BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020465
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZU90|SKI28_ARATH F-box protein SKIP28 OS=Arabidopsis thaliana GN=SKIP28 PE=1 SV=1
Length = 292
Score = 238 bits (607), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 41/298 (13%)
Query: 28 RPPHEALFLALAYL-PLFELLAMSVVCLSLRDAVNKDILPWLNIIVDRPLNRRLSDEILM 86
R HE L + L YL LFELL+M V SLRDA+ + W ++++ PL+ RL+D+IL
Sbjct: 14 RSVHEVLLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILS 73
Query: 87 KITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLS 146
+ +SK+ G+L TL L C+ +TN GL+RV++ NP I K+ +PGC+GL+P+G++E VE LS
Sbjct: 74 EFSSKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLS 133
Query: 147 ENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNREN 206
+N+H LE LHI+GV TK+HL L+++L +
Sbjct: 134 KNNHKLETLHINGVNGFTKQHLSALYTYLS-----------------------------S 164
Query: 207 DHSIDVEICPSCSEVRMVFDCSKQLCKGKPPARCCRGCYHCIPRCAECGGCI--QPEEME 264
+ +ID+E+CP C EVRM+ CS++ C K R CRGC+ CIPRCAEC C+ E +
Sbjct: 165 EGTIDLEVCPKCDEVRMIPSCSRESCNQK--QRKCRGCWLCIPRCAECAVCLVGSDTESQ 222
Query: 265 DAVC--NDMLCSDCWLQLPKCNLCNKPYC-----RQHANLGSNSSCSSGFICDICQYQ 315
+A C +D+LC +CWL LPKC CNKPYC R+H ++++ F C+ C Y+
Sbjct: 223 EAACGNDDVLCLECWLVLPKCRFCNKPYCTNHSSRRHEIAITDAASRPSFECEACYYR 280
>sp|Q9LU91|SKI14_ARATH F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1
Length = 453
Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 149/266 (56%), Gaps = 8/266 (3%)
Query: 23 NEEEPRPPHEALFLALAYLPLFELLAMSVVCLSLRDAVNKDILPWLNIIVDRPLNRRLSD 82
N EE H A+ L +L +LL++S+VC SL V D L W +I + RPLN ++++
Sbjct: 193 NGEEDAYVHPAIGFCLYHLRGKDLLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITE 252
Query: 83 EILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAV 142
E L+ +T +A G + L +++C RIT+ L+RV+ +N + K+ +PGCT ++ G++ +
Sbjct: 253 EALLHLTERAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVL 312
Query: 143 EKL-SENDHTLEILHISGVYNITKEHLRTLHSHLKL-NSSRQNEQKRQPILYHKARHYPV 200
L S ++ L + G++ +TK+H L L + N +Q QK P YH+
Sbjct: 313 RDLKSAGKLQVKHLQLRGLFGVTKDHYDELIDLLNIDNKVKQTIQK--PRFYHRGE---A 367
Query: 201 LVNRENDHSIDVEICPSCSEVRMVFDCSKQLCKGKPPA-RCCRGCYHCIPRCAECGGCIQ 259
V+ ++D ++D+E+CP C ++V+DC + CKGK CR C CI RC CG CI
Sbjct: 368 CVSCDDDRALDIEMCPKCQNFKLVYDCPAEDCKGKKKGSEECRACSLCIQRCYHCGRCII 427
Query: 260 PEEMEDAVCNDMLCSDCWLQLPKCNL 285
E E+ C ++LC+ C PK L
Sbjct: 428 DTEYEEMFCLELLCAVCSKPTPKLTL 453
>sp|Q9LK24|FB327_ARATH F-box protein At3g27290 OS=Arabidopsis thaliana GN=At3g27290 PE=2
SV=1
Length = 382
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 127/234 (54%), Gaps = 10/234 (4%)
Query: 31 HEALFLALAYLPLFELLAMSVVCLSLRDAVNKDILPWLNI-IVDRPLNRRLSDEILMKIT 89
H+A L L YL L E+LA+ VVC SLRD+V K+ W +I + D L R++DE L+K+T
Sbjct: 128 HDAFELVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLLKLT 187
Query: 90 SKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKL-SEN 148
+A G + L L CV IT+ GL++V+ NP + KL + GC LS G++ + L S N
Sbjct: 188 RRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDLKSSN 247
Query: 149 DHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDH 208
++ L G TKE + L+ L ++ Q+R+ Y R L E+D
Sbjct: 248 RLGVKSLITGGALYFTKEQFKELNLLLG-GDAKVGLQERKKRFYTSCRSEFYL---EDDR 303
Query: 209 SIDVEICPSCSEVRMVFDCSKQLC--KGKPP--ARCCRGCYHCIPRCAECGGCI 258
D+EICP C + +VFDC C KG+ P CR C CI RC ECG C+
Sbjct: 304 VTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECGSCL 357
