Query 020469
Match_columns 326
No_of_seqs 207 out of 1223
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 100.0 6.9E-65 1.5E-69 432.5 18.3 290 1-323 40-331 (331)
2 TIGR00562 proto_IX_ox protopor 99.9 2.1E-26 4.5E-31 222.0 19.0 231 72-324 218-461 (462)
3 PLN02576 protoporphyrinogen ox 99.9 1.2E-24 2.5E-29 211.7 19.1 234 70-324 230-488 (496)
4 PRK12416 protoporphyrinogen ox 99.9 3E-23 6.4E-28 200.2 20.2 229 71-324 218-462 (463)
5 PRK11883 protoporphyrinogen ox 99.9 2.9E-22 6.2E-27 192.5 20.8 228 71-321 213-450 (451)
6 TIGR03467 HpnE squalene-associ 99.9 3.6E-20 7.9E-25 176.0 21.3 218 72-320 189-418 (419)
7 PLN02268 probable polyamine ox 99.8 1.2E-19 2.6E-24 173.7 21.4 225 72-323 194-434 (435)
8 PLN02328 lysine-specific histo 99.8 1.8E-19 3.9E-24 180.2 20.6 228 69-324 427-680 (808)
9 PLN02529 lysine-specific histo 99.8 2E-19 4.4E-24 179.0 20.0 232 69-325 347-600 (738)
10 COG1232 HemY Protoporphyrinoge 99.8 1.1E-18 2.5E-23 163.9 16.9 226 71-320 207-443 (444)
11 PLN03000 amine oxidase 99.8 1.8E-17 4E-22 165.9 20.4 232 69-325 371-625 (881)
12 PRK07233 hypothetical protein; 99.8 1.8E-17 3.8E-22 158.4 19.3 228 71-324 190-432 (434)
13 PF01593 Amino_oxidase: Flavin 99.8 1.6E-17 3.4E-22 157.4 15.3 227 72-320 205-450 (450)
14 PLN02976 amine oxidase 99.7 1.7E-16 3.7E-21 163.5 21.8 233 70-324 927-1187(1713)
15 PLN02676 polyamine oxidase 99.7 3.3E-16 7E-21 151.5 21.4 227 75-324 220-474 (487)
16 COG1231 Monoamine oxidase [Ami 99.7 1.5E-16 3.2E-21 146.9 17.4 235 69-325 199-449 (450)
17 PLN02568 polyamine oxidase 99.7 4.4E-15 9.6E-20 144.9 20.9 236 70-326 233-538 (539)
18 KOG1276 Protoporphyrinogen oxi 99.6 1.8E-15 4E-20 137.7 12.8 233 68-320 238-490 (491)
19 PLN02612 phytoene desaturase 99.6 1.4E-14 3E-19 142.7 19.8 223 79-325 308-550 (567)
20 TIGR02731 phytoene_desat phyto 99.6 7.4E-14 1.6E-18 134.5 19.7 217 78-319 212-452 (453)
21 TIGR02732 zeta_caro_desat caro 99.6 4.2E-14 9.2E-19 136.6 17.4 221 78-320 222-474 (474)
22 PRK07208 hypothetical protein; 99.5 3.6E-13 7.7E-18 130.6 16.2 227 75-322 214-460 (479)
23 PLN02487 zeta-carotene desatur 99.5 2E-12 4.4E-17 126.5 18.3 232 71-323 286-553 (569)
24 TIGR02733 desat_CrtD C-3',4' d 99.3 1.8E-10 3.8E-15 112.2 22.2 229 72-321 225-490 (492)
25 KOG0029 Amine oxidase [Seconda 99.3 2.3E-10 4.9E-15 110.4 17.5 233 70-324 210-460 (501)
26 TIGR02734 crtI_fam phytoene de 99.1 9.3E-09 2E-13 100.4 19.1 233 71-324 211-493 (502)
27 TIGR02730 carot_isom carotene 99.0 3E-08 6.5E-13 96.6 19.4 238 71-323 221-492 (493)
28 KOG0685 Flavin-containing amin 99.0 1.4E-08 3E-13 94.7 15.5 227 73-322 217-490 (498)
29 COG2907 Predicted NAD/FAD-bind 98.8 1.5E-08 3.2E-13 90.8 7.1 98 68-178 209-306 (447)
30 COG1233 Phytoene dehydrogenase 97.7 0.00069 1.5E-08 66.0 13.5 60 70-131 215-277 (487)
31 TIGR01984 UbiH 2-polyprenyl-6- 97.6 0.0099 2.2E-07 55.8 19.6 50 79-131 105-158 (382)
32 KOG4254 Phytoene desaturase [C 97.3 0.011 2.4E-07 55.5 14.4 68 72-143 257-327 (561)
33 PRK09126 hypothetical protein; 97.2 0.037 8E-07 52.2 17.6 48 81-131 116-163 (392)
34 PF07156 Prenylcys_lyase: Pren 97.1 0.019 4.1E-07 53.8 14.3 66 68-137 117-186 (368)
35 PRK07494 2-octaprenyl-6-methox 97.0 0.055 1.2E-06 50.9 17.4 49 79-131 115-163 (388)
36 TIGR01988 Ubi-OHases Ubiquinon 96.9 0.16 3.6E-06 47.4 19.0 50 79-131 106-159 (385)
37 PRK05732 2-octaprenyl-6-methox 96.8 0.24 5.2E-06 46.6 19.8 48 81-131 118-165 (395)
38 PRK08850 2-octaprenyl-6-methox 96.8 0.16 3.4E-06 48.2 18.5 48 81-131 117-164 (405)
39 COG0654 UbiH 2-polyprenyl-6-me 96.5 0.61 1.3E-05 44.0 20.4 38 91-131 120-158 (387)
40 PRK07190 hypothetical protein; 96.5 0.2 4.3E-06 48.9 17.5 41 88-131 121-161 (487)
41 PRK07333 2-octaprenyl-6-methox 96.4 0.52 1.1E-05 44.5 19.4 40 89-131 124-163 (403)
42 PRK08020 ubiF 2-octaprenyl-3-m 96.3 0.84 1.8E-05 42.9 19.8 49 80-131 117-165 (391)
43 PRK08773 2-octaprenyl-3-methyl 96.3 0.67 1.5E-05 43.6 19.2 40 89-131 126-165 (392)
44 PRK08013 oxidoreductase; Provi 96.3 0.9 1.9E-05 43.0 20.0 48 81-131 117-164 (400)
45 PRK05714 2-octaprenyl-3-methyl 96.2 0.88 1.9E-05 43.1 19.6 59 80-144 117-175 (405)
46 PRK07045 putative monooxygenas 96.1 0.93 2E-05 42.6 19.0 45 84-131 115-161 (388)
47 PRK10157 putative oxidoreducta 96.0 0.13 2.9E-06 49.3 12.9 53 76-131 108-160 (428)
48 PRK07364 2-octaprenyl-6-methox 96.0 1.2 2.6E-05 42.2 19.4 40 90-131 136-177 (415)
49 PRK08849 2-octaprenyl-3-methyl 96.0 1.4 3.1E-05 41.4 19.6 47 82-131 117-163 (384)
50 PF13738 Pyr_redox_3: Pyridine 95.9 0.012 2.5E-07 50.0 4.7 52 77-131 83-134 (203)
51 PRK07608 ubiquinone biosynthes 95.4 2.3 5E-05 39.8 19.3 47 80-131 116-163 (388)
52 PRK06617 2-octaprenyl-6-methox 95.4 2.4 5.2E-05 39.7 19.4 37 91-131 120-156 (374)
53 PRK06847 hypothetical protein; 94.9 1.8 3.8E-05 40.4 16.3 40 89-131 120-159 (375)
54 PTZ00363 rab-GDP dissociation 94.9 0.069 1.5E-06 51.4 6.7 58 72-130 225-285 (443)
55 PRK06834 hypothetical protein; 94.8 2.6 5.7E-05 41.1 17.6 41 88-131 112-152 (488)
56 TIGR01989 COQ6 Ubiquinone bios 94.3 5.1 0.00011 38.4 19.0 51 80-131 122-179 (437)
57 PRK06183 mhpA 3-(3-hydroxyphen 94.2 3.9 8.4E-05 40.4 17.5 48 82-131 120-170 (538)
58 PRK06184 hypothetical protein; 94.2 2.1 4.6E-05 41.8 15.4 47 81-131 115-164 (502)
59 COG2081 Predicted flavoprotein 94.0 0.11 2.3E-06 48.6 5.6 66 69-137 101-169 (408)
60 PRK06185 hypothetical protein; 94.0 5.7 0.00012 37.5 19.4 34 290-323 283-322 (407)
61 PRK10015 oxidoreductase; Provi 93.9 2.6 5.7E-05 40.4 15.2 35 290-324 294-336 (429)
62 PRK06996 hypothetical protein; 93.4 7.2 0.00016 36.8 19.0 47 81-131 121-170 (398)
63 PRK08244 hypothetical protein; 93.2 5 0.00011 39.2 16.1 52 78-131 102-155 (493)
64 TIGR02032 GG-red-SF geranylger 93.2 5.8 0.00013 35.2 16.1 54 75-131 90-144 (295)
65 PRK08132 FAD-dependent oxidore 92.9 7 0.00015 38.7 16.7 49 81-131 131-181 (547)
66 PRK06126 hypothetical protein; 92.7 5.6 0.00012 39.3 15.8 41 89-131 140-184 (545)
67 PF01266 DAO: FAD dependent ox 92.3 0.18 3.8E-06 46.3 4.4 49 78-130 146-198 (358)
68 PF03486 HI0933_like: HI0933-l 92.3 0.2 4.4E-06 47.7 4.8 66 70-138 100-169 (409)
69 PRK08294 phenol 2-monooxygenas 92.3 11 0.00023 38.3 17.3 41 91-131 158-206 (634)
70 PF13454 NAD_binding_9: FAD-NA 91.6 0.37 8E-06 39.3 5.1 33 95-130 120-152 (156)
