BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020469
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 145/306 (47%), Gaps = 37/306 (12%)
Query: 16 FDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFD--RVSKKFVNIQQDGMNKKYV 73
D GA +FT + V++W++ G VAEW L +F R+S ++V
Sbjct: 51 LDXGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPS------PDEQVRWV 104
Query: 74 GVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKN 133
G PG ++I +A V + E + W++ +GQ+ G F+ V+
Sbjct: 105 GKPGXSAITRAXRGDXPVSFSCRI----TEVFRGEEHWNLLDAEGQNHGPFSHVI----- 155
Query: 134 VVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS 193
+ +P + T L AP LA + + +P +A+ LAF PL + P +G QDS
Sbjct: 156 IATPAPQAST------LLAAAPKLASVVAGVKXDPTWAVALAFETPLQT-PXQGCFVQDS 208
Query: 194 EVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEF- 252
L W + SKP R + W+LH+T+ ++R + +A+ ++V E + F
Sbjct: 209 P-LDWLARNRSKPERDDTLDTWILHATSQWSRQNL---------DASREQVIEHLHGAFA 258
Query: 253 QGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSG 312
+ + P P+F AHRW A PA A E L D + +CGD+C+S VEGA LSG
Sbjct: 259 ELIDCTXPAPVFSLAHRWLYARPAG--AHEWGALSDADLGIYVCGDWCLSGRVEGAWLSG 316
Query: 313 LDAASK 318
+AA +
Sbjct: 317 QEAARR 322
>pdb|3QJ4|A Chain A, Crystal Structure Of Human Renalase (Isoform 1)
pdb|3QJ4|B Chain B, Crystal Structure Of Human Renalase (Isoform 1)
Length = 342
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 96/256 (37%), Gaps = 42/256 (16%)
Query: 72 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131
+V G++SI K + G E F V + +DK W VS G S QF+ +V +
Sbjct: 105 FVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTG-SPEQFDLIVLT- 160
Query: 132 KNVVSPRFRDVTGRPPPLDLTFAPDLAV--------KLEEIPVNPCFALMLAFSEPLS-S 182
P P L D+ +LE + + +AL L +
Sbjct: 161 -------------MPVPEILQLQGDITTLISECQRQQLEAVSYSSRYALGLFYEAGTKID 207
Query: 183 IPVKGFSFQDSEVLSWAHCDSSKPGRSANSER----WVLHSTADYARTVIAQTGLQKPSE 238
+P G + + + D+ K R+ S V+H+T + T + E
Sbjct: 208 VPWAGQYITSNPCIRFVSIDNKK--RNIESSEIGPSLVIHTTVPFGVTYL---------E 256
Query: 239 ATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRW-GSAFPAASIAKEERCLWDVKRRLAICG 297
+++ V E +FQ+ + +P PI K +W S A+ + K LA G
Sbjct: 257 HSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANCPGQMTLHHKPFLACGG 316
Query: 298 DFCVSPNVEGAILSGL 313
D N +G I S L
Sbjct: 317 DGFTQSNFDGCITSAL 332
>pdb|2XTL|A Chain A, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
pdb|2XTL|B Chain B, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
Length = 452
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 6/119 (5%)
Query: 6 ETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQ 65
+T++DG E L GA F + LA +SG K + S V
Sbjct: 274 KTNKDGKERL--AGATFLVKKDGKYLAR----KSGVATDAEKAAVDSTKSALDAAVKAYN 327
Query: 66 DGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQF 124
D +K G G +++ Q F +EW+EDKN +V L GQF
Sbjct: 328 DLTKEKQEGQDGKSALATVSEKQKAYNDAFVKANYSYEWVEDKNAKNVVKLISNDKGQF 386
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 22 FFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVS-KKFVNIQQDGMNK 70
FFT D LALV E E L E ++L + V+ ++ +N + D +NK
Sbjct: 151 FFTRNKADYLALVFEREDSYLGREVTLDLSQYHAVAVRRVLNTESDLVNK 200
>pdb|1GFF|1 Chain 1, The Atomic Structure Of The Degraded Procapsid Particle Of
The Bacteriophage G4: Induced Structural Changes In The
Presence Of Calcium Ions And Functional Implications
Length = 426
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 111 WSVSGLDGQSLGQFNGVVASDKNVVSPRF 139
+ V G D SLGQF+G V N PRF
Sbjct: 247 YDVDGTDQSSLGQFSGRVQQTFNHKVPRF 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,287,992
Number of Sequences: 62578
Number of extensions: 432255
Number of successful extensions: 957
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 5
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)