>sp|A1A5X2|FBXL7_DANRE F-box/LRR-repeat protein 7 OS=Danio rerio GN=fbxl7 PE=2 SV=1
Length = 489
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 31 HEALFLALAYLPLFELLAMS----VVCLSLRDAVNKDILPW----LNI-IVDRPLNRRLS 81
+EA+F ++ P E L +S V C+SL V+ + P ++I +D L
Sbjct: 225 NEAVFEVVSRCPNLEHLDVSGCSKVTCISLTRDVSVKLSPLHGQQISIRFLDMTDCFALE 284
Query: 82 DEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEA 141
DE L I + +LT L L CVR+T+ GL+ ++ P +++L + C +S G+ E
Sbjct: 285 DEGLHTIAAHCT-QLTHLYLRRCVRLTDEGLRFLVIYCPGVRELSVSDCRFISDFGLRE- 342
Query: 142 VEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVL 201
+ KL L I H S + ++ ++ S L+ ++R E + H A+ L
Sbjct: 343 IAKLEGRLRYLSIAHCSRITDVGVRYVAKYCSRLRYLNARGCEGLTDHGIEHLAKSCLKL 402
Query: 202 VNRENDHSIDVEICPSCSEVRM 223
S+D+ CP S+ +
Sbjct: 403 ------KSLDIGKCPLVSDAGL 418
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 30/150 (20%)
Query: 30 PHEALFLALAYLPLFELLAMSVVCLSLRDAVNKDILPWLNIIVDRPLNR--RLSDEIL-- 85
P A +LP +L + VC W N+ D L R RL+ ++L
Sbjct: 116 PDHAFLQIFTHLPTNQLCRCARVCRR-----------WYNLAWDPRLWRTIRLTGDVLHV 164
Query: 86 ---MKITSKA------NGRLT--TLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLS 134
+++ ++ N LT T+ + C R+T+ GL V + P +++L + GC +S
Sbjct: 165 DRALRVLTRRLCQDTPNVCLTVETVMVSGCRRLTDRGLYTVAQSCPELRRLEVAGCYNVS 224
Query: 135 PQGVIEAVEKLSENDHTLEILHISGVYNIT 164
+ V E V + +H L +SG +T
Sbjct: 225 NEAVFEVVSRCPNLEH----LDVSGCSKVT 250
>sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1
Length = 491
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 17/202 (8%)
Query: 31 HEALFLALAYLPLFELLAMS----VVCLSLRDAVNKDILPWLNIIVD-RPLNRR----LS 81
+EA+F ++ P E L +S V C+SL + + P + R L+ L
Sbjct: 227 NEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLE 286
Query: 82 DEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEA 141
DE L I + +LT L L CVR+T+ GL+ ++ IK+L + C +S G+ E
Sbjct: 287 DEGLHTIAAHCT-QLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLRE- 344
Query: 142 VEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVL 201
+ KL L I H V ++ ++ S L+ ++R E + + A++ L
Sbjct: 345 IAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKL 404
Query: 202 VNRENDHSIDVEICPSCSEVRM 223
S+D+ CP S+ +
Sbjct: 405 ------KSLDIGKCPLVSDTGL 420
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 8 MSIRPSSSISSVDSINEEEPRPPHEALFLALAYLPLFELLAMSVVC-----LSLRDAVNK 62
++ RP +S+D R P ++ ++LP +L + VC L+ + +
Sbjct: 103 LASRPQKEQASID-------RLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWR 155
Query: 63 DI-LPWLNIIVDRPL---NRRLSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEK 118
I L I VDR L RRL + T L T+ + C R+T+ GL + +
Sbjct: 156 TIRLTGETINVDRALKVLTRRLCQD-----TPNVCLMLETVTVSGCRRLTDRGLYTIAQC 210
Query: 119 NPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNIT 164
P +++L + GC +S + V + V L N LE L +SG +T
Sbjct: 211 CPELRRLEVSGCYNISNEAVFDVVS-LCPN---LEHLDVSGCSKVT 252
>sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3
Length = 735
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 92 ANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHT 151
A+ R+ L L NCVR+++A + ++ E+ P + L + C L+ QG+ V N +
Sbjct: 477 ASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIV-----NIFS 531
Query: 152 LEILHISGVYNITKEHLRTLHSHLKL 177
L + +SG +I+ E L L H KL
Sbjct: 532 LVSIDLSGT-DISNEGLNVLSRHKKL 556
>sp|Q5MJ12|FXL16_RAT F-box/LRR-repeat protein 16 OS=Rattus norvegicus GN=Fbxl16 PE=2
SV=1
Length = 479
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 80 LSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVI 139