71 COG0644 FixC Dehydrogenases (f 91.6 11 0.00023 35.7 15.6 60 69-131 87-148 (396)
72 TIGR03197 MnmC_Cterm tRNA U-34 90.8 0.36 7.8E-06 45.3 4.8 50 79-131 135-186 (381)
73 TIGR01790 carotene-cycl lycope 90.5 15 0.00033 34.3 17.4 35 289-323 260-300 (388)
74 TIGR02352 thiamin_ThiO glycine 90.5 11 0.00025 34.1 14.4 48 79-130 137-188 (337)
75 PRK11445 putative oxidoreducta 90.0 16 0.00035 33.8 16.6 34 290-323 263-302 (351)
76 PF01494 FAD_binding_3: FAD bi 89.7 0.82 1.8E-05 41.8 6.1 33 291-323 291-329 (356)
77 TIGR03219 salicylate_mono sali 89.6 0.72 1.6E-05 43.9 5.8 49 80-131 106-155 (414)
78 PLN02172 flavin-containing mon 89.5 0.37 8E-06 46.7 3.8 60 70-131 105-169 (461)
79 TIGR00031 UDP-GALP_mutase UDP- 89.2 16 0.00034 34.5 14.3 53 71-130 190-242 (377)
80 COG0579 Predicted dehydrogenas 89.1 0.78 1.7E-05 43.8 5.6 64 78-146 156-221 (429)
81 PF00743 FMO-like: Flavin-bind 89.0 0.36 7.9E-06 47.6 3.3 66 66-131 74-146 (531)
82 PLN02463 lycopene beta cyclase 87.3 29 0.00063 33.5 16.6 35 290-324 293-333 (447)
83 PRK13339 malate:quinone oxidor 87.3 1.3 2.9E-05 43.3 6.0 62 79-144 188-255 (497)
84 TIGR03862 flavo_PP4765 unchara 87.1 1.3 2.7E-05 41.7 5.5 64 71-139 78-145 (376)
85 PRK07236 hypothetical protein; 86.7 1.4 3E-05 41.5 5.7 52 77-131 98-150 (386)
86 COG3349 Uncharacterized conser 84.8 1.9 4.2E-05 41.6 5.5 39 286-324 423-464 (485)
87 PRK01747 mnmC bifunctional tRN 84.2 1.5 3.2E-05 44.6 4.8 49 80-131 409-459 (662)
88 PRK04965 NADH:flavorubredoxin 83.6 2.8 6.1E-05 39.3 6.2 43 86-131 193-235 (377)
89 PRK07538 hypothetical protein; 83.6 41 0.00088 31.8 15.5 32 290-321 296-333 (413)
90 PF00070 Pyr_redox: Pyridine n 82.9 1.8 4E-05 30.6 3.6 39 78-118 42-80 (80)
91 PRK06753 hypothetical protein; 82.6 3 6.5E-05 38.8 5.9 50 79-131 98-148 (373)
92 PRK07588 hypothetical protein; 81.7 2.8 6.1E-05 39.4 5.4 39 90-131 116-154 (391)
93 PRK11728 hydroxyglutarate oxid 80.6 3.3 7.1E-05 39.0 5.5 49 79-131 149-200 (393)
94 PTZ00383 malate:quinone oxidor 80.4 3.1 6.8E-05 40.7 5.3 38 91-131 232-269 (497)
95 TIGR01292 TRX_reduct thioredox 80.0 3.4 7.4E-05 36.9 5.2 40 88-131 69-108 (300)
96 PRK08163 salicylate hydroxylas 79.5 4.2 9.2E-05 38.2 5.9 48 81-131 115-162 (396)
97 TIGR03329 Phn_aa_oxid putative 79.3 3.4 7.5E-05 39.9 5.2 47 79-131 187-233 (460)
98 PRK11259 solA N-methyltryptoph 78.7 3.7 7.9E-05 38.2 5.1 39 89-131 162-200 (376)
99 COG2509 Uncharacterized FAD-de 77.7 4 8.7E-05 39.0 4.9 57 71-130 165-225 (486)
100 TIGR01377 soxA_mon sarcosine o 77.5 4.1 8.9E-05 38.0 5.0 42 86-131 155-196 (380)
101 TIGR03862 flavo_PP4765 unchara 76.6 3.3 7.2E-05 39.0 4.1 36 288-323 334-375 (376)
102 PRK09897 hypothetical protein; 76.6 4.6 9.9E-05 39.9 5.2 41 91-133 124-164 (534)
103 PF13450 NAD_binding_8: NAD(P) 75.8 2.4 5.2E-05 29.2 2.2 24 14-37 43-68 (68)
104 TIGR00275 flavoprotein, HI0933 75.5 5.6 0.00012 37.8 5.4 54 75-132 101-157 (400)
105 PF06039 Mqo: Malate:quinone o 75.3 5.4 0.00012 38.4 5.1 51 80-131 186-240 (488)
106 PRK12409 D-amino acid dehydrog 74.4 6 0.00013 37.4 5.4 48 80-131 202-254 (410)
107 PRK05868 hypothetical protein; 74.3 7.6 0.00017 36.4 6.0 39 90-131 118-156 (372)
108 TIGR03364 HpnW_proposed FAD de 73.9 6 0.00013 36.7 5.2 45 79-131 149-193 (365)
109 PRK05257 malate:quinone oxidor 73.8 6.4 0.00014 38.5 5.5 63 79-145 187-255 (494)
110 PRK00711 D-amino acid dehydrog 72.7 7.3 0.00016 36.8 5.5 39 89-131 214-253 (416)
111 PRK06116 glutathione reductase 71.3 8 0.00017 37.2 5.5 41 88-131 220-261 (450)
112 PLN02507 glutathione reductase 71.3 7.5 0.00016 38.1 5.3 43 86-131 254-296 (499)
113 PLN02927 antheraxanthin epoxid 71.2 8.1 0.00018 39.3 5.6 50 79-131 194-244 (668)
114 PRK15317 alkyl hydroperoxide r 70.9 8 0.00017 38.1 5.4 41 88-131 278-318 (517)
115 PRK06416 dihydrolipoamide dehy 70.6 6.5 0.00014 38.0 4.6 46 83-131 220-268 (462)
116 PRK07845 flavoprotein disulfid 70.1 8.1 0.00018 37.4 5.2 46 83-131 225-270 (466)
117 PRK06475 salicylate hydroxylas 69.2 11 0.00025 35.4 5.9 49 81-131 113-163 (400)
118 TIGR01320 mal_quin_oxido malat 68.6 11 0.00025 36.7 5.9 50 80-131 179-236 (483)
119 TIGR03378 glycerol3P_GlpB glyc 67.3 12 0.00027 35.7 5.6 48 79-130 267-317 (419)
120 TIGR03140 AhpF alkyl hydropero 67.1 11 0.00024 37.1 5.5 40 89-131 280-319 (515)
121 PRK05249 soluble pyridine nucl 66.1 11 0.00024 36.3 5.2 40 89-131 229-268 (461)
122 COG2072 TrkA Predicted flavopr 65.5 8.7 0.00019 37.0 4.3 42 91-132 99-141 (443)
123 TIGR01424 gluta_reduc_2 glutat 65.4 12 0.00027 35.9 5.4 41 88-131 219-259 (446)
124 PRK09754 phenylpropionate diox 65.4 15 0.00032 34.7 5.9 41 87-131 197-237 (396)
125 PF13434 K_oxygenase: L-lysine 64.7 7.8 0.00017 36.0 3.7 52 79-131 98-155 (341)
126 TIGR02028 ChlP geranylgeranyl 64.6 11 0.00023 35.8 4.7 34 290-323 269-308 (398)
127 TIGR01350 lipoamide_DH dihydro 64.0 12 0.00025 36.2 4.9 41 88-131 223-265 (461)
128 TIGR02374 nitri_red_nirB nitri 64.0 16 0.00034 38.1 6.1 58 79-139 185-242 (785)
129 PRK13984 putative oxidoreducta 63.0 9.5 0.00021 38.3 4.2 37 288-324 566-602 (604)
130 PRK12809 putative oxidoreducta 62.5 11 0.00023 38.3 4.5 38 288-325 598-636 (639)
131 PRK12769 putative oxidoreducta 61.3 12 0.00027 37.9 4.7 38 288-325 615-653 (654)
132 PRK08010 pyridine nucleotide-d 60.0 17 0.00037 34.9 5.2 41 87-131 210-250 (441)
133 PRK14989 nitrite reductase sub 59.8 22 0.00049 37.3 6.4 60 79-139 190-249 (847)
134 TIGR02485 CobZ_N-term precorri 58.9 24 0.00052 33.7 6.1 57 75-134 119-182 (432)
135 PRK12810 gltD glutamate syntha 58.9 15 0.00032 35.7 4.6 37 288-324 428-465 (471)
136 TIGR01316 gltA glutamate synth 58.6 14 0.00031 35.5 4.5 36 288-323 413-449 (449)
137 PF13434 K_oxygenase: L-lysine 58.6 13 0.00028 34.5 4.0 39 90-130 293-336 (341)
138 PLN00093 geranylgeranyl diphos 58.4 14 0.0003 35.7 4.4 34 290-323 308-347 (450)
139 TIGR03385 CoA_CoA_reduc CoA-di 58.4 18 0.00039 34.4 5.1 46 83-131 51-99 (427)
140 TIGR02374 nitri_red_nirB nitri 58.3 14 0.00031 38.4 4.7 40 87-131 65-104 (785)
141 TIGR03169 Nterm_to_SelD pyridi 57.3 16 0.00035 33.8 4.5 47 78-131 193-239 (364)
142 COG2081 Predicted flavoprotein 56.8 11 0.00024 35.5 3.1 35 289-323 367-407 (408)
143 PLN02697 lycopene epsilon cycl 56.2 2.2E+02 0.0047 28.3 16.9 73 241-324 332-411 (529)
144 PRK14727 putative mercuric red 56.2 26 0.00056 34.1 5.8 41 87-131 239-279 (479)
