Query 020465
Match_columns 326
No_of_seqs 225 out of 1305
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 3.4E-20 1.2E-24 173.2 20.6 190 23-221 6-263 (336)
2 2p1m_B Transport inhibitor res 99.7 3.1E-17 1.1E-21 164.0 11.8 141 24-178 4-158 (594)
3 3ogk_B Coronatine-insensitive 99.6 2.1E-16 7.1E-21 158.2 5.5 179 25-216 12-231 (592)
4 3e4g_A ATP synthase subunit S, 99.5 2.9E-15 9.8E-20 132.1 4.7 81 80-167 73-156 (176)
5 3e4g_A ATP synthase subunit S, 99.5 2.4E-14 8.3E-19 126.2 6.1 94 94-197 61-157 (176)
6 1fs1_A SKP2 F-BOX, cyclin A/CD 99.2 3.3E-12 1.1E-16 90.2 3.8 48 23-71 6-53 (53)
7 2p1m_B Transport inhibitor res 99.0 9E-10 3.1E-14 109.8 10.7 128 78-217 357-493 (594)
8 2ast_B S-phase kinase-associat 99.0 1.3E-09 4.4E-14 101.3 10.9 77 94-177 93-169 (336)
9 1io0_A Tropomodulin; LRR prote 99.0 2.8E-09 9.7E-14 92.8 11.5 130 82-216 25-162 (185)
10 3ogk_B Coronatine-insensitive 98.9 2.5E-09 8.4E-14 106.8 10.1 132 79-221 364-503 (592)
11 3un9_A NLR family member X1; l 98.8 1.2E-08 3.9E-13 98.7 9.3 132 79-216 112-250 (372)
12 3un9_A NLR family member X1; l 98.8 1.7E-08 5.7E-13 97.6 10.1 143 68-217 75-223 (372)
13 1io0_A Tropomodulin; LRR prote 98.6 5.9E-07 2E-11 78.0 12.0 114 68-187 39-159 (185)
14 1pgv_A TMD-1, tropomodulin TMD 98.5 4.2E-07 1.4E-11 81.2 9.6 129 82-214 30-166 (197)
15 1z7x_W Ribonuclease inhibitor; 98.4 3.9E-07 1.3E-11 87.9 8.5 142 68-216 31-181 (461)
16 3l2o_B F-box only protein 4; s 98.4 1.8E-08 6.2E-13 95.3 -1.0 48 25-73 4-51 (312)
17 1z7x_W Ribonuclease inhibitor; 98.4 8.3E-07 2.8E-11 85.6 9.6 77 94-174 227-307 (461)
18 2e31_A FBS1, F-box only protei 98.4 7.4E-08 2.5E-12 91.1 1.6 48 24-72 49-97 (297)
19 2ca6_A RAN GTPase-activating p 98.3 2.3E-06 7.8E-11 81.4 11.3 118 95-216 160-285 (386)
20 2ca6_A RAN GTPase-activating p 98.3 9.3E-07 3.2E-11 84.1 8.2 133 79-217 170-315 (386)
21 3goz_A Leucine-rich repeat-con 98.2 2.9E-06 9.8E-11 80.4 7.2 184 26-216 34-236 (362)
22 3goz_A Leucine-rich repeat-con 98.1 5.4E-06 1.8E-10 78.5 8.3 78 95-175 139-220 (362)
23 1pgv_A TMD-1, tropomodulin TMD 98.1 1.1E-05 3.8E-10 71.9 9.7 110 68-182 44-160 (197)
24 3v7d_B Cell division control p 98.1 5.8E-07 2E-11 85.8 1.2 50 24-74 13-63 (464)
25 2ovr_B FBW7, F-BOX/WD repeat p 98.1 1.5E-06 5.1E-11 83.0 3.0 49 23-72 16-64 (445)
26 1p22_A F-BOX/WD-repeat protein 98.0 8.3E-07 2.8E-11 84.8 0.4 48 24-72 9-60 (435)
27 2ra8_A Uncharacterized protein 97.6 6.7E-05 2.3E-09 72.3 7.0 24 79-102 204-227 (362)
28 2ra8_A Uncharacterized protein 97.4 4.4E-05 1.5E-09 73.6 1.9 121 94-220 193-321 (362)
29 4ezg_A Putative uncharacterize 97.1 0.00024 8.1E-09 61.2 3.4 105 94-216 66-170 (197)
30 4ezg_A Putative uncharacterize 97.0 0.00039 1.3E-08 59.8 3.6 104 94-215 88-191 (197)
31 2ell_A Acidic leucine-rich nuc 96.8 0.00024 8.4E-09 59.2 1.0 56 95-160 50-105 (168)
32 2je0_A Acidic leucine-rich nuc 96.8 0.00026 9E-09 57.8 1.0 61 94-165 42-102 (149)
33 2ell_A Acidic leucine-rich nuc 96.3 0.00076 2.6E-08 56.2 0.3 112 91-217 21-132 (168)
34 4fmz_A Internalin; leucine ric 96.1 0.0054 1.8E-07 56.6 5.3 102 94-216 221-322 (347)
35 4fmz_A Internalin; leucine ric 95.9 0.014 4.7E-07 53.9 6.8 102 94-217 66-167 (347)
36 2je0_A Acidic leucine-rich nuc 95.8 0.012 4E-07 47.8 5.5 64 94-165 64-127 (149)
37 1wwl_A Monocyte differentiatio 95.7 0.024 8.1E-07 52.0 7.7 122 84-216 139-264 (312)
38 4fcg_A Uncharacterized protein 95.6 0.003 1E-07 58.9 1.1 13 94-106 150-162 (328)
39 4fcg_A Uncharacterized protein 95.4 0.0018 6E-08 60.5 -1.3 17 201-217 225-241 (328)
40 2z80_A TOLL-like receptor 2, v 95.2 0.024 8.4E-07 52.6 6.1 115 94-217 198-313 (353)
41 2z81_A CD282 antigen, TOLL-lik 95.0 0.06 2.1E-06 52.7 8.4 62 94-160 334-397 (549)
42 3v47_A TOLL-like receptor 5B a 95.0 0.0081 2.8E-07 57.5 2.0 112 94-216 54-165 (455)
43 1h6t_A Internalin B; cell adhe 94.9 0.03 1E-06 51.1 5.6 15 201-215 174-188 (291)
44 1wwl_A Monocyte differentiatio 94.9 0.04 1.4E-06 50.5 6.3 68 94-165 173-242 (312)
45 1h6u_A Internalin H; cell adhe 94.8 0.026 9E-07 51.9 4.9 16 201-216 169-184 (308)
46 4glp_A Monocyte differentiatio 94.7 0.019 6.5E-07 52.5 3.8 113 93-216 144-262 (310)
47 1a9n_A U2A', U2A'; complex (nu 94.6 0.0058 2E-07 51.4 0.0 57 94-160 42-98 (176)
48 1h6t_A Internalin B; cell adhe 94.6 0.048 1.6E-06 49.7 6.0 33 94-130 68-100 (291)
49 1h6u_A Internalin H; cell adhe 94.5 0.017 6E-07 53.1 2.9 100 94-216 107-206 (308)
50 3rfs_A Internalin B, repeat mo 94.4 0.015 5E-07 52.4 2.0 15 202-216 178-192 (272)
51 1m9s_A Internalin B; cell inva 94.2 0.045 1.5E-06 55.9 5.4 100 94-216 87-186 (605)
52 1m9s_A Internalin B; cell inva 94.2 0.041 1.4E-06 56.2 5.1 55 94-160 65-119 (605)
53 3o53_A Protein LRIM1, AGAP0063 94.2 0.011 3.9E-07 54.4 0.8 16 202-217 234-249 (317)
54 1o6v_A Internalin A; bacterial 94.2 0.04 1.4E-06 53.4 4.8 101 94-217 265-365 (466)
55 1xeu_A Internalin C; cellular 94.0 0.027 9.2E-07 50.7 3.1 33 94-130 63-95 (263)
56 1xeu_A Internalin C; cellular 93.9 0.042 1.4E-06 49.4 4.1 59 94-165 41-99 (263)
57 4glp_A Monocyte differentiatio 93.9 0.039 1.3E-06 50.4 3.9 68 94-165 169-238 (310)
58 2z7x_B TOLL-like receptor 1, v 93.9 0.034 1.2E-06 54.3 3.6 61 94-160 324-384 (520)
59 1a9n_A U2A', U2A'; complex (nu 93.8 0.011 3.7E-07 49.7 -0.1 123 79-218 3-126 (176)
60 2z66_A Variable lymphocyte rec 93.7 0.0079 2.7E-07 54.7 -1.1 60 94-160 126-185 (306)
61 2o6s_A Variable lymphocyte rec 93.7 0.015 5E-07 49.9 0.6 108 94-217 52-160 (208)
62 1o6v_A Internalin A; bacterial 93.6 0.049 1.7E-06 52.8 4.3 100 94-216 243-342 (466)
63 1ozn_A Reticulon 4 receptor; N 93.5 0.023 7.8E-07 51.1 1.7 108 94-216 56-164 (285)
64 1ozn_A Reticulon 4 receptor; N 93.2 0.02 6.8E-07 51.5 0.7 110 94-217 80-189 (285)
65 2z81_A CD282 antigen, TOLL-lik 93.2 0.23 7.8E-06 48.5 8.4 109 94-216 310-421 (549)
66 2z66_A Variable lymphocyte rec 93.1 0.0069 2.4E-07 55.1 -2.6 13 148-160 148-160 (306)
67 3o53_A Protein LRIM1, AGAP0063 93.1 0.023 8E-07 52.2 0.9 84 118-216 142-225 (317)
68 3o6n_A APL1; leucine-rich repe 93.0 0.023 7.7E-07 53.5 0.7 14 203-216 337-350 (390)
69 2o6s_A Variable lymphocyte rec 93.0 0.023 7.8E-07 48.7 0.7 108 93-216 27-135 (208)
70 2z63_A TOLL-like receptor 4, v 92.9 0.0088 3E-07 58.8 -2.3 11 94-104 373-383 (570)
71 3v47_A TOLL-like receptor 5B a 92.9 0.032 1.1E-06 53.3 1.7 36 94-130 129-164 (455)
72 2z7x_B TOLL-like receptor 1, v 92.9 0.022 7.6E-07 55.6 0.6 65 94-165 348-413 (520)
73 3vq2_A TLR4, TOLL-like recepto 92.8 0.013 4.3E-07 58.4 -1.4 60 94-160 424-483 (606)
74 2z63_A TOLL-like receptor 4, v 92.7 0.013 4.4E-07 57.6 -1.5 60 94-160 396-455 (570)
75 2o6q_A Variable lymphocyte rec 92.4 0.036 1.2E-06 49.7 1.1 16 202-217 202-217 (270)
76 2o6r_A Variable lymphocyte rec 92.3 0.031 1.1E-06 46.6 0.7 109 93-217 27-136 (177)
77 3oja_A Leucine-rich immune mol 92.3 0.032 1.1E-06 55.0 0.8 16 202-217 234-249 (487)
78 3t6q_A CD180 antigen; protein- 92.3 0.025 8.6E-07 56.2 -0.0 35 94-130 425-459 (606)
79 3m19_A Variable lymphocyte rec 92.3 0.031 1.1E-06 49.5 0.6 16 202-217 176-191 (251)
80 4ecn_A Leucine-rich repeat pro 92.2 0.11 3.9E-06 55.4 5.0 40 94-135 491-530 (876)
81 2z62_A TOLL-like receptor 4, v 92.1 0.031 1.1E-06 50.0 0.4 110 94-217 52-161 (276)
82 3rfs_A Internalin B, repeat mo 91.9 0.14 4.7E-06 45.9 4.4 105 94-216 63-168 (272)
83 3m19_A Variable lymphocyte rec 91.9 0.04 1.4E-06 48.8 0.8 108 94-217 59-167 (251)
84 3rgz_A Protein brassinosteroid 91.9 0.023 7.8E-07 59.0 -0.9 36 94-130 100-136 (768)
85 4g8a_A TOLL-like receptor 4; l 91.7 0.083 2.8E-06 52.0 3.0 109 94-216 76-184 (635)
86 3zyi_A Leucine-rich repeat-con 91.6 0.047 1.6E-06 52.6 1.1 16 201-216 262-277 (452)
87 2o6q_A Variable lymphocyte rec 91.6 0.042 1.5E-06 49.1 0.7 108 94-216 85-192 (270)
88 3e6j_A Variable lymphocyte rec 91.6 0.1 3.6E-06 45.7 3.2 107 94-217 64-171 (229)
89 3t6q_A CD180 antigen; protein- 91.4 0.021 7.1E-07 56.8 -1.8 35 94-130 376-410 (606)
90 3oja_A Leucine-rich immune mol 91.4 0.05 1.7E-06 53.6 1.0 38 118-160 142-179 (487)
91 2v70_A SLIT-2, SLIT homolog 2 91.3 0.06 2.1E-06 47.0 1.3 109 94-217 57-165 (220)
92 3oja_B Anopheles plasmodium-re 91.2 0.042 1.5E-06 55.2 0.3 32 95-130 233-264 (597)
93 2id5_A Lingo-1, leucine rich r 91.1 0.059 2E-06 52.0 1.1 17 201-217 316-332 (477)
94 3zyj_A Leucine-rich repeat-con 90.9 0.058 2E-06 51.8 0.9 15 202-216 252-266 (440)
95 2wfh_A SLIT homolog 2 protein 90.8 0.17 5.8E-06 43.3 3.7 108 93-217 30-138 (193)
96 4eco_A Uncharacterized protein 90.7 0.13 4.5E-06 52.2 3.4 65 94-160 249-315 (636)
97 4g8a_A TOLL-like receptor 4; l 90.7 0.11 3.6E-06 51.2 2.6 109 92-216 50-159 (635)
98 3j0a_A TOLL-like receptor 5; m 90.6 0.041 1.4E-06 57.8 -0.5 112 94-216 48-159 (844)
99 4ecn_A Leucine-rich repeat pro 90.6 0.19 6.3E-06 53.7 4.5 107 94-217 515-631 (876)
100 2v9t_B SLIT homolog 2 protein 90.6 0.074 2.5E-06 46.4 1.2 14 203-216 150-163 (220)
101 2id5_A Lingo-1, leucine rich r 90.5 0.047 1.6E-06 52.7 -0.1 16 201-216 172-187 (477)
102 1w8a_A SLIT protein; signaling 90.5 0.069 2.4E-06 45.5 1.0 110 94-217 29-138 (192)
103 3e6j_A Variable lymphocyte rec 90.0 0.073 2.5E-06 46.7 0.6 108 93-216 39-146 (229)
104 3a79_B TLR6, VLRB.59, TOLL-lik 89.8 0.04 1.4E-06 54.6 -1.3 37 94-131 377-414 (562)
105 3j0a_A TOLL-like receptor 5; m 89.8 0.042 1.4E-06 57.7 -1.3 111 94-217 73-186 (844)
106 3zyi_A Leucine-rich repeat-con 89.7 0.083 2.8E-06 50.9 0.9 17 201-217 286-302 (452)
107 1xku_A Decorin; proteoglycan, 89.5 0.18 6.2E-06 46.1 3.0 12 205-216 192-203 (330)
108 3rw6_A Nuclear RNA export fact 89.5 0.6 2E-05 42.9 6.4 62 93-161 169-231 (267)
109 3zyj_A Leucine-rich repeat-con 89.4 0.19 6.4E-06 48.2 3.1 17 201-217 275-291 (440)
110 1dce_A Protein (RAB geranylger 89.4 0.17 5.7E-06 51.2 2.8 106 94-218 441-546 (567)
111 2v70_A SLIT-2, SLIT homolog 2 89.3 0.079 2.7E-06 46.2 0.4 111 93-217 31-141 (220)
112 3rgz_A Protein brassinosteroid 89.2 0.18 6E-06 52.3 2.9 13 148-160 221-233 (768)
113 2xwt_C Thyrotropin receptor; s 89.0 0.018 6.1E-07 50.5 -4.1 61 94-160 55-115 (239)
114 1p9a_G Platelet glycoprotein I 88.7 0.14 4.8E-06 46.7 1.6 34 94-130 77-110 (290)
115 4b8c_D Glucose-repressible alc 88.7 0.08 2.7E-06 55.0 -0.1 105 94-217 224-328 (727)
116 1ogq_A PGIP-2, polygalacturona 88.7 0.028 9.6E-07 51.7 -3.2 110 94-217 76-186 (313)
117 3a79_B TLR6, VLRB.59, TOLL-lik 88.7 0.097 3.3E-06 51.8 0.5 61 94-160 353-413 (562)
118 2z62_A TOLL-like receptor 4, v 88.6 0.2 6.7E-06 44.6 2.5 60 94-160 100-159 (276)
119 3bz5_A Internalin-J, INLJ; leu 88.4 0.27 9.4E-06 47.9 3.5 11 119-129 105-115 (457)
120 3oja_B Anopheles plasmodium-re 88.2 0.1 3.6E-06 52.3 0.4 35 94-130 75-109 (597)
121 4eco_A Uncharacterized protein 88.1 0.56 1.9E-05 47.5 5.7 63 94-165 206-288 (636)
122 1ziw_A TOLL-like receptor 3; i 88.1 0.29 9.8E-06 49.3 3.6 14 203-216 169-182 (680)
123 3vq2_A TLR4, TOLL-like recepto 88.0 0.082 2.8E-06 52.4 -0.5 15 202-216 445-459 (606)
124 2ft3_A Biglycan; proteoglycan, 88.0 0.14 4.7E-06 47.0 1.0 35 94-130 54-88 (332)
125 2xwt_C Thyrotropin receptor; s 87.8 0.047 1.6E-06 47.7 -2.2 66 93-165 30-95 (239)
126 2xot_A Amphoterin-induced prot 87.6 0.079 2.7E-06 49.7 -0.9 111 94-217 64-175 (361)
127 1p9a_G Platelet glycoprotein I 86.0 0.11 3.8E-06 47.3 -0.8 56 94-160 55-110 (290)
128 2ft3_A Biglycan; proteoglycan, 86.0 0.073 2.5E-06 48.9 -2.1 62 94-164 193-254 (332)
129 2v9t_B SLIT homolog 2 protein 85.9 0.16 5.4E-06 44.3 0.1 109 94-217 32-140 (220)
130 1xku_A Decorin; proteoglycan, 85.8 0.36 1.2E-05 44.0 2.6 61 94-160 121-181 (330)
131 1ds9_A Outer arm dynein; leuci 85.8 0.15 5E-06 43.4 -0.1 105 94-217 48-152 (198)
132 1dce_A Protein (RAB geranylger 85.7 0.44 1.5E-05 48.0 3.4 104 94-212 463-567 (567)
133 2z80_A TOLL-like receptor 2, v 85.7 1.1 3.6E-05 41.3 5.7 65 107-177 261-329 (353)
134 3bz5_A Internalin-J, INLJ; leu 85.4 0.45 1.5E-05 46.3 3.2 11 94-104 106-116 (457)
135 2xot_A Amphoterin-induced prot 85.0 0.2 6.9E-06 46.9 0.4 63 94-165 88-150 (361)
136 1ziw_A TOLL-like receptor 3; i 84.9 0.24 8.1E-06 49.9 0.9 14 202-215 350-363 (680)
137 2co8_A NEDD9 interacting prote 84.0 0.49 1.7E-05 35.2 2.1 34 271-304 43-81 (82)
138 3rw6_A Nuclear RNA export fact 81.7 1.7 5.7E-05 39.8 5.2 82 78-165 107-210 (267)
139 1ogq_A PGIP-2, polygalacturona 81.3 0.16 5.4E-06 46.6 -1.9 59 94-160 125-184 (313)
140 3o6n_A APL1; leucine-rich repe 81.2 0.85 2.9E-05 42.5 3.1 57 94-160 272-328 (390)
141 2o6r_A Variable lymphocyte rec 79.5 0.69 2.3E-05 38.2 1.7 77 94-178 76-153 (177)
142 2ds5_A CLPX, ATP-dependent CLP 79.0 0.79 2.7E-05 31.8 1.5 31 281-315 12-42 (51)
143 3g06_A SSPH2 (leucine-rich rep 77.4 0.72 2.5E-05 47.1 1.4 31 94-130 61-91 (622)
144 1ovx_A ATP-dependent CLP prote 74.9 1.2 4E-05 32.8 1.5 31 281-315 19-49 (67)
145 1ds9_A Outer arm dynein; leuci 70.8 2 6.7E-05 36.2 2.3 58 94-160 93-150 (198)
146 3cvr_A Invasion plasmid antige 67.9 1.7 5.8E-05 44.0 1.4 31 94-130 80-110 (571)
147 3g39_A Variable lymphocyte rec 66.9 1.4 4.8E-05 36.5 0.5 75 94-177 54-130 (170)
148 1w8a_A SLIT protein; signaling 66.0 1.4 4.7E-05 37.2 0.3 60 94-161 78-137 (192)
149 4b8c_D Glucose-repressible alc 65.0 4.1 0.00014 42.1 3.7 86 115-216 219-304 (727)
150 3cvr_A Invasion plasmid antige 62.2 2 7E-05 43.4 0.8 16 202-217 227-242 (571)
151 3g06_A SSPH2 (leucine-rich rep 62.2 7.8 0.00027 39.4 5.1 65 94-172 241-305 (622)
152 2r9u_A Variable lymphocyte rec 61.4 2.2 7.6E-05 35.5 0.7 59 94-160 33-91 (174)
153 1jl5_A Outer protein YOPM; leu 59.5 3.5 0.00012 39.9 1.8 13 203-215 235-247 (454)
154 2r9u_A Variable lymphocyte rec 58.8 2.3 7.7E-05 35.5 0.3 73 94-175 57-131 (174)
155 2wfh_A SLIT homolog 2 protein 56.8 5.4 0.00018 33.6 2.4 73 94-174 78-150 (193)
156 2cup_A Skeletal muscle LIM-pro 54.8 5.4 0.00018 30.2 1.9 40 251-291 36-77 (101)
157 2ifg_A High affinity nerve gro 54.4 3 0.0001 38.0 0.4 11 301-311 221-232 (347)
158 2akl_A PHNA-like protein PA012 54.2 5.1 0.00017 33.1 1.7 27 278-313 25-51 (138)
159 1jl5_A Outer protein YOPM; leu 54.1 4.3 0.00015 39.2 1.5 13 118-130 193-205 (454)
160 3g39_A Variable lymphocyte rec 54.0 5.5 0.00019 32.8 2.0 60 93-160 29-88 (170)
161 1e4u_A Transcriptional repress 50.4 8.8 0.0003 28.3 2.4 29 268-296 33-66 (78)
162 2ecg_A Baculoviral IAP repeat- 49.7 6.2 0.00021 28.4 1.4 26 266-291 41-67 (75)
163 3sb4_A Hypothetical leucine ri 48.8 14 0.00048 33.5 4.0 56 94-159 202-259 (329)
164 1wim_A KIAA0161 protein; ring 48.6 4.3 0.00015 30.5 0.4 28 252-279 6-37 (94)
165 2ct2_A Tripartite motif protei 47.7 3.8 0.00013 29.9 -0.1 26 266-291 35-67 (88)
166 4gne_A Histone-lysine N-methyl 47.5 8.4 0.00029 30.5 1.9 34 281-316 70-103 (107)
167 2ifg_A High affinity nerve gro 40.3 12 0.00041 33.9 2.1 60 94-160 31-90 (347)
168 2ecv_A Tripartite motif-contai 39.7 9.8 0.00034 27.2 1.1 25 267-291 36-70 (85)
169 2xqn_T Testin, TESS; metal-bin 39.0 11 0.00037 29.7 1.4 40 251-291 33-74 (126)
170 2ecw_A Tripartite motif-contai 38.5 11 0.00037 27.0 1.2 26 266-291 35-70 (85)
171 3sb4_A Hypothetical leucine ri 37.0 21 0.00072 32.2 3.2 69 79-159 212-283 (329)
172 2ysl_A Tripartite motif-contai 35.3 9.2 0.00031 26.8 0.3 25 266-290 36-67 (73)
173 2egp_A Tripartite motif-contai 35.2 9.4 0.00032 27.2 0.4 26 266-291 28-64 (79)
174 2jtn_A LIM domain-binding prot 34.4 14 0.00049 31.1 1.5 60 250-315 89-156 (182)
175 4ic3_A E3 ubiquitin-protein li 31.4 20 0.00069 25.6 1.7 24 267-290 41-65 (74)
176 2ep4_A Ring finger protein 24; 31.4 18 0.00062 25.4 1.4 38 253-290 17-62 (74)
177 2ea5_A Cell growth regulator w 31.0 20 0.00069 25.4 1.6 27 266-292 31-58 (68)
178 2d8t_A Dactylidin, ring finger 29.7 18 0.00062 25.3 1.2 26 266-291 31-60 (71)
179 2dj7_A Actin-binding LIM prote 29.1 11 0.00038 27.5 -0.1 14 249-262 16-29 (80)
180 2yho_A E3 ubiquitin-protein li 28.4 24 0.00082 25.7 1.7 28 266-293 34-62 (79)
181 1g25_A CDK-activating kinase a 27.9 12 0.00042 25.7 -0.1 26 266-291 24-54 (65)
182 2rgt_A Fusion of LIM/homeobox 27.6 17 0.00059 30.2 0.8 21 270-290 53-75 (169)
183 1joc_A EEA1, early endosomal a 26.6 18 0.00063 29.1 0.8 39 279-317 84-124 (125)
184 2ect_A Ring finger protein 126 25.6 25 0.00086 24.9 1.3 26 267-292 35-64 (78)
185 2ecm_A Ring finger and CHY zin 25.5 17 0.00059 23.8 0.4 38 252-289 6-52 (55)
186 1dl6_A Transcription factor II 25.5 33 0.0011 23.9 1.8 32 210-248 9-40 (58)
187 4ap4_A E3 ubiquitin ligase RNF 25.4 25 0.00084 27.2 1.3 47 266-314 30-80 (133)
188 2ecy_A TNF receptor-associated 25.0 23 0.00077 24.4 0.9 25 266-290 31-60 (66)
189 3jyw_9 60S ribosomal protein L 24.9 39 0.0013 24.9 2.2 30 280-317 26-55 (72)
190 1x4l_A Skeletal muscle LIM-pro 24.6 16 0.00056 25.6 0.1 12 249-260 6-17 (72)
191 1iym_A EL5; ring-H2 finger, ub 22.5 32 0.0011 22.4 1.3 38 252-289 6-52 (55)
192 1x4v_A Hypothetical protein LO 21.8 23 0.00078 25.4 0.4 17 280-296 27-43 (63)
193 2l4z_A DNA endonuclease RBBP8, 21.2 28 0.00094 27.7 0.8 15 248-262 61-75 (123)
194 4gt6_A Cell surface protein; l 20.4 69 0.0023 29.6 3.6 11 118-128 309-319 (394)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.4e-20 Score=173.22 Aligned_cols=190 Identities=19% Similarity=0.217 Sum_probs=115.3
Q ss_pred CCCCCCCCHHHHHHHHccCChHHHHHHhhcCHHhhhhhccCCCCceeeeecCC--------------C-----C------
Q 020465 23 NEEEPRPPHEALFLALAYLPLFELLAMSVVCLSLRDAVNKDILPWLNIIVDRP--------------L-----N------ 77 (326)
Q Consensus 23 ~~~~~~LP~E~Ll~IfsyL~~~dLl~~s~VCr~Wr~lv~~dp~LW~~ldL~~~--------------l-----~------ 77 (326)
+..+..||+|++..||+||+.+|++++++|||+|+++ ..+|.+|+++|+... + +
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~-~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~ 84 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ 84 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHH-HTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECS
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-hcCchhheeeccccccCCHHHHHhhhhccceEEEcCCccccc
Confidence 4567889999999999999999999999999999999 678999999998521 0 0
Q ss_pred ------------------CCCCHHHHHHHHhhc-----------------------CCCccEEecCCCCCCCHHHHHHHH
Q 020465 78 ------------------RRLSDEILMKITSKA-----------------------NGRLTTLALINCVRITNAGLQRVI 116 (326)
Q Consensus 78 ------------------~~itD~~L~~l~~~~-----------------------~~~L~~L~Ls~C~~ITD~gL~~v~ 116 (326)
..+++..+..+.... .++|++|+|++|..+++.++..++
T Consensus 85 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 85 PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 113344344433332 145555555555555555555555
Q ss_pred HhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCC-CCCeeeccCcc-ccchHHHHHHHHhcccCcchhhhhccCCccccc
Q 020465 117 EKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDH-TLEILHISGVY-NITKEHLRTLHSHLKLNSSRQNEQKRQPILYHK 194 (326)
Q Consensus 117 ~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~-~Lk~L~LsgC~-~lTd~~l~~La~~l~~~~~l~~l~~~~~~~~~~ 194 (326)
.++|+|++|+|++|..+++.+ +..+...++ +|++|+|+++. .+++..+..+...++.+.. +.+.....+++
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~----~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~---L~l~~~~~l~~ 237 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKH----VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH---LDLSDSVMLKN 237 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHH----HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE---EECTTCTTCCG
T ss_pred hcCCCCCEEcCCCCCCcChHH----HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE---EeCCCCCcCCH
Confidence 556666666666655555555 444445555 66666666665 4565555555554444332 23333333333
Q ss_pred CCccccccCCCCceeeecCCCCCCccc
Q 020465 195 ARHYPVLVNRENDHSIDVEICPSCSEV 221 (326)
Q Consensus 195 ~gl~~l~~~c~~Lr~lDL~~Cp~c~~~ 221 (326)
.++. .+..++.|+.|||..|+..++.