++D L T++ TL L++C ITN G+ V+ P + L + GC+ ++ G
Sbjct: 280 VTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTSLSLSGCSKVTDDG-- 337
Query: 140 EAVEKLSENDHTLEILHISGVYNITKEHL 168
VE ++EN L L +S IT L
Sbjct: 338 --VELVAENLRKLRSLDLSWCPRITDMAL 364
>sp|Q8N461|FXL16_HUMAN F-box/LRR-repeat protein 16 OS=Homo sapiens GN=FBXL16 PE=1 SV=2
Length = 479
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 80 LSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVI 139
++D L T++ TL L++C ITN G+ V+ P + L + GC+ ++ G
Sbjct: 280 VTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDG-- 337
Query: 140 EAVEKLSENDHTLEILHISGVYNITKEHL 168
VE ++EN L L +S IT L
Sbjct: 338 --VELVAENLRKLRSLDLSWCPRITDMAL 364
>sp|A2RT62|FXL16_MOUSE F-box/LRR-repeat protein 16 OS=Mus musculus GN=Fbxl16 PE=2 SV=1
Length = 479
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 80 LSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVI 139
++D L T++ TL L++C ITN G+ V+ P + L + GC+ ++ G
Sbjct: 280 VTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTSLSLSGCSKVTDDG-- 337
Query: 140 EAVEKLSENDHTLEILHISGVYNITKEHL 168
VE ++EN L L +S IT L
Sbjct: 338 --VELVAENLRKLRSLDLSWCPRITDMAL 364
>sp|Q5BJ29|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1
Length = 491
Score = 38.9 bits (89), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 17/202 (8%)
Query: 31 HEALFLALAYLPLFELLAMS----VVCLSLRDAVNKDILPWLNIIVD-RPLNRR----LS 81
+EA+F ++ P E L +S V C+SL + + P + R L+ L
Sbjct: 227 NEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLE 286
Query: 82 DEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEA 141
DE L I + +LT L L CVR+T+ GL+ ++ IK+L + C +S G+ E
Sbjct: 287 DEGLHTIAAHCT-QLTHLYLRRCVRLTDEGLRYLVIYCTSIKELSVSDCRFVSDFGLRE- 344
Query: 142 VEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVL 201
+ KL L I H + ++ ++ S L+ ++R E + + A++ L
Sbjct: 345 IAKLESRLRYLSIAHCGRITDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKL 404
Query: 202 VNRENDHSIDVEICPSCSEVRM 223
S+D+ CP S+ +
Sbjct: 405 ------KSLDIGKCPLVSDTGL 420
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 8 MSIRPSSSISSVDSINEEEPRPPHEALFLALAYLPLFELLAMSVVC-----LSLRDAVNK 62
++ RP +S+D R P ++ ++LP +L + VC L+ + +
Sbjct: 103 LASRPQKEQASID-------RLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWR 155
Query: 63 DI-LPWLNIIVDRPL---NRRLSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEK 118
I L I VDR L RRL + T L T+ + C R+T+ GL + +
Sbjct: 156 TIRLTGETINVDRALKVLTRRLCQD-----TPNVCLMLETVIVSGCRRLTDRGLYTIAQC 210
Query: 119 NPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNIT 164
P +++L + GC +S + V + V L N LE L +SG +T
Sbjct: 211 CPELRRLEVSGCYNISNEAVFDVVS-LCPN---LEHLDVSGCSKVT 252
>sp|Q0P4D1|AMN1_DANRE Protein AMN1 homolog OS=Danio rerio GN=amn1 PE=2 SV=1
Length = 249
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 77 NRRLSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQ 136
N ++SD L +I S L T+ L C IT+ GL+ + + P+++ + + GCT ++
Sbjct: 66 NCKISDSALKQINSL---HLRTILLRGCAEITSEGLEVLAPRCPYLQVVDLTGCTAVTDS 122
Query: 137 GVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKL 177
G ++ L+ + LE++ + G ++ + L L + K+
Sbjct: 123 G----IQALARHCKCLEVISLRGCSALSDKALLELGGNCKM 159
>sp|P07996|TSP1_HUMAN Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=2
Length = 1170
Score = 35.0 bits (79), Expect = 0.79, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 139 IEAVEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHY 198