145 TIGR02023 BchP-ChlP geranylger 56.1 18 0.0004 33.9 4.7 34 290-323 263-302 (388)
146 PRK14694 putative mercuric red 55.2 27 0.00059 33.8 5.8 42 86-131 228-269 (468)
147 PRK04176 ribulose-1,5-biphosph 55.2 18 0.00038 32.1 4.2 36 290-325 213-256 (257)
148 PRK12831 putative oxidoreducta 54.9 17 0.00037 35.3 4.3 37 288-324 424-461 (464)
149 TIGR00292 thiazole biosynthesi 54.4 18 0.0004 32.0 4.1 35 290-324 212-254 (254)
150 PRK13512 coenzyme A disulfide 53.7 25 0.00053 33.8 5.2 47 83-131 65-113 (438)
151 PRK12770 putative glutamate sy 53.7 22 0.00047 32.9 4.7 36 289-324 314-350 (352)
152 PRK07846 mycothione reductase; 53.4 32 0.00069 33.2 5.9 39 90-131 220-258 (451)
153 TIGR03452 mycothione_red mycot 52.6 36 0.00077 32.8 6.1 39 90-131 223-261 (452)
154 TIGR01318 gltD_gamma_fam gluta 52.5 24 0.00052 34.2 4.9 36 289-324 430-466 (467)
155 TIGR01373 soxB sarcosine oxida 51.7 34 0.00073 32.3 5.8 41 88-131 195-236 (407)
156 COG1249 Lpd Pyruvate/2-oxoglut 51.4 33 0.00072 33.2 5.6 46 83-131 222-268 (454)
157 PRK09564 coenzyme A disulfide 51.3 30 0.00066 33.0 5.4 46 82-131 197-242 (444)
158 TIGR03169 Nterm_to_SelD pyridi 51.0 29 0.00063 32.1 5.1 35 289-323 270-310 (364)
159 PRK07818 dihydrolipoamide dehy 50.8 27 0.00058 33.8 5.0 43 87-131 224-269 (466)
160 KOG1399 Flavin-containing mono 49.6 19 0.00042 34.7 3.7 57 73-131 87-149 (448)
161 PTZ00367 squalene epoxidase; P 49.6 2.8E+02 0.0061 27.7 18.5 32 290-321 336-373 (567)
162 PRK11749 dihydropyrimidine deh 49.5 22 0.00047 34.4 4.1 36 289-324 416-452 (457)
163 PRK04965 NADH:flavorubredoxin 49.4 26 0.00057 32.7 4.6 42 84-131 66-107 (377)
164 PTZ00052 thioredoxin reductase 49.3 39 0.00084 33.1 5.9 43 87-132 233-275 (499)
165 PRK07251 pyridine nucleotide-d 48.9 30 0.00066 33.1 5.0 42 86-131 208-249 (438)
166 PRK06912 acoL dihydrolipoamide 48.8 31 0.00067 33.3 5.0 42 87-131 222-264 (458)
167 PRK12779 putative bifunctional 48.6 23 0.0005 37.7 4.4 37 288-324 590-627 (944)
168 PRK06175 L-aspartate oxidase; 48.4 33 0.00072 32.9 5.2 51 80-133 133-187 (433)
169 PTZ00318 NADH dehydrogenase-li 48.4 38 0.00082 32.3 5.6 42 82-130 234-275 (424)
170 PRK12266 glpD glycerol-3-phosp 47.5 28 0.0006 34.2 4.6 43 87-131 166-212 (508)
171 PRK13748 putative mercuric red 47.4 34 0.00074 33.9 5.2 41 87-131 321-361 (561)
172 TIGR03385 CoA_CoA_reduc CoA-di 47.3 41 0.00088 32.0 5.6 44 83-131 186-229 (427)
173 TIGR01317 GOGAT_sm_gam glutama 46.5 34 0.00074 33.4 5.0 37 288-324 442-479 (485)
174 TIGR01292 TRX_reduct thioredox 46.5 23 0.00051 31.4 3.6 35 289-323 264-300 (300)
175 TIGR02053 MerA mercuric reduct 46.2 35 0.00075 32.9 5.0 49 80-131 211-262 (463)
176 PRK12775 putative trifunctiona 45.6 31 0.00067 37.1 4.8 37 288-324 718-755 (1006)
177 TIGR01423 trypano_reduc trypan 45.4 51 0.0011 32.2 6.0 46 88-135 243-288 (486)
178 TIGR01421 gluta_reduc_1 glutat 45.4 49 0.0011 31.9 5.9 43 87-131 218-261 (450)
179 PRK09754 phenylpropionate diox 45.1 31 0.00067 32.5 4.3 39 89-132 71-109 (396)
180 PRK06327 dihydrolipoamide dehy 44.0 39 0.00084 32.8 4.9 41 89-131 237-280 (475)
181 COG1252 Ndh NADH dehydrogenase 43.5 38 0.00083 32.2 4.6 50 76-131 209-258 (405)
182 PRK12778 putative bifunctional 43.4 30 0.00065 35.8 4.2 37 288-324 713-750 (752)
183 PLN02661 Putative thiazole syn 43.2 32 0.00069 32.1 3.9 35 290-324 286-328 (357)
184 PF05834 Lycopene_cycl: Lycope 43.0 51 0.0011 30.8 5.5 37 91-130 101-137 (374)
185 PRK06370 mercuric reductase; V 43.0 45 0.00097 32.2 5.2 46 84-131 220-267 (463)
186 COG1635 THI4 Ribulose 1,5-bisp 42.4 32 0.0007 29.9 3.5 36 289-324 217-260 (262)
187 PRK09564 coenzyme A disulfide 42.0 44 0.00095 31.9 4.9 41 89-131 69-111 (444)
188 PF03486 HI0933_like: HI0933-l 42.0 19 0.0004 34.4 2.3 30 288-317 373-408 (409)
189 PRK13369 glycerol-3-phosphate 41.6 30 0.00065 33.9 3.8 43 87-131 166-211 (502)
190 TIGR01438 TGR thioredoxin and 40.7 57 0.0012 31.8 5.5 44 86-132 230-276 (484)
191 PRK12771 putative glutamate sy 40.5 33 0.00071 34.2 3.9 37 288-324 407-444 (564)
192 TIGR01372 soxA sarcosine oxida 39.9 40 0.00087 36.2 4.6 35 290-324 438-472 (985)
193 TIGR01789 lycopene_cycl lycope 39.1 54 0.0012 30.7 4.9 85 31-131 50-134 (370)
194 PRK12814 putative NADPH-depend 39.0 44 0.00095 34.0 4.5 37 288-324 464-501 (652)
195 PF05678 VQ: VQ motif; InterP 38.1 26 0.00057 20.1 1.6 20 20-39 5-24 (31)
196 PRK14989 nitrite reductase sub 38.1 48 0.001 34.9 4.8 39 88-131 71-109 (847)
197 TIGR01813 flavo_cyto_c flavocy 37.8 57 0.0012 31.2 5.0 53 80-133 131-190 (439)
198 PRK06115 dihydrolipoamide dehy 37.8 59 0.0013 31.5 5.1 41 88-131 227-272 (466)
199 TIGR00275 flavoprotein, HI0933 36.9 26 0.00056 33.2 2.4 28 289-316 366-399 (400)
200 PRK06134 putative FAD-binding 34.8 69 0.0015 32.1 5.1 46 88-135 229-278 (581)
201 PF00732 GMC_oxred_N: GMC oxid 34.2 51 0.0011 29.4 3.8 56 89-144 206-267 (296)
202 PF15320 RAM: mRNA cap methyla 34.2 23 0.00051 25.4 1.2 28 22-49 10-38 (81)
203 COG0665 DadA Glycine/D-amino a 33.3 77 0.0017 29.3 5.0 37 91-131 172-208 (387)
204 PRK10262 thioredoxin reductase 32.2 30 0.00065 31.4 2.0 39 287-325 276-316 (321)
205 PTZ00058 glutathione reductase 31.9 1.2E+02 0.0026 30.3 6.2 44 87-131 289-332 (561)
206 PRK06481 fumarate reductase fl 31.3 88 0.0019 30.7 5.2 44 89-134 203-250 (506)
207 PRK13977 myosin-cross-reactive 31.3 1.2E+02 0.0025 30.5 5.9 32 290-321 486-522 (576)
208 PRK05976 dihydrolipoamide dehy 31.1 94 0.002 30.1 5.3 44 87-131 232-277 (472)
209 PRK12845 3-ketosteroid-delta-1 31.0 88 0.0019 31.2 5.2 60 75-137 214-280 (564)
210 PRK12842 putative succinate de 30.5 90 0.002 31.2 5.2 35 289-323 523-567 (574)
211 PRK13512 coenzyme A disulfide 30.5 1.1E+02 0.0023 29.4 5.5 38 87-131 200-237 (438)
212 PRK09853 putative selenate red 30.2 73 0.0016 34.2 4.5 37 288-324 805-842 (1019)
213 PRK08274 tricarballylate dehyd 30.0 1.1E+02 0.0024 29.4 5.7 57 76-134 128-191 (466)
214 KOG1346 Programmed cell death 29.4 34 0.00074 32.7 1.8 52 77-131 386-445 (659)
215 TIGR03315 Se_ygfK putative sel 29.2 70 0.0015 34.4 4.2 34 289-322 804-838 (1012)
216 KOG2820 FAD-dependent oxidored 29.2 1.1E+02 0.0023 28.6 4.8 45 85-130 162-207 (399)
217 TIGR00551 nadB L-aspartate oxi 29.0 99 0.0021 30.1 5.1 35 288-322 344-388 (488)
218 KOG1336 Monodehydroascorbate/f 28.8 85 0.0018 30.4 4.3 60 73-133 252-311 (478)
