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~ 131 (185)
T 3r2p_A 98 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGA 131 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666666666665543
No 21
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=22.15 E-value=3.2e+02 Score=27.42 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChhhHH---HHH-HHHhHHHHHHH-HHHHHHHHHHHhhCCh
Q 020464 149 FEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLE---HLR-RLKGHLLALTQ-QVQKVHDEIEHLMDDD 223 (326)
Q Consensus 149 FEfrALEa~L~~v~s~Le~e~~~le~~~~~~Ld~L~~~is~~~Le---~Lr-~lK~~L~~l~~-rv~~Vrd~LeelLddD 223 (326)
+-+.|.|.++..-+..|+.=...+=..++..+...-.++....+. +|+ .++..+..+.. +.+...+.|..+.
T Consensus 424 ~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li--- 500 (608)
T 3szr_A 424 VNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHF--- 500 (608)
T ss_dssp SCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 345788888888888887777666555555555444433333333 232 23444444433 3444555666666
Q ss_pred hHHhhccc
Q 020464 224 GDMAAMYL 231 (326)
Q Consensus 224 eDMa~MyL 231 (326)
+|...|.
T Consensus 501 -~mE~~~~ 507 (608)
T 3szr_A 501 -QMEQIVY 507 (608)
T ss_dssp -HHHHHCC
T ss_pred -HHhhccc
Confidence 3555554
No 22
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.06 E-value=2e+02 Score=19.77 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 020464 193 EHLRRLKGHLLALTQQVQKVHDEIEHL 219 (326)
Q Consensus 193 e~Lr~lK~~L~~l~~rv~~Vrd~Leel 219 (326)
..+...+.++..+...++.+++.|.++
T Consensus 26 ~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 26 DEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777888888777654
No 23
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=21.37 E-value=1.1e+02 Score=19.07 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHh
Q 020464 197 RLKGHLLALTQQVQKVHDEIEHL 219 (326)
Q Consensus 197 ~lK~~L~~l~~rv~~Vrd~Leel 219 (326)
-+|+.|+++.++|..+-+.|+.+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47788888888887777766654
No 24
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.24 E-value=3e+02 Score=21.14 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=13.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhCChhHH
Q 020464 196 RRLKGHLLALTQQVQKVHDEIEHLMDDDGDM 226 (326)
Q Consensus 196 r~lK~~L~~l~~rv~~Vrd~LeelLddDeDM 226 (326)
..+++.+..+...=..+--.+..+-++++++
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333444444444443
Done!