++A+ +S ++ + +L + G+ I ++ + N NE +R P+ YH Y
Sbjct: 266 LQAICGISCDELSSMVLELRGLRTIVTTLQDSIRKVTEENKELANELRRPPLCYHNGVQY 325
Query: 199 PVLVNRENDHSIDVEICPSCSEVRMVFDCSKQLCKGKPPARCCRGCYHCIPRC 251
N+ V+ C C V C K C P + C PRC
Sbjct: 326 ------RNNEEWTVDSCTECHCQNSVTICKKVSCPIMPCSNATVPDGECCPRC 372
>sp|Q4G0U5|PCDP1_HUMAN Primary ciliary dyskinesia protein 1 OS=Homo sapiens GN=PCDP1 PE=1
SV=2
Length = 840
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 154 ILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDH----- 208
I+H G Y + K+H + LH +N S NE R IL + +++ + R+ H
Sbjct: 64 IIHFGG-YQVEKQHQQILHL---VNVS--NEDTRVHILPPQTKYFEINYVRKEHHLVPGL 117
Query: 209 SIDVEICPSCSEVRMVFDCSKQLCKG 234
S+ V + S E R +DC + CKG
Sbjct: 118 SLTVTVTFSPDEWRYYYDCIRVHCKG 143
>sp|Q9M096|FBL19_ARATH Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana
GN=FBL19 PE=4 SV=1
Length = 301
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 82 DEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEA 141
D L + ++ G LT + + +C T L E+ P ++ L+I C P +
Sbjct: 89 DSFLRSVVDRSEGGLTEIRIRHC---TERSLSYAAERCPNLEVLWIKNC----PNVTDAS 141
Query: 142 VEKLSENDHTLEILHISGVYNITKEHLRTL 171
+EK++ N L L IS Y IT E L TL
Sbjct: 142 MEKIAMNCPNLRELDISYSYGITHESLITL 171
>sp|A2ASQ1|AGRIN_MOUSE Agrin OS=Mus musculus GN=Agrn PE=1 SV=1
Length = 1950
Score = 34.3 bits (77), Expect = 1.4, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 36/112 (32%), Gaps = 13/112 (11%)
Query: 215 CPSCSEVRMVF-------DCSKQLCKGKPPARCCRG-----CYHCIPRCAECGGCIQPEE 262
C +C E F C C+ PP C C R A C +Q EE
Sbjct: 494 CQTCGETVCTFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTYLSACELREAACQQQVQIEE 553
Query: 263 MEDAVCNDMLCSDCWLQLPKCNLCNKPYCRQHANLGSNSSCSSGFICDI-CQ 313
C C + N C + CRQH + S +CD CQ
Sbjct: 554 ARAGPCEPAECGSGGSGSGEDNACEQELCRQHGGVWDEDSEDGPCVCDFSCQ 605
>sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1
SV=1
Length = 628
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 107 ITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKE 166
IT +G +I+ + + K+ GC+ L+ + VI A+ + N TLE+L+I G NIT
Sbjct: 480 ITESGFLHLIQSS--LVKINFSGCSNLTDR-VISAIT--ARNGWTLEVLNIDGCSNITDA 534
Query: 167 HLRTLHSH 174
L ++ ++
Sbjct: 535 SLVSIAAN 542
>sp|A1BHL3|HRCA_CHLPD Heat-inducible transcription repressor HrcA OS=Chlorobium
phaeobacteroides (strain DSM 266) GN=hrcA PE=3 SV=1
Length = 357
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 15/98 (15%)
Query: 51 VVCLSLRDAVNKDILPWLNIIVDRP--------LNRRLSDEILMKITSKANGRLTT---- 98
+V LS++ + K I+ L++ V R LN+RLS L +I + RL+
Sbjct: 156 MVILSIQSLIVKTIVMELDLAVSRQEVSGVVDLLNQRLSGLTLSEIRKTISMRLSDCLAD 215
Query: 99 LALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQ 136
+LIN V + +AG ++ ++ P I++LYI G + Q
Sbjct: 216 ASLINFV-VRSAG--QLFDETPIIERLYISGAGYIVDQ 250
>sp|Q8C7B6|FXL22_MOUSE F-box and leucine-rich protein 22 OS=Mus musculus GN=Fbxl22 PE=1
SV=1
Length = 236
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 95 RLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIE 140
RL TL L NC R+TN L V ++ L++ C +S G++
Sbjct: 141 RLRTLRLENCARVTNRTLAAVAAHGRALQTLHVDFCRNVSAAGLLR 186
>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1
Length = 418
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 80 LSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVI 139
+SD+ + ++ + +G L TL + CVRIT+ GL+ + E + + + GCT ++ +G +
Sbjct: 317 ISDDGINRMVRQMHG-LRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRG-L 374
Query: 140 EAVEKL 145
E + +L
Sbjct: 375 ERITQL 380
>sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2
SV=1
Length = 610
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 95 RLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEI 154
RL LAL+ C RI N+ LQ + + ++ L++ C+G+ A+ +++ L+
Sbjct: 373 RLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDI----AMCSIAKGCRNLKK 428
Query: 155 LHISGVYNITKEHLRTLHSHLK 176
LHI Y I + + ++ H K
Sbjct: 429 LHIRRCYEIGNKGIISIGKHCK 450
>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1
Length = 400
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 80 LSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGV 138
+SD+ + ++ + +G L TL + CVRIT+ GL+ + E + + + GCT ++ +G+
Sbjct: 317 ISDDGINRMVRQMHG-LRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGL 374
>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1
Length = 400
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 80 LSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGV 138
+SD+ + ++ + +G L TL + CVRIT+ GL+ + E + + + GCT ++ +G+
Sbjct: 317 ISDDGINRMVRQMHG-LRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGL 374
>sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana
GN=UBP9 PE=2 SV=1
Length = 910
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 121 FIKKLYIPGCTGLSPQGVIEAVEKLS--------ENDHTLEILHISGVYNITKEHLRTLH 172
+KKL+ G ++P+ + + + + L + G++ + R +
Sbjct: 358 LLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPY 417
Query: 173 SHLKLNSSRQNEQKRQPIL-YHKARHYPVLVNRENDHSIDVEICPSCSEVRMVFD 226
LK + SR +++ + + YHKAR+ V+V+ +CP+C ++ + FD
Sbjct: 418 IELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPACGKISITFD 472
>sp|P35441|TSP1_MOUSE Thrombospondin-1 OS=Mus musculus GN=Thbs1 PE=1 SV=1
Length = 1170
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 139 IEAVEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHY 198
++A+ LS ++ + +L + G+ I ++ + N +E KR P+ +H Y
Sbjct: 266 LQAICGLSCDELSSMVLELKGLRTIVTTLQDSIRKVTEENRELVSELKRPPLCFHNGVQY 325
Query: 199 PVLVNRENDHSIDVEICPSCSEVRMVFDCSKQLCKGKPPARCCRGCYHCIPRC 251
+N+ V+ C C V C K C P + C PRC
Sbjct: 326 ------KNNEEWTVDSCTECHCQNSVTICKKVSCPIMPCSNATVPDGECCPRC 372
>sp|O74783|POF2_SCHPO SCF E3 ubiquitin ligase complex F-box protein pof2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pof2 PE=1 SV=1
Length = 463
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 96 LTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEIL 155
L L + NC + + G+ ++I++ P++ +L IP C L+ +++ LSE + +E L
Sbjct: 148 LKALNIGNCGLVEDTGMVQIIKRCPYLNRLIIPNCRKLTDV----SLQILSEKEDLIE-L 202
Query: 156 HISG 159
ISG
Sbjct: 203 DISG 206
>sp|P42700|RO60_XENLA 60 kDa SS-A/Ro ribonucleoprotein OS=Xenopus laevis GN=trove2 PE=1
SV=1
Length = 538
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 139 IEAVEKLSENDHTLEILHISGVYNITKEHLRTLH 172
+EA E++ LEI+H+ Y + +EHL T+H
Sbjct: 229 LEATERVKRTKDELEIIHLIDEYRLVREHLLTIH 262
>sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana
GN=UBP10 PE=2 SV=2
Length = 923
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 115 VIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLS--------ENDHTLEILHISGVYNITKE 166
I +KKL+ G ++P+ + + + + L + G++ +
Sbjct: 353 AIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNK 412
Query: 167 HLRTLHSHLKLNSSRQNEQKRQPIL-YHKARHYPVLVNRENDHSIDVEICPSCSEVRMVF 225
R + LK + SR +++ + + YHKAR+ V+V+ +CP C ++ + F
Sbjct: 413 VKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISITF 472
Query: 226 D 226
D
Sbjct: 473 D 473