T Consensus 238 ~~~~-~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 238 DCFQ-EFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp GGGG-GGGGCTTCCEEECTTCTTCCGG
T ss_pred HHHH-HHhCCCCCCEeeCCCCCCCCHH
Confidence 3332 2245566777777766644443
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=3.1e-17 Score=163.97 Aligned_cols=141 Identities=9% Similarity=0.159 Sum_probs=84.3
Q ss_pred CCCCCCCHHHHHHHHccCC-hHHHHHHhhcCHHhhhhhccCCCCceeeeecCCCCCCCCHHHHHHHHhhcCCCccEEecC
Q 020465 24 EEEPRPPHEALFLALAYLP-LFELLAMSVVCLSLRDAVNKDILPWLNIIVDRPLNRRLSDEILMKITSKANGRLTTLALI 102 (326)
Q Consensus 24 ~~~~~LP~E~Ll~IfsyL~-~~dLl~~s~VCr~Wr~lv~~dp~LW~~ldL~~~l~~~itD~~L~~l~~~~~~~L~~L~Ls 102 (326)
+.+..||+|++..||+||+ .+|+.+++.|||+|+++ +...|+.+++.... ..+.. .+..++ ++|+.|+|.
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~---~~~~~~~l~~~~~~--~~~~~---~~~~~~-~~L~~L~L~ 74 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI---ERWCRRKVFIGNCY--AVSPA---TVIRRF-PKVRSVELK 74 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH---HHHHCCEEEESSTT--SSCHH---HHHHHC-TTCCEEEEE
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh---hhhhceEEeecccc--ccCHH---HHHhhC-CCceEEecc
Confidence 5678899999999999999 99999999999999998 34568888774321 12222 222333 356666666
Q ss_pred CCCCCCHH-------------HHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHH
Q 020465 103 NCVRITNA-------------GLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLR 169 (326)
Q Consensus 103 ~C~~ITD~-------------gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~ 169 (326)
++..++|. .+..++..+++|++|+|+++. +++.+ +..+++.+++|++|+|++|..+++.++.
T Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~----~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 149 (594)
T 2p1m_B 75 GKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDC----LELIAKSFKNFKVLVLSSCEGFSTDGLA 149 (594)
T ss_dssp CSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHH----HHHHHHHCTTCCEEEEESCEEEEHHHHH
T ss_pred CCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHH----HHHHHHhCCCCcEEeCCCcCCCCHHHHH
Confidence 65544332 234455556666666666553 55555 4555555566666666666555555555
Q ss_pred HHHHhcccC
Q 020465 170 TLHSHLKLN 178 (326)
Q Consensus 170 ~La~~l~~~ 178 (326)
.++..++.+
T Consensus 150 ~~~~~~~~L 158 (594)
T 2p1m_B 150 AIAATCRNL 158 (594)
T ss_dssp HHHHHCTTC
T ss_pred HHHHhCCCC
Confidence 555555444
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=2.1e-16 Score=158.18 Aligned_cols=179 Identities=11% Similarity=0.114 Sum_probs=112.4
Q ss_pred CCCCCCHHHHHHHHccC-ChHHHHHHhhcCHHhhhhhccCCCCceeeeecCCCC--------------------------
Q 020465 25 EEPRPPHEALFLALAYL-PLFELLAMSVVCLSLRDAVNKDILPWLNIIVDRPLN-------------------------- 77 (326)
Q Consensus 25 ~~~~LP~E~Ll~IfsyL-~~~dLl~~s~VCr~Wr~lv~~dp~LW~~ldL~~~l~-------------------------- 77 (326)
....||+|++.+||+|| +.+|+.+++.|||+|+.+.. ..|+.+.+...+.
T Consensus 12 ~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 88 (592)
T 3ogk_B 12 SCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS---ETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAM 88 (592)
T ss_dssp CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH---HHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGG
T ss_pred ccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh---ccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhh
Confidence 33579999999999999 89999999999999999822 2233333221100
Q ss_pred --------CCCCHHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHHHhCCC-ccEEEeCCCCCCCHHHHHHHHHHHHhc
Q 020465 78 --------RRLSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPF-IKKLYIPGCTGLSPQGVIEAVEKLSEN 148 (326)
Q Consensus 78 --------~~itD~~L~~l~~~~~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~-L~~L~Ls~C~~ITd~gi~~~L~~L~~~ 148 (326)
.......+..++..+ ++|++|+|+++ .|+|.++..++..+|+ |++|+|++|.++++.+ +..+..+
T Consensus 89 ~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~----l~~~~~~ 162 (592)
T 3ogk_B 89 FNLIPENWGGYVTPWVTEISNNL-RQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDG----LLSIVTH 162 (592)
T ss_dssp GTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHH----HHHHHHH
T ss_pred cccccccccccchHHHHHHHhhC-CCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHH----HHHHHhh
Confidence 122344555555554 56777777776 5777777777766666 7777777776667767 6666667
Q ss_pred CCCCCeeeccCccccchHH---HHHHHHhcccCcchhhhhccCCccc--ccCCccccccCCCCceeeecCCCC
Q 020465 149 DHTLEILHISGVYNITKEH---LRTLHSHLKLNSSRQNEQKRQPILY--HKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 149 C~~Lk~L~LsgC~~lTd~~---l~~La~~l~~~~~l~~l~~~~~~~~--~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
|++|++|+|++| .+++.+ +..+...++.+..+ ++....+. +..++..++.+++.|+.++|..|.
T Consensus 163 ~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L---~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 163 CRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVL---NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp CTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEE---ECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CCCCCEEECccc-cccCcchhHHHHHHhcCCCccEE---EeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 777777777777 444443 44455554444332 33222221 112333445677788888888765
No 4
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.54 E-value=2.9e-15 Score=132.10 Aligned_cols=81 Identities=15% Similarity=0.265 Sum_probs=49.5
Q ss_pred CCHHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHHHh---CCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeee
Q 020465 80 LSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEK---NPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILH 156 (326)
Q Consensus 80 itD~~L~~l~~~~~~~L~~L~Ls~C~~ITD~gL~~v~~~---cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~ 156 (326)
|||++|..+. .+ ++|++|+|++|.+|||+|+..++.. +++|++|+|++|.+|||+| +.+|+ .+++|++|+
T Consensus 73 Itd~GL~~L~-~~-~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G----l~~L~-~~~~L~~L~ 145 (176)
T 3e4g_A 73 IMSIGFDHME-GL-QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG----IIALH-HFRNLKYLF 145 (176)
T ss_dssp CCGGGGGGGT-TC-SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH----HHHGG-GCTTCCEEE
T ss_pred ccHHHHHHhc-CC-CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH----HHHHh-cCCCCCEEE
Confidence 6666666653 22 4666666666666666666666652 4566666666666666666 55554 456666666
Q ss_pred ccCccccchHH
Q 020465 157 ISGVYNITKEH 167 (326)
Q Consensus 157 LsgC~~lTd~~ 167 (326)
|++|.+|||.+
T Consensus 146 L~~c~~Itd~g 156 (176)
T 3e4g_A 146 LSDLPGVKEKE 156 (176)
T ss_dssp EESCTTCCCHH
T ss_pred CCCCCCCCchH
Confidence 66666666654
No 5
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.48 E-value=2.4e-14 Score=126.16 Aligned_cols=94 Identities=15% Similarity=0.224 Sum_probs=80.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHh---cCCCCCeeeccCccccchHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSE---NDHTLEILHISGVYNITKEHLRT 170 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~---~C~~Lk~L~LsgC~~lTd~~l~~ 170 (326)
-+|++|+|++|. |||+|+..+ .++++|++|+|++|.+|||+| ++.|+. .|++|++|+|++|.+|||.++..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~g----L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGC----LERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHH----HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHH----HHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 479999999996 999999988 589999999999999999999 888886 37899999999999999999999
Q ss_pred HHHhcccCcchhhhhccCCcccccCCc
Q 020465 171 LHSHLKLNSSRQNEQKRQPILYHKARH 197 (326)
Q Consensus 171 La~~l~~~~~l~~l~~~~~~~~~~~gl 197 (326)
|+ .++.+. .|.+..+..+++.|+
T Consensus 135 L~-~~~~L~---~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 135 LH-HFRNLK---YLFLSDLPGVKEKEK 157 (176)
T ss_dssp GG-GCTTCC---EEEEESCTTCCCHHH
T ss_pred Hh-cCCCCC---EEECCCCCCCCchHH
Confidence 86 455543 456666666666653
No 6
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.25 E-value=3.3e-12 Score=90.20 Aligned_cols=48 Identities=27% Similarity=0.251 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHccCChHHHHHHhhcCHHhhhhhccCCCCceeee
Q 020465 23 NEEEPRPPHEALFLALAYLPLFELLAMSVVCLSLRDAVNKDILPWLNII 71 (326)
Q Consensus 23 ~~~~~~LP~E~Ll~IfsyL~~~dLl~~s~VCr~Wr~lv~~dp~LW~~ld 71 (326)
...+..||+|++..||+||+.+|+.++++|||+|+++ ..++.+|+.+|
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~-~~~~~lW~~ld 53 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESLWQTLD 53 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH-HTCGGGC----
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCChHHHHhcC
Confidence 3467889999999999999999999999999999999 67999999886
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.02 E-value=9e-10 Score=109.82 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeC-----CCCCCC----HHHHHHHHHHHHhc
Q 020465 78 RRLSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIP-----GCTGLS----PQGVIEAVEKLSEN 148 (326)
Q Consensus 78 ~~itD~~L~~l~~~~~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls-----~C~~IT----d~gi~~~L~~L~~~ 148 (326)
..+++..+..++..+ ++|+.|. .+|.++|+.++..++..+|+|++|+|+ +|.++| ++| +..+..+
T Consensus 357 ~~l~~~~l~~l~~~~-~~L~~L~-~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~----~~~l~~~ 430 (594)
T 2p1m_B 357 VALTEQGLVSVSMGC-PKLESVL-YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG----FGAIVEH 430 (594)
T ss_dssp SCCCHHHHHHHHHHC-TTCCEEE-EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH----HHHHHHH
T ss_pred CCCCHHHHHHHHHhc-hhHHHHH-HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH----HHHHHhh
Confidence 467788877777654 5788884 356678888887777777888888887 677777 667 6666677
Q ss_pred CCCCCeeeccCccccchHHHHHHHHhcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 149 DHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 149 C~~Lk~L~LsgC~~lTd~~l~~La~~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
+++|++|+|++ ++++..+..++.+++.+.. +.+.... +++.|+..++.+++.|+.|||..|+.
T Consensus 431 ~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~---L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 431 CKDLRRLSLSG--LLTDKVFEYIGTYAKKMEM---LSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEECCS--SCCHHHHHHHHHHCTTCCE---EEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred CCCccEEeecC--cccHHHHHHHHHhchhccE---eeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 77777777766 6777777777765555433 2333333 23334444445677777777777775
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.01 E-value=1.3e-09 Score=101.31 Aligned_cols=77 Identities=26% Similarity=0.313 Sum_probs=49.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|++|+|+++. +++.++..+..++|+|++|+|++| ++++.+ ...++. +++|++|+|++|..+++.++..+..
T Consensus 93 ~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~----~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 93 FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPI----VNTLAK-NSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHH----HHHHTT-CTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred CCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCHHH----HHHHhc-CCCCCEEECCCCCCCCHHHHHHHHh
Confidence 689999999984 888878777777777777777766 366555 444432 5555555555555555555544444
Q ss_pred hccc
Q 020465 174 HLKL 177 (326)
Q Consensus 174 ~l~~ 177 (326)
.++.
T Consensus 166 ~~~~ 169 (336)
T 2ast_B 166 SCSR 169 (336)
T ss_dssp HCTT
T ss_pred cCCC
Confidence 4433
No 9
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.99 E-value=2.8e-09 Score=92.83 Aligned_cols=130 Identities=20% Similarity=0.205 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHHH---hCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeecc
Q 020465 82 DEILMKITSKANGRLTTLALINCVRITNAGLQRVIE---KNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHIS 158 (326)
Q Consensus 82 D~~L~~l~~~~~~~L~~L~Ls~C~~ITD~gL~~v~~---~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~Ls 158 (326)
++.+..+... .++|++|+|+++..|+|+|+..+++ .+++|++|+|+++ +|+++|+....+.+. ..+.|++|+|+
T Consensus 25 ~~~l~~~l~~-~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~-~n~~L~~L~L~ 101 (185)
T 1io0_A 25 EETLKRIQNN-DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLK-VNNTLKSLNVE 101 (185)
T ss_dssp HHHHHHHHTT-CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHH-HCSSCCEEECC
T ss_pred HHHHHHHHhc-CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHH-hCCCcCEEECc
Confidence 3445555444 3577777777776777777766654 3667777777776 477777443333332 45677777777
Q ss_pred CccccchHHHHHHHHhcccCcchhhhhc--cCCcccccCC---ccccccCCCCceeeecCCCC
Q 020465 159 GVYNITKEHLRTLHSHLKLNSSRQNEQK--RQPILYHKAR---HYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 159 gC~~lTd~~l~~La~~l~~~~~l~~l~~--~~~~~~~~~g---l~~l~~~c~~Lr~lDL~~Cp 216 (326)
++ .|+++++.+|+..+.....++.+.+ ....+ ++.| +...+.....|+.|||+.+.
T Consensus 102 ~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i-~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 102 SN-FISGSGILALVEALQSNTSLIELRIDNQSQPL-GNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC-CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCC-CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 76 6777777777777776666655555 33322 2223 22233456778888888764
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.93 E-value=2.5e-09 Score=106.79 Aligned_cols=132 Identities=14% Similarity=0.001 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCC---CCCCCH----HHHHHHHHHHHhcCCC
Q 020465 79 RLSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPG---CTGLSP----QGVIEAVEKLSENDHT 151 (326)
Q Consensus 79 ~itD~~L~~l~~~~~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~---C~~ITd----~gi~~~L~~L~~~C~~ 151 (326)
.+++..+..++..+ ++|++|+| +|.++|+.++..++..+|+|++|+|++ |.++|+ +| +..+..++++
T Consensus 364 ~~~~~~~~~l~~~~-~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~----~~~~~~~~~~ 437 (592)
T 3ogk_B 364 LVSQRGLIALAQGC-QELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG----VRSLLIGCKK 437 (592)
T ss_dssp CCCHHHHHHHHHHC-TTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH----HHHHHHHCTT
T ss_pred ccCHHHHHHHHhhC-ccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH----HHHHHHhCCC
Confidence 46666666665553 46666666 555666666666666666666666653 445654 35 5555566777
Q ss_pred CCeeeccCccc-cchHHHHHHHHhcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCCCccc
Q 020465 152 LEILHISGVYN-ITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPSCSEV 221 (326)
Q Consensus 152 Lk~L~LsgC~~-lTd~~l~~La~~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~c~~~ 221 (326)
|++|+|++|.+ +++..+..++..++.+..+ .+.... +++.|+..++.+++.|+.|||..|+ .++.
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L---~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ 503 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM---LLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSER 503 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEE---EECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHH
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEe---eccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHH
Confidence 77777766653 6777777777666554433 333332 2333444556788889999999888 4544
No 11
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=1.2e-08 Score=98.69 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHHH----hCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCe
Q 020465 79 RLSDEILMKITSKANGRLTTLALINCVRITNAGLQRVIE----KNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEI 154 (326)
Q Consensus 79 ~itD~~L~~l~~~~~~~L~~L~Ls~C~~ITD~gL~~v~~----~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~ 154 (326)
.++++.+..++... .+|+.|+|+++ .|+|.|+..++. .+++|++|+|++| ++++.|+.....++ ...++|++
T Consensus 112 ~l~~~~~~~l~~~L-~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L-~~~~~L~~ 187 (372)
T 3un9_A 112 QLDPAGLRTLLPVF-LRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL-AGNTSVTH 187 (372)
T ss_dssp CCCHHHHHHTHHHH-HTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH-HTCSSCCE
T ss_pred CCCHHHHHHHHHHH-HhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH-hcCCCcCE
Confidence 46666666665443 35677777766 667766666543 3566777777776 46666632222222 34566777
Q ss_pred eeccCccccchHHHHHHHHhcccCcchhhhhccCCcccccCCccc---cccCCCCceeeecCCCC
Q 020465 155 LHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYP---VLVNRENDHSIDVEICP 216 (326)
Q Consensus 155 L~LsgC~~lTd~~l~~La~~l~~~~~l~~l~~~~~~~~~~~gl~~---l~~~c~~Lr~lDL~~Cp 216 (326)
|+|+++ .+++.++..|+..+.....++.+.+....+.+ .|... .+...+.|+.|||+.++
T Consensus 188 L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~-~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 188 LSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGD-TAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp EECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH-HHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred EeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH-HHHHHHHHHHHhCCCCCEEeccCCC
Confidence 777766 47777777777666655555445544433322 22111 22345667777777765
No 12
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=1.7e-08 Score=97.56 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=108.7
Q ss_pred eeeeecCCCCCCCCHHHHHHHHhh---cCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHH
Q 020465 68 LNIIVDRPLNRRLSDEILMKITSK---ANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEK 144 (326)
Q Consensus 68 ~~ldL~~~l~~~itD~~L~~l~~~---~~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~ 144 (326)
+.+++.. ..+++.....++.. ...+|+.|+|+++ .|+|.|+..++...++|++|+|+++ ++++.|+....+.
T Consensus 75 ~~L~Ls~---n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 75 RQLNLAG---VRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp CEEECTT---SCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred CEEEecC---CCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 4667642 46888777666553 2358999999998 7999999999999999999999998 6999994443344
Q ss_pred HHhcCCCCCeeeccCccccchHHHHHHHHhcccCcchhhhhccCCcccccCCcc---ccccCCCCceeeecCCCCC
Q 020465 145 LSENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHY---PVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 145 L~~~C~~Lk~L~LsgC~~lTd~~l~~La~~l~~~~~l~~l~~~~~~~~~~~gl~---~l~~~c~~Lr~lDL~~Cp~ 217 (326)
+....++|++|+|+++ .+++.++..++..+.....++.+.+....+.+ .|+. ..+.....|+.|||..|..
T Consensus 150 L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~-~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 150 LLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD-EGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH-HHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc-HHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 4456789999999999 79999999999888777666666666554333 3322 2345677899999999853
No 13
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=5.9e-07 Score=78.00 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=75.0
Q ss_pred eeeeecCCCCCCCCHHHHHHHHhh--cCCCccEEecCCCCCCCHHHHHHHHH---hCCCccEEEeCCCCCCCHHHHHHHH
Q 020465 68 LNIIVDRPLNRRLSDEILMKITSK--ANGRLTTLALINCVRITNAGLQRVIE---KNPFIKKLYIPGCTGLSPQGVIEAV 142 (326)
Q Consensus 68 ~~ldL~~~l~~~itD~~L~~l~~~--~~~~L~~L~Ls~C~~ITD~gL~~v~~---~cp~L~~L~Ls~C~~ITd~gi~~~L 142 (326)
+.++|.. +..++|+.+..++.. ...+|++|+|+++ .|+|+|...+++ .++.|++|+|+++ +|+++|+....
T Consensus 39 ~~L~L~~--n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~ 114 (185)
T 1io0_A 39 EEVNLNN--IMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALV 114 (185)
T ss_dssp CEEECTT--CTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHH
T ss_pred CEEEecC--CCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHH
Confidence 4566532 126778777766542 2357888888887 688888766543 5678888888886 58888843322
Q ss_pred HHHHhcCCCCCeeec--cCccccchHHHHHHHHhcccCcchhhhhcc
Q 020465 143 EKLSENDHTLEILHI--SGVYNITKEHLRTLHSHLKLNSSRQNEQKR 187 (326)
Q Consensus 143 ~~L~~~C~~Lk~L~L--sgC~~lTd~~l~~La~~l~~~~~l~~l~~~ 187 (326)
+++ ...+.|++|+| ++. .+++++..+|++.+.....++.+.+.
T Consensus 115 ~~L-~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 115 EAL-QSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HGG-GGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHH-HhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 222 35667888888 544 78888888888777766655444443
No 14
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.49 E-value=4.2e-07 Score=81.17 Aligned_cols=129 Identities=14% Similarity=0.215 Sum_probs=80.9
Q ss_pred HHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHHH---hCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeecc
Q 020465 82 DEILMKITSKANGRLTTLALINCVRITNAGLQRVIE---KNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHIS 158 (326)
Q Consensus 82 D~~L~~l~~~~~~~L~~L~Ls~C~~ITD~gL~~v~~---~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~Ls 158 (326)
++.|..+... ...|++|+|++...|.|+|...+++ .+..|++|+|+++ +|+|+|...+-++| +....|++|+|+
T Consensus 30 ~~~l~~ll~~-n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL-~~N~tL~~L~L~ 106 (197)
T 1pgv_A 30 ESCINRLRED-DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELI-ETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHHHHTT-CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHH-HHCSSCCEEECC
T ss_pred HHHHHHHHhc-CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHH-hcCCccCeEecC
Confidence 4556666554 3578888887656788887766654 4667888888776 47888743333333 345678888887
Q ss_pred CccccchHHHHHHHHhcccCcchhhhhccCC-c-ccccCC---ccccccCCCCceeeecCC
Q 020465 159 GVYNITKEHLRTLHSHLKLNSSRQNEQKRQP-I-LYHKAR---HYPVLVNRENDHSIDVEI 214 (326)
Q Consensus 159 gC~~lTd~~l~~La~~l~~~~~l~~l~~~~~-~-~~~~~g---l~~l~~~c~~Lr~lDL~~ 214 (326)
+. .|++.+..+|++.+....++..+.+... . .+++.| +...++.-..|..+|+..
T Consensus 107 ~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 107 SN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp SS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 76 6888888888888777777655554421 1 223322 222334555677777763
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.44 E-value=3.9e-07 Score=87.92 Aligned_cols=142 Identities=20% Similarity=0.166 Sum_probs=91.2
Q ss_pred eeeeecCCCCCCCCHHHHHHHHhh--cCCCccEEecCCCCCCCHHHHHHHHHhCC----CccEEEeCCCCCCCHHHHHHH
Q 020465 68 LNIIVDRPLNRRLSDEILMKITSK--ANGRLTTLALINCVRITNAGLQRVIEKNP----FIKKLYIPGCTGLSPQGVIEA 141 (326)
Q Consensus 68 ~~ldL~~~l~~~itD~~L~~l~~~--~~~~L~~L~Ls~C~~ITD~gL~~v~~~cp----~L~~L~Ls~C~~ITd~gi~~~ 141 (326)
+.+++.. .++++..+..+... ..++|++|+|+++ .|++.++..+....+ +|++|+|+++ ++++.|+..