219 TIGR01421 gluta_reduc_1 glutat 28.6 87 0.0019 30.1 4.6 34 288-321 293-327 (450)
220 PRK10262 thioredoxin reductase 27.9 1E+02 0.0022 28.0 4.7 38 89-131 76-113 (321)
221 PRK07512 L-aspartate oxidase; 27.8 70 0.0015 31.5 3.8 53 80-134 141-196 (513)
222 PRK05329 anaerobic glycerol-3- 27.6 1.1E+02 0.0023 29.4 4.9 52 76-130 257-313 (422)
223 PRK08243 4-hydroxybenzoate 3-m 27.5 93 0.002 29.1 4.5 33 290-322 278-316 (392)
224 TIGR03140 AhpF alkyl hydropero 27.1 32 0.0007 33.8 1.4 37 289-325 476-514 (515)
225 PRK06467 dihydrolipoamide dehy 27.1 1.2E+02 0.0026 29.4 5.3 39 91-131 229-270 (471)
226 TIGR03143 AhpF_homolog putativ 25.2 81 0.0017 31.4 3.8 37 288-324 271-309 (555)
227 COG1251 NirB NAD(P)H-nitrite r 25.2 80 0.0017 32.4 3.6 43 84-131 67-109 (793)
228 TIGR01810 betA choline dehydro 25.0 1.6E+02 0.0034 29.1 5.7 57 88-146 206-266 (532)
229 PLN02546 glutathione reductase 24.3 1.3E+02 0.0029 30.0 5.0 43 87-131 304-346 (558)
230 PRK06116 glutathione reductase 24.3 1.1E+02 0.0024 29.3 4.5 34 288-321 293-327 (450)
231 COG0446 HcaD Uncharacterized N 24.3 1.3E+02 0.0029 27.8 4.9 52 77-131 179-233 (415)
232 PF00890 FAD_binding_2: FAD bi 24.2 98 0.0021 29.2 4.0 58 77-136 139-204 (417)
233 KOG1336 Monodehydroascorbate/f 22.4 1.1E+02 0.0024 29.6 3.9 40 87-131 138-177 (478)
234 PTZ00318 NADH dehydrogenase-li 22.3 1.4E+02 0.0031 28.4 4.7 35 289-323 307-347 (424)
235 TIGR03377 glycerol3P_GlpA glyc 22.0 1.7E+02 0.0036 28.8 5.3 42 88-131 140-186 (516)
236 PRK12837 3-ketosteroid-delta-1 21.9 1.6E+02 0.0035 28.9 5.1 52 82-136 180-236 (513)
237 COG0492 TrxB Thioredoxin reduc 21.8 2E+02 0.0043 26.2 5.3 38 288-325 263-302 (305)
238 PRK05335 tRNA (uracil-5-)-meth 21.2 1.5E+02 0.0033 28.6 4.5 36 288-323 328-363 (436)
239 PRK11101 glpA sn-glycerol-3-ph 21.2 1.2E+02 0.0026 30.1 4.0 41 88-130 161-206 (546)
240 PRK07121 hypothetical protein; 21.0 1.8E+02 0.0039 28.3 5.2 34 289-322 448-490 (492)
241 PRK08243 4-hydroxybenzoate 3-m 20.7 1.9E+02 0.0042 27.0 5.2 42 89-131 116-159 (392)
242 TIGR02462 pyranose_ox pyranose 20.6 1.8E+02 0.0038 29.0 5.0 55 90-144 228-288 (544)
243 PF01134 GIDA: Glucose inhibit 20.1 1.7E+02 0.0037 27.8 4.5 49 79-130 99-147 (392)
244 PRK09231 fumarate reductase fl 20.0 2.1E+02 0.0046 28.7 5.6 35 288-322 369-413 (582)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=6.9e-65 Score=432.51 Aligned_cols=290 Identities=29% Similarity=0.508 Sum_probs=252.1
Q ss_pred CcccccccCCCCceecccCCCceeeCChhHHHHHHHHHhCCccccccCceeeeeccCcceeecccCCCCceEEeCCCchH
Q 020469 1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNS 80 (326)
Q Consensus 1 matrr~~~~~~~~~~~DhGAq~ft~~~~~f~~~~~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~Gm~~ 80 (326)
|||||. +.| .||||||||+++++.|.++|+.|.++|+|+.|...++.+.+.+ .. +...+..|++.+||++
T Consensus 40 lAtRRl--~~g---~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~-~~----~~~d~~pyvg~pgmsa 109 (331)
T COG3380 40 LATRRL--DGG---RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDG-SP----PRGDEDPYVGEPGMSA 109 (331)
T ss_pred hheecc--CCc---cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCC-CC----CCCCCCccccCcchHH
Confidence 799998 555 4999999999999999999999999999999998888876432 10 2222233999999999
Q ss_pred HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcCCCCCCCCCcChHHHHH
Q 020469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVK 160 (326)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~~~~~~~~~~~~~~ 160 (326)
|+|+|++.+. |+++++|+.|.+ .++.|+|++++|....+||.|||| +|+||++.||... +..+..+++..
T Consensus 110 lak~LAtdL~--V~~~~rVt~v~~--~~~~W~l~~~~g~~~~~~d~vvla---~PAPQ~~~LLt~~---~~~~p~~l~~~ 179 (331)
T COG3380 110 LAKFLATDLT--VVLETRVTEVAR--TDNDWTLHTDDGTRHTQFDDVVLA---IPAPQTATLLTTD---ADDLPAALRAA 179 (331)
T ss_pred HHHHHhccch--hhhhhhhhhhee--cCCeeEEEecCCCcccccceEEEe---cCCCcchhhcCcc---cccchHHHHHh
Confidence 9999999776 899999999998 688999999888766799999999 9999999998521 23455679999
Q ss_pred hccCCCcceeeeeeecCCCCCCCCCCceeecCCCceeeeeecCCCCCCCCCCceEEEEeCHHHHHHhHhhcCCCCCchhh
Q 020469 161 LEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEAT 240 (326)
Q Consensus 161 l~~~~~~~~~~v~l~~~~~~~~~p~~g~~~~~~~~l~w~~~~sskpgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (326)
+..|.|.|||++++.|++++. .|+.|.++ ++++|.|+++|.+||||.+.++.||+|++++||+.|++. +
T Consensus 180 ~a~V~y~Pc~s~~lg~~q~l~-~P~~G~~v-dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~---------~ 248 (331)
T COG3380 180 LADVVYAPCWSAVLGYPQPLD-RPWPGNFV-DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDH---------P 248 (331)
T ss_pred hccceehhHHHHHhcCCccCC-CCCCCccc-CCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcC---------C
Confidence 999999999999999999986 69999666 556999999999999999888899999999999999987 5
Q ss_pred HHHHHHHHHHHHHhcCC-CCCCcceeeeeecCCCCCCCCCCCCCCeee-ccCCCeEEeeCCCCCCChhHHHHHHHHHHHH
Q 020469 241 LKKVAEEMFQEFQGTGL-SIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILSGLDAASK 318 (326)
Q Consensus 241 ~~~v~~~l~~~~~~~~~-~~~~p~~~~~~rW~~A~p~~~~~~~~~~~~-~~~~~l~~aGD~~~g~~vegA~~SG~~aA~~ 318 (326)
.++++..|..+++++.+ .++.|.++.+||||||+|+.... .++++ +...+|++|||||.|+++|||++||+++|++
T Consensus 249 ~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~--~~~L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~ 326 (331)
T COG3380 249 AEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVA--GPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADH 326 (331)
T ss_pred HHHHHHHHHHhhhhccCCCCCcchHHHhhcccccccccccc--CCccccCCCCceeeecccccCcchhHHHhccHHHHHH
Confidence 78888888888887643 67899999999999999998876 57777 8899999999999999999999999999999
Q ss_pred HHhhh
Q 020469 319 LTEIL 323 (326)
Q Consensus 319 l~~~l 323 (326)
|++.|
T Consensus 327 i~~~L 331 (331)
T COG3380 327 ILNGL 331 (331)
T ss_pred HHhcC
Confidence 98765
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.94 E-value=2.1e-26 Score=222.00 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=177.1
Q ss_pred EEeCCCchHHHHHHhcCCC-CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcCCCCCCC
Q 020469 72 YVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (326)
Q Consensus 72 yv~~~Gm~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~~~~ 150 (326)
+...+||++|++.|++.++ .+|+++++|++|++ ++++|.|.+++|+.+ .||+||+| +|++++..++.