>sp|Q3EC97|FBL14_ARATH F-box/LRR-repeat protein 14 OS=Arabidopsis thaliana GN=FBL14 PE=2
SV=1
Length = 480
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 96 LTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSE-------- 147
L L+L NC+ GL V+ ++KL++ CTG+S +I V+K S
Sbjct: 250 LVELSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRV 309
Query: 148 -NDHTLEILHISGVYNITKEHLRTLHSH 174
+D TL +L+ + +T E L + H
Sbjct: 310 PSDFTLPLLN-NITLRLTDESLSAIAQH 336
>sp|C8V4D4|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=grrA PE=2 SV=1
Length = 585
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 78 RRLSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQG 137
R L+D L K+ N RL L + CV++T+ L V + +K+L + G + ++ +
Sbjct: 199 RSLTDHTLFKVAENCN-RLQGLNITGCVKVTDDSLIAVSQNCRLLKRLKLNGVSQVTDKA 257
Query: 138 VIEAVE 143
++ +
Sbjct: 258 ILSFAQ 263
>sp|Q8LB33|FB330_ARATH F-box protein At3g58530 OS=Arabidopsis thaliana GN=At3g58530 PE=2
SV=1
Length = 353
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 65 LPWLNIIVDRPLNRRLSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKK 124
L WLN+ V +++SD + ITS +L ++ VR+T+AG++ +++ I
Sbjct: 113 LEWLNLNV----CQKISDNGIEAITSIC-PKLKVFSIYWNVRVTDAGIRNLVKNCRHITD 167
Query: 125 LYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHL 168
L + GC L+ + +++ ++E+ LE L+I+ IT + L
Sbjct: 168 LNLSGCKSLTDK----SMQLVAESYPDLESLNITRCVKITDDGL 207
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 86 MKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKL 145
M++ +++ L +L + CV+IT+ GL +V++K ++ L + +G + + ++ + L
Sbjct: 181 MQLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMK-ISLL 239
Query: 146 SENDHTLEILHISGVYNITKEHL 168
++ L L I G NI+ E +
Sbjct: 240 AD----LRFLDICGAQNISDEGI 258
>sp|Q28178|TSP1_BOVIN Thrombospondin-1 OS=Bos taurus GN=THBS1 PE=2 SV=2
Length = 1170
Score = 32.3 bits (72), Expect = 5.4, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 139 IEAVEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHY 198
++A+ +S ++ + +L + G+ I ++ + N NE +R P+ YH Y
Sbjct: 266 LQAICGISCDELSSMVLELRGLRTIVTTLQDSIRKVTEENKELANELRRPPLCYHNGVQY 325
Query: 199 PVLVNRENDHSIDVEICPSCSEVRMVFDCSKQLCKGKPPARCCRGCYHCIPRC 251
R D V+ C C V C K C P + C PRC
Sbjct: 326 -----RTGDEWT-VDSCTECRCQNSVTICKKVSCPIMPCSNATVPDGECCPRC 372
>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC
PE=4 SV=2
Length = 1024
Score = 32.0 bits (71), Expect = 5.9, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 27/100 (27%)
Query: 85 LMKITSKANGRLTTLA--------------LINCVRITNAGLQRVIEKNPFIKKLYIPGC 130
L +T K N RL L+ L CVR+T GL I K P ++ L + GC
Sbjct: 615 LKGLTLKNNARLELLSESGVRKLESVRKIDLSGCVRLT--GLPSSIGKLPKLRTLDLSGC 672
Query: 131 TGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRT 170
TGLS + ++ +L G+ I EHL+T
Sbjct: 673 TGLSMASLPRSL-----------VLPRDGLNVIFPEHLKT 701
>sp|Q8CDU4|FXL13_MOUSE F-box/LRR-repeat protein 13 OS=Mus musculus GN=Fbxl13 PE=2 SV=2
Length = 790
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 79 RLSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQ 136
+L+D+I+ I R+T+L + C +IT+AG++ + + ++ L I GC L+ Q
Sbjct: 643 QLTDDIIKTIAIFCT-RITSLNIAGCPKITDAGMEILSARCHYLHILDISGCIQLTDQ 699
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,060,516
Number of Sequences: 539616
Number of extensions: 5073567
Number of successful extensions: 13273
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 13055
Number of HSP's gapped (non-prelim): 257
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)