T Consensus 31 ~~L~L~~---~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~- 104 (461)
T 1z7x_W 31 QVVRLDD---CGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGV- 104 (461)
T ss_dssp SEEEEES---SCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHH-
T ss_pred cEEEccC---CCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHH-
Confidence 4566642 35777755544321 1367888888886 688888888888776 6889999887 488877222
Q ss_pred HHHHHhcCCCCCeeeccCccccchHHHHHHHHhcccC-cchhhhhccCCcccccC--CccccccCCCCceeeecCCCC
Q 020465 142 VEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKLN-SSRQNEQKRQPILYHKA--RHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 142 L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~~l~~~-~~l~~l~~~~~~~~~~~--gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
+......+++|++|+|+++ .+++.++..++..+... ..++.+.+....+.... .+...+..++.|+.+||..+.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 1222246788999999888 48888888887765431 12333444444333211 112234567899999999887
No 16
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.43 E-value=1.8e-08 Score=95.29 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHccCChHHHHHHhhcCHHhhhhhccCCCCceeeeec
Q 020465 25 EEPRPPHEALFLALAYLPLFELLAMSVVCLSLRDAVNKDILPWLNIIVD 73 (326)
Q Consensus 25 ~~~~LP~E~Ll~IfsyL~~~dLl~~s~VCr~Wr~lv~~dp~LW~~ldL~ 73 (326)
.++.||+|++++||+||+.+||+++++|||+||.+ +.|+.||+.+-+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l-a~D~~LWr~~l~r 51 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET-VRDPILWRYFLLR 51 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH-HTCHHHHHHHHHS
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hccchHHHHHHhc
Confidence 45679999999999999999999999999999999 8999999987654
No 17
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.39 E-value=8.3e-07 Score=85.64 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=33.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHH----hCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIE----KNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLR 169 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~----~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~ 169 (326)
++|++|+|+++ .|++.|+..++. .+++|++|+|++| ++++.|+......+ ..+++|++|+|+++ .+++.+..
T Consensus 227 ~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n-~i~~~~~~ 302 (461)
T 1z7x_W 227 ASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVL-RAKESLKELSLAGN-ELGDEGAR 302 (461)
T ss_dssp TTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHH-HHCTTCCEEECTTC-CCHHHHHH
T ss_pred CCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHH-hhCCCcceEECCCC-CCchHHHH
Confidence 34555555554 455555444433 2445555555554 35554421111111 23445555555544 34444444
Q ss_pred HHHHh
Q 020465 170 TLHSH 174 (326)
Q Consensus 170 ~La~~ 174 (326)
.++..
T Consensus 303 ~l~~~ 307 (461)
T 1z7x_W 303 LLCET 307 (461)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 18
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.37 E-value=7.4e-08 Score=91.14 Aligned_cols=48 Identities=31% Similarity=0.396 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHccCChHHHH-HHhhcCHHhhhhhccCCCCceeeee
Q 020465 24 EEEPRPPHEALFLALAYLPLFELL-AMSVVCLSLRDAVNKDILPWLNIIV 72 (326)
Q Consensus 24 ~~~~~LP~E~Ll~IfsyL~~~dLl-~~s~VCr~Wr~lv~~dp~LW~~ldL 72 (326)
.....||+|+|..||+||+.++|+ ++++|||+|+++ ..|+.+|+..-.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l-~~~~~~w~~~~~ 97 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL-VDGAPLWLLKCQ 97 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH-HTSHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH-hcChHHHHHHhh
Confidence 456789999999999999999999 999999999999 789999998644
No 19
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.35 E-value=2.3e-06 Score=81.39 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=58.0
Q ss_pred CccEEecCCCCCCCHHHHHHH---HHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHH
Q 020465 95 RLTTLALINCVRITNAGLQRV---IEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTL 171 (326)
Q Consensus 95 ~L~~L~Ls~C~~ITD~gL~~v---~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~L 171 (326)
+|++|+|+++ .|++.++..+ ...+++|++|+|+++ ++++.|+...+......+++|++|+|+++ .+++.+...+
T Consensus 160 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l 236 (386)
T 2ca6_A 160 PLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSAL 236 (386)
T ss_dssp CCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHH
T ss_pred CCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHH
Confidence 5666666555 4555555432 235566666666665 46666632222211135566666666665 4666555555
Q ss_pred HHhcccCcchhhhhccCCcccccCCcccc---c--cCCCCceeeecCCCC
Q 020465 172 HSHLKLNSSRQNEQKRQPILYHKARHYPV---L--VNRENDHSIDVEICP 216 (326)
Q Consensus 172 a~~l~~~~~l~~l~~~~~~~~~~~gl~~l---~--~~c~~Lr~lDL~~Cp 216 (326)
...+.....++.+.+....+.+ .|...+ + ..++.|+.|||..|.
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCH-HHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHccCCCcCEEECCCCCCch-hhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 5555544444333333332221 111111 1 125666777776664
No 20
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.33 E-value=9.3e-07 Score=84.13 Aligned_cols=133 Identities=11% Similarity=0.053 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHh---hcCCCccEEecCCCCCCCHHHHHHHHH----hCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCC
Q 020465 79 RLSDEILMKITS---KANGRLTTLALINCVRITNAGLQRVIE----KNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHT 151 (326)
Q Consensus 79 ~itD~~L~~l~~---~~~~~L~~L~Ls~C~~ITD~gL~~v~~----~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~ 151 (326)
++++..+..++. .. ++|+.|+|+++ .|++.|+..++. .+++|++|+|+++. +++.|+..... ....+++
T Consensus 170 ~l~~~~~~~l~~~l~~~-~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~-~l~~~~~ 245 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSH-RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI-ALKSWPN 245 (386)
T ss_dssp CCTGGGHHHHHHHHHHC-TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH-HGGGCTT
T ss_pred CCCcHHHHHHHHHHHhC-CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHH-HHccCCC
Confidence 466555554332 32 57888888887 788888766555 67888888888764 77777332222 2246778
Q ss_pred CCeeeccCccccchHHHHHHHHhccc--CcchhhhhccCCcccccCCcc---ccc-cCCCCceeeecCCCCC
Q 020465 152 LEILHISGVYNITKEHLRTLHSHLKL--NSSRQNEQKRQPILYHKARHY---PVL-VNRENDHSIDVEICPS 217 (326)
Q Consensus 152 Lk~L~LsgC~~lTd~~l~~La~~l~~--~~~l~~l~~~~~~~~~~~gl~---~l~-~~c~~Lr~lDL~~Cp~ 217 (326)
|++|+|+++ .+++.+...++..+.. ...++.+.+....+... |+. ..+ .+++.|+.|||.+++.
T Consensus 246 L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~-g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 246 LRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD-AVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH-HHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred cCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH-HHHHHHHHHHhcCCCceEEEccCCcC
Confidence 888888887 5777777777776533 44444444444433321 111 111 4568888888888775
No 21
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.15 E-value=2.9e-06 Score=80.37 Aligned_cols=184 Identities=15% Similarity=0.066 Sum_probs=97.6
Q ss_pred CCCCCHHHHHHHHccCC--hHHH--HH--Hhh-cCHHhhhhhccCCCCceeeeecCCCCCCCC---HHHHHHHHhhcCCC
Q 020465 26 EPRPPHEALFLALAYLP--LFEL--LA--MSV-VCLSLRDAVNKDILPWLNIIVDRPLNRRLS---DEILMKITSKANGR 95 (326)
Q Consensus 26 ~~~LP~E~Ll~IfsyL~--~~dL--l~--~s~-VCr~Wr~lv~~dp~LW~~ldL~~~l~~~it---D~~L~~l~~~~~~~ 95 (326)
....+.+.+...|+.++ ++.| -. ... ....+..++..-+.--+.+++.. .+++ ...+.......+++
T Consensus 34 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~---n~l~~~~~~~l~~~l~~~~~~ 110 (362)
T 3goz_A 34 LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG---NFLSYKSSDELVKTLAAIPFT 110 (362)
T ss_dssp GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS---SCGGGSCHHHHHHHHHTSCTT
T ss_pred CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC---CcCChHHHHHHHHHHHhCCCC
Confidence 34566666667776554 2211 11 111 12223333222223345666642 2233 33344433333357
Q ss_pred ccEEecCCCCCCCHHHHHHHHHh----CCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHH
Q 020465 96 LTTLALINCVRITNAGLQRVIEK----NPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTL 171 (326)
Q Consensus 96 L~~L~Ls~C~~ITD~gL~~v~~~----cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~L 171 (326)
|+.|+|+++ .|++.+...++.. +++|++|+|+++ ++++.|+....+.+...-++|++|+|+++ ++++.....+
T Consensus 111 L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l 187 (362)
T 3goz_A 111 ITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAEL 187 (362)
T ss_dssp CCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHH
T ss_pred ccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHH
Confidence 888888887 4677666555443 458888888886 57777743333333333347888888887 6777776677
Q ss_pred HHhcccCc-chhhhhccCCcccccCCcccc---c-cCCCCceeeecCCCC
Q 020465 172 HSHLKLNS-SRQNEQKRQPILYHKARHYPV---L-VNRENDHSIDVEICP 216 (326)
Q Consensus 172 a~~l~~~~-~l~~l~~~~~~~~~~~gl~~l---~-~~c~~Lr~lDL~~Cp 216 (326)
+..+.... .++.+.+....+.+ .|...+ + .....|+.|||..+.
T Consensus 188 ~~~l~~~~~~L~~L~Ls~N~i~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 188 AKFLASIPASVTSLDLSANLLGL-KSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHhCCCCCCEEECCCCCCCh-hHHHHHHHHHhcCCCCceEEECcCCC
Confidence 66655542 44444555444332 222111 1 224578888888775
No 22
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.11 E-value=5.4e-06 Score=78.46 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=33.3
Q ss_pred CccEEecCCCCCCCHHHHHHHHH---hCC-CccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHH
Q 020465 95 RLTTLALINCVRITNAGLQRVIE---KNP-FIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRT 170 (326)
Q Consensus 95 ~L~~L~Ls~C~~ITD~gL~~v~~---~cp-~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~ 170 (326)
+|+.|+|+++ .|++.|...++. ..+ +|++|+|+++ ++++.+.....+.+....++|++|+|+++ .+++.++..
T Consensus 139 ~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~ 215 (362)
T 3goz_A 139 SITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAE 215 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHH
T ss_pred ceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHH
Confidence 4555555554 444444433322 222 5555555554 34444422111112111135555555555 355544444
Q ss_pred HHHhc
Q 020465 171 LHSHL 175 (326)
Q Consensus 171 La~~l 175 (326)
++..+
T Consensus 216 l~~~l 220 (362)
T 3goz_A 216 LAYIF 220 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 23
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.11 E-value=1.1e-05 Score=71.90 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=82.8
Q ss_pred eeeeecCCCCCCCCHHHHHHHHhh--cCCCccEEecCCCCCCCHHHHHHHH---HhCCCccEEEeCCCCCCCHHHHHHHH
Q 020465 68 LNIIVDRPLNRRLSDEILMKITSK--ANGRLTTLALINCVRITNAGLQRVI---EKNPFIKKLYIPGCTGLSPQGVIEAV 142 (326)
Q Consensus 68 ~~ldL~~~l~~~itD~~L~~l~~~--~~~~L~~L~Ls~C~~ITD~gL~~v~---~~cp~L~~L~Ls~C~~ITd~gi~~~L 142 (326)
+.++|.. +..|.|+....|+.. ....|+.|+|+++ .|+|+|..+++ +.+..|++|+|++. +|+++|+..+.
T Consensus 44 ~~L~L~~--nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala 119 (197)
T 1pgv_A 44 KEVNINN--MKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL 119 (197)
T ss_dssp CEEECTT--CCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred cEEECCC--CCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHH
Confidence 4566631 137889988777652 3468999999998 79999987665 47889999999885 69999955544
Q ss_pred HHHHhcCCCCCeeeccCcc--ccchHHHHHHHHhcccCcchh
Q 020465 143 EKLSENDHTLEILHISGVY--NITKEHLRTLHSHLKLNSSRQ 182 (326)
Q Consensus 143 ~~L~~~C~~Lk~L~LsgC~--~lTd~~l~~La~~l~~~~~l~ 182 (326)
++|. ....|++|+|++.. .+++.+-.+|++.+..+.++.
T Consensus 120 ~aL~-~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~ 160 (197)
T 1pgv_A 120 RSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL 160 (197)
T ss_dssp HHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCC
T ss_pred HHHh-hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcC
Confidence 4443 34569999998763 589998899999888877663
No 24
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.10 E-value=5.8e-07 Score=85.82 Aligned_cols=50 Identities=12% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHccCChHHHHHHhhcCHHhhhhhccC-CCCceeeeecC
Q 020465 24 EEEPRPPHEALFLALAYLPLFELLAMSVVCLSLRDAVNKD-ILPWLNIIVDR 74 (326)
Q Consensus 24 ~~~~~LP~E~Ll~IfsyL~~~dLl~~s~VCr~Wr~lv~~d-p~LW~~ldL~~ 74 (326)
+....||+|++++||+||+.+||+++++|||+|+++ +.+ +.+|+.+-+..
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~-~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI-IRKSTSLWKKLLISE 63 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH-HTTCHHHHHHHHHHT
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHhcc
Confidence 455679999999999999999999999999999999 555 89999987643
No 25
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.05 E-value=1.5e-06 Score=82.97 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHccCChHHHHHHhhcCHHhhhhhccCCCCceeeee
Q 020465 23 NEEEPRPPHEALFLALAYLPLFELLAMSVVCLSLRDAVNKDILPWLNIIV 72 (326)
Q Consensus 23 ~~~~~~LP~E~Ll~IfsyL~~~dLl~~s~VCr~Wr~lv~~dp~LW~~ldL 72 (326)
.+....||+|++.+||+||+.+||+++++|||+|+.+ +.++.+|+.+-.
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~-~~~~~~w~~~~~ 64 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL-AEDNLLWREKCK 64 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH-HTCSHHHHHHHT
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh-cCchhHhhhhee
Confidence 4667889999999999999999999999999999999 788999997643
No 26
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.01 E-value=8.3e-07 Score=84.82 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=43.2
Q ss_pred CCCCCCCHH----HHHHHHccCChHHHHHHhhcCHHhhhhhccCCCCceeeee
Q 020465 24 EEEPRPPHE----ALFLALAYLPLFELLAMSVVCLSLRDAVNKDILPWLNIIV 72 (326)
Q Consensus 24 ~~~~~LP~E----~Ll~IfsyL~~~dLl~~s~VCr~Wr~lv~~dp~LW~~ldL 72 (326)
+....||+| ++.+||+||+.++|+++++|||+|+++ +.|+.+|+.+-.
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~-~~~~~~w~~~~~ 60 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV-TSDGMLWKKLIE 60 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH-HHHTTHHHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hcChHHHHHHHH
Confidence 455679999 999999999999999999999999999 679999998743
No 27
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.65 E-value=6.7e-05 Score=72.26 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHhhcCCCccEEecC
Q 020465 79 RLSDEILMKITSKANGRLTTLALI 102 (326)
Q Consensus 79 ~itD~~L~~l~~~~~~~L~~L~Ls 102 (326)
.++++.+..++...-++|++|+|.
T Consensus 204 ~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 204 GLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCChHHHHHHHHccCCCCcEEEEe
Confidence 466777766654223566666653
No 28
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.39 E-value=4.4e-05 Score=73.57 Aligned_cols=121 Identities=11% Similarity=0.071 Sum_probs=77.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHH-hCCCccEEEeCCCCC--CCHHHHHHHHHHHH--hcCCCCCeeeccCccccchHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIE-KNPFIKKLYIPGCTG--LSPQGVIEAVEKLS--ENDHTLEILHISGVYNITKEHL 168 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~-~cp~L~~L~Ls~C~~--ITd~gi~~~L~~L~--~~C~~Lk~L~LsgC~~lTd~~l 168 (326)
++|++|+|..| .|+++++..++. .+|+|++|+|+.... ..+.++ ..+..+. ..+|+|++|+|++| .+++...
T Consensus 193 ~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~-~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~ 269 (362)
T 2ra8_A 193 PNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM-NVFRPLFSKDRFPNLKWLGIVDA-EEQNVVV 269 (362)
T ss_dssp TTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG-GGTGGGSCTTTCTTCCEEEEESC-TTHHHHH
T ss_pred CCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhH-HHHHHHHhcCCCCCcCEEeCCCC-CCchHHH
Confidence 68999999876 699999998875 689999999964211 112220 0022221 35799999999988 6787777
Q ss_pred HHHHHhcccCcchhhhhccCCcccccCCccccc---cCCCCceeeecCCCCCCcc
Q 020465 169 RTLHSHLKLNSSRQNEQKRQPILYHKARHYPVL---VNRENDHSIDVEICPSCSE 220 (326)
Q Consensus 169 ~~La~~l~~~~~l~~l~~~~~~~~~~~gl~~l~---~~c~~Lr~lDL~~Cp~c~~ 220 (326)
.+++.. +....++.|.+... .+++.|..+++ .+++.|+.|||..|+ +++
T Consensus 270 ~~la~a-~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d 321 (362)
T 2ra8_A 270 EMFLES-DILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSD 321 (362)
T ss_dssp HHHHHC-SSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCH
T ss_pred HHHHhC-ccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCH
Confidence 777764 22333334444332 23333432332 457889999999885 444
No 29
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.13 E-value=0.00024 Score=61.24 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=65.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .+++-. ....+++|++|+|+++ ++++.+ ...+ ..+++|++|+|+++ .+++.....++
T Consensus 66 ~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n-~l~~~~----~~~l-~~l~~L~~L~Ls~n-~i~~~~~~~l~- 133 (197)
T 4ezg_A 66 HNIKDLTINNI-HATNYN---PISGLSNLERLRIMGK-DVTSDK----IPNL-SGLTSLTLLDISHS-AHDDSILTKIN- 133 (197)
T ss_dssp TTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECT-TCBGGG----SCCC-TTCTTCCEEECCSS-BCBGGGHHHHT-
T ss_pred CCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECC-ccCccc----Chhh-cCCCCCCEEEecCC-ccCcHhHHHHh-
Confidence 58889999888 666532 3446788888888886 477654 3333 35788888888887 67765554443
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
.++. ++.+.+....++++- ..+..++.|+.+||..+.
T Consensus 134 ~l~~---L~~L~L~~n~~i~~~---~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 134 TLPK---VNSIDLSYNGAITDI---MPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp TCSS---CCEEECCSCTBCCCC---GGGGGCSSCCEEECTTBC
T ss_pred hCCC---CCEEEccCCCCcccc---HhhcCCCCCCEEECCCCC
Confidence 2222 333344444322221 234667888888888775
No 30
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.00 E-value=0.00039 Score=59.83 Aligned_cols=104 Identities=11% Similarity=-0.017 Sum_probs=70.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .|++.+...+ ..+++|+.|+|+++ ++++.+ ...+ ...++|++|+|+++..+++..
T Consensus 88 ~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~----~~~l-~~l~~L~~L~L~~n~~i~~~~------ 153 (197)
T 4ezg_A 88 SNLERLRIMGK-DVTSDKIPNL-SGLTSLTLLDISHS-AHDDSI----LTKI-NTLPKVNSIDLSYNGAITDIM------ 153 (197)
T ss_dssp TTCCEEEEECT-TCBGGGSCCC-TTCTTCCEEECCSS-BCBGGG----HHHH-TTCSSCCEEECCSCTBCCCCG------
T ss_pred CCCCEEEeECC-ccCcccChhh-cCCCCCCEEEecCC-ccCcHh----HHHH-hhCCCCCEEEccCCCCccccH------
Confidence 68999999997 6776554443 36899999999997 588766 4445 468999999999996577631
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEIC 215 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~C 215 (326)
.+.....++.+.+....+.+ + ..+..++.|+.+|+.+-
T Consensus 154 ~l~~l~~L~~L~l~~n~i~~---~-~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 154 PLKTLPELKSLNIQFDGVHD---Y-RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGGGCSSCCEEECTTBCCCC---C-TTGGGCSSCCEEEECBC
T ss_pred hhcCCCCCCEEECCCCCCcC---h-HHhccCCCCCEEEeeCc
Confidence 23333333334444433332 1 13467888999998864
No 31
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=96.84 E-value=0.00024 Score=59.25 Aligned_cols=56 Identities=29% Similarity=0.334 Sum_probs=25.2
Q ss_pred CccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 95 RLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 95 ~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
+|+.|+|+++. |++. .....+++|++|+|+++. ++.. +..+..++++|++|+|+++
T Consensus 50 ~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 50 NLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGG-----LDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp GCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSC-----CCHHHHHCTTCCEEECBSS
T ss_pred CCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchH-----HHHHHhhCCCCCEEeccCC
Confidence 45555555552 4332 223344555555555542 3321 0112233455555555555
No 32
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.83 E-value=0.00026 Score=57.85 Aligned_cols=61 Identities=30% Similarity=0.313 Sum_probs=32.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccch
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITK 165 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd 165 (326)
++|+.|+|+++ .|++. .....+++|++|+|+++. ++.. +..+...+++|++|+++++ .+++
T Consensus 42 ~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-----~~~~~~~l~~L~~L~ls~N-~i~~ 102 (149)
T 2je0_A 42 EELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR-VSGG-----LEVLAEKCPNLTHLNLSGN-KIKD 102 (149)
T ss_dssp TTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC-CCSC-----THHHHHHCTTCCEEECTTS-CCCS
T ss_pred CCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc-ccch-----HHHHhhhCCCCCEEECCCC-cCCC
Confidence 46666666666 44443 333445666666666653 4431 1122234566777777665 3444
No 33
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=96.28 E-value=0.00076 Score=56.20 Aligned_cols=112 Identities=17% Similarity=0.116 Sum_probs=63.2
Q ss_pred hcCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHH
Q 020465 91 KANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRT 170 (326)
Q Consensus 91 ~~~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~ 170 (326)
..+++|+.|+|+++ .|++..+......+++|+.|+|+++. ++... .....++|++|+|+++ .+++. +..
T Consensus 21 ~~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~Ls~N-~l~~~-~~~ 89 (168)
T 2ell_A 21 RTPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVG-LISVS-------NLPKLPKLKKLELSEN-RIFGG-LDM 89 (168)
T ss_dssp SCTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSC-CCCCS-------SCCCCSSCCEEEEESC-CCCSC-CCH
T ss_pred CCcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCC-CCChh-------hhccCCCCCEEECcCC-cCchH-HHH
Confidence 33467888888887 46544444444667888888888874 54321 1135678888888877 34442 333
Q ss_pred HHHhcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 171 LHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 171 La~~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
+...++.+.. +.+....+.+-. ....+..++.|+.+||..++.
T Consensus 90 ~~~~l~~L~~---L~Ls~N~l~~~~-~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 90 LAEKLPNLTH---LNLSGNKLKDIS-TLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp HHHHCTTCCE---EECBSSSCCSSG-GGGGGSSCSCCCEEECCSSGG
T ss_pred HHhhCCCCCE---EeccCCccCcch-hHHHHhcCCCCCEEEeeCCcC
Confidence 3333444332 233333222211 112345677788888887764
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=96.12 E-value=0.0054 Score=56.61 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=54.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .+++..- ...+++|++|+|+++ .+++-. . ....++|++|+++++ .+++. .
T Consensus 221 ~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~------~-~~~l~~L~~L~l~~n-~l~~~------~ 281 (347)
T 4fmz_A 221 TRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTN-QISDIN------A-VKDLTKLKMLNVGSN-QISDI------S 281 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG------G-GTTCTTCCEEECCSS-CCCCC------G
T ss_pred CcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCC-ccCCCh------h-HhcCCCcCEEEccCC-ccCCC------h
Confidence 57888888887 4444222 456778888888876 344321 1 135677777777777 45542 1
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
.+.....++.+.+....+.... ...+..++.|+.+||..|+
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNED--MEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGG--HHHHHTCTTCSEEECCSSS
T ss_pred hhcCCCCCCEEECcCCcCCCcC--hhHhhccccCCEEEccCCc
Confidence 1222222223333333221110 0123556777777777776
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=95.87 E-value=0.014 Score=53.86 Aligned_cols=102 Identities=17% Similarity=0.061 Sum_probs=64.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .|++..- ...+++|++|+|+++ ++++-. . ..++++|++|+++++ .+++..-
T Consensus 66 ~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~~------~-~~~l~~L~~L~l~~n-~i~~~~~----- 127 (347)
T 4fmz_A 66 TNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDIS------A-LQNLTNLRELYLNED-NISDISP----- 127 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG------G-GTTCTTCSEEECTTS-CCCCCGG-----
T ss_pred CCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCch------H-HcCCCcCCEEECcCC-cccCchh-----
Confidence 68999999998 5665322 667899999999998 455422 1 257899999999988 4544211
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
+.....++.+.+........ ...+..+..|+.+++..|..
T Consensus 128 -~~~l~~L~~L~l~~n~~~~~---~~~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp -GTTCTTCCEEECTTCTTCCC---CGGGTTCTTCCEEECCSSCC
T ss_pred -hccCCceeEEECCCCCCccc---ccchhhCCCCcEEEecCCCc
Confidence 22222233334333322221 12356788899999988763
No 36
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=95.84 E-value=0.012 Score=47.82 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=47.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccch
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITK 165 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd 165 (326)
++|+.|+|+++ .|++. +..+...+++|++|+|+++. +++.. .-.....+++|++|+++++ .+++
T Consensus 64 ~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~----~~~~~~~l~~L~~L~l~~N-~l~~ 127 (149)
T 2je0_A 64 NKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLS----TIEPLKKLENLKSLDLFNC-EVTN 127 (149)
T ss_dssp TTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTSC-CCSHH----HHGGGGGCTTCCEEECTTC-GGGG
T ss_pred CCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCCc-CCChH----HHHHHhhCCCCCEEeCcCC-cccc
Confidence 68999999998 46543 45566679999999999974 77643 1122357899999999998 4554
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=95.71 E-value=0.024 Score=52.02 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=59.7
Q ss_pred HHHHHHhhcCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCH-HHHHHHHHHHH-hcCCCCCeeeccCcc
Q 020465 84 ILMKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSP-QGVIEAVEKLS-ENDHTLEILHISGVY 161 (326)
Q Consensus 84 ~L~~l~~~~~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd-~gi~~~L~~L~-~~C~~Lk~L~LsgC~ 161 (326)
.+..+.....++|+.|+|+++. |+...- ......++|++|+|+++. ++. .++ ...+. ...++|++|+|+++
T Consensus 139 ~~~~l~~~~~~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~~~~~l~~L~~L~L~~N- 211 (312)
T 1wwl_A 139 WLAELQQWLKPGLKVLSIAQAH-SLNFSC-EQVRVFPALSTLDLSDNP-ELGERGL---ISALCPLKFPTLQVLALRNA- 211 (312)
T ss_dssp HHHHHHTTCCTTCCEEEEESCS-CCCCCT-TTCCCCSSCCEEECCSCT-TCHHHHH---HHHSCTTSCTTCCEEECTTS-
T ss_pred HHHHHHHhhcCCCcEEEeeCCC-CccchH-HHhccCCCCCEEECCCCC-cCcchHH---HHHHHhccCCCCCEEECCCC-
Confidence 4444433323577888877763 332111 112356778888888764 332 231 12221 45678888888877
Q ss_pred ccchH--HHHHHHHhcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 162 NITKE--HLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 162 ~lTd~--~l~~La~~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
.++.. ....+...+.... .+.+....+.+... ...+.....|+.+||..+.