T Consensus 218 ~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~v~~~~g~~~-~ad~VI~t---~P~~~~~~ll~------ 285 (462)
T TIGR00562 218 QTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSH--RGSNYTLELDNGVTV-ETDSVVVT---APHKAAAGLLS------ 285 (462)
T ss_pred EecchhHHHHHHHHHHHhccCeEEcCCeEEEEEe--cCCcEEEEECCCcEE-EcCEEEEC---CCHHHHHHHhc------
Confidence 4568999999999999886 68999999999998 678899988887544 79999999 89999988874
Q ss_pred CCcChHHHHHhccCCCcceeeeeeecCCCCCCCCCCc--eeecCC---CceeeeeecCCCCCCCCC-CceEEEEeCHHHH
Q 020469 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKG--FSFQDS---EVLSWAHCDSSKPGRSAN-SERWVLHSTADYA 224 (326)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~~g--~~~~~~---~~l~w~~~~sskpgr~~~-~~~~~~~~~~~~~ 224 (326)
.+.+...+.+.++.|.+|+++++.|+++.+..+..+ ++++.. .++.|+..++.+|++.+. ...++++.+..++
T Consensus 286 -~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~ 364 (462)
T TIGR00562 286 -ELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATD 364 (462)
T ss_pred -ccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCC
Confidence 345677888999999999999999988754333334 444433 356777655555777653 3356666665554
Q ss_pred HHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCCCCCCC------CeeeccCCCeEEeeC
Q 020469 225 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLAICGD 298 (326)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~A~p~~~~~~~~------~~~~~~~~~l~~aGD 298 (326)
..+.+. +++++.+.+++++.++++....|.+..++||++|+|++.+++.. .++....++|++|||
T Consensus 365 ~~~~~~---------~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~ 435 (462)
T TIGR00562 365 ESIVDL---------SENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGN 435 (462)
T ss_pred ccccCC---------CHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEecc
Confidence 444433 46788888888888765433358999999999999999887521 112233569999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhc
Q 020469 299 FCVSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 299 ~~~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
|+.|.+||+|+.||+++|++|++.|-
T Consensus 436 ~~~g~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 436 SFEGVGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988764
No 3
>PLN02576 protoporphyrinogen oxidase
Probab=99.93 E-value=1.2e-24 Score=211.66 Aligned_cols=234 Identities=16% Similarity=0.157 Sum_probs=172.2
Q ss_pred ceEEeCCCchHHHHHHhcCCC-CeeEcceeEeeEEeecCCCC-eEEEcc--CCCccccccEEEeccCCCCCcchhhhcCC
Q 020469 70 KKYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNL-WSVSGL--DGQSLGQFNGVVASDKNVVSPRFRDVTGR 145 (326)
Q Consensus 70 ~~yv~~~Gm~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~-w~l~~~--~g~~~~~~d~VVla~~~~pap~~~~ll~~ 145 (326)
..|...+||++|+++|++.++ .+|+++++|++|++ .+++ |.|+.. +|+....||+||+| +|++++..++.
T Consensus 230 ~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~--~~~~~~~v~~~~~~g~~~~~ad~VI~a---~P~~~l~~ll~- 303 (496)
T PLN02576 230 TVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSK--NDDGGYSLTYDTPEGKVNVTAKAVVMT---APLYVVSEMLR- 303 (496)
T ss_pred eeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEE--CCCCcEEEEEecCCCceeEEeCEEEEC---CCHHHHHHHhc-
Confidence 357789999999999999887 67999999999997 5555 887654 44322489999999 89999988875
Q ss_pred CCCCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCC------CCCcee--ecCC---CceeeeeecCCCCCCCCCC-c
Q 020469 146 PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI------PVKGFS--FQDS---EVLSWAHCDSSKPGRSANS-E 213 (326)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~------p~~g~~--~~~~---~~l~w~~~~sskpgr~~~~-~ 213 (326)
...+++.+.+.+++|.+|++|++.|+++.+.. +..++. +++. ..+.|+...+.+|++.+.. .
T Consensus 304 ------~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~ 377 (496)
T PLN02576 304 ------PKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRV 377 (496)
T ss_pred ------ccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCE
Confidence 24567888899999999999999999875432 334543 3221 2456666666678776532 2
Q ss_pred eEEEEeCHHHHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC--CCCcceeeeeecCCCCCCCCCCCCCCe-----e
Q 020469 214 RWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSAFPAASIAKEERC-----L 286 (326)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~--~~~p~~~~~~rW~~A~p~~~~~~~~~~-----~ 286 (326)
.++++........+.+. +++++.+.+++++.++.+. .+.|....+++|++|+|++..++.... .
T Consensus 378 ~l~~~~~~~~~~~~~~~---------s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~ 448 (496)
T PLN02576 378 LLLNYIGGSRNTGIASA---------SEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKM 448 (496)
T ss_pred EEEEEECCCCCcccccC---------CHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHH
Confidence 34455554444433333 4678888888888876442 236788889999999999988752110 1
Q ss_pred eccC--CCeEEeeCCCCCCChhHHHHHHHHHHHHHHhhhc
Q 020469 287 WDVK--RRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 287 ~~~~--~~l~~aGD~~~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
.+.. ++|++||||+.|.+||+|++||+++|++|++.+.
T Consensus 449 l~~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 449 EKDLGLPGLFLGGNYRGGVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred HHhcCCCCEEEeccccCCccHHHHHHHHHHHHHHHHHHHh
Confidence 1233 6999999999999999999999999999987654
No 4
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.91 E-value=3e-23 Score=200.15 Aligned_cols=229 Identities=13% Similarity=0.134 Sum_probs=167.4
Q ss_pred eEEeCCCchHHHHHHhcCCC-CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcCCCCCC
Q 020469 71 KYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (326)
Q Consensus 71 ~yv~~~Gm~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~~~ 149 (326)
.+...+||++|+++|++.++ .+|+++++|++|+. ++++|.|.+.+|+.+ .+|+||+| +|++++..++.
T Consensus 218 ~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~v~~~~g~~~-~ad~VI~a---~p~~~~~~ll~----- 286 (463)
T PRK12416 218 FVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSK--QGDRYEISFANHESI-QADYVVLA---APHDIAETLLQ----- 286 (463)
T ss_pred eEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEE--cCCEEEEEECCCCEE-EeCEEEEC---CCHHHHHhhcC-----
Confidence 34569999999999999885 47999999999998 667899988777654 79999999 88888877764
Q ss_pred CCCcChHHHHHhccCCCcceeeeeeecCCCCCCCCC--CceeecCCCce--eeeeecCCC-CCCCCCCceEEEEeCH---
Q 020469 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPV--KGFSFQDSEVL--SWAHCDSSK-PGRSANSERWVLHSTA--- 221 (326)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~--~g~~~~~~~~l--~w~~~~ssk-pgr~~~~~~~~~~~~~--- 221 (326)
.+.+.+.+.++.|.+++++++.|+.+.+..|. .|+++++.+.+ .-+.+.+++ |++.+.. .+++....
T Consensus 287 ----~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~-~~l~~~~~~~~ 361 (463)
T PRK12416 287 ----SNELNEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQ-KLLVRMFYKST 361 (463)
T ss_pred ----CcchhHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCC-eEEEEEEeCCC
Confidence 13455667888999999999999976543343 44555544322 223455555 4444322 34444322
Q ss_pred -HHHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCCCCCCC------CeeeccCCCeE
Q 020469 222 -DYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLA 294 (326)
Q Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~A~p~~~~~~~~------~~~~~~~~~l~ 294 (326)
...+...+. +++++.+.+++++.++.+....|.+..++||++++|++..++.. ..+.++.++|+
T Consensus 362 ~~~~~~~~~~---------~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~ 432 (463)
T PRK12416 362 NPVYETIKNY---------SEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIY 432 (463)
T ss_pred CCCchhhhcC---------CHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeE
Confidence 222222222 46788888888988765544679999999999999999877521 12334467999
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHHhhhc
Q 020469 295 ICGDFCVSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 295 ~aGD~~~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
+||+|+.|.+||+|+.||+++|++|++.+.
T Consensus 433 ~aG~~~~g~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 433 LAGASYYGVGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred EeccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999987764
No 5
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.90 E-value=2.9e-22 Score=192.46 Aligned_cols=228 Identities=18% Similarity=0.195 Sum_probs=168.3
Q ss_pred eEEeCCCchHHHHHHhcCCCC-eeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcCCCCCC
Q 020469 71 KYVGVPGMNSICKALCHQPGV-ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (326)
Q Consensus 71 ~yv~~~Gm~~l~~~La~~l~~-~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~~~ 149 (326)
.+...+||++|+++|++.++. +|+++++|.+|+. ++++|.|.+.+|+.+ .||+||+| +|++++..++.
T Consensus 213 ~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~~~v~~~~g~~~-~~d~vI~a---~p~~~~~~l~~----- 281 (451)
T PRK11883 213 FGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDK--SGDGYEIVLSNGGEI-EADAVIVA---VPHPVLPSLFV----- 281 (451)
T ss_pred eEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEE--cCCeEEEEECCCCEE-EcCEEEEC---CCHHHHHHhcc-----
Confidence 357799999999999998875 7999999999997 667899988888754 89999999 89998888753
Q ss_pred CCCcChHHHHHhccCCCcceeeeeeecCCCCCC-CCCCceeecC--CCceeeeeecCCC-CCCCCCCceEEEEeCHHHHH
Q 020469 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSFQD--SEVLSWAHCDSSK-PGRSANSERWVLHSTADYAR 225 (326)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~p~~g~~~~~--~~~l~w~~~~ssk-pgr~~~~~~~~~~~~~~~~~ 225 (326)
.+...+.++.++|.++.++++.|+++++. .+..|++++. ..++.++.+++.+ |+..+.+..++.+..+.+..
T Consensus 282 ----~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~ 357 (451)
T PRK11883 282 ----APPAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGD 357 (451)
T ss_pred ----ChhHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCC
Confidence 13456678889999999999999988522 2335665542 2245667677766 45544344556555554433
Q ss_pred HhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCCCCCCCC--eee---ccCCCeEEeeCCC
Q 020469 226 TVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER--CLW---DVKRRLAICGDFC 300 (326)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~A~p~~~~~~~~~--~~~---~~~~~l~~aGD~~ 300 (326)
..... .+++++.+.+++.+.++.+....|....++||++++|.+.+++... .+. ...++|++||||+
T Consensus 358 ~~~~~--------~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~ 429 (451)
T PRK11883 358 EAVVD--------ATDEELVAFVLADLSKVMGITGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASF 429 (451)
T ss_pred chhcc--------CCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECccc
Confidence 22221 1467888888888887644345688899999999999887764110 011 1135899999999
Q ss_pred CCCChhHHHHHHHHHHHHHHh
Q 020469 301 VSPNVEGAILSGLDAASKLTE 321 (326)
Q Consensus 301 ~g~~vegA~~SG~~aA~~l~~ 321 (326)
.|.+||+|++||+.+|++|+.
T Consensus 430 ~g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 430 EGVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CCccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 6
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.86 E-value=3.6e-20 Score=175.96 Aligned_cols=218 Identities=17% Similarity=0.201 Sum_probs=149.9
Q ss_pred EEeCCCchHHHHH-HhcCC---CCeeEcceeEeeEEeecCCCCeEEEc-cCCCccccccEEEeccCCCCCcchhhhcCCC
Q 020469 72 YVGVPGMNSICKA-LCHQP---GVESKFGVGVGRFEWLEDKNLWSVSG-LDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 146 (326)
Q Consensus 72 yv~~~Gm~~l~~~-La~~l---~~~i~~~~~V~~i~~~~~~~~w~l~~-~~g~~~~~~d~VVla~~~~pap~~~~ll~~~ 146 (326)
+...+||+++... |++.+ +.+|+++++|.+|.. ++++|.+.. .+|+.+ .||+||+| +|++++..++.
T Consensus 189 ~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~--~~~~~~~~~~~~g~~~-~~d~vi~a---~p~~~~~~ll~-- 260 (419)
T TIGR03467 189 LLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEA--NAGGIRALVLSGGETL-PADAVVLA---VPPRHAASLLP-- 260 (419)
T ss_pred eeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEE--cCCcceEEEecCCccc-cCCEEEEc---CCHHHHHHhCC--
Confidence 3446799886544 66543 678999999999998 556655432 355543 79999999 89999888753
Q ss_pred CCCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCCCCceeecCCCceeeeeecCCCCCCCCCCceEEEEeCHHHHHH
Q 020469 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYART 226 (326)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~~g~~~~~~~~l~w~~~~sskpgr~~~~~~~~~~~~~~~~~~ 226 (326)
. +...+.++.++|.+|+++++.|++++|. +...+.+.. .+..|+..++.+++.. ....++++. +..
T Consensus 261 ~-------~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~ 326 (419)
T TIGR03467 261 G-------EDLGALLTALGYSPITTVHLRLDRAVRL-PAPMVGLVG-GLAQWLFDRGQLAGEP-GYLAVVISA----ARD 326 (419)
T ss_pred C-------chHHHHHhhcCCcceEEEEEEeCCCcCC-CCCeeeecC-CceeEEEECCcCCCCC-CEEEEEEec----chh
Confidence 1 2455678889999999999999999852 333333322 4677887766665432 222233332 222
Q ss_pred hHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCC--CCcceeeeeecCCCCCCCCCCCC--CCeeeccCCCeEEeeCCCCC
Q 020469 227 VIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICGDFCVS 302 (326)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~--~~p~~~~~~rW~~A~p~~~~~~~--~~~~~~~~~~l~~aGD~~~g 302 (326)
+.+. +++++.+.+++.+.++.+.. ..|.+..+.+|.++.+...+++. .+.+.++.++|++||||+.+
T Consensus 327 ~~~~---------~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~ 397 (419)
T TIGR03467 327 LVDL---------PREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTAT 397 (419)
T ss_pred hccC---------CHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccC
Confidence 3222 46788888888888765432 34667777777776665544432 34445677899999999987
Q ss_pred C---ChhHHHHHHHHHHHHHH
Q 020469 303 P---NVEGAILSGLDAASKLT 320 (326)
Q Consensus 303 ~---~vegA~~SG~~aA~~l~ 320 (326)
+ +||||++||.++|++|+
T Consensus 398 ~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 398 GWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred CCcchHHHHHHHHHHHHHHHh
Confidence 4 89999999999999986
No 7
>PLN02268 probable polyamine oxidase
Probab=99.85 E-value=1.2e-19 Score=173.73 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=159.0
Q ss_pred EEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhh-cCCCCCCC
Q 020469 72 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TGRPPPLD 150 (326)
Q Consensus 72 yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~l-l~~~~~~~ 150 (326)
....+||++|+++|++.+ +|+++++|++|.+ .+++|.|++.+|+.+ .||+||+| +|++.+..+ +...+
T Consensus 194 ~~~~~G~~~l~~~l~~~~--~i~~~~~V~~i~~--~~~~v~v~~~~g~~~-~ad~VIva---~P~~~l~~~~i~f~p--- 262 (435)
T PLN02268 194 GLMVRGYDPVINTLAKGL--DIRLNHRVTKIVR--RYNGVKVTVEDGTTF-VADAAIIA---VPLGVLKANIIKFEP--- 262 (435)
T ss_pred eeecCCHHHHHHHHhccC--ceeCCCeeEEEEE--cCCcEEEEECCCcEE-EcCEEEEe---cCHHHHhcCcceecC---
Confidence 345669999999999866 4999999999998 677899988888654 79999999 788876542 33322
Q ss_pred CCcChHHHHHhccCCCcceeeeeeecCCCCCC-CCCCceeecCCCceeeeeecCCCCCCCCCCceEEEEeCHHHHHHhHh
Q 020469 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIA 229 (326)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~p~~g~~~~~~~~l~w~~~~sskpgr~~~~~~~~~~~~~~~~~~~~~ 229 (326)
.+++...+.++.+.|.++.++++.|++++|. .++.|...+......|....+..+| ...++.+....++.+..+
T Consensus 263 -~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g----~~~l~~~~~g~~a~~~~~ 337 (435)
T PLN02268 263 -ELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATG----HPVLVYMPAGRLARDIEK 337 (435)
T ss_pred -CCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCCC----CCEEEEEeccHHHHHHHh
Confidence 3556667888999999999999999999884 2334443332222333322222122 235667777777665544
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCcceeeeeecC--------CCCCCCCCCCC---CCeeeccCCCeEEeeC
Q 020469 230 QTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWG--------SAFPAASIAKE---ERCLWDVKRRLAICGD 298 (326)
Q Consensus 230 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~p~~~~~~rW~--------~A~p~~~~~~~---~~~~~~~~~~l~~aGD 298 (326)
. +++++.+.+++.+.++.+....|....+|+|. |+.+. ++.. ...+..+.++|+|||+
T Consensus 338 ~---------~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~--~g~~~~~~~~l~~p~~~l~FAGe 406 (435)
T PLN02268 338 L---------SDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDL--VGKPHDLYERLRAPVDNLFFAGE 406 (435)
T ss_pred C---------CHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCC--CCCCHHHHHHHhCCCCCeEEeec
Confidence 3 45677778888888766555578999999998 33321 2211 1123456778999999
Q ss_pred CCCC---CChhHHHHHHHHHHHHHHhhh
Q 020469 299 FCVS---PNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 299 ~~~g---~~vegA~~SG~~aA~~l~~~l 323 (326)
++.. ++||||++||+++|++|+..|
T Consensus 407 ~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 407 ATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 9754 689999999999999998764
No 8
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.84 E-value=1.8e-19 Score=180.18 Aligned_cols=228 Identities=15% Similarity=0.157 Sum_probs=159.1
Q ss_pred CceEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhh-hcCCCC
Q 020469 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRPP 147 (326)
Q Consensus 69 ~~~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~-ll~~~~ 147 (326)
...+...+||++|+++|++.++ |+++++|++|.+ .+++|.+. .+|+.+ .||+||+| +|.+.+.. .+.+.+
T Consensus 427 G~~~~v~GG~~~Li~aLa~~L~--I~ln~~V~~I~~--~~dgV~V~-~~G~~~-~AD~VIvT---vPl~vLk~~~I~F~P 497 (808)
T PLN02328 427 GDHCFIPGGNDTFVRELAKDLP--IFYERTVESIRY--GVDGVIVY-AGGQEF-HGDMVLCT---VPLGVLKKGSIEFYP 497 (808)
T ss_pred CeEEEECCcHHHHHHHHHhhCC--cccCCeeEEEEE--cCCeEEEE-eCCeEE-EcCEEEEC---CCHHHHhhcccccCC
Confidence 3477889999999999999886 999999999998 67788884 456554 89999999 78887653 222222
Q ss_pred CCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCC--CCceeecCC---CceeeeeecCCCCCCCCCCceEEEEeCHH
Q 020469 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDS---EVLSWAHCDSSKPGRSANSERWVLHSTAD 222 (326)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p--~~g~~~~~~---~~l~w~~~~sskpgr~~~~~~~~~~~~~~ 222 (326)
.+++...++++.+.|.++.++++.|++++|... ..|.+..+. +... +..+.+.. . +...++.+.+++
T Consensus 498 ----~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~-lf~s~s~~--~-G~~vLvafv~G~ 569 (808)
T PLN02328 498 ----ELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFF-LFYSYSSV--S-GGPLLIALVAGD 569 (808)
T ss_pred ----CCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEE-EEecCCCC--C-CCcEEEEEecCh
Confidence 356677888999999999999999999998532 234333221 1111 22232221 1 234677788888
Q ss_pred HHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCC----CCCCcceeeeeecC--------CCCCCCCCCCC---CCeee
Q 020469 223 YARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL----SIPLPIFRKAHRWG--------SAFPAASIAKE---ERCLW 287 (326)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~p~~~~~~rW~--------~A~p~~~~~~~---~~~~~ 287 (326)
++...... +++++.+.+++.+..+.+ ..+.|....+|+|. |+.+. .|.. ...+.