T Consensus 212 ~l~~~~~~~~~~~~~l~~L~---~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 212 GMETPSGVCSALAAARVQLQ---GLDLSHNSLRDAAG-APSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CCCCHHHHHHHHHHTTCCCS---EEECTTSCCCSSCC-CSCCCCCTTCCEEECTTSC
T ss_pred cCcchHHHHHHHHhcCCCCC---EEECCCCcCCcccc-hhhhhhcCCCCEEECCCCc
Confidence 45531 1223333333332 22333333222110 1223345677777777664
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=95.58 E-value=0.003 Score=58.92 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.6
Q ss_pred CCccEEecCCCCC
Q 020465 94 GRLTTLALINCVR 106 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ 106 (326)
++|+.|+|++|..
T Consensus 150 ~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 150 NRLRELSIRACPE 162 (328)
T ss_dssp TTCCEEEEEEETT
T ss_pred cCCCEEECCCCCC
Confidence 5788888887753
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=95.37 E-value=0.0018 Score=60.52 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=9.7
Q ss_pred ccCCCCceeeecCCCCC
Q 020465 201 LVNRENDHSIDVEICPS 217 (326)
Q Consensus 201 ~~~c~~Lr~lDL~~Cp~ 217 (326)
+..+..|+.|||..|..
T Consensus 225 l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTA 241 (328)
T ss_dssp GGGCTTCCEEECTTCTT
T ss_pred hccCCCCCEEECcCCcc
Confidence 34555666666665554
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=95.24 E-value=0.024 Score=52.63 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=66.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++. ++... ..+....++|++|+|+++. ++...... +. .......|+.++|++. .+++..+..+..
T Consensus 198 ~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~-l~-~~~~~~~l~~l~L~~~-~l~~~~l~~l~~ 271 (353)
T 2z80_A 198 QNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDTD-LDTFHFSE-LS-TGETNSLIKKFTFRNV-KITDESLFQVMK 271 (353)
T ss_dssp SEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESCB-CTTCCCC--------CCCCCCEEEEESC-BCCHHHHHHHHH
T ss_pred ccCCeecCCCCc-cccch-hhhhhhcccccEEECCCCc-cccccccc-cc-cccccchhhccccccc-cccCcchhhhHH
Confidence 356666666653 43322 2234456777777777763 44322000 11 1234567777888776 678877777776
Q ss_pred hcccCcchhhhhccCCcccccCCccc-cccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYP-VLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~-l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.....++.+.+....+.. +-. ++..++.|+.+||..+|.
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKS---VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCB
T ss_pred HHhcccCCCEEECCCCCCCc---cCHHHHhcCCCCCEEEeeCCCc
Confidence 66655555445555443332 111 246789999999999986
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=94.98 E-value=0.06 Score=52.66 Aligned_cols=62 Identities=18% Similarity=0.096 Sum_probs=34.3
Q ss_pred CCccEEecCCCCCCCHHHHHHH--HHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRV--IEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v--~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++ .+++...... ...+|+|++|+|+++ +++.-.. ........++|++|+|+++
T Consensus 334 ~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~---~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 334 KSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQK---TGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp TTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHH---HHHHGGGCTTCCEEECTTC
T ss_pred ccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-ccccccc---chhhhhcCCCCCEEECCCC
Confidence 46777777776 4665443321 245677777777776 3443210 0112345667777777766
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=94.96 E-value=0.0081 Score=57.48 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=56.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
.+|+.|+|+++.....- -.....++++|++|+|+++. ++... ...+ .+.++|++|+|+++ ++++..+.. .
T Consensus 54 ~~L~~L~L~~n~~~~~i-~~~~~~~l~~L~~L~Ls~n~-l~~~~----~~~~-~~l~~L~~L~L~~n-~l~~~~~~~--~ 123 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDYNQ-FLQLE----TGAF-NGLANLEVLTLTQC-NLDGAVLSG--N 123 (455)
T ss_dssp TTCCEEECCCCSTTCEE-CTTTTTTCTTCCEEECTTCT-TCEEC----TTTT-TTCTTCCEEECTTS-CCBTHHHHS--S
T ss_pred ccccEEECcCCcccceE-CcccccccccCCEEeCCCCc-cCccC----hhhc-cCcccCCEEeCCCC-CCCccccCc--c
Confidence 57888888877421110 01123456788888888763 44321 1111 35678888888877 555433221 1
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
.+.....++.+.+....+.... -...+.++..|+.+||..+.
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 124 FFKPLTSLEMLVLRDNNIKKIQ-PASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTTTCTTCCEEECCSSBCCSCC-CCGGGGGCTTCCEEECTTCC
T ss_pred cccCcccCCEEECCCCccCccC-cccccCCCCcccEEeCCCCc
Confidence 1222222333333333322211 01124567778888887765
No 43
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=94.89 E-value=0.03 Score=51.12 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=8.7
Q ss_pred ccCCCCceeeecCCC
Q 020465 201 LVNRENDHSIDVEIC 215 (326)
Q Consensus 201 ~~~c~~Lr~lDL~~C 215 (326)
+..+..|+.+||+.+
T Consensus 174 l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKN 188 (291)
T ss_dssp GTTCTTCCEEECCSS
T ss_pred hcCCCccCEEECCCC
Confidence 345566666666655
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=94.86 E-value=0.04 Score=50.52 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=45.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHH--HhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccch
Q 020465 94 GRLTTLALINCVRITNAGLQRVI--EKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITK 165 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~--~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd 165 (326)
++|+.|+|+++....+.++..-. ...++|++|+|+++ +++..+- ....+..+.++|++|+|++. .+++
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~~~~l~~L~~L~Ls~N-~l~~ 242 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSG--VCSALAAARVQLQGLDLSHN-SLRD 242 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHH--HHHHHHHTTCCCSEEECTTS-CCCS
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHH--HHHHHHhcCCCCCEEECCCC-cCCc
Confidence 58999999988544444443333 67889999999987 4663221 13344567789999999987 4544
No 45
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=94.79 E-value=0.026 Score=51.87 Aligned_cols=16 Identities=13% Similarity=0.082 Sum_probs=10.1
Q ss_pred ccCCCCceeeecCCCC
Q 020465 201 LVNRENDHSIDVEICP 216 (326)
Q Consensus 201 ~~~c~~Lr~lDL~~Cp 216 (326)
+..+..|+.+||..+.
T Consensus 169 l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 169 LANLSKLTTLKADDNK 184 (308)
T ss_dssp GTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCc
Confidence 3556667777776654
No 46
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=94.73 E-value=0.019 Score=52.54 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=58.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHH--HhcCCCCCeeeccCccccchH--HH
Q 020465 93 NGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKL--SENDHTLEILHISGVYNITKE--HL 168 (326)
Q Consensus 93 ~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L--~~~C~~Lk~L~LsgC~~lTd~--~l 168 (326)
.++|+.|+|+++. |+...- ......++|++|+|+++.-.++.+ +..- ....++|++|+|+++ +++.. ..
T Consensus 144 ~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~ 216 (310)
T 4glp_A 144 KPGLKVLSIAQAH-SPAFSC-EQVRAFPALTSLDLSDNPGLGERG----LMAALCPHKFPAIQNLALRNT-GMETPTGVC 216 (310)
T ss_dssp CSCCCEEEEECCS-SCCCCT-TSCCCCTTCCEEECCSCTTCHHHH----HHTTSCTTSSCCCCSCBCCSS-CCCCHHHHH
T ss_pred ccCCCEEEeeCCC-cchhhH-HHhccCCCCCEEECCCCCCccchh----hhHHHhhhcCCCCCEEECCCC-CCCchHHHH
Confidence 3688899988873 332110 122357888889988875333334 2111 135688889999887 56532 22
Q ss_pred HHHHHhcccCcchhhhhccCCccccc--CCccccccCCCCceeeecCCCC
Q 020465 169 RTLHSHLKLNSSRQNEQKRQPILYHK--ARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 169 ~~La~~l~~~~~l~~l~~~~~~~~~~--~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
..+...+..+. .+.+....+... .++ ..+...+.|+.+||..+.
T Consensus 217 ~~l~~~l~~L~---~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 217 AALAAAGVQPH---SLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp HHHHHHTCCCS---SEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSC
T ss_pred HHHHhcCCCCC---EEECCCCCCCccchhhH-HhccCcCcCCEEECCCCC
Confidence 22333444433 233333332221 011 111122577777777654
No 47
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=94.64 E-value=0.0058 Score=51.38 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=32.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++ .|++- .....+++|+.|+|+++ +++.-. ..+...+++|++|+|++.
T Consensus 42 ~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN-RICRIG-----EGLDQALPDLTELILTNN 98 (176)
T ss_dssp TCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS-CCCEEC-----SCHHHHCTTCCEEECCSC
T ss_pred CCCCEEECCCC-CCCcc---cccccCCCCCEEECCCC-cccccC-----cchhhcCCCCCEEECCCC
Confidence 36777777776 45542 22345667777777775 354221 011235667777777766
No 48
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=94.55 E-value=0.048 Score=49.74 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=15.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
++|+.|+|+++ .|++.. . ...+++|++|+|+++
T Consensus 68 ~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 68 PNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDEN 100 (291)
T ss_dssp TTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS
T ss_pred CCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCC
Confidence 35555555554 333211 1 334555555555554
No 49
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=94.47 E-value=0.017 Score=53.09 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=55.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .|++- .. ...+++|++|+|+++ +++... . ....++|++|+|+++ .+++.. .
T Consensus 107 ~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~------~-l~~l~~L~~L~l~~n-~l~~~~--~--- 168 (308)
T 1h6u_A 107 QSIKTLDLTST-QITDV--TP-LAGLSNLQVLYLDLN-QITNIS------P-LAGLTNLQYLSIGNA-QVSDLT--P--- 168 (308)
T ss_dssp TTCCEEECTTS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCCG------G-GGGCTTCCEEECCSS-CCCCCG--G---
T ss_pred CCCCEEECCCC-CCCCc--hh-hcCCCCCCEEECCCC-ccCcCc------c-ccCCCCccEEEccCC-cCCCCh--h---
Confidence 57888888887 45542 12 456788888888887 354432 1 245678888888877 455421 1
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
+.....++.+.+....+.+ + ..+...+.|+.+||+.+.
T Consensus 169 -l~~l~~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISD---I-SPLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCC---C-GGGGGCTTCCEEECTTSC
T ss_pred -hcCCCCCCEEECCCCccCc---C-hhhcCCCCCCEEEccCCc
Confidence 2222222223333222211 1 113556677777777664
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=94.36 E-value=0.015 Score=52.36 Aligned_cols=15 Identities=0% Similarity=-0.194 Sum_probs=9.7
Q ss_pred cCCCCceeeecCCCC
Q 020465 202 VNRENDHSIDVEICP 216 (326)
Q Consensus 202 ~~c~~Lr~lDL~~Cp 216 (326)
..+..|+.+||..+.
T Consensus 178 ~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQ 192 (272)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCccCCEEECCCCc
Confidence 456667777777654
No 51
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=94.17 E-value=0.045 Score=55.87 Aligned_cols=100 Identities=15% Similarity=0.050 Sum_probs=46.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .|++- . ....+++|+.|+|+++. +++-. . ...+++|++|+|+++ .+++. .
T Consensus 87 ~~L~~L~Ls~N-~l~~l--~-~l~~l~~L~~L~Ls~N~-l~~l~------~-l~~l~~L~~L~Ls~N-~l~~l------~ 147 (605)
T 1m9s_A 87 KNLGWLFLDEN-KIKDL--S-SLKDLKKLKSLSLEHNG-ISDIN------G-LVHLPQLESLYLGNN-KITDI------T 147 (605)
T ss_dssp TTCCEEECCSS-CCCCC--T-TSTTCTTCCEEECTTSC-CCCCG------G-GGGCTTCSEEECCSS-CCCCC------G
T ss_pred CCCCEEECcCC-CCCCC--h-hhccCCCCCEEEecCCC-CCCCc------c-ccCCCccCEEECCCC-ccCCc------h
Confidence 45666666655 33331 1 23345666666666653 33211 1 134566666666665 34431 1
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
.+.....++.|.+....+. ++.. +..+..|+.|||..+.
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~---~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQIS---DIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp GGGSCTTCSEEECCSSCCC---CCGG-GTTCTTCCEEECCSSC
T ss_pred hhcccCCCCEEECcCCcCC---Cchh-hccCCCCCEEECcCCC
Confidence 2222222223333332222 1222 4566777777777664
No 52
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=94.16 E-value=0.041 Score=56.16 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=26.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++ .|++.. . ...+++|+.|+|+++. +++- ..+ ..+++|++|+|+++
T Consensus 65 ~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l------~~l-~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 65 PNVTKLFLNGN-KLTDIK--P-LTNLKNLGWLFLDENK-IKDL------SSL-KDLKKLKSLSLEHN 119 (605)
T ss_dssp TTCCEEECTTS-CCCCCG--G-GGGCTTCCEEECCSSC-CCCC------TTS-TTCTTCCEEECTTS
T ss_pred CCCCEEEeeCC-CCCCCh--h-hccCCCCCEEECcCCC-CCCC------hhh-ccCCCCCEEEecCC
Confidence 45666666555 233211 1 3455666666666552 3321 111 24455666666655
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=94.16 E-value=0.011 Score=54.36 Aligned_cols=16 Identities=13% Similarity=-0.130 Sum_probs=9.1
Q ss_pred cCCCCceeeecCCCCC
Q 020465 202 VNRENDHSIDVEICPS 217 (326)
Q Consensus 202 ~~c~~Lr~lDL~~Cp~ 217 (326)
...+.|+.+||..++.
T Consensus 234 ~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCCTTCCEEECTTCCC
T ss_pred hcCCCCCEEEccCCCc
Confidence 3455566666666554
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=94.16 E-value=0.04 Score=53.39 Aligned_cols=101 Identities=19% Similarity=0.045 Sum_probs=58.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .+++.. . ...+++|++|+|+++. ++... . ...+++|++|+|+++ .+++..- ..
T Consensus 265 ~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~------~-~~~l~~L~~L~L~~n-~l~~~~~---~~ 328 (466)
T 1o6v_A 265 TKLTELKLGAN-QISNIS--P-LAGLTALTNLELNENQ-LEDIS------P-ISNLKNLTYLTLYFN-NISDISP---VS 328 (466)
T ss_dssp TTCSEEECCSS-CCCCCG--G-GTTCTTCSEEECCSSC-CSCCG------G-GGGCTTCSEEECCSS-CCSCCGG---GG
T ss_pred CCCCEEECCCC-ccCccc--c-ccCCCccCeEEcCCCc-ccCch------h-hcCCCCCCEEECcCC-cCCCchh---hc
Confidence 68889999887 444321 1 4567888888888873 54322 1 246788888888887 4554211 12
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.++. ++.+.+....+.+ + ..+..+..|+.+||..|+.
T Consensus 329 ~l~~---L~~L~l~~n~l~~---~-~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 329 SLTK---LQRLFFYNNKVSD---V-SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp GCTT---CCEEECCSSCCCC---C-GGGTTCTTCCEEECCSSCC
T ss_pred cCcc---CCEeECCCCccCC---c-hhhccCCCCCEEeCCCCcc
Confidence 2222 2233333332222 1 2345677888888887753
No 55
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=94.04 E-value=0.027 Score=50.74 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=18.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
++|+.|+|+++ .|++..- ...+++|++|+|+++
T Consensus 63 ~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 63 TNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN 95 (263)
T ss_dssp TTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS
T ss_pred CCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC
Confidence 46666666665 3443221 345666666666665
No 56
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=93.92 E-value=0.042 Score=49.44 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=43.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccch
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITK 165 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd 165 (326)
.+|+.|+|+++ .|++-. -...+++|++|+|+++ ++++.. . ....++|++|+|++. .+++
T Consensus 41 ~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i~~~~------~-l~~l~~L~~L~L~~N-~l~~ 99 (263)
T 1xeu_A 41 SGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QISDLS------P-LKDLTKLEELSVNRN-RLKN 99 (263)
T ss_dssp TTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCG------G-GTTCSSCCEEECCSS-CCSC
T ss_pred CcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-ccCCCh------h-hccCCCCCEEECCCC-ccCC
Confidence 58999999998 566522 3457899999999997 466544 1 346789999999987 4444
No 57
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=93.88 E-value=0.039 Score=50.42 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=48.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHH--HhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccch
Q 020465 94 GRLTTLALINCVRITNAGLQRVI--EKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITK 165 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~--~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd 165 (326)
++|++|+|+++.-.++.++.... ...|+|++|+|+++ +++.-+- ....+..+.++|++|+|++. .+++
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~~l~~L~~L~Ls~N-~l~~ 238 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTG--VCAALAAAGVQPHSLDLSHN-SLRA 238 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHH--HHHHHHHHTCCCSSEECTTS-CCCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHH--HHHHHHhcCCCCCEEECCCC-CCCc
Confidence 68999999998656666664332 57899999999998 4663221 13334567899999999987 4544
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=93.86 E-value=0.034 Score=54.25 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=29.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++ .+++.... .....++|++|+|+++. ++.-+. +.......++|++|+|+++
T Consensus 324 ~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~l~~---~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 324 SPFLHLDFSNN-LLTDTVFE-NCGHLTELETLILQMNQ-LKELSK---IAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp CCCCEEECCSS-CCCTTTTT-TCCCCSSCCEEECCSSC-CCBHHH---HHHHHTTCTTCCEEECCSS
T ss_pred CcccEEEeECC-ccChhhhh-hhccCCCCCEEEccCCc-cCcccc---chHHHhhCCCCCEEECCCC
Confidence 46777777666 44442111 12345666666666653 443110 1112234556666666655
No 59
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=93.75 E-value=0.011 Score=49.67 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHhh-cCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeec
Q 020465 79 RLSDEILMKITSK-ANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHI 157 (326)
Q Consensus 79 ~itD~~L~~l~~~-~~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~L 157 (326)
++|.+.+...... -..+|+.|+|+++ .|++ +..+....|+|+.|+|+++ +++.-. . ....++|++|+|
T Consensus 3 ~lt~~~i~~~~~~~~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~~------~-l~~l~~L~~L~L 71 (176)
T 1a9n_A 3 KLTAELIEQAAQYTNAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDN-EIRKLD------G-FPLLRRLKTLLV 71 (176)
T ss_dssp CCCHHHHHTSCEEECTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSS-CCCEEC------C-CCCCSSCCEEEC
T ss_pred cccHHHHHHHHhcCCcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCC-CCCccc------c-cccCCCCCEEEC
Confidence 4566655543221 1358999999998 5663 3344555679999999997 466421 1 146789999999
Q ss_pred cCccccchHHHHHHHHhcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCCC
Q 020465 158 SGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPSC 218 (326)
Q Consensus 158 sgC~~lTd~~l~~La~~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~c 218 (326)
++. .++... ..+...++... .+.+....+.+-.. ...+..++.|+.+||..++..
T Consensus 72 s~N-~l~~~~-~~~~~~l~~L~---~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 72 NNN-RICRIG-EGLDQALPDLT---ELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CSS-CCCEEC-SCHHHHCTTCC---EEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGG
T ss_pred CCC-cccccC-cchhhcCCCCC---EEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCC
Confidence 988 455321 01123333332 23333333321111 113467889999999998864
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=93.72 E-value=0.0079 Score=54.67 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=30.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++. ++.. .......+++|++|+|+++. ++... +.......++|++|+|+++
T Consensus 126 ~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 126 RNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNS-FQENF----LPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp TTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCE-EGGGE----ECSCCTTCTTCCEEECTTS
T ss_pred cCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCc-ccccc----chhHHhhCcCCCEEECCCC
Confidence 577777777763 3211 01123345677777777652 33311 1111234566777777665
No 61
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=93.68 E-value=0.015 Score=49.95 Aligned_cols=108 Identities=14% Similarity=0.003 Sum_probs=55.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ +|++-. ..+...+++|++|+|+++ +++... .......++|++|+|++. .++...- .
T Consensus 52 ~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~----~ 118 (208)
T 2o6s_A 52 TSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLP-----NGVFDKLTQLKELALNTN-QLQSLPD----G 118 (208)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCSS-CCCCCCT----T
T ss_pred ccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccC-----HhHhcCccCCCEEEcCCC-cCcccCH----h
Confidence 57888888876 444210 112345778888888876 344221 011135678888888876 3442110 1
Q ss_pred hcccCcchhhhhccCCcccccCCcc-ccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHY-PVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~-~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.....++.+.+....+.. +. ..+..+..|+.+||...|.
T Consensus 119 ~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQNQLKS---VPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSCCB
T ss_pred HhccCCcCCEEECCCCccce---eCHHHhccCCCccEEEecCCCe
Confidence 11122222223333322221 11 1245678889999988764
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=93.64 E-value=0.049 Score=52.76 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=63.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++. +++.. . ...+++|++|+|+++. ++... . ...+++|++|+|+++ .+++.. .
T Consensus 243 ~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~------~-~~~l~~L~~L~L~~n-~l~~~~--~--- 304 (466)
T 1o6v_A 243 TNLTDLDLANNQ-ISNLA--P-LSGLTKLTELKLGANQ-ISNIS------P-LAGLTALTNLELNEN-QLEDIS--P--- 304 (466)
T ss_dssp TTCSEEECCSSC-CCCCG--G-GTTCTTCSEEECCSSC-CCCCG------G-GTTCTTCSEEECCSS-CCSCCG--G---
T ss_pred CCCCEEECCCCc-cccch--h-hhcCCCCCEEECCCCc-cCccc------c-ccCCCccCeEEcCCC-cccCch--h---
Confidence 689999999984 44321 1 5678999999999874 55433 1 246789999999987 454421 1
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
+.....++.+.+....+.+ +.. +..+..|+.+|+..++
T Consensus 305 -~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISD---ISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSC---CGG-GGGCTTCCEEECCSSC
T ss_pred -hcCCCCCCEEECcCCcCCC---chh-hccCccCCEeECCCCc
Confidence 2222223333444433322 222 4678899999999885
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=93.55 E-value=0.023 Score=51.08 Aligned_cols=108 Identities=11% Similarity=0.003 Sum_probs=57.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .|++..- .....+++|++|+|+++..++... ... ....++|++|+|+++ .++... ..
T Consensus 56 ~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~----~~~-~~~l~~L~~L~l~~n-~l~~~~----~~ 123 (285)
T 1ozn_A 56 RNLTILWLHSN-VLARIDA-AAFTGLALLEQLDLSDNAQLRSVD----PAT-FHGLGRLHTLHLDRC-GLQELG----PG 123 (285)
T ss_dssp TTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSCTTCCCCC----TTT-TTTCTTCCEEECTTS-CCCCCC----TT
T ss_pred CCCCEEECCCC-ccceeCH-hhcCCccCCCEEeCCCCCCccccC----HHH-hcCCcCCCEEECCCC-cCCEEC----Hh
Confidence 57888888876 4543211 123457888888888875344332 111 135678888888877 344311 11
Q ss_pred hcccCcchhhhhccCCcccccCCcc-ccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHY-PVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~-~l~~~c~~Lr~lDL~~Cp 216 (326)
.+.....++.+.+....+.. +. ..+..+..|+.|||..+.
T Consensus 124 ~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNALQA---LPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSC
T ss_pred HhhCCcCCCEEECCCCcccc---cCHhHhccCCCccEEECCCCc
Confidence 12222222233333322221 11 124567888999988774
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=93.24 E-value=0.02 Score=51.50 Aligned_cols=110 Identities=9% Similarity=0.005 Sum_probs=64.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++..+++..- .....+++|++|+|+++. ++... .....++++|++|+|+++ .++.... .
T Consensus 80 ~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~----~ 147 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCG-LQELG-----PGLFRGLAALQYLYLQDN-ALQALPD----D 147 (285)
T ss_dssp TTCCEEECCSCTTCCCCCT-TTTTTCTTCCEEECTTSC-CCCCC-----TTTTTTCTTCCEEECCSS-CCCCCCT----T
T ss_pred cCCCEEeCCCCCCccccCH-HHhcCCcCCCEEECCCCc-CCEEC-----HhHhhCCcCCCEEECCCC-cccccCH----h
Confidence 6899999999865554211 123467999999999974 44322 111246789999999987 3443111 1
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.....++.+.+....+..-. ...+..+..|+.|||..+..
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCC
T ss_pred HhccCCCccEEECCCCcccccC--HHHhcCccccCEEECCCCcc
Confidence 1222222233344333222111 01246788999999998753
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=93.23 E-value=0.23 Score=48.47 Aligned_cols=109 Identities=7% Similarity=-0.050 Sum_probs=60.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHH--HhcCCCCCeeeccCccccchHH-HHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKL--SENDHTLEILHISGVYNITKEH-LRT 170 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L--~~~C~~Lk~L~LsgC~~lTd~~-l~~ 170 (326)
++|+.|+|+++. ++.-. ..+...+++|++|+|+++ +++... .... ....++|++|+|+++ .+++.. ...
T Consensus 310 ~~L~~L~l~~n~-l~~ip-~~~~~~l~~L~~L~Ls~N-~l~~~~----~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 381 (549)
T 2z81_A 310 EKVKRITVENSK-VFLVP-CSFSQHLKSLEFLDLSEN-LMVEEY----LKNSACKGAWPSLQTLVLSQN-HLRSMQKTGE 381 (549)
T ss_dssp TTCCEEEEESSC-CCCCC-HHHHHHCTTCCEEECCSS-CCCHHH----HHHHTCTTSSTTCCEEECTTS-CCCCHHHHHH
T ss_pred ccceEEEeccCc-cccCC-HHHHhcCccccEEEccCC-cccccc----ccchhhhhccccCcEEEccCC-cccccccchh
Confidence 578888888763 44211 123457899999999997 477654 2221 246789999999998 565432 112
Q ss_pred HHHhcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 171 LHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 171 La~~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
....+..+ +.+.+....+. ++-..+.....|+.+||..+.