T Consensus 570 ~A~~~e~l---------sdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~--pG~~~~~~~~La 638 (808)
T PLN02328 570 AAVKFETL---------SPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVA--VGSSGDDYDILA 638 (808)
T ss_pred hhHHHhcC---------CHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCC--CCCchhHHHHHh
Confidence 87765443 345666777777776532 13578899999999 44433 1211 11233
Q ss_pred cc--CCCeEEeeCCCCC---CChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DV--KRRLAICGDFCVS---PNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~--~~~l~~aGD~~~g---~~vegA~~SG~~aA~~l~~~l~ 324 (326)
.+ .++|+|||+++.. ++||||++||+++|++|+..+.
T Consensus 639 ePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~ 680 (808)
T PLN02328 639 ESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVAR 680 (808)
T ss_pred ccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHh
Confidence 33 4699999999764 5899999999999999988654
No 9
>PLN02529 lysine-specific histone demethylase 1
Probab=99.83 E-value=2e-19 Score=178.97 Aligned_cols=232 Identities=16% Similarity=0.182 Sum_probs=159.2
Q ss_pred CceEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhh-cCCCC
Q 020469 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TGRPP 147 (326)
Q Consensus 69 ~~~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~l-l~~~~ 147 (326)
...+...+||++|+++|++.++ |+++++|++|.+ ++++|.|.+. ++.+ .||+||+| +|.+.+.+. +.+.|
T Consensus 347 G~~~~i~GG~~~Li~aLA~~L~--IrLnt~V~~I~~--~~dGVtV~t~-~~~~-~AD~VIVT---VPlgVLk~~~I~F~P 417 (738)
T PLN02529 347 GDHCFLAGGNWRLINALCEGVP--IFYGKTVDTIKY--GNDGVEVIAG-SQVF-QADMVLCT---VPLGVLKKRTIRFEP 417 (738)
T ss_pred CceEEECCcHHHHHHHHHhcCC--EEcCCceeEEEE--cCCeEEEEEC-CEEE-EcCEEEEC---CCHHHHHhccccCCC
Confidence 3567889999999999999776 999999999998 6778999764 3344 79999999 888877642 33333
Q ss_pred CCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCC--CCCceeecCC-Cceee-eeecCCCCCCCCCCceEEEEeCHHH
Q 020469 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDS-EVLSW-AHCDSSKPGRSANSERWVLHSTADY 223 (326)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~--p~~g~~~~~~-~~l~w-~~~~sskpgr~~~~~~~~~~~~~~~ 223 (326)
++++...++++.+.|.++.++++.|++++|.. +..|+...+. ..-.| +..+.+.+ .+...++.....++
T Consensus 418 ----pLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~---~ggpvLvafv~G~~ 490 (738)
T PLN02529 418 ----ELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTV---SGGPALVALVAGEA 490 (738)
T ss_pred ----CCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCC---CCCCEEEEEECchh
Confidence 35566678899999999999999999999852 2334433211 11112 22232221 12346777777777
Q ss_pred HHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCC----CCCCcceeeeeecC--------CCCCCCCC-CCCCCeeecc-
Q 020469 224 ARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL----SIPLPIFRKAHRWG--------SAFPAASI-AKEERCLWDV- 289 (326)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~p~~~~~~rW~--------~A~p~~~~-~~~~~~~~~~- 289 (326)
+...... +++++.+.+++.+..+.+ ..+.|....+++|. |+.+..+. +.....+..+
T Consensus 491 A~~le~l---------sdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv 561 (738)
T PLN02529 491 AQRFENT---------DPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESV 561 (738)
T ss_pred hHHHhcC---------CHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCC
Confidence 7654333 456677777777776532 23578889999999 55433111 1001122333
Q ss_pred CCCeEEeeCCCCC---CChhHHHHHHHHHHHHHHhhhcc
Q 020469 290 KRRLAICGDFCVS---PNVEGAILSGLDAASKLTEILSC 325 (326)
Q Consensus 290 ~~~l~~aGD~~~g---~~vegA~~SG~~aA~~l~~~l~~ 325 (326)
.++|+|||+++.. ++||||++||+++|++|+..+.+
T Consensus 562 ~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 562 SGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred CCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 5799999999764 58999999999999999987643
No 10
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.80 E-value=1.1e-18 Score=163.93 Aligned_cols=226 Identities=15% Similarity=0.226 Sum_probs=171.2
Q ss_pred eEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcCCCCCCC
Q 020469 71 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (326)
Q Consensus 71 ~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~~~~ 150 (326)
.+...+||++|+++|++.+..+|+++++|+.|.+ ++++|.+.+.+|+.+ .||.||+| +|+|.+..+++
T Consensus 207 ~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~--~~~~~~~~~~~g~~~-~~D~VI~t---~p~~~l~~ll~------ 274 (444)
T COG1232 207 FGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDK--KGAGKTIVDVGGEKI-TADGVIST---APLPELARLLG------ 274 (444)
T ss_pred ccccCccHHHHHHHHHHHhhhceeecceeeEEEE--cCCccEEEEcCCceE-EcceEEEc---CCHHHHHHHcC------
Confidence 4556899999999999999888999999999998 566677777777653 79999999 89999999986
Q ss_pred CCcChHHHHHhccCCCcceeeeeeecCCCCCC--CCCCceeecCCCc-eeeeeecCCC-CCCCCCCceE-EEEeCHHHHH
Q 020469 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDSEV-LSWAHCDSSK-PGRSANSERW-VLHSTADYAR 225 (326)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~--~p~~g~~~~~~~~-l~w~~~~ssk-pgr~~~~~~~-~~~~~~~~~~ 225 (326)
. ......+..+.|.+..+|.++|+.+... ....|+.+.++.+ +..+.++|.| |...+.+..+ .+.....+..
T Consensus 275 -~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~ 351 (444)
T COG1232 275 -D--EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDE 351 (444)
T ss_pred -C--cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCc
Confidence 1 3345567788899999999999986211 2345777877666 7778888888 6666533322 2322222111
Q ss_pred HhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCCCCCCC------CeeeccCCCeEEeeCC
Q 020469 226 TVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLAICGDF 299 (326)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~A~p~~~~~~~~------~~~~~~~~~l~~aGD~ 299 (326)
.... ..++++.+..++++.+++.....|.+..+.||+++.|++..|+.. ..+....++|.+.|-|
T Consensus 352 ~~~~---------~~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~ 422 (444)
T COG1232 352 SVST---------MSDEELVAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRY 422 (444)
T ss_pred chhc---------cCHHHHHHHHHHHHHHHcCcCcchhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccC
Confidence 1111 146888899999999987777788899999999999999998631 1122223899999999
Q ss_pred CCCCChhHHHHHHHHHHHHHH
Q 020469 300 CVSPNVEGAILSGLDAASKLT 320 (326)
Q Consensus 300 ~~g~~vegA~~SG~~aA~~l~ 320 (326)
+.|.++.+|+.+|..+|++|+
T Consensus 423 ~~g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 423 GEGVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred CCCCCchHHHHHHHHHHHHhh
Confidence 999999999999999999886
No 11
>PLN03000 amine oxidase
Probab=99.77 E-value=1.8e-17 Score=165.89 Aligned_cols=232 Identities=13% Similarity=0.144 Sum_probs=157.4
Q ss_pred CceEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhh-hcCCCC
Q 020469 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRPP 147 (326)
Q Consensus 69 ~~~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~-ll~~~~ 147 (326)
...|..++||++|+++|++.++ |+++++|++|++ .+++|.|++.++ .+ .||+||+| +|+..+.+ .+.+.|
T Consensus 371 G~~~~v~GG~~~LieaLa~~L~--I~Ln~~Vt~I~~--~~dgV~V~~~~~-~~-~AD~VIvT---VPlgVLk~~~I~F~P 441 (881)
T PLN03000 371 GDHCFLPGGNGRLVQALAENVP--ILYEKTVQTIRY--GSNGVKVIAGNQ-VY-EGDMVLCT---VPLGVLKNGSIKFVP 441 (881)
T ss_pred CceEEeCCCHHHHHHHHHhhCC--cccCCcEEEEEE--CCCeEEEEECCc-EE-EeceEEEc---CCHHHHhhCceeeCC
Confidence 3567888999999999999886 999999999998 678899986544 34 79999999 77776652 222222
Q ss_pred CCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCC--CCceeecCCC--ceeeeeecCCCCCCCCCCceEEEEeCHHH
Q 020469 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSE--VLSWAHCDSSKPGRSANSERWVLHSTADY 223 (326)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p--~~g~~~~~~~--~l~w~~~~sskpgr~~~~~~~~~~~~~~~ 223 (326)
++++...++++.+.|....+|.+.|++++|..+ ..|+++.+.. ...++..+.++.. +...++.....+.