T Consensus 382 ~~~~l~~L---~~L~Ls~N~l~---~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 382 ILLTLKNL---TSLDISRNTFH---PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp HGGGCTTC---CEEECTTCCCC---CCCSCCCCCTTCCEEECTTSC
T ss_pred hhhcCCCC---CEEECCCCCCc---cCChhhcccccccEEECCCCC
Confidence 22333333 33344333222 121223445566666666654
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=93.11 E-value=0.0069 Score=55.06 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=7.7
Q ss_pred cCCCCCeeeccCc
Q 020465 148 NDHTLEILHISGV 160 (326)
Q Consensus 148 ~C~~Lk~L~LsgC 160 (326)
..++|++|+|+++
T Consensus 148 ~l~~L~~L~l~~n 160 (306)
T 2z66_A 148 GLSSLEVLKMAGN 160 (306)
T ss_dssp TCTTCCEEECTTC
T ss_pred cCcCCCEEECCCC
Confidence 3456666666655
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=93.05 E-value=0.023 Score=52.22 Aligned_cols=84 Identities=12% Similarity=-0.018 Sum_probs=41.5
Q ss_pred hCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHHhcccCcchhhhhccCCcccccCCc
Q 020465 118 KNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARH 197 (326)
Q Consensus 118 ~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~~l~~~~~l~~l~~~~~~~~~~~gl 197 (326)
..++|++|+|+++ +++... ...+....++|++|+|+++ .+++. ........++.+.+....+. ++
T Consensus 142 ~l~~L~~L~Ls~N-~l~~~~----~~~~~~~l~~L~~L~L~~N-~l~~~------~~~~~l~~L~~L~Ls~N~l~---~l 206 (317)
T 3o53_A 142 CRSRVQYLDLKLN-EIDTVN----FAELAASSDTLEHLNLQYN-FIYDV------KGQVVFAKLKTLDLSSNKLA---FM 206 (317)
T ss_dssp GGSSEEEEECTTS-CCCEEE----GGGGGGGTTTCCEEECTTS-CCCEE------ECCCCCTTCCEEECCSSCCC---EE
T ss_pred ccCCCCEEECCCC-CCCccc----HHHHhhccCcCCEEECCCC-cCccc------ccccccccCCEEECCCCcCC---cc
Confidence 4567777777765 355433 2334445677777777776 34332 00001111222233222221 11
Q ss_pred cccccCCCCceeeecCCCC
Q 020465 198 YPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 198 ~~l~~~c~~Lr~lDL~~Cp 216 (326)
...+.....|+.+||+.+.
T Consensus 207 ~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp CGGGGGGTTCSEEECTTSC
T ss_pred hhhhcccCcccEEECcCCc
Confidence 1224566778888888764
No 68
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=92.99 E-value=0.023 Score=53.55 Aligned_cols=14 Identities=0% Similarity=-0.007 Sum_probs=7.3
Q ss_pred CCCCceeeecCCCC
Q 020465 203 NRENDHSIDVEICP 216 (326)
Q Consensus 203 ~c~~Lr~lDL~~Cp 216 (326)
..+.|+.|||.+.|
T Consensus 337 ~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 337 THHTLKNLTLSHND 350 (390)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hhccCCEEEcCCCC
Confidence 34455555555554
No 69
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=92.96 E-value=0.023 Score=48.69 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=63.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHH
Q 020465 93 NGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLH 172 (326)
Q Consensus 93 ~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La 172 (326)
.++|+.|+|+++ +|++.. ..+...+++|++|+|++. +++.-. .......++|++|+|++. +++... .
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-----~~~~~~l~~L~~L~Ls~n-~l~~~~----~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGGN-KLQSLP-----NGVFNKLTSLTYLNLSTN-QLQSLP----N 93 (208)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCSS-CCCCCC----T
T ss_pred CCCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCCC-ccCccC-----hhhcCCCCCcCEEECCCC-cCCccC----H
Confidence 358999999998 455311 123357899999999986 455322 111246789999999987 454311 1
Q ss_pred HhcccCcchhhhhccCCcccccCCccc-cccCCCCceeeecCCCC
Q 020465 173 SHLKLNSSRQNEQKRQPILYHKARHYP-VLVNRENDHSIDVEICP 216 (326)
Q Consensus 173 ~~l~~~~~l~~l~~~~~~~~~~~gl~~-l~~~c~~Lr~lDL~~Cp 216 (326)
..+.....++.+.+....+. ++.. .+..+..|+.|||..+.
T Consensus 94 ~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQLQ---SLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCccCCCEEEcCCCcCc---ccCHhHhccCCcCCEEECCCCc
Confidence 11222222223333333222 1111 24678899999999874
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=92.94 E-value=0.0088 Score=58.78 Aligned_cols=11 Identities=27% Similarity=0.060 Sum_probs=7.6
Q ss_pred CCccEEecCCC
Q 020465 94 GRLTTLALINC 104 (326)
Q Consensus 94 ~~L~~L~Ls~C 104 (326)
++|+.|+|+++
T Consensus 373 ~~L~~L~l~~n 383 (570)
T 2z63_A 373 TSLKYLDLSFN 383 (570)
T ss_dssp SCCCEEECCSC
T ss_pred CccCEEECCCC
Confidence 56777777766
No 71
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=92.92 E-value=0.032 Score=53.26 Aligned_cols=36 Identities=14% Similarity=-0.010 Sum_probs=18.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
++|+.|+|+++ .|++..-..+...+++|++|+|+++
T Consensus 129 ~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 129 TSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred ccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence 45666666665 2332211122345566666666654
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=92.91 E-value=0.022 Score=55.56 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=41.6
Q ss_pred CCccEEecCCCCCCCH-HHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccch
Q 020465 94 GRLTTLALINCVRITN-AGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITK 165 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD-~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd 165 (326)
++|+.|+|+++ .|++ ..+......+++|+.|+|+++. ++... -.......++|++|+|+++ .+++
T Consensus 348 ~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l----~~~~~~~l~~L~~L~Ls~N-~l~~ 413 (520)
T 2z7x_B 348 TELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDE----KKGDCSWTKSLLSLNMSSN-ILTD 413 (520)
T ss_dssp SSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCG----GGCSCCCCTTCCEEECCSS-CCCG
T ss_pred CCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCccc----ccchhccCccCCEEECcCC-CCCc
Confidence 58999999887 5664 2344556678899999998874 54311 0001134577888888877 4543
No 73
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=92.82 E-value=0.013 Score=58.41 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++. ++... ......+++|++|+|+++. +++.. +.....++++|++|+|+++
T Consensus 424 ~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~----~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 424 EKLLYLDISYTN-TKIDF-DGIFLGLTSLNTLKMAGNS-FKDNT----LSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp TTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCE-EGGGE----ECSCCTTCTTCCEEECTTS
T ss_pred ccCCEEECcCCC-CCccc-hhhhcCCCCCCEEECCCCc-CCCcc----hHHhhccCCCCCEEECCCC
Confidence 467777777763 32210 0122345666666666652 33321 1111134556666666665
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=92.72 E-value=0.013 Score=57.59 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=30.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++. +++.........+++|++|+|+++. ++... .....++++|++|+|+++
T Consensus 396 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 396 EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-----NGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp TTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECC-----TTTTTTCTTCCEEECTTC
T ss_pred CCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccc-----hhhhhcCCcCcEEECcCC
Confidence 467777777763 3221111123456677777777663 32211 001134566666666665
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=92.37 E-value=0.036 Score=49.65 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=9.4
Q ss_pred cCCCCceeeecCCCCC
Q 020465 202 VNRENDHSIDVEICPS 217 (326)
Q Consensus 202 ~~c~~Lr~lDL~~Cp~ 217 (326)
..+..|+.+||...|.
T Consensus 202 ~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTCTTCCEEECCSSCB
T ss_pred ccccCCCEEEecCCCe
Confidence 4455666666666653
No 76
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=92.34 E-value=0.031 Score=46.65 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=60.6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHH
Q 020465 93 NGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLH 172 (326)
Q Consensus 93 ~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La 172 (326)
..+|+.|+|++. .++.-. ..+....++|++|+|++. +++.-. .......++|++|+|++. .++... .
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-----~~~~~~l~~L~~L~l~~N-~l~~~~----~ 93 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSQN-QIQSLP-----DGVFDKLTKLTILYLHEN-KLQSLP----N 93 (177)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCSS-CCCCCC----T
T ss_pred CCCCcEEEeCCC-cccEeC-HHHhcCcccccEEECCCC-cceEeC-----hhHccCCCccCEEECCCC-CccccC----H
Confidence 358999999886 344210 112356789999999886 354221 111246788999999887 444311 1
Q ss_pred HhcccCcchhhhhccCCcccccCCccc-cccCCCCceeeecCCCCC
Q 020465 173 SHLKLNSSRQNEQKRQPILYHKARHYP-VLVNRENDHSIDVEICPS 217 (326)
Q Consensus 173 ~~l~~~~~l~~l~~~~~~~~~~~gl~~-l~~~c~~Lr~lDL~~Cp~ 217 (326)
..+.....++.+.+....+. ++.. .+.....|+.+||...|.
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQLK---SVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHhhCCcccCEEECcCCcce---EeCHHHhcCCcccCEEEecCCCe
Confidence 11122222222333332222 1211 246678899999999885
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.33 E-value=0.032 Score=54.97 Aligned_cols=16 Identities=13% Similarity=-0.130 Sum_probs=10.5
Q ss_pred cCCCCceeeecCCCCC
Q 020465 202 VNRENDHSIDVEICPS 217 (326)
Q Consensus 202 ~~c~~Lr~lDL~~Cp~ 217 (326)
...+.|+.+||.++|.
T Consensus 234 ~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCCTTCCEEECTTCCB
T ss_pred ccCCCCCEEEcCCCCC
Confidence 4456677777777664
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=92.27 E-value=0.025 Score=56.23 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=17.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
++|+.|+|+++. ++.... .....+|+|++|+|+++
T Consensus 425 ~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 425 HLLKVLNLSHSL-LDISSE-QLFDGLPALQHLNLQGN 459 (606)
T ss_dssp TTCCEEECTTCC-CBTTCT-TTTTTCTTCCEEECTTC
T ss_pred ccCCEEECCCCc-cCCcCH-HHHhCCCCCCEEECCCC
Confidence 466677776663 322111 11234556666666655
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=92.27 E-value=0.031 Score=49.48 Aligned_cols=16 Identities=6% Similarity=-0.278 Sum_probs=10.3
Q ss_pred cCCCCceeeecCCCCC
Q 020465 202 VNRENDHSIDVEICPS 217 (326)
Q Consensus 202 ~~c~~Lr~lDL~~Cp~ 217 (326)
.....|+.+||...|.
T Consensus 176 ~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 176 DRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTCTTCCEEECCSCCB
T ss_pred hCCCCCCEEEeeCCce
Confidence 4556677777776664
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=92.22 E-value=0.11 Score=55.36 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=18.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSP 135 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd 135 (326)
++|+.|+|+++..... +-....++++|+.|+|+++..++.
T Consensus 491 ~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp TTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCH
T ss_pred CCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCccc
Confidence 4566666666532211 001223455666666665533443
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=92.12 E-value=0.031 Score=49.97 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=60.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .|++..- .....+++|++|+|+++. ++... ...+ ..+++|++|+++++ .++...- .
T Consensus 52 ~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~----~~~~-~~l~~L~~L~l~~n-~l~~~~~----~ 118 (276)
T 2z62_A 52 PELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNP-IQSLA----LGAF-SGLSSLQKLVAVET-NLASLEN----F 118 (276)
T ss_dssp TTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCC-CCEEC----TTTT-TTCTTCCEEECTTS-CCCCSTT----C
T ss_pred cCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCCc-cCccC----hhhh-cCCccccEEECCCC-CccccCc----h
Confidence 57888888887 4543111 123457888899988863 44322 1111 35688999988877 3332110 0
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.....++.+.+....+.. .++...+.++..|+.+||..+..
T Consensus 119 ~~~~l~~L~~L~l~~n~l~~-~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 119 PIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred hcccCCCCCEEECcCCccce-ecCchhhccCCCCCEEECCCCCC
Confidence 12222222333333332221 11223456788999999998853
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=91.89 E-value=0.14 Score=45.88 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=64.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .+++- .....+++|++|+|+++ +++... .....++++|++|+|+++ +++... ..
T Consensus 63 ~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~n-~l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~----~~ 127 (272)
T 3rfs_A 63 PNVRYLALGGN-KLHDI---SALKELTNLTYLILTGN-QLQSLP-----NGVFDKLTNLKELVLVEN-QLQSLP----DG 127 (272)
T ss_dssp TTCCEEECTTS-CCCCC---GGGTTCTTCCEEECTTS-CCCCCC-----TTTTTTCTTCCEEECTTS-CCCCCC----TT
T ss_pred CCCcEEECCCC-CCCCc---hhhcCCCCCCEEECCCC-ccCccC-----hhHhcCCcCCCEEECCCC-cCCccC----HH
Confidence 68999999998 46542 23457899999999997 355322 111246789999999988 454311 11
Q ss_pred hcccCcchhhhhccCCcccccCCcc-ccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHY-PVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~-~l~~~c~~Lr~lDL~~Cp 216 (326)
.+.....++.+.+....+. ++. ..+..+..|+.|||..+.
T Consensus 128 ~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHNQLQ---SLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp TTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSC
T ss_pred HhccCCCCCEEECCCCccC---ccCHHHhccCccCCEEECCCCC
Confidence 1222222333344443322 121 124678899999999885
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=91.86 E-value=0.04 Score=48.76 Aligned_cols=108 Identities=11% Similarity=0.046 Sum_probs=56.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .|++.. .......++|++|+|++. +++... . ....+.++|++|+|++. .++...- .
T Consensus 59 ~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~----~-~~~~~l~~L~~L~L~~N-~l~~~~~----~ 125 (251)
T 3m19_A 59 TKLTWLNLDYN-QLQTLS-AGVFDDLTELGTLGLANN-QLASLP----L-GVFDHLTQLDKLYLGGN-QLKSLPS----G 125 (251)
T ss_dssp TTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC----T-TTTTTCTTCCEEECCSS-CCCCCCT----T
T ss_pred ccCCEEECCCC-cCCccC-HhHhccCCcCCEEECCCC-cccccC----h-hHhcccCCCCEEEcCCC-cCCCcCh----h
Confidence 57888888876 444311 112345678888888876 344221 0 11135678888888876 4442110 1
Q ss_pred hcccCcchhhhhccCCcccccCCccc-cccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYP-VLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~-l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.....++.+.+....+. ++.. .+.....|+.|||..+..
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQ---SIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp TTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCC
T ss_pred HhccCCcccEEECcCCcCC---ccCHHHcCcCcCCCEEECCCCcC
Confidence 1112222222333332222 1211 245678889999987753
No 84
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=91.85 E-value=0.023 Score=59.03 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=19.2
Q ss_pred CCccEEecCCCCCCCHHHHH-HHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQ-RVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~-~v~~~cp~L~~L~Ls~C 130 (326)
.+|++|+|+++. ++..--. ....++++|++|+|+++
T Consensus 100 ~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n 136 (768)
T 3rgz_A 100 ASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSN 136 (768)
T ss_dssp TTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSS
T ss_pred CCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCC
Confidence 577888887763 3311000 02335666666666665
No 85
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=91.71 E-value=0.083 Score=51.99 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=58.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ +|+.-. ..+..++++|++|+|+++ +++.-. -. .-.++++|++|+|+++ +++.-. ..
T Consensus 76 ~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~----~~-~f~~L~~L~~L~Ls~N-~l~~l~----~~ 142 (635)
T 4g8a_A 76 PELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGN-PIQSLA----LG-AFSGLSSLQKLVAVET-NLASLE----NF 142 (635)
T ss_dssp TTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTC-CCCEEC----GG-GGTTCTTCCEEECTTS-CCCCST----TC
T ss_pred CCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCC-cCCCCC----HH-HhcCCCCCCEEECCCC-cCCCCC----hh
Confidence 57899999888 344200 012346788999999887 354321 01 1246788999998887 344310 01
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
.++....++.+.+....+.. ..+-..+.....|+.+||..+.
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSSC
T ss_pred hhhcCcccCeeccccCcccc-CCCchhhccchhhhhhcccCcc
Confidence 12222222233333322211 1111234567888888888775
No 86
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=91.60 E-value=0.047 Score=52.62 Aligned_cols=16 Identities=0% Similarity=-0.116 Sum_probs=10.7
Q ss_pred ccCCCCceeeecCCCC
Q 020465 201 LVNRENDHSIDVEICP 216 (326)
Q Consensus 201 ~~~c~~Lr~lDL~~Cp 216 (326)
+.+++.|+.|||..+.
T Consensus 262 ~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 262 FDGLASLVELNLAHNN 277 (452)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCc
Confidence 3456777777777664
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=91.60 E-value=0.042 Score=49.15 Aligned_cols=108 Identities=9% Similarity=0.023 Sum_probs=50.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .|+.-.. .+...+++|++|+|+++. ++... -. .....++|++|+|+++ .++.... .
T Consensus 85 ~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~----~~-~~~~l~~L~~L~Ls~n-~l~~~~~----~ 151 (270)
T 2o6q_A 85 KNLETLWVTDN-KLQALPI-GVFDQLVNLAELRLDRNQ-LKSLP----PR-VFDSLTKLTYLSLGYN-ELQSLPK----G 151 (270)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTCSSCCEEECCSSC-CCCCC----TT-TTTTCTTCCEEECCSS-CCCCCCT----T
T ss_pred CCCCEEECCCC-cCCcCCH-hHcccccCCCEEECCCCc-cCeeC----HH-HhCcCcCCCEEECCCC-cCCccCH----h
Confidence 46777777665 2332110 122346677777777652 33221 00 1135677777777776 3432111 0
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
.+.....++.+.+....+..-. ...+..+..|+.|||..+.
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVP--EGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSC
T ss_pred HccCCcccceeEecCCcCcEeC--hhHhccCCCcCEEECCCCc
Confidence 1112222222233322221110 0124567888888888774
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=91.58 E-value=0.1 Score=45.67 Aligned_cols=107 Identities=12% Similarity=-0.059 Sum_probs=50.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|++.. |+.-. ..+....++|+.|+|++. +++.-. .......++|++|+|++. +++. +..
T Consensus 64 ~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~-----~~~~~~l~~L~~L~Ls~N-~l~~-----lp~ 129 (229)
T 3e6j_A 64 INLKELYLGSNQ-LGALP-VGVFDSLTQLTVLDLGTN-QLTVLP-----SAVFDRLVHLKELFMCCN-KLTE-----LPR 129 (229)
T ss_dssp TTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCSS-CCCS-----CCT
T ss_pred cCCcEEECCCCC-CCCcC-hhhcccCCCcCEEECCCC-cCCccC-----hhHhCcchhhCeEeccCC-cccc-----cCc
Confidence 467777776653 32110 012245667777777765 344211 011134567777777765 3432 111
Q ss_pred hcccCcchhhhhccCCcccccCCcc-ccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHY-PVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~-~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.....++.+.+....+.. +. ..+.....|+.++|..-|.
T Consensus 130 ~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 130 GIERLTHLTHLALDQNQLKS---IPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TGGGCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECTTSCB
T ss_pred ccccCCCCCEEECCCCcCCc---cCHHHHhCCCCCCEEEeeCCCc
Confidence 11222222222332222211 11 1245677888888887774
No 89
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=91.41 E-value=0.021 Score=56.82 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=18.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
++|+.|+|+++. +++.. ......+++|++|+|+++
T Consensus 376 ~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 376 SHLQSLNLSYNE-PLSLK-TEAFKECPQLELLDLAFT 410 (606)
T ss_dssp TTCCEEECCSCS-CEEEC-TTTTTTCTTCSEEECTTC
T ss_pred CCCCEEECCCCc-CCcCC-HHHhcCCccCCeEECCCC
Confidence 577777777763 22210 011234566666666665
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.40 E-value=0.05 Score=53.59 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=20.7
Q ss_pred hCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 118 KNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 118 ~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
.+++|+.|+|++. .++... ...+....++|++|+|+++
T Consensus 142 ~l~~L~~L~Ls~N-~l~~~~----~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 142 CRSRVQYLDLKLN-EIDTVN----FAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp GGSSEEEEECTTS-CCCEEE----GGGGGGGTTTCCEEECTTS
T ss_pred CCCCCCEEECCCC-CCCCcC----hHHHhhhCCcccEEecCCC
Confidence 3566666666664 344332 2233335566677766665
No 91
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=91.26 E-value=0.06 Score=47.00 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=50.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|++. .|+.-. .....+.++|++|+|++.. ++... - ....+.++|++|+|++. .++... ..
T Consensus 57 ~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~----~-~~~~~l~~L~~L~Ls~N-~l~~~~----~~ 123 (220)
T 2v70_A 57 PQLRKINFSNN-KITDIE-EGAFEGASGVNEILLTSNR-LENVQ----H-KMFKGLESLKTLMLRSN-RITCVG----ND 123 (220)
T ss_dssp TTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCCCC----G-GGGTTCSSCCEEECTTS-CCCCBC----TT
T ss_pred CCCCEEECCCC-cCCEEC-HHHhCCCCCCCEEECCCCc-cCccC----H-hHhcCCcCCCEEECCCC-cCCeEC----Hh
Confidence 46777777775 344211 0123356777777777752 33221 0 01135677777777766 333210 01
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.....++.+.+....+.+-. ...+.....|+.|||...|.
T Consensus 124 ~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 124 SFIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSTTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCSCCE
T ss_pred HcCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecCcCC
Confidence 1111112222222222221110 11235567778888877764
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.21 E-value=0.042 Score=55.18 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=15.0
Q ss_pred CccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 95 RLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 95 ~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
+|+.|+|+++ .+++. .....+|+|+.|+|+++
T Consensus 233 ~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 233 ELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp CCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS
T ss_pred CCCEEECCCC-CCCCC---hhhccCCCCCEEECCCC
Confidence 3444555444 33331 22334555666666554
No 93
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=91.08 E-value=0.059 Score=52.00 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=11.4
Q ss_pred ccCCCCceeeecCCCCC
Q 020465 201 LVNRENDHSIDVEICPS 217 (326)
Q Consensus 201 ~~~c~~Lr~lDL~~Cp~ 217 (326)
+..++.|+.+||...|.
T Consensus 316 ~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 316 FHSVGNLETLILDSNPL 332 (477)
T ss_dssp BSCGGGCCEEECCSSCE
T ss_pred cCCCcccCEEEccCCCc
Confidence 34566777777777764
No 94
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=90.90 E-value=0.058 Score=51.81 Aligned_cols=15 Identities=13% Similarity=-0.028 Sum_probs=9.9
Q ss_pred cCCCCceeeecCCCC
Q 020465 202 VNRENDHSIDVEICP 216 (326)
Q Consensus 202 ~~c~~Lr~lDL~~Cp 216 (326)
.+++.|+.|||..+.
T Consensus 252 ~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 252 DNLQSLVEINLAHNN 266 (440)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred cCCCCCCEEECCCCC
Confidence 456677777777654
No 95
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=90.81 E-value=0.17 Score=43.27 Aligned_cols=108 Identities=10% Similarity=-0.039 Sum_probs=59.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHH
Q 020465 93 NGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLH 172 (326)
Q Consensus 93 ~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La 172 (326)
+.+|+.|+|++. +|+. +-......++|+.|+|++.. |+.-. -.+ -.+.++|++|+|++. .++...-
T Consensus 30 ~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~----~~~-f~~l~~L~~L~Ls~N-~l~~i~~---- 95 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR-ISTLS----NQS-FSNMTQLLTLILSYN-RLRCIPP---- 95 (193)
T ss_dssp CTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC-CCCCC----TTT-TTTCTTCCEEECCSS-CCCBCCT----
T ss_pred CCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc-CCEeC----HhH-ccCCCCCCEEECCCC-ccCEeCH----
Confidence 357899999886 4542 21344577889999998863 44321 011 135688999999876 3443111
Q ss_pred HhcccCcchhhhhccCCcccccCCcc-ccccCCCCceeeecCCCCC
Q 020465 173 SHLKLNSSRQNEQKRQPILYHKARHY-PVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 173 ~~l~~~~~l~~l~~~~~~~~~~~gl~-~l~~~c~~Lr~lDL~~Cp~ 217 (326)
..+.....++.+.+....+.. +. ..+.....|+.+||+.-|.
T Consensus 96 ~~f~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHGNDISV---VPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCB---CCTTTTTTCTTCCEEECCSSCE
T ss_pred HHhCCCCCCCEEECCCCCCCe---eChhhhhcCccccEEEeCCCCe
Confidence 111222222222333222211 11 1245678889999988775
No 96
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=90.74 E-value=0.13 Score=52.18 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHH--hcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLS--ENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~--~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++..... +-....+.++|+.|+|+++..++...+-..+..+. ..+++|++|+|+++
T Consensus 249 ~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTK--LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTCCEEEEECCTTCSS--CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CCCCEEEecCCcCCcc--ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 4677777777642210 00122345667777777664355411111122221 23456666666655
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=90.70 E-value=0.11 Score=51.21 Aligned_cols=109 Identities=15% Similarity=0.027 Sum_probs=63.7
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHH
Q 020465 92 ANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTL 171 (326)
Q Consensus 92 ~~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~L 171 (326)
-+.+++.|+|++- +|+.-. .....++++|++|+|+++ +|+.-. -. .-.++++|++|+|++. .++.-.-
T Consensus 50 lp~~~~~LdLs~N-~i~~l~-~~~f~~l~~L~~L~Ls~N-~i~~i~----~~-~f~~L~~L~~L~Ls~N-~l~~l~~--- 117 (635)
T 4g8a_A 50 LPFSTKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRC-EIQTIE----DG-AYQSLSHLSTLILTGN-PIQSLAL--- 117 (635)
T ss_dssp SCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTC-CCCEEC----TT-TTTTCTTCCEEECTTC-CCCEECG---
T ss_pred CCcCCCEEEeeCC-CCCCCC-HHHHhCCCCCCEEECCCC-cCCCcC----hh-HhcCCCCCCEEEccCC-cCCCCCH---
Confidence 3568999999986 565311 012346899999999998 354211 00 1146789999999997 3443111
Q ss_pred HHhcccCcchhhhhccCCcccccCCccc-cccCCCCceeeecCCCC
Q 020465 172 HSHLKLNSSRQNEQKRQPILYHKARHYP-VLVNRENDHSIDVEICP 216 (326)
Q Consensus 172 a~~l~~~~~l~~l~~~~~~~~~~~gl~~-l~~~c~~Lr~lDL~~Cp 216 (326)
..+.....++.+.+....+.. +.. .+.++..|+.|||..+.
T Consensus 118 -~~f~~L~~L~~L~Ls~N~l~~---l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 118 -GAFSGLSSLQKLVAVETNLAS---LENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp -GGGTTCTTCCEEECTTSCCCC---STTCCCTTCTTCCEEECCSSC
T ss_pred -HHhcCCCCCCEEECCCCcCCC---CChhhhhcCcccCeeccccCc
Confidence 112222223333433332221 211 24678999999999874
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=90.64 E-value=0.041 Score=57.76 Aligned_cols=112 Identities=11% Similarity=0.012 Sum_probs=66.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
.+|+.|+|+++..++.-. .....++++|+.|+|+++. ++... -.. -.++++|++|+|+++ ++++..... .
T Consensus 48 ~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~-l~~~~----p~~-~~~l~~L~~L~Ls~n-~l~~~~~~~--~ 117 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSK-IYFLH----PDA-FQGLFHLFELRLYFC-GLSDAVLKD--G 117 (844)
T ss_dssp CSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCC-CCEEC----TTS-SCSCSSCCCEECTTC-CCSSCCSTT--C
T ss_pred ccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCc-CcccC----HhH-ccCCcccCEeeCcCC-CCCcccccC--c
Confidence 689999999985443210 0123578999999999874 55331 111 146789999999998 455422111 1
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
.+.....++.+.+....+.+ ......+.++..|+.|||..+.
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCC-CCCCGGGGTCSSCCEEEEESSC
T ss_pred cccccCCCCEEECCCCcccc-cccchhHhhCCCCCEEECCCCc
Confidence 12333333344444433322 1121345789999999999875
No 99
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=90.60 E-value=0.19 Score=53.75 Aligned_cols=107 Identities=12% Similarity=0.071 Sum_probs=67.6
Q ss_pred CCccEEecCCCCCCCH----HHHHHHH---HhCCCccEEEeCCCCCCCHHHHHHHHHH--HHhcCCCCCeeeccCccccc
Q 020465 94 GRLTTLALINCVRITN----AGLQRVI---EKNPFIKKLYIPGCTGLSPQGVIEAVEK--LSENDHTLEILHISGVYNIT 164 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD----~gL~~v~---~~cp~L~~L~Ls~C~~ITd~gi~~~L~~--L~~~C~~Lk~L~LsgC~~lT 164 (326)
++|+.|+|+++..++. .++..+. ...|+|+.|+|+++. ++ . +.. ...+.++|++|+|++. .++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~----ip~~~~l~~L~~L~~L~Ls~N-~l~ 586 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--E----FPASASLQKMVKLGLLDCVHN-KVR 586 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--B----CCCHHHHTTCTTCCEEECTTS-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--c----cCChhhhhcCCCCCEEECCCC-Ccc
Confidence 6899999999865876 3343333 456799999999974 55 2 211 2246789999999987 455
Q ss_pred hHHHHHHHHhcccCcchhhhhccCCcccccCCccccccCCCC-ceeeecCCCCC
Q 020465 165 KEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNREN-DHSIDVEICPS 217 (326)
Q Consensus 165 d~~l~~La~~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~-Lr~lDL~~Cp~ 217 (326)
. +. .++....++.+.+....+. .+-..+..... |+.|||..+..
T Consensus 587 ~--lp----~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 587 H--LE----AFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp B--CC----CCCTTSEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSCC
T ss_pred c--ch----hhcCCCcceEEECcCCccc---cchHHHhhccccCCEEECcCCCC
Confidence 2 22 3344444444444443332 12222355666 99999998863
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=90.57 E-value=0.074 Score=46.43 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=7.3
Q ss_pred CCCCceeeecCCCC
Q 020465 203 NRENDHSIDVEICP 216 (326)
Q Consensus 203 ~c~~Lr~lDL~~Cp 216 (326)
....|+.+||..-|
T Consensus 150 ~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 150 PLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCCCCEEEeCCCC
Confidence 34555555555544
No 101
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=90.55 E-value=0.047 Score=52.72 Aligned_cols=16 Identities=6% Similarity=-0.087 Sum_probs=10.7
Q ss_pred ccCCCCceeeecCCCC
Q 020465 201 LVNRENDHSIDVEICP 216 (326)
Q Consensus 201 ~~~c~~Lr~lDL~~Cp 216 (326)
+.++..|+.|+|..+.
T Consensus 172 l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLN 187 (477)
T ss_dssp HTTCTTCCEEEEESCC
T ss_pred hcccCCCcEEeCCCCc
Confidence 3566777777777654
No 102
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=90.54 E-value=0.069 Score=45.52 Aligned_cols=110 Identities=11% Similarity=0.012 Sum_probs=59.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
.+|+.|+|++. +|+...-..+....++|++|+|++. +++... -. ...+.++|++|+|++. .++...- .
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~----~~-~~~~l~~L~~L~Ls~N-~l~~~~~----~ 96 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIE----PN-AFEGASHIQELQLGEN-KIKEISN----K 96 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBC----TT-TTTTCTTCCEEECCSC-CCCEECS----S
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcC----Hh-HcCCcccCCEEECCCC-cCCccCH----H
Confidence 47899999887 4543211123457889999999886 354321 01 1135688999999887 3443111 1
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.....++.+.+....+.+.. ...+.....|+.+||...|.
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCB
T ss_pred HhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCc
Confidence 1112222222233222221110 11235677888899888775
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=89.97 E-value=0.073 Score=46.69 Aligned_cols=108 Identities=12% Similarity=0.017 Sum_probs=62.9
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHH
Q 020465 93 NGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLH 172 (326)
Q Consensus 93 ~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La 172 (326)
+++|+.|+|+++ .|+... .......++|++|+|++.. ++.-. .....+.++|++|+|++. .++... .
T Consensus 39 ~~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~i~-----~~~~~~l~~L~~L~Ls~N-~l~~l~----~ 105 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKLE-PGVFDSLINLKELYLGSNQ-LGALP-----VGVFDSLTQLTVLDLGTN-QLTVLP----S 105 (229)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-----TTTTTTCTTCCEEECCSS-CCCCCC----T
T ss_pred CCCCCEEEcCCC-ccCccC-HHHhhCccCCcEEECCCCC-CCCcC-----hhhcccCCCcCEEECCCC-cCCccC----h
Confidence 368999999997 454311 1223568999999999974 54321 011246789999999987 455311 1
Q ss_pred HhcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCC
Q 020465 173 SHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 173 ~~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
..+.....++.+.+....+.. +-..+.....|+.|||....
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTE---LPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCS---CCTTGGGCTTCSEEECCSSC
T ss_pred hHhCcchhhCeEeccCCcccc---cCcccccCCCCCEEECCCCc
Confidence 111222222233333333221 21234678899999999864
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=89.81 E-value=0.04 Score=54.62 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=22.3
Q ss_pred CCccEEecCCCCCCCH-HHHHHHHHhCCCccEEEeCCCC
Q 020465 94 GRLTTLALINCVRITN-AGLQRVIEKNPFIKKLYIPGCT 131 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD-~gL~~v~~~cp~L~~L~Ls~C~ 131 (326)
++|+.|+|+++ .|++ ..+.......++|+.|+|+++.
T Consensus 377 ~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 377 KRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc
Confidence 57777777776 4553 1222334456777777777753
No 105
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=89.77 E-value=0.042 Score=57.65 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=61.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHH-HHhcCCCCCeeeccCccccchHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEK-LSENDHTLEILHISGVYNITKEHLRTLH 172 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~-L~~~C~~Lk~L~LsgC~~lTd~~l~~La 172 (326)
++|+.|+|+++ .|+... .....++++|++|+|+++ ++++.. +.. ...+.++|++|+|+++ .++.... .
T Consensus 73 ~~L~~L~Ls~N-~l~~~~-p~~~~~l~~L~~L~Ls~n-~l~~~~----~~~~~~~~L~~L~~L~Ls~N-~l~~~~~---~ 141 (844)
T 3j0a_A 73 PNLRILDLGSS-KIYFLH-PDAFQGLFHLFELRLYFC-GLSDAV----LKDGYFRNLKALTRLDLSKN-QIRSLYL---H 141 (844)
T ss_dssp TTCCEEECTTC-CCCEEC-TTSSCSCSSCCCEECTTC-CCSSCC----STTCCCSSCSSCCEEEEESC-CCCCCCC---C
T ss_pred CCCCEEECCCC-cCcccC-HhHccCCcccCEeeCcCC-CCCccc----ccCccccccCCCCEEECCCC-ccccccc---c
Confidence 58999999988 344321 112346899999999998 455422 111 1246789999999987 3443211 1
Q ss_pred HhcccCcchhhhhccCCcccccCCccccccCC--CCceeeecCCCCC
Q 020465 173 SHLKLNSSRQNEQKRQPILYHKARHYPVLVNR--ENDHSIDVEICPS 217 (326)
Q Consensus 173 ~~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c--~~Lr~lDL~~Cp~ 217 (326)
..++....++.+.+....+.... ...+... ..|+.++|..+..
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~~--~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLVC--EHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCCC--SGGGHHHHHCSSCCCEECCSBS
T ss_pred hhHhhCCCCCEEECCCCcCCeeC--HHHcccccCCccceEECCCCcc
Confidence 12233333333444433322211 0111222 6788999988764
No 106
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=89.71 E-value=0.083 Score=50.90 Aligned_cols=17 Identities=6% Similarity=-0.041 Sum_probs=14.5
Q ss_pred ccCCCCceeeecCCCCC
Q 020465 201 LVNRENDHSIDVEICPS 217 (326)
Q Consensus 201 ~~~c~~Lr~lDL~~Cp~ 217 (326)
+..++.|+.+||...|.
T Consensus 286 ~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp STTCTTCCEEECCSSCE
T ss_pred hccccCCCEEEccCCCc
Confidence 45688999999999985
No 107
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=89.52 E-value=0.18 Score=46.09 Aligned_cols=12 Identities=0% Similarity=-0.078 Sum_probs=7.6
Q ss_pred CCceeeecCCCC
Q 020465 205 ENDHSIDVEICP 216 (326)
Q Consensus 205 ~~Lr~lDL~~Cp 216 (326)
..|+.+||..+.
T Consensus 192 ~~L~~L~l~~n~ 203 (330)
T 1xku_A 192 PSLTELHLDGNK 203 (330)
T ss_dssp TTCSEEECTTSC
T ss_pred ccCCEEECCCCc
Confidence 566667766654
No 108
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=89.47 E-value=0.6 Score=42.88 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=42.9
Q ss_pred CCCccEEecCCCCCCCH-HHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCcc
Q 020465 93 NGRLTTLALINCVRITN-AGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVY 161 (326)
Q Consensus 93 ~~~L~~L~Ls~C~~ITD-~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~ 161 (326)
-++|+.|+|++- +|++ .++..+...+|+|+.|+|++- +|++-.- +..+. .. +|++|+|++-.
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~---l~~l~-~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE---LDKIK-GL-KLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG---GGGGT-TS-CCSEEECTTST
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchh---hhhcc-cC-CcceEEccCCc
Confidence 368999999987 5654 345566678999999999884 5665421 33332 22 89999998863
No 109
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=89.44 E-value=0.19 Score=48.19 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=14.5
Q ss_pred ccCCCCceeeecCCCCC
Q 020465 201 LVNRENDHSIDVEICPS 217 (326)
Q Consensus 201 ~~~c~~Lr~lDL~~Cp~ 217 (326)
+..++.|+.|||...|.
T Consensus 275 ~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSCTTCCEEECCSSCE
T ss_pred hccccCCCEEEcCCCCc
Confidence 46678999999999985
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=89.39 E-value=0.17 Score=51.15 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
..|+.|+|+++ .|+. +-. ...+++|+.|+|++. +++. +..-..+.++|++|+|++. .++. +.
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~~------lp~~~~~l~~L~~L~Ls~N-~l~~--lp---- 502 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLRA------LPPALAALRCLEVLQASDN-ALEN--VD---- 502 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCCC------CCGGGGGCTTCCEEECCSS-CCCC--CG----
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-cccc------cchhhhcCCCCCEEECCCC-CCCC--Cc----
Confidence 47999999997 5654 323 567889999999987 4552 1111246789999999987 5554 22
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPSC 218 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~c 218 (326)
.++....++.|.+....+.+.. ....+..+..|+.|||...+..
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~-~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSS-TTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCCcEEECCCCCCCCCC-CcHHHhcCCCCCEEEecCCcCC
Confidence 2333333333444433332210 0234567899999999998754
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=89.34 E-value=0.079 Score=46.24 Aligned_cols=111 Identities=10% Similarity=0.021 Sum_probs=63.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHH
Q 020465 93 NGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLH 172 (326)
Q Consensus 93 ~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La 172 (326)
+..++.|+|++. .|+...-..+....++|++|+|++.. ++.-. -. ...+.++|++|+|++. .++...-
T Consensus 31 ~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~----~~-~~~~l~~L~~L~Ls~N-~l~~~~~---- 98 (220)
T 2v70_A 31 PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIE----EG-AFEGASGVNEILLTSN-RLENVQH---- 98 (220)
T ss_dssp CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEEC----TT-TTTTCTTCCEEECCSS-CCCCCCG----
T ss_pred CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEEC----HH-HhCCCCCCCEEECCCC-ccCccCH----
Confidence 457899999997 45542111234678999999999863 55322 01 1146789999999987 3443211
Q ss_pred HhcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 173 SHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 173 ~~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
..+.....++.+.+....+..-. ...+.....|+.|||..+..
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITCVG--NDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCCBC--TTSSTTCTTCSEEECTTSCC
T ss_pred hHhcCCcCCCEEECCCCcCCeEC--HhHcCCCccCCEEECCCCcC
Confidence 11222222223333333222110 12245778999999998743
No 112
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=89.18 E-value=0.18 Score=52.30 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=7.7
Q ss_pred cCCCCCeeeccCc
Q 020465 148 NDHTLEILHISGV 160 (326)
Q Consensus 148 ~C~~Lk~L~LsgC 160 (326)
++++|++|+|+++
T Consensus 221 ~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 221 DCSALQHLDISGN 233 (768)
T ss_dssp TCCSCCEEECCSS
T ss_pred cCCCCCEEECcCC
Confidence 4556666666655
No 113
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=88.97 E-value=0.018 Score=50.49 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=32.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++..|+.-.- .....+++|++|+|++|.+++.-. -. .-.++++|++|+++++
T Consensus 55 ~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~----~~-~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYID----PD-ALKELPLLKFLGIFNT 115 (239)
T ss_dssp TTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEEC----TT-SEECCTTCCEEEEEEE
T ss_pred CCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcC----HH-HhCCCCCCCEEeCCCC
Confidence 4677777777643432110 012356777777777655555322 00 1134567777777765
No 114
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=88.73 E-value=0.14 Score=46.65 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=15.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
++|+.|+|++. .|+ .+-......++|+.|+|++.
T Consensus 77 ~~L~~L~Ls~N-~l~--~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 77 PVLGTLDLSHN-QLQ--SLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TTCCEEECCSS-CCS--SCCCCTTTCTTCCEEECCSS
T ss_pred CcCCEEECCCC-cCC--cCchhhccCCCCCEEECCCC
Confidence 35555555554 232 11112234455555555554
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=88.69 E-value=0.08 Score=55.03 Aligned_cols=105 Identities=23% Similarity=0.158 Sum_probs=59.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
.+|+.|+|+++. |+. +..-+-.+++|++|+|++. .++.-. ..+ .+.++|++|+|++. .++. |-.
T Consensus 224 ~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N-~l~~lp-----~~~-~~l~~L~~L~Ls~N-~l~~-----lp~ 287 (727)
T 4b8c_D 224 QLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGN-SLTELP-----AEI-KNLSNLRVLDLSHN-RLTS-----LPA 287 (727)
T ss_dssp CCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTS-CCSCCC-----GGG-GGGTTCCEEECTTS-CCSS-----CCS
T ss_pred CCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCC-cCcccC-----hhh-hCCCCCCEEeCcCC-cCCc-----cCh
Confidence 578899998874 331 1111226788999999886 355110 111 45688999999987 3542 122
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+..+..++.|.+....+. .+-..+..+..|+.|||+..+.
T Consensus 288 ~~~~l~~L~~L~L~~N~l~---~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVT---TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SGGGGTTCSEEECCSSCCC---CCCSSTTSCTTCCCEECTTSCC
T ss_pred hhcCCCCCCEEECCCCCCC---ccChhhhcCCCccEEeCCCCcc
Confidence 2222222333333333221 1212246788999999999885
No 116
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=88.69 E-value=0.028 Score=51.74 Aligned_cols=110 Identities=13% Similarity=-0.067 Sum_probs=56.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++.++++..- .....+++|++|+|+++. ++... -.. ....++|++|+|++. .++.. +..
T Consensus 76 ~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~-l~~~~----p~~-~~~l~~L~~L~Ls~N-~l~~~----~p~ 143 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTN-VSGAI----PDF-LSQIKTLVTLDFSYN-ALSGT----LPP 143 (313)
T ss_dssp TTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEEC-CEEEC----CGG-GGGCTTCCEEECCSS-EEESC----CCG
T ss_pred CCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCe-eCCcC----CHH-HhCCCCCCEEeCCCC-ccCCc----CCh
Confidence 5888888885444443211 123467889999988863 44211 011 135688999999887 34321 111
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCC-CceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRE-NDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~-~Lr~lDL~~Cp~ 217 (326)
.+.....++.+.+....+... +-..+.... .|+.+||..+..
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSEE
T ss_pred HHhcCCCCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCee
Confidence 222222222333333322211 011223444 788888887653
No 117
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=88.66 E-value=0.097 Score=51.82 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=34.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++ .+++... ......++|++|+|+++ +++.-+- +.......++|++|+|++.
T Consensus 353 ~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 353 SSFTFLNFTQN-VFTDSVF-QGCSTLKRLQTLILQRN-GLKNFFK---VALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp CCCCEEECCSS-CCCTTTT-TTCCSCSSCCEEECCSS-CCCBTTH---HHHTTTTCTTCCEEECTTS
T ss_pred CCceEEECCCC-ccccchh-hhhcccCCCCEEECCCC-CcCCccc---chhhhcCCCCCCEEECCCC
Confidence 57888888876 4554211 12245678888888876 4553210 1111235567777777665
No 118
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=88.62 E-value=0.2 Score=44.63 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=38.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++. ++...-. ....+++|++|+|++.. ++..+ +.....+.++|++|+|+++
T Consensus 100 ~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~----l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 100 SSLQKLVAVETN-LASLENF-PIGHLKTLKELNVAHNL-IQSFK----LPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTCCEEECTTSC-CCCSTTC-CCTTCTTCCEEECCSSC-CCCCC----CCGGGGGCTTCCEEECCSS
T ss_pred ccccEEECCCCC-ccccCch-hcccCCCCCEEECcCCc-cceec----CchhhccCCCCCEEECCCC
Confidence 589999998874 3321100 13467899999999874 44322 1111246789999999987
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=88.37 E-value=0.27 Score=47.86 Aligned_cols=11 Identities=9% Similarity=-0.170 Sum_probs=4.7
Q ss_pred CCCccEEEeCC
Q 020465 119 NPFIKKLYIPG 129 (326)
Q Consensus 119 cp~L~~L~Ls~ 129 (326)
.++|++|+|++
T Consensus 105 l~~L~~L~L~~ 115 (457)
T 3bz5_A 105 LTKLTYLNCDT 115 (457)
T ss_dssp CTTCCEEECCS
T ss_pred CCcCCEEECCC
Confidence 34444444444
No 120
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.20 E-value=0.1 Score=52.30 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=16.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
++|+.|+|+++ .|++..-. ....+++|++|+|+++
T Consensus 75 ~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n 109 (597)
T 3oja_B 75 RQVELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFN 109 (597)
T ss_dssp CCCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS
T ss_pred CCCcEEECCCC-CCCCCChH-HhcCCCCCCEEECCCC
Confidence 45666666665 23321100 1224556666666554
No 121
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=88.10 E-value=0.56 Score=47.51 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=44.6
Q ss_pred CCccEEecCCCCCCCHH------------H----HHHHHH--hCCCccEEEeCCCCCCC--HHHHHHHHHHHHhcCCCCC
Q 020465 94 GRLTTLALINCVRITNA------------G----LQRVIE--KNPFIKKLYIPGCTGLS--PQGVIEAVEKLSENDHTLE 153 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~------------g----L~~v~~--~cp~L~~L~Ls~C~~IT--d~gi~~~L~~L~~~C~~Lk 153 (326)
++|+.|+|+++. ++.. . +-.... +.++|++|+|+++.-.+ ++. + .+.++|+
T Consensus 206 ~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l----~~l~~L~ 276 (636)
T 4eco_A 206 TKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----L----KALPEMQ 276 (636)
T ss_dssp TTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----T----TTCSSCC
T ss_pred cCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----H----hcCCCCC
Confidence 689999999985 7662 1 111223 78999999999985222 222 2 3678999
Q ss_pred eeeccCccccch
Q 020465 154 ILHISGVYNITK 165 (326)
Q Consensus 154 ~L~LsgC~~lTd 165 (326)
+|+|+++..++.
T Consensus 277 ~L~Ls~n~~l~~ 288 (636)
T 4eco_A 277 LINVACNRGISG 288 (636)
T ss_dssp EEECTTCTTSCH
T ss_pred EEECcCCCCCcc
Confidence 999999965776
No 122
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=88.08 E-value=0.29 Score=49.30 Aligned_cols=14 Identities=0% Similarity=0.038 Sum_probs=9.0
Q ss_pred CCCCceeeecCCCC
Q 020465 203 NRENDHSIDVEICP 216 (326)
Q Consensus 203 ~c~~Lr~lDL~~Cp 216 (326)
.+..|+.+||..+.
T Consensus 169 ~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 169 ANSSLKKLELSSNQ 182 (680)
T ss_dssp TTCEESEEECTTCC
T ss_pred ccccccEEECCCCc
Confidence 34667777777663
No 123
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=87.98 E-value=0.082 Score=52.45 Aligned_cols=15 Identities=0% Similarity=-0.031 Sum_probs=8.6
Q ss_pred cCCCCceeeecCCCC
Q 020465 202 VNRENDHSIDVEICP 216 (326)
Q Consensus 202 ~~c~~Lr~lDL~~Cp 216 (326)
.++..|+.+||..+.
T Consensus 445 ~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNS 459 (606)
T ss_dssp TTCTTCCEEECTTCE
T ss_pred cCCCCCCEEECCCCc
Confidence 445566666666553
No 124
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=87.95 E-value=0.14 Score=47.03 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=15.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
++|+.|+|+++ .|++..- ....++++|++|+|+++
T Consensus 54 ~~l~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~L~~n 88 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRK-DDFKGLQHLYALVLVNN 88 (332)
T ss_dssp TTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS
T ss_pred CCCeEEECCCC-cCCccCH-hHhhCCCCCcEEECCCC
Confidence 35555555554 2332100 01234455555555554
No 125
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=87.84 E-value=0.047 Score=47.75 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=44.3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccch
Q 020465 93 NGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITK 165 (326)
Q Consensus 93 ~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd 165 (326)
+.+|+.|+|++. +|+.-.- .....+++|++|+|+++..++.-. -. .-.++++|++|+|++|..++.
T Consensus 30 ~~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~----~~-~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 30 PPSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLE----SH-SFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp CTTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEEC----TT-TEESCTTCCEEEEEEETTCCE
T ss_pred CCcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeC----Hh-HcCCCcCCcEEECCCCCCeeE
Confidence 458999999997 4553211 123468999999999985454322 00 114689999999998656654
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=87.62 E-value=0.079 Score=49.68 Aligned_cols=111 Identities=14% Similarity=0.020 Sum_probs=57.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
.+|+.|+|++. +|+.-.- .....+++|++|+|++. +++.-. ...-.+.++|++|+|++. .++... ..
T Consensus 64 ~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~L~~N-~i~~~~----~~ 130 (361)
T 2xot_A 64 TNLHSLLLSHN-HLNFISS-EAFVPVPNLRYLDLSSN-HLHTLD-----EFLFSDLQALEVLLLYNN-HIVVVD----RN 130 (361)
T ss_dssp TTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEEC-----TTTTTTCTTCCEEECCSS-CCCEEC----TT
T ss_pred cccCEEECCCC-cCCccCh-hhccCCCCCCEEECCCC-cCCcCC-----HHHhCCCcCCCEEECCCC-cccEEC----HH
Confidence 57888888886 4443110 12346788999999886 355321 011245688999999887 344321 11
Q ss_pred hcccCcchhhhhccCCcccccC-CccccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKA-RHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~-gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.....++.|.+....+.+-. +++........|+.|||.....
T Consensus 131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 1222222222333332222210 0100114578899999998753
No 127
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=86.00 E-value=0.11 Score=47.30 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=35.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|++. .|+.-.. ....++|+.|+|++. +++.- .......++|++|+|++.
T Consensus 55 ~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N-~l~~l------~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 55 TRLTQLNLDRA-ELTKLQV---DGTLPVLGTLDLSHN-QLQSL------PLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TTCCEEECTTS-CCCEEEC---CSCCTTCCEEECCSS-CCSSC------CCCTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCC-ccCcccC---CCCCCcCCEEECCCC-cCCcC------chhhccCCCCCEEECCCC
Confidence 57888888886 4543211 146788888888886 34421 111245677888888776
No 128
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=85.98 E-value=0.073 Score=48.92 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=36.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNIT 164 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lT 164 (326)
.+|+.|+|+++ .|++... .....+++|++|+|+++ +++... -.. ....++|++|+|+++ .++
T Consensus 193 ~~L~~L~l~~n-~i~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~----~~~-~~~l~~L~~L~L~~N-~l~ 254 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIEL-EDLLRYSKLYRLGLGHN-QIRMIE----NGS-LSFLPTLRELHLDNN-KLS 254 (332)
T ss_dssp SSCSCCBCCSS-CCCCCCT-TSSTTCTTCSCCBCCSS-CCCCCC----TTG-GGGCTTCCEEECCSS-CCC
T ss_pred CCCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCC-cCCcCC----hhH-hhCCCCCCEEECCCC-cCe
Confidence 57888888876 3443211 12235678888888876 344322 111 135678888888877 444
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=85.87 E-value=0.16 Score=44.28 Aligned_cols=109 Identities=12% Similarity=-0.006 Sum_probs=55.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
.+|+.|+|++. +|+.-.- ......++|++|+|++. +++... -.. -.+.++|++|+|++. .++.-. ..
T Consensus 32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~----~~~-~~~l~~L~~L~Ls~N-~l~~l~----~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNN-QISELA----PDA-FQGLRSLNSLVLYGN-KITELP----KS 98 (220)
T ss_dssp TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSS-CCCEEC----TTT-TTTCSSCCEEECCSS-CCCCCC----TT
T ss_pred cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCC-cCCCcC----HHH-hhCCcCCCEEECCCC-cCCccC----Hh
Confidence 57888888876 4442110 12245678888888876 354321 011 135678888888876 344210 00
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.....++.+.+....+..-. ...+.....|+.|||.....
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINCLR--VDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCC
T ss_pred HccCCCCCCEEECCCCCCCEeC--HHHcCCCCCCCEEECCCCcC
Confidence 0111112222233322221110 11345778899999998754
No 130
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=85.84 E-value=0.36 Score=44.04 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=33.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++ .|+... .....++++|+.|+|+++. ++..|+. ......+++|++|+++++
T Consensus 121 ~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 121 KTLQELRVHEN-EITKVR-KSVFNGLNQMIVVELGTNP-LKSSGIE---NGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp TTCCEEECCSS-CCCBBC-HHHHTTCTTCCEEECCSSC-CCGGGBC---TTGGGGCTTCCEEECCSS
T ss_pred ccccEEECCCC-cccccC-HhHhcCCccccEEECCCCc-CCccCcC---hhhccCCCCcCEEECCCC
Confidence 57888888776 344321 1233467778888887763 4433310 011135567777777665
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=85.81 E-value=0.15 Score=43.41 Aligned_cols=105 Identities=16% Similarity=0.070 Sum_probs=55.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .|++ +. ....+++|+.|+|+++. ++. +..+....++|++|+|+++ .+++- ..+.
T Consensus 48 ~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~-l~~------l~~~~~~~~~L~~L~L~~N-~l~~l--~~~~- 112 (198)
T 1ds9_A 48 KACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNL-IKK------IENLDAVADTLEELWISYN-QIASL--SGIE- 112 (198)
T ss_dssp TTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEE-ECS------CSSHHHHHHHCSEEEEEEE-ECCCH--HHHH-
T ss_pred CCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCC-ccc------ccchhhcCCcCCEEECcCC-cCCcC--Cccc-
Confidence 57888888876 4544 22 34567888888888763 442 1111223457888888877 55542 2222
Q ss_pred hcccCcchhhhhccCCcccccCCccccccCCCCceeeecCCCCC
Q 020465 174 HLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPS 217 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~gl~~l~~~c~~Lr~lDL~~Cp~ 217 (326)
.+.... .+.+....+.+-. ....+..++.|+.+|+..++.
T Consensus 113 ~l~~L~---~L~l~~N~i~~~~-~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 113 KLVNLR---VLYMSNNKITNWG-EIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHSS---EEEESEEECCCHH-HHHHHTTTTTCSEEEECSCHH
T ss_pred cCCCCC---EEECCCCcCCchh-HHHHHhcCCCCCEEEecCCcc
Confidence 122221 2222222211100 001245677888888887764
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=85.66 E-value=0.44 Score=48.02 Aligned_cols=104 Identities=14% Similarity=0.027 Sum_probs=59.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|+++ .|+ .+-.....+++|+.|+|++. +++. +.. ....++|++|+|++. .++.... ..
T Consensus 463 ~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~------lp~-l~~l~~L~~L~Ls~N-~l~~~~~---p~ 527 (567)
T 1dce_A 463 LLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALEN------VDG-VANLPRLQELLLCNN-RLQQSAA---IQ 527 (567)
T ss_dssp TTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCC------CGG-GTTCSSCCEEECCSS-CCCSSST---TG
T ss_pred ccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCC------Ccc-cCCCCCCcEEECCCC-CCCCCCC---cH
Confidence 58999999997 555 23224557899999999986 3542 221 246789999999987 4554210 11
Q ss_pred hcccCcchhhhhccCCcccccCC-ccccccCCCCceeeec
Q 020465 174 HLKLNSSRQNEQKRQPILYHKAR-HYPVLVNRENDHSIDV 212 (326)
Q Consensus 174 ~l~~~~~l~~l~~~~~~~~~~~g-l~~l~~~c~~Lr~lDL 212 (326)
.+.....++.+.+....+...-. +..+....++|+.||+
T Consensus 528 ~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 22223333333444333332211 1123345778888774
No 133
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=85.65 E-value=1.1 Score=41.34 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=38.3
Q ss_pred CCHHHHHHH---HHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchH-HHHHHHHhccc
Q 020465 107 ITNAGLQRV---IEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKE-HLRTLHSHLKL 177 (326)
Q Consensus 107 ITD~gL~~v---~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~-~l~~La~~l~~ 177 (326)
+++.++..+ ...+++|++|+|+++ +++.-. ..+...+++|++|+|++..-..+- .+..+..++..
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~-----~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRN-QLKSVP-----DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCC-CCCccC-----HHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 455555443 456788888888876 354221 111245678888888887544443 36666555443
No 134
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=85.41 E-value=0.45 Score=46.34 Aligned_cols=11 Identities=27% Similarity=0.102 Sum_probs=6.0
Q ss_pred CCccEEecCCC
Q 020465 94 GRLTTLALINC 104 (326)
Q Consensus 94 ~~L~~L~Ls~C 104 (326)
++|+.|+|+++
T Consensus 106 ~~L~~L~L~~N 116 (457)
T 3bz5_A 106 TKLTYLNCDTN 116 (457)
T ss_dssp TTCCEEECCSS
T ss_pred CcCCEEECCCC
Confidence 35555555554
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=84.99 E-value=0.2 Score=46.86 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=42.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccch
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITK 165 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd 165 (326)
++|+.|+|++. +|+.-. ......+++|+.|+|++. +|+... -.. ....++|++|+|++. .++.
T Consensus 88 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~----~~~-~~~l~~L~~L~L~~N-~l~~ 150 (361)
T 2xot_A 88 PNLRYLDLSSN-HLHTLD-EFLFSDLQALEVLLLYNN-HIVVVD----RNA-FEDMAQLQKLYLSQN-QISR 150 (361)
T ss_dssp TTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEEC----TTT-TTTCTTCCEEECCSS-CCCS
T ss_pred CCCCEEECCCC-cCCcCC-HHHhCCCcCCCEEECCCC-cccEEC----HHH-hCCcccCCEEECCCC-cCCe
Confidence 68999999997 454310 112356799999999997 465321 011 146789999999987 4543
No 136
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=84.89 E-value=0.24 Score=49.91 Aligned_cols=14 Identities=7% Similarity=-0.078 Sum_probs=8.5
Q ss_pred cCCCCceeeecCCC
Q 020465 202 VNRENDHSIDVEIC 215 (326)
Q Consensus 202 ~~c~~Lr~lDL~~C 215 (326)
.++..|+.+||..+
T Consensus 350 ~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 350 TGLINLKYLSLSNS 363 (680)
T ss_dssp TTCTTCCEEECTTC
T ss_pred ccccCCcEEECCCC
Confidence 45566666666655
No 137
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.03 E-value=0.49 Score=35.22 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=23.2
Q ss_pred hhchHhhhcCCCCCCC-----CcchhccccCCcccCCCC
Q 020465 271 MLCSDCWLQLPKCNLC-----NKPYCRQHANLGSNSSCS 304 (326)
Q Consensus 271 ~~c~~c~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 304 (326)
|.|.+|-.+|..=.+. +++||+.|-......|++
T Consensus 43 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 43 FRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp CBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 4566666666554443 688999888877777763
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=81.68 E-value=1.7 Score=39.85 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=51.2
Q ss_pred CCCCHHHHHHH----HhhcCCCccEEecCCCCC-----------------CCHHHHHHHHHhCCCccEEEeCCCCCCCH-
Q 020465 78 RRLSDEILMKI----TSKANGRLTTLALINCVR-----------------ITNAGLQRVIEKNPFIKKLYIPGCTGLSP- 135 (326)
Q Consensus 78 ~~itD~~L~~l----~~~~~~~L~~L~Ls~C~~-----------------ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd- 135 (326)
..++.+.+..+ ..++...-+.|+|+.-.. .-...+..+.+.+|+|+.|+|++- +++.
T Consensus 107 ~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l 185 (267)
T 3rw6_A 107 NELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRL 185 (267)
T ss_dssp TSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCC
T ss_pred ccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCC
Confidence 45666665544 345556777888865221 112223344467899999999985 4654
Q ss_pred HHHHHHHHHHHhcCCCCCeeeccCccccch
Q 020465 136 QGVIEAVEKLSENDHTLEILHISGVYNITK 165 (326)
Q Consensus 136 ~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd 165 (326)
.+ +..+...+++|++|+|++- .+++
T Consensus 186 ~~----l~~~~~~l~~L~~L~Ls~N-~i~~ 210 (267)
T 3rw6_A 186 DD----MSSIVQKAPNLKILNLSGN-ELKS 210 (267)
T ss_dssp GG----GTTHHHHSTTCCEEECTTS-CCCS
T ss_pred cc----chhHHhhCCCCCEEECCCC-ccCC
Confidence 23 3344467899999999875 4443
No 139
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=81.30 E-value=0.16 Score=46.59 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=34.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCC-CCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDH-TLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~-~Lk~L~LsgC 160 (326)
++|+.|+|+++. |+.. +-......++|++|+|+++. ++... -..+. ..+ +|++|+|++.
T Consensus 125 ~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~L~~N~-l~~~~----p~~l~-~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 125 KTLVTLDFSYNA-LSGT-LPPSISSLPNLVGITFDGNR-ISGAI----PDSYG-SFSKLFTSMTISRN 184 (313)
T ss_dssp TTCCEEECCSSE-EESC-CCGGGGGCTTCCEEECCSSC-CEEEC----CGGGG-CCCTTCCEEECCSS
T ss_pred CCCCEEeCCCCc-cCCc-CChHHhcCCCCCeEECcCCc-ccCcC----CHHHh-hhhhcCcEEECcCC
Confidence 588999998873 3311 11123467888888888863 44211 11122 233 7777777766
No 140
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=81.16 E-value=0.85 Score=42.54 Aligned_cols=57 Identities=23% Similarity=0.139 Sum_probs=30.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++ .+++ +.......|+|++|+|+++ +++.-. ..+ ...++|++|+|+++
T Consensus 272 ~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~~n-~l~~~~--~~~----~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 272 QRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHN-HLLHVE--RNQ----PQFDRLENLYLDHN 328 (390)
T ss_dssp SSCCEEECCSS-CCCE--EECSSSCCTTCCEEECCSS-CCCCCG--GGH----HHHTTCSEEECCSS
T ss_pred ccCCEEECCCC-cCcc--cCcccCCCCCCCEEECCCC-cceecC--ccc----cccCcCCEEECCCC
Confidence 57778888776 4443 1111234677777777776 343211 001 12356666666665
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=79.50 E-value=0.69 Score=38.23 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=44.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchH-HHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKE-HLRTLH 172 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~-~l~~La 172 (326)
++|+.|+|++. +|+... ..+....++|++|+|++. +++.-. ..+....++|++|+|++..-..+- .+..+.
T Consensus 76 ~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-----~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~ 147 (177)
T 2o6r_A 76 TKLTILYLHEN-KLQSLP-NGVFDKLTQLKELALDTN-QLKSVP-----DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 147 (177)
T ss_dssp TTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCC-----TTTTTTCTTCCEEECCSSCBCCCHHHHHHHH
T ss_pred CccCEEECCCC-CccccC-HHHhhCCcccCEEECcCC-cceEeC-----HHHhcCCcccCEEEecCCCeeccCccHHHHH
Confidence 57888888776 444210 112345678888888876 344211 112245688888888887543333 366666
Q ss_pred HhcccC
Q 020465 173 SHLKLN 178 (326)
Q Consensus 173 ~~l~~~ 178 (326)
.++...
T Consensus 148 ~~~~~~ 153 (177)
T 2o6r_A 148 RWLNKN 153 (177)
T ss_dssp HHHHHT
T ss_pred HHHhhC
Confidence 555443
No 142
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=79.02 E-value=0.79 Score=31.83 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=19.6
Q ss_pred CCCCCCCcchhccccCCcccCCCCCceeecccccc
Q 020465 281 PKCNLCNKPYCRQHANLGSNSSCSSGFICDICQYQ 315 (326)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (326)
.+|+||+|+.= ..+.-+.- + +.|||+.|...
T Consensus 12 ~~CSFCGk~~~--ev~~LIaG-p-gv~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQH--EVRKLIAG-P-SVYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTT--TSSCEEEC-S-SCEEEHHHHHH
T ss_pred cEecCCCCCHH--HhcccCCC-C-CCEehHHHHHH
Confidence 58999999642 12222222 2 57999999654
No 143
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=77.37 E-value=0.72 Score=47.14 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=14.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
++|+.|+|+++ +|+. + -...++|++|+|+++
T Consensus 61 ~~L~~L~L~~N-~l~~--l---p~~l~~L~~L~Ls~N 91 (622)
T 3g06_A 61 AHITTLVIPDN-NLTS--L---PALPPELRTLEVSGN 91 (622)
T ss_dssp TTCSEEEECSC-CCSC--C---CCCCTTCCEEEECSC
T ss_pred CCCcEEEecCC-CCCC--C---CCcCCCCCEEEcCCC
Confidence 35555555555 2331 1 113455555555554
No 144
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=74.95 E-value=1.2 Score=32.76 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=19.5
Q ss_pred CCCCCCCcchhccccCCcccCCCCCceeecccccc
Q 020465 281 PKCNLCNKPYCRQHANLGSNSSCSSGFICDICQYQ 315 (326)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (326)
.+|+||+|+.= -.+..+.- + +.|||+.|...
T Consensus 19 ~~CSFCGK~e~--eV~~LIaG-p-gvyICdeCI~~ 49 (67)
T 1ovx_A 19 LYCSFCGKSQH--EVRKLIAG-P-SVYICDECVDL 49 (67)
T ss_dssp CCCTTTCCCTT--TSSSEEEC-S-SCEEEHHHHHH
T ss_pred cEecCCCCCHH--HHcccCCC-C-CCChhHHHHHH
Confidence 58999999642 11222222 2 57999999544
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=70.84 E-value=2 Score=36.19 Aligned_cols=58 Identities=28% Similarity=0.332 Sum_probs=41.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
++|+.|+|+++ .|++ +. -...+++|+.|+|+++ .+++-+. +..+ ..+++|++|++++.
T Consensus 93 ~~L~~L~L~~N-~l~~--l~-~~~~l~~L~~L~l~~N-~i~~~~~---~~~l-~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 93 DTLEELWISYN-QIAS--LS-GIEKLVNLRVLYMSNN-KITNWGE---IDKL-AALDKLEDLLLAGN 150 (198)
T ss_dssp HHCSEEEEEEE-ECCC--HH-HHHHHHHSSEEEESEE-ECCCHHH---HHHH-TTTTTCSEEEECSC
T ss_pred CcCCEEECcCC-cCCc--CC-ccccCCCCCEEECCCC-cCCchhH---HHHH-hcCCCCCEEEecCC
Confidence 47999999987 5665 22 2456789999999987 4665331 2223 46789999999987
No 146
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=67.90 E-value=1.7 Score=43.97 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=16.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC 130 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C 130 (326)
++|+.|+|+++ +|+. +- ...++|+.|+|++.
T Consensus 80 ~~L~~L~Ls~N-~l~~--ip---~~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 80 PQITVLEITQN-ALIS--LP---ELPASLEYLDACDN 110 (571)
T ss_dssp TTCSEEECCSS-CCSC--CC---CCCTTCCEEECCSS
T ss_pred CCCCEEECcCC-CCcc--cc---cccCCCCEEEccCC
Confidence 45666666665 3431 11 33466666666665
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=66.87 E-value=1.4 Score=36.53 Aligned_cols=75 Identities=19% Similarity=0.104 Sum_probs=40.2
Q ss_pred CCccEEecCCCCCCCHHHHH-HHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchH-HHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQ-RVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKE-HLRTL 171 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~-~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~-~l~~L 171 (326)
.+|+.|+|++. +|+. +. .+....++|++|+|++. +++.-. .......++|++|+|++-.-..+- .+..+
T Consensus 54 ~~L~~L~Ls~N-~l~~--l~~~~f~~l~~L~~L~L~~N-~l~~~~-----~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l 124 (170)
T 3g39_A 54 TQLTRLDLDNN-QLTV--LPAGVFDKLTQLTQLSLNDN-QLKSIP-----RGAFDNLKSLTHIWLLNNPWDCACSDILYL 124 (170)
T ss_dssp TTCSEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCSSCBCTTBGGGHHH
T ss_pred ccCCEEECCCC-CcCc--cChhhccCCCCCCEEECCCC-ccCEeC-----HHHhcCCCCCCEEEeCCCCCCCCchhHHHH
Confidence 47888888776 3442 11 12245778888888775 343211 001135678888888875322221 24444
Q ss_pred HHhccc
Q 020465 172 HSHLKL 177 (326)
Q Consensus 172 a~~l~~ 177 (326)
..++..
T Consensus 125 ~~~l~~ 130 (170)
T 3g39_A 125 SRWISQ 130 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444433
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=66.03 E-value=1.4 Score=37.23 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=26.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCcc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVY 161 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~ 161 (326)
++|+.|+|++. +|+...- ......++|++|+|++. +++... -. .....++|++|+|++-.
T Consensus 78 ~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~----~~-~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 78 SHIQELQLGEN-KIKEISN-KMFLGLHQLKTLNLYDN-QISCVM----PG-SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECCSC-CCCEECS-SSSTTCTTCCEEECCSS-CCCEEC----TT-SSTTCTTCCEEECTTCC
T ss_pred ccCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCC-cCCeeC----HH-HhhcCCCCCEEEeCCCC
Confidence 35666666554 2332100 01223456666666654 233211 00 01234566666666553
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=65.00 E-value=4.1 Score=42.11 Aligned_cols=86 Identities=12% Similarity=-0.061 Sum_probs=49.2
Q ss_pred HHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHHhcccCcchhhhhccCCccccc
Q 020465 115 VIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHK 194 (326)
Q Consensus 115 v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~~l~~~~~l~~l~~~~~~~~~~ 194 (326)
.....++|+.|+|++.. ++.-. ..+ ...++|++|+|++. .++. |-..+..+..++.|.+....+.
T Consensus 219 ~~~~l~~L~~L~Ls~n~-l~~l~-----~~~-~~l~~L~~L~Ls~N-~l~~-----lp~~~~~l~~L~~L~Ls~N~l~-- 283 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-IFNIS-----ANI-FKYDFLTRLYLNGN-SLTE-----LPAEIKNLSNLRVLDLSHNRLT-- 283 (727)
T ss_dssp ---CCCCCCEEECTTSC-CSCCC-----GGG-GGCCSCSCCBCTTS-CCSC-----CCGGGGGGTTCCEEECTTSCCS--
T ss_pred hhccCCCCcEEECCCCC-CCCCC-----hhh-cCCCCCCEEEeeCC-cCcc-----cChhhhCCCCCCEEeCcCCcCC--
Confidence 34567899999999974 44211 011 26789999999987 4552 1222233333333344433332
Q ss_pred CCccccccCCCCceeeecCCCC
Q 020465 195 ARHYPVLVNRENDHSIDVEICP 216 (326)
Q Consensus 195 ~gl~~l~~~c~~Lr~lDL~~Cp 216 (326)
.+-..+.++..|+.|||..+.
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSC
T ss_pred -ccChhhcCCCCCCEEECCCCC
Confidence 122234677889999999874
No 150
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=62.25 E-value=2 Score=43.38 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=12.8
Q ss_pred cCCCCceeeecCCCCC
Q 020465 202 VNRENDHSIDVEICPS 217 (326)
Q Consensus 202 ~~c~~Lr~lDL~~Cp~ 217 (326)
...+.|+.|||...+.
T Consensus 227 ~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPL 242 (571)
T ss_dssp GGSCTTEEEECCSSSC
T ss_pred hcCCCCCEEEeeCCcC
Confidence 3478889999998886
No 151
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=62.23 E-value=7.8 Score=39.41 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=34.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLH 172 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La 172 (326)
++|+.|+|+++ +|+. + -...++|++|+|+++ +++. +..-..+.++|+.|+|++. .++......+.
T Consensus 241 ~~L~~L~Ls~N-~L~~--l---p~~~~~L~~L~Ls~N-~L~~------lp~~l~~l~~L~~L~L~~N-~l~~~~~~~l~ 305 (622)
T 3g06_A 241 SELKELMVSGN-RLTS--L---PMLPSGLLSLSVYRN-QLTR------LPESLIHLSSETTVNLEGN-PLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSS-CCSC--C---CCCCTTCCEEECCSS-CCCS------CCGGGGGSCTTCEEECCSC-CCCHHHHHHHH
T ss_pred CcCcEEECCCC-CCCc--C---CcccccCcEEeCCCC-CCCc------CCHHHhhccccCEEEecCC-CCCCcCHHHHH
Confidence 35555555554 3331 1 114566777777765 3441 1111245678888888877 46655554443
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=61.41 E-value=2.2 Score=35.52 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=28.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
.+|+.|+|++. +|+.-. .....+.++|++|+|++. +++.-. ..+..+.++|++|+|++.
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~-----~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSN-KLTAIP-----TGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCC-CCCccC-----hhHhCCcchhhEEECCCC
Confidence 46667776665 233100 112234566666766664 333211 001134566666666654
No 153
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=59.54 E-value=3.5 Score=39.91 Aligned_cols=13 Identities=15% Similarity=-0.135 Sum_probs=6.2
Q ss_pred CCCCceeeecCCC
Q 020465 203 NRENDHSIDVEIC 215 (326)
Q Consensus 203 ~c~~Lr~lDL~~C 215 (326)
....|+.+|++.+
T Consensus 235 ~l~~L~~L~l~~N 247 (454)
T 1jl5_A 235 NLPFLTTIYADNN 247 (454)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 3444555555443
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=58.83 E-value=2.3 Score=35.49 Aligned_cols=73 Identities=14% Similarity=0.072 Sum_probs=46.0
Q ss_pred CCccEEecCCCCCCCHHHHH-HHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchH-HHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQ-RVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKE-HLRTL 171 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~-~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~-~l~~L 171 (326)
++|+.|+|++. +|+. +. .+....++|+.|+|++. +++.-. .......++|++|+|++-.--.+- .+..+
T Consensus 57 ~~L~~L~Ls~N-~l~~--i~~~~~~~l~~L~~L~L~~N-~l~~l~-----~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 57 VNLQQLYFNSN-KLTA--IPTGVFDKLTQLTQLDLNDN-HLKSIP-----RGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp TTCCEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSS-CCCCCC-----TTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred cCCCEEECCCC-CCCc--cChhHhCCcchhhEEECCCC-ccceeC-----HHHhccccCCCEEEeCCCCcccccccHHHH
Confidence 58999999997 5553 11 12356899999999986 354211 111245789999999987433332 24445
Q ss_pred HHhc
Q 020465 172 HSHL 175 (326)
Q Consensus 172 a~~l 175 (326)
..++
T Consensus 128 ~~~~ 131 (174)
T 2r9u_A 128 RNWV 131 (174)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 155
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=56.76 E-value=5.4 Score=33.62 Aligned_cols=73 Identities=19% Similarity=0.109 Sum_probs=35.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCccccchHHHHHHHH
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHS 173 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC~~lTd~~l~~La~ 173 (326)
++|+.|+|++. .|+.-.- ......++|+.|+|++. +++.-. .......++|++|+|++-...-|-.+..+..
T Consensus 78 ~~L~~L~Ls~N-~l~~i~~-~~f~~l~~L~~L~L~~N-~l~~~~-----~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~ 149 (193)
T 2wfh_A 78 TQLLTLILSYN-RLRCIPP-RTFDGLKSLRLLSLHGN-DISVVP-----EGAFNDLSALSHLAIGANPLYCDCNMQWLSD 149 (193)
T ss_dssp TTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSS-CCCBCC-----TTTTTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CCCCEEECCCC-ccCEeCH-HHhCCCCCCCEEECCCC-CCCeeC-----hhhhhcCccccEEEeCCCCeecCCcCHHHHH
Confidence 46777777665 2332110 11234577777777764 343211 0011245677777777654333334444443
Q ss_pred h
Q 020465 174 H 174 (326)
Q Consensus 174 ~ 174 (326)
+
T Consensus 150 ~ 150 (193)
T 2wfh_A 150 W 150 (193)
T ss_dssp H
T ss_pred H
Confidence 3
No 156
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=54.77 E-value=5.4 Score=30.15 Aligned_cols=40 Identities=33% Similarity=0.637 Sum_probs=27.0
Q ss_pred ccccCccCCCCchhhhhhhhhhchHhhhcC--CCCCCCCcchh
Q 020465 251 CAECGGCIQPEEMEDAVCNDMLCSDCWLQL--PKCNLCNKPYC 291 (326)
Q Consensus 251 c~~cg~c~~~~~~~e~~~~~~~c~~c~~~~--~~~~~~~~~~~ 291 (326)
|..|+.=+.+..|-+ .=..++|..|+.++ |||..|++|-=
T Consensus 36 C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 36 CAKCLHPLANETFVA-KDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CSSSCCCTTSSCCEE-ETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred ccccCCCCCcCeeEC-cCCEEEChhHhhhhcCCccccCCCccc
Confidence 345666555444432 12367899999876 89999999874
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=54.45 E-value=3 Score=38.04 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=5.9
Q ss_pred CCCCC-ceeecc
Q 020465 301 SSCSS-GFICDI 311 (326)
Q Consensus 301 ~~~~~-~~~~~~ 311 (326)
..|++ .|.|.+
T Consensus 221 ~~D~G~~Y~C~a 232 (347)
T 2ifg_A 221 SDLNRKNVTCWA 232 (347)
T ss_dssp STTTTCCEEECC
T ss_pred hHHCCCeEEEEE
Confidence 34555 566654
No 158
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=54.21 E-value=5.1 Score=33.11 Aligned_cols=27 Identities=30% Similarity=0.701 Sum_probs=21.3
Q ss_pred hcCCCCCCCCcchhccccCCcccCCCCCceeecccc
Q 020465 278 LQLPKCNLCNKPYCRQHANLGSNSSCSSGFICDICQ 313 (326)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (326)
-++|+|+.||-.|- ..|..-|+|+.|.
T Consensus 25 ~~lP~CP~C~seyt---------YeDg~l~vCPeC~ 51 (138)
T 2akl_A 25 STLPPCPQCNSEYT---------YEDGALLVCPECA 51 (138)
T ss_dssp CCSCCCTTTCCCCC---------EECSSSEEETTTT
T ss_pred ccCCCCCCCCCcce---------EecCCeEECCccc
Confidence 36899999998885 3344779999993
No 159
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=54.09 E-value=4.3 Score=39.21 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=6.0
Q ss_pred hCCCccEEEeCCC
Q 020465 118 KNPFIKKLYIPGC 130 (326)
Q Consensus 118 ~cp~L~~L~Ls~C 130 (326)
..++|++|+++++
T Consensus 193 ~l~~L~~L~l~~N 205 (454)
T 1jl5_A 193 NLPFLTAIYADNN 205 (454)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 3444444444443
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=53.97 E-value=5.5 Score=32.77 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=38.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 93 NGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 93 ~~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
..+|+.|+|++. +|+.-. .....+.++|++|+|++. +++.-. ..+..+.++|++|+|++.
T Consensus 29 ~~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~-----~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNN-QLTVLP-----AGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCSS
T ss_pred CCCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCC-CcCccC-----hhhccCCCCCCEEECCCC
Confidence 368999999887 444210 112346789999999986 454221 111246788999999876
No 161
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=50.40 E-value=8.8 Score=28.27 Aligned_cols=29 Identities=34% Similarity=0.910 Sum_probs=22.2
Q ss_pred hhhhhchHhhhcC-----CCCCCCCcchhccccC
Q 020465 268 CNDMLCSDCWLQL-----PKCNLCNKPYCRQHAN 296 (326)
Q Consensus 268 ~~~~~c~~c~~~~-----~~~~~~~~~~~~~~~~ 296 (326)
|.-.+|..|+... .+|+.|.++|-++...
T Consensus 33 CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 8888888887665 4899999999765443
No 162
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.67 E-value=6.2 Score=28.40 Aligned_cols=26 Identities=23% Similarity=0.698 Sum_probs=18.9
Q ss_pred hhhhhh-hchHhhhcCCCCCCCCcchh
Q 020465 266 AVCNDM-LCSDCWLQLPKCNLCNKPYC 291 (326)
Q Consensus 266 ~~~~~~-~c~~c~~~~~~~~~~~~~~~ 291 (326)
+-|.-. +|.+|...+.+|+.|.++.=
T Consensus 41 ~pCgH~~~C~~C~~~~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 41 VPCGHLVTCKQCAEAVDKCPMCYTVIT 67 (75)
T ss_dssp SSSCCCCBCHHHHHHCSBCTTTCCBCC
T ss_pred ecCCCHHHHHHHhhCCCCCccCCceec
Confidence 345555 67777777899999888764
No 163
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=48.77 E-value=14 Score=33.45 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=40.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCC--CCCCHHHHHHHHHHHHhcCCCCCeeeccC
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGC--TGLSPQGVIEAVEKLSENDHTLEILHISG 159 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C--~~ITd~gi~~~L~~L~~~C~~Lk~L~Lsg 159 (326)
.+++.+.+.+ .+....+..+...+++|+.|+|++. +.|.+.+ -.+|.+|++|+|.+
T Consensus 202 ~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a--------F~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 202 RDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT--------FAQKKYLLKIKLPH 259 (329)
T ss_dssp GGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT--------TTTCTTCCEEECCT
T ss_pred cccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCCcceecHhh--------hhCCCCCCEEECCc
Confidence 3566666665 4777778878788999999999874 3333333 25788999999875
No 164
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.64 E-value=4.3 Score=30.52 Aligned_cols=28 Identities=25% Similarity=0.640 Sum_probs=22.3
Q ss_pred cccCccCCCCchhhh----hhhhhhchHhhhc
Q 020465 252 AECGGCIQPEEMEDA----VCNDMLCSDCWLQ 279 (326)
Q Consensus 252 ~~cg~c~~~~~~~e~----~~~~~~c~~c~~~ 279 (326)
.+|+-|.++-...++ .|.-.+|.+||.+
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~ 37 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ 37 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHH
Confidence 368889988666665 3999999999975
No 165
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.73 E-value=3.8 Score=29.95 Aligned_cols=26 Identities=27% Similarity=0.761 Sum_probs=20.0
Q ss_pred hhhhhhhchHhhhcC-------CCCCCCCcchh
Q 020465 266 AVCNDMLCSDCWLQL-------PKCNLCNKPYC 291 (326)
Q Consensus 266 ~~~~~~~c~~c~~~~-------~~~~~~~~~~~ 291 (326)
+-|.-.+|.+|+.+. .+|+.|.+++=
T Consensus 35 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 35 LHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 468888889997654 78998888764
No 166
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=47.53 E-value=8.4 Score=30.54 Aligned_cols=34 Identities=24% Similarity=0.718 Sum_probs=26.4
Q ss_pred CCCCCCCcchhccccCCcccCCCCCceeeccccccc
Q 020465 281 PKCNLCNKPYCRQHANLGSNSSCSSGFICDICQYQN 316 (326)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (326)
..|.+|.+.||..|..-....++..++.| |.+++
T Consensus 70 ~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c--~~~~~ 103 (107)
T 4gne_A 70 SFCEFCPHSFCKDHEKGALVPSALEGRLC--CSEHD 103 (107)
T ss_dssp EECSSSSCEECTTTCTTSCEECTTTTCEE--CTTSC
T ss_pred cCcCCCCcchhhhccCCcceecCCCCcee--cCCCC
Confidence 56999999999999987777655577776 55554
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=40.31 E-value=12 Score=33.93 Aligned_cols=60 Identities=20% Similarity=0.091 Sum_probs=38.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCCeeeccCc
Q 020465 94 GRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLEILHISGV 160 (326)
Q Consensus 94 ~~L~~L~Ls~C~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk~L~LsgC 160 (326)
.+|+.|+|++..+|+.-- .....+.++|+.|+|++. +++.-. .....+.++|++|+|++-
T Consensus 31 ~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-----~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVA-----PDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEEC-----TTGGGSCSCCCEEECCSS
T ss_pred CCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeC-----HHHhcCCcCCCEEeCCCC
Confidence 479999998744555310 012346789999999986 465321 111246789999999875
No 168
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.69 E-value=9.8 Score=27.22 Aligned_cols=25 Identities=24% Similarity=0.751 Sum_probs=15.7
Q ss_pred hhhhhhchHhhhc----------CCCCCCCCcchh
Q 020465 267 VCNDMLCSDCWLQ----------LPKCNLCNKPYC 291 (326)
Q Consensus 267 ~~~~~~c~~c~~~----------~~~~~~~~~~~~ 291 (326)
-|.-.+|.+|+.. -++|+.|.++.=
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 36 DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 3555556666543 578888877754
No 169
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=39.01 E-value=11 Score=29.66 Aligned_cols=40 Identities=20% Similarity=0.551 Sum_probs=27.8
Q ss_pred ccccCccCCCCchhhhhhhhhhchHhhhc--CCCCCCCCcchh
Q 020465 251 CAECGGCIQPEEMEDAVCNDMLCSDCWLQ--LPKCNLCNKPYC 291 (326)
Q Consensus 251 c~~cg~c~~~~~~~e~~~~~~~c~~c~~~--~~~~~~~~~~~~ 291 (326)
|..|+.=+++..|-+ .-..+.|..|+.+ .|||..|++|-=
T Consensus 33 C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 33 CFDCDSILAGEIYVM-VNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp CTTTCCBCTTSEEEE-ETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred cCCCCCCCCcCEEEe-ECCEEechHHhCcCcCccCcccCCcCC
Confidence 456666666544433 1246789999876 589999999876
No 170
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.48 E-value=11 Score=26.97 Aligned_cols=26 Identities=35% Similarity=0.839 Sum_probs=17.6
Q ss_pred hhhhhhhchHhhhc----------CCCCCCCCcchh
Q 020465 266 AVCNDMLCSDCWLQ----------LPKCNLCNKPYC 291 (326)
Q Consensus 266 ~~~~~~~c~~c~~~----------~~~~~~~~~~~~ 291 (326)
+-|.-.+|.+|..+ .++|+.|.++.=
T Consensus 35 ~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 35 ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 45777777777654 567877777653
No 171
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=36.98 E-value=21 Score=32.20 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHhhcCCCccEEecCCC--CCCCHHHHHHHHHhCCCccEEEeCCCCCCCHHHHHHHHHHHHhcCCCCC-ee
Q 020465 79 RLSDEILMKITSKANGRLTTLALINC--VRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKLSENDHTLE-IL 155 (326)
Q Consensus 79 ~itD~~L~~l~~~~~~~L~~L~Ls~C--~~ITD~gL~~v~~~cp~L~~L~Ls~C~~ITd~gi~~~L~~L~~~C~~Lk-~L 155 (326)
.+....+..+...+ .+|+.|+|.+. ..|.+..| .+|++|++|+|+. +++.-+ ...-.+|++|+ .|
T Consensus 212 ~l~~~~~~~l~~~~-~~L~~l~L~~n~i~~I~~~aF----~~~~~L~~l~l~~--ni~~I~-----~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 212 KLDNADFKLIRDYM-PNLVSLDISKTNATTIPDFTF----AQKKYLLKIKLPH--NLKTIG-----QRVFSNCGRLAGTL 279 (329)
T ss_dssp CCCHHHHHHHHHHC-TTCCEEECTTBCCCEECTTTT----TTCTTCCEEECCT--TCCEEC-----TTTTTTCTTCCEEE
T ss_pred eecHHHHHHHHHhc-CCCeEEECCCCCcceecHhhh----hCCCCCCEEECCc--ccceeh-----HHHhhCChhccEEE
Confidence 35566666665554 79999999974 33444333 4789999999987 244322 11125789999 99
Q ss_pred eccC
Q 020465 156 HISG 159 (326)
Q Consensus 156 ~Lsg 159 (326)
+|..
T Consensus 280 ~l~~ 283 (329)
T 3sb4_A 280 ELPA 283 (329)
T ss_dssp EECT
T ss_pred EEcc
Confidence 9986
No 172
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.32 E-value=9.2 Score=26.82 Aligned_cols=25 Identities=32% Similarity=0.801 Sum_probs=15.8
Q ss_pred hhhhhhhchHhhhcCC-------CCCCCCcch
Q 020465 266 AVCNDMLCSDCWLQLP-------KCNLCNKPY 290 (326)
Q Consensus 266 ~~~~~~~c~~c~~~~~-------~~~~~~~~~ 290 (326)
+-|.-.+|.+|+.+.. +|+.|.++.
T Consensus 36 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 36 IDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 4577777777765443 576666654
No 173
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=35.18 E-value=9.4 Score=27.16 Aligned_cols=26 Identities=27% Similarity=0.738 Sum_probs=16.3
Q ss_pred hhhhhhhchHhhhc-----------CCCCCCCCcchh
Q 020465 266 AVCNDMLCSDCWLQ-----------LPKCNLCNKPYC 291 (326)
Q Consensus 266 ~~~~~~~c~~c~~~-----------~~~~~~~~~~~~ 291 (326)
+-|.-.+|.+|+.+ .++|+.|.++.=
T Consensus 28 l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 28 LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 45667777777664 456666666543
No 174
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=34.43 E-value=14 Score=31.09 Aligned_cols=60 Identities=18% Similarity=0.440 Sum_probs=38.6
Q ss_pred cccccCccCCCCchhhhhhhhhhchHhhhcC--CCCCCCCcchhcc------ccCCcccCCCCCceeecccccc
Q 020465 250 RCAECGGCIQPEEMEDAVCNDMLCSDCWLQL--PKCNLCNKPYCRQ------HANLGSNSSCSSGFICDICQYQ 315 (326)
Q Consensus 250 rc~~cg~c~~~~~~~e~~~~~~~c~~c~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 315 (326)
+|..|+.=+.+.-|+ .=..+.|..|+.++ |||..|++|-=.. ....|+. .=|.|..|...
T Consensus 89 ~C~~C~~~L~~~~f~--~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~----~CF~C~~C~~~ 156 (182)
T 2jtn_A 89 KCSDCHVPLAERCFS--RGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHL----HCFACVVCKRQ 156 (182)
T ss_dssp SCTTTCCCCSSCCEE--ETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCT----TTCCCTTTCCC
T ss_pred ccCCCCCccCCCcee--ECCEeeecCccccccccccccCCCccCCCceEEecCCCCEEe----CCCcCCCCCCC
Confidence 345677777766563 23568899999765 8999999976421 1122222 45888888543
No 175
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=31.44 E-value=20 Score=25.60 Aligned_cols=24 Identities=25% Similarity=0.761 Sum_probs=19.2
Q ss_pred hhhhh-hchHhhhcCCCCCCCCcch
Q 020465 267 VCNDM-LCSDCWLQLPKCNLCNKPY 290 (326)
Q Consensus 267 ~~~~~-~c~~c~~~~~~~~~~~~~~ 290 (326)
-|.-. +|.+|..++.+|+.|.++.
T Consensus 41 pCgH~~~C~~C~~~~~~CP~Cr~~i 65 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAVDKCPMCYTVI 65 (74)
T ss_dssp TTCCBCCCHHHHTTCSBCTTTCCBC
T ss_pred CCCChhHHHHhhhcCccCCCcCcCc
Confidence 56667 8888888888998888765
No 176
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.35 E-value=18 Score=25.36 Aligned_cols=38 Identities=24% Similarity=0.676 Sum_probs=23.8
Q ss_pred ccCccCCCCch-hhh---hhhhhhchHhhhc----CCCCCCCCcch
Q 020465 253 ECGGCIQPEEM-EDA---VCNDMLCSDCWLQ----LPKCNLCNKPY 290 (326)
Q Consensus 253 ~cg~c~~~~~~-~e~---~~~~~~c~~c~~~----~~~~~~~~~~~ 290 (326)
.|.-|.+.-+. +.. -|.-.+|.+|..+ -++|+.|.++.
T Consensus 17 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp BCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 45556554222 222 6888888888643 46788887765
No 177
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.01 E-value=20 Score=25.38 Aligned_cols=27 Identities=22% Similarity=0.653 Sum_probs=20.7
Q ss_pred hhhhhh-hchHhhhcCCCCCCCCcchhc
Q 020465 266 AVCNDM-LCSDCWLQLPKCNLCNKPYCR 292 (326)
Q Consensus 266 ~~~~~~-~c~~c~~~~~~~~~~~~~~~~ 292 (326)
.-|..+ +|.+|...+.+|+.|.++.-.
T Consensus 31 ~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 31 LPCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp TTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred ECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 457777 888888888999888776543
No 178
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.71 E-value=18 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.639 Sum_probs=18.8
Q ss_pred hhhhhhhchHhhhcC----CCCCCCCcchh
Q 020465 266 AVCNDMLCSDCWLQL----PKCNLCNKPYC 291 (326)
Q Consensus 266 ~~~~~~~c~~c~~~~----~~~~~~~~~~~ 291 (326)
+-|.-.+|.+|..+. ++|+.|.++.=
T Consensus 31 ~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 31 LPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp ETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred ccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 568888899996654 56877777653
No 179
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.08 E-value=11 Score=27.50 Aligned_cols=14 Identities=29% Similarity=0.620 Sum_probs=6.5
Q ss_pred ccccccCccCCCCc
Q 020465 249 PRCAECGGCIQPEE 262 (326)
Q Consensus 249 ~rc~~cg~c~~~~~ 262 (326)
++|..||.=|.+.|
T Consensus 16 ~~C~~C~~~I~~~~ 29 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQ 29 (80)
T ss_dssp SCCTTTCCCCSSSC
T ss_pred CCCcCcCCeeCCCe
Confidence 34555555554433
No 180
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=28.39 E-value=24 Score=25.73 Aligned_cols=28 Identities=25% Similarity=0.629 Sum_probs=22.9
Q ss_pred hhhhhh-hchHhhhcCCCCCCCCcchhcc
Q 020465 266 AVCNDM-LCSDCWLQLPKCNLCNKPYCRQ 293 (326)
Q Consensus 266 ~~~~~~-~c~~c~~~~~~~~~~~~~~~~~ 293 (326)
.-|.-. +|.+|...+.+|+.|.++.-+.
T Consensus 34 ~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 34 CPCGHTVCCESCAAQLQSCPVCRSRVEHV 62 (79)
T ss_dssp ETTCBCCBCHHHHTTCSBCTTTCCBCCEE
T ss_pred ECCCCHHHHHHHHHhcCcCCCCCchhhCe
Confidence 357777 8999999999999998887654
No 181
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.92 E-value=12 Score=25.71 Aligned_cols=26 Identities=35% Similarity=0.804 Sum_probs=19.9
Q ss_pred hhhhhhhchHhhhcC-----CCCCCCCcchh
Q 020465 266 AVCNDMLCSDCWLQL-----PKCNLCNKPYC 291 (326)
Q Consensus 266 ~~~~~~~c~~c~~~~-----~~~~~~~~~~~ 291 (326)
+.|.-.+|.+|..+. .+|+.|.++.=
T Consensus 24 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 24 NVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 468888888887655 57988888764
No 182
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=27.62 E-value=17 Score=30.18 Aligned_cols=21 Identities=24% Similarity=0.619 Sum_probs=10.7
Q ss_pred hhhchHhhhc--CCCCCCCCcch
Q 020465 270 DMLCSDCWLQ--LPKCNLCNKPY 290 (326)
Q Consensus 270 ~~~c~~c~~~--~~~~~~~~~~~ 290 (326)
.+.|.+|+.+ .|||..|++|-
T Consensus 53 ~~yC~~~y~~~f~~~C~~C~~~I 75 (169)
T 2rgt_A 53 SVYCKDDFFKRFGTKCAACQLGI 75 (169)
T ss_dssp CEECHHHHHHHHSCBCTTTCCBC
T ss_pred eeeeccccccccccccccccccc
Confidence 4455555543 25555555543
No 183
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.59 E-value=18 Score=29.09 Aligned_cols=39 Identities=18% Similarity=0.474 Sum_probs=26.8
Q ss_pred cCCCCCCCCcchhccccCCcccCCC--CCceeecccccccc
Q 020465 279 QLPKCNLCNKPYCRQHANLGSNSSC--SSGFICDICQYQNQ 317 (326)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 317 (326)
.--.|..|++.+|..+++.....|. .+.-+|+.|+..-|
T Consensus 84 RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 84 RRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQ 124 (125)
T ss_dssp CCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHHHTT
T ss_pred ccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHHHHhc
Confidence 3457888888888888887766654 35567888865433
No 184
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.61 E-value=25 Score=24.88 Aligned_cols=26 Identities=27% Similarity=0.723 Sum_probs=18.5
Q ss_pred hhhhhhchHhhh----cCCCCCCCCcchhc
Q 020465 267 VCNDMLCSDCWL----QLPKCNLCNKPYCR 292 (326)
Q Consensus 267 ~~~~~~c~~c~~----~~~~~~~~~~~~~~ 292 (326)
.|.-.+|.+|.. +-++|+.|.++.=.
T Consensus 35 ~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 35 PCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 577788888864 35678888777554
No 185
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=25.52 E-value=17 Score=23.76 Aligned_cols=38 Identities=24% Similarity=0.702 Sum_probs=24.2
Q ss_pred cccCccCCCC-c----hhhhhhhhhhchHhhhcC----CCCCCCCcc
Q 020465 252 AECGGCIQPE-E----MEDAVCNDMLCSDCWLQL----PKCNLCNKP 289 (326)
Q Consensus 252 ~~cg~c~~~~-~----~~e~~~~~~~c~~c~~~~----~~~~~~~~~ 289 (326)
.+|.-|.+.- + ..-+.|.-.+|.+|..+. ++|+.|.++
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 52 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCS
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCc
Confidence 3566666652 2 223568888888887543 678777765
No 186
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=25.46 E-value=33 Score=23.88 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=20.8
Q ss_pred eecCCCCCCccchhhccccccccCCCCCCcCCCCccccc
Q 020465 210 IDVEICPSCSEVRMVFDCSKQLCKGKPPARCCRGCYHCI 248 (326)
Q Consensus 210 lDL~~Cp~c~~~~Lv~dCp~~~C~~~~~~~~Cr~c~~ci 248 (326)
+.+-.||.|....|++| ...|...|..|++-+
T Consensus 9 l~~~~Cp~C~~~~lv~D-------~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 9 LPRVTCPNHPDAILVED-------YRAGDMICPECGLVV 40 (58)
T ss_dssp CSCCSBTTBSSSCCEEC-------SSSCCEECTTTCCEE
T ss_pred cccccCcCCCCCceeEe-------CCCCeEEeCCCCCEE
Confidence 34447999988779888 222555666665554
No 187
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=25.44 E-value=25 Score=27.23 Aligned_cols=47 Identities=23% Similarity=0.505 Sum_probs=31.5
Q ss_pred hhhhhhhchHhhhc----CCCCCCCCcchhccccCCcccCCCCCceeeccccc
Q 020465 266 AVCNDMLCSDCWLQ----LPKCNLCNKPYCRQHANLGSNSSCSSGFICDICQY 314 (326)
Q Consensus 266 ~~~~~~~c~~c~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (326)
+.|.-.+|.+|+.+ -.+|+.|.++.=.+.... ...+...+.|..|.+
T Consensus 30 ~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~--l~i~~~~~~C~iC~~ 80 (133)
T 4ap4_A 30 TECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP--IYIGSGTVSCPICMD 80 (133)
T ss_dssp ETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE--CBCSSSSCBCTTTCC
T ss_pred cCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc--cccCCCCCCCCCCCC
Confidence 35899999999853 468999988875433221 122237788999954
No 188
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.96 E-value=23 Score=24.35 Aligned_cols=25 Identities=28% Similarity=0.874 Sum_probs=15.5
Q ss_pred hhhhhhhchHhhh-----cCCCCCCCCcch
Q 020465 266 AVCNDMLCSDCWL-----QLPKCNLCNKPY 290 (326)
Q Consensus 266 ~~~~~~~c~~c~~-----~~~~~~~~~~~~ 290 (326)
+-|.-.+|.+|.. .-++|+.|.++.
T Consensus 31 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 31 TECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 4566666666654 345677777664
No 189
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.91 E-value=39 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=21.8
Q ss_pred CCCCCCCCcchhccccCCcccCCCCCceeecccccccc
Q 020465 280 LPKCNLCNKPYCRQHANLGSNSSCSSGFICDICQYQNQ 317 (326)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (326)
--.|+||+|..-+|.+ .+...|..|.+.-+
T Consensus 26 ky~C~fCgk~~vkR~a--------~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGA--------AGIWTCSCCKKTVA 55 (72)
T ss_dssp CBCCSSCCSSCBSBCS--------SSCBCCSSSCCCCC
T ss_pred CccCCCCCCceeEecC--------CCeEECCCCCCEEe
Confidence 3469999998766532 38889999976544
No 190
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.57 E-value=16 Score=25.59 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=7.5
Q ss_pred ccccccCccCCC
Q 020465 249 PRCAECGGCIQP 260 (326)
Q Consensus 249 ~rc~~cg~c~~~ 260 (326)
++|..||.=|.+
T Consensus 6 ~~C~~C~~~I~~ 17 (72)
T 1x4l_A 6 SGCAGCTNPISG 17 (72)
T ss_dssp CSBTTTTBCCCC
T ss_pred CCCcCCCccccC
Confidence 456666666664
No 191
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=22.50 E-value=32 Score=22.38 Aligned_cols=38 Identities=24% Similarity=0.551 Sum_probs=22.5
Q ss_pred cccCccCCCCchhh----h-hhhhhhchHhhhc----CCCCCCCCcc
Q 020465 252 AECGGCIQPEEMED----A-VCNDMLCSDCWLQ----LPKCNLCNKP 289 (326)
Q Consensus 252 ~~cg~c~~~~~~~e----~-~~~~~~c~~c~~~----~~~~~~~~~~ 289 (326)
.+|.-|.+.-+.++ . .|.-.+|.+|..+ .++|+.|.++
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCE
Confidence 35667766533322 2 3888888888654 4456666544
No 192
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.82 E-value=23 Score=25.41 Aligned_cols=17 Identities=24% Similarity=0.831 Sum_probs=14.5
Q ss_pred CCCCCCCCcchhccccC
Q 020465 280 LPKCNLCNKPYCRQHAN 296 (326)
Q Consensus 280 ~~~~~~~~~~~~~~~~~ 296 (326)
-.+|.+|++-||..|-.
T Consensus 27 ~f~C~~C~~~FC~~HR~ 43 (63)
T 1x4v_A 27 KLTCERCSRNFCIKHRH 43 (63)
T ss_dssp CCBCSSSCCBCCHHHHS
T ss_pred ceECCCCCcccCcccCC
Confidence 45899999999998864
No 193
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.19 E-value=28 Score=27.68 Aligned_cols=15 Identities=47% Similarity=0.820 Sum_probs=10.0
Q ss_pred cccccccCccCCCCc
Q 020465 248 IPRCAECGGCIQPEE 262 (326)
Q Consensus 248 i~rc~~cg~c~~~~~ 262 (326)
.++|..||.=|.+.+
T Consensus 61 ~~~C~~C~~~I~~~~ 75 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF 75 (123)
T ss_dssp CSBBSSSSSBCCSSS
T ss_pred CCcCcCCCCCcCCcE
Confidence 467777777776554
No 194
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=20.40 E-value=69 Score=29.59 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=6.3
Q ss_pred hCCCccEEEeC
Q 020465 118 KNPFIKKLYIP 128 (326)
Q Consensus 118 ~cp~L~~L~Ls 128 (326)
+|++|++++|+
T Consensus 309 ~c~~L~~i~lp 319 (394)
T 4gt6_A 309 GCISLKSIDIP 319 (394)
T ss_dssp TCTTCCEEECC
T ss_pred CCCCcCEEEeC
Confidence 45566666664
Done!