T Consensus 442 ----pLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~---G~pVLvafv~Gd~ 514 (881)
T PLN03000 442 ----ELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVA---GGPLLIALVAGEA 514 (881)
T ss_pred ----CCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCC---CCcEEEEEecCch
Confidence 456667788999999999999999999998633 3444443211 1222333433322 1235555555555
Q ss_pred HHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCC----CCCCcceeeeeecCCC---CC---CCCCCCCC---Ceeecc-
Q 020469 224 ARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL----SIPLPIFRKAHRWGSA---FP---AASIAKEE---RCLWDV- 289 (326)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~p~~~~~~rW~~A---~p---~~~~~~~~---~~~~~~- 289 (326)
+...-.. +++++.+.+++.+..+.+ ..+.|....+++|..- .- ...++... ..+..+
T Consensus 515 A~~le~l---------SdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv 585 (881)
T PLN03000 515 AHKFETM---------PPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESV 585 (881)
T ss_pred hHHhhcC---------CHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcC
Confidence 5433222 456677777777776543 2357888999999832 11 11122100 112233
Q ss_pred -CCCeEEeeCCCCC---CChhHHHHHHHHHHHHHHhhhcc
Q 020469 290 -KRRLAICGDFCVS---PNVEGAILSGLDAASKLTEILSC 325 (326)
Q Consensus 290 -~~~l~~aGD~~~g---~~vegA~~SG~~aA~~l~~~l~~ 325 (326)
.++|+|||+.+.. ++|+||++||+++|++|+..+.+
T Consensus 586 ~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 586 GDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred CCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhh
Confidence 4699999987653 79999999999999999988765
No 12
>PRK07233 hypothetical protein; Provisional
Probab=99.77 E-value=1.8e-17 Score=158.39 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=153.9
Q ss_pred eEEeCCCchHHHHHHhcCC---CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcCCCC
Q 020469 71 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 147 (326)
Q Consensus 71 ~yv~~~Gm~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~ 147 (326)
.+...+||.+|+++|++.+ +.+|+++++|.+|+. ++++|.+...+|+.+ .+|+||+| +|++.+..++.
T Consensus 190 ~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~--~~~~~~~~~~~~~~~-~ad~vI~a---~p~~~~~~ll~--- 260 (434)
T PRK07233 190 LGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVI--DGGGVTGVEVDGEEE-DFDAVIST---APPPILARLVP--- 260 (434)
T ss_pred EeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEE--cCCceEEEEeCCceE-ECCEEEEC---CCHHHHHhhcC---
Confidence 4456899999999998765 568999999999987 567776554555543 79999999 88888877763
Q ss_pred CCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCCCCceeecCC-CceeeeeecCCC-CCCC-CCCceEEE--EeCHH
Q 020469 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS-EVLSWAHCDSSK-PGRS-ANSERWVL--HSTAD 222 (326)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~~g~~~~~~-~~l~w~~~~ssk-pgr~-~~~~~~~~--~~~~~ 222 (326)
.+.+...+.+..+.|.+++++++.|++++.. + .-..+.+. .++.++...+.. |... ++..++++ +..+.
T Consensus 261 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~ 334 (434)
T PRK07233 261 ----DLPADVLARLRRIDYQGVVCMVLKLRRPLTD-Y-YWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGD 334 (434)
T ss_pred ----CCcHHHHhhhcccCccceEEEEEEecCCCCC-C-ceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCC
Confidence 2345566678888999999999999987532 1 11111121 233334333333 3332 22222222 22221
Q ss_pred HHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCC--CCcceeeeeecCCCCCCCCCCCC--CCeeeccCCCeEEeeC
Q 020469 223 YARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICGD 298 (326)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~--~~p~~~~~~rW~~A~p~~~~~~~--~~~~~~~~~~l~~aGD 298 (326)
...... +++++.+.+++.+.++.+.. ..+....++||+++.|.+.++.. .+.+..+.++|++|||
T Consensus 335 --~~~~~~---------~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~ 403 (434)
T PRK07233 335 --HPLWQM---------SDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGM 403 (434)
T ss_pred --ChhhcC---------CHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCC
Confidence 112221 45778888888888875533 24677889999999998766531 2233455689999999
Q ss_pred CCC---CCChhHHHHHHHHHHHHHHhhhc
Q 020469 299 FCV---SPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 299 ~~~---g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
+.. +++||+|++||+.+|++|++.+.
T Consensus 404 ~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 404 SQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred cccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 642 35899999999999999998775
No 13
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.75 E-value=1.6e-17 Score=157.38 Aligned_cols=227 Identities=22% Similarity=0.330 Sum_probs=151.7
Q ss_pred EEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhh-hcCCCCCCC
Q 020469 72 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRPPPLD 150 (326)
Q Consensus 72 yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~-ll~~~~~~~ 150 (326)
+.+.+++..+.+.+++..+.+|+++++|++|+. +++++.+...+|+.+ .||+||+| +|.+.+.. .+. |
T Consensus 205 ~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~--~~~~v~v~~~~g~~~-~ad~VI~a---~p~~~l~~i~~~-p---- 273 (450)
T PF01593_consen 205 TVGMGGLSLALALAAEELGGEIRLNTPVTRIER--EDGGVTVTTEDGETI-EADAVISA---VPPSVLKNILLL-P---- 273 (450)
T ss_dssp EEETTTTHHHHHHHHHHHGGGEESSEEEEEEEE--ESSEEEEEETTSSEE-EESEEEE----S-HHHHHTSEEE-S----
T ss_pred eecccchhHHHHHHHhhcCceeecCCcceeccc--cccccccccccceEE-ecceeeec---Cchhhhhhhhhc-c----
Confidence 344555566666666656678999999999998 668899999999754 89999999 88888775 222 1
Q ss_pred CCcChHHHHHhccCCCcceeeeeeecCCCCCCCC--CCceeecCC-CceeeeeecCCCCCCCCCCceEEEEeCHHHHHHh
Q 020469 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDS-EVLSWAHCDSSKPGRSANSERWVLHSTADYARTV 227 (326)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p--~~g~~~~~~-~~l~w~~~~sskpgr~~~~~~~~~~~~~~~~~~~ 227 (326)
.+.....+.++.++|.++.++.+.|+++.|... ..++.+.+. ..+.++...+.++++ ++...++......+....
T Consensus 274 -~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 351 (450)
T PF01593_consen 274 -PLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEW 351 (450)
T ss_dssp -TSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHH
T ss_pred -cccccccccccccccCcceeEEEeeecccccccccccceecccCccccccccccccCccc-ccCCcceeeeeccccchh
Confidence 233445677789999999999999999987532 455555443 345566566555665 333445554445444333
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHHHhcCC--CCCCcceeeeeecCC-CCCCCCCCC---CCC-----eeeccC-CCeEE
Q 020469 228 IAQTGLQKPSEATLKKVAEEMFQEFQGTGL--SIPLPIFRKAHRWGS-AFPAASIAK---EER-----CLWDVK-RRLAI 295 (326)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~--~~~~p~~~~~~rW~~-A~p~~~~~~---~~~-----~~~~~~-~~l~~ 295 (326)
.+. +.+++.+.+++.+.++.+ ..+.|....+++|.. ..+...... ... .+..+. ++|+|
T Consensus 352 ~~~---------~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 422 (450)
T PF01593_consen 352 DDL---------SDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYF 422 (450)
T ss_dssp TTS---------CHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE
T ss_pred ccc---------chhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEE
Confidence 222 467778888888877544 234567777889987 333332221 011 122333 69999
Q ss_pred eeCCCCCC---ChhHHHHHHHHHHHHHH
Q 020469 296 CGDFCVSP---NVEGAILSGLDAASKLT 320 (326)
Q Consensus 296 aGD~~~g~---~vegA~~SG~~aA~~l~ 320 (326)
||||+.++ ++|||+.||.++|++|+
T Consensus 423 aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 423 AGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp -SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred eecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 99998855 99999999999999986
No 14
>PLN02976 amine oxidase
Probab=99.74 E-value=1.7e-16 Score=163.47 Aligned_cols=233 Identities=14% Similarity=0.157 Sum_probs=155.4
Q ss_pred ceEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeec--------CCCCeEEEccCCCccccccEEEeccCCCCCcchhh
Q 020469 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLE--------DKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD 141 (326)
Q Consensus 70 ~~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~--------~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ 141 (326)
..|+..+||++|+++|++.++ |+++++|++|.+.. .+++|.|.+.+|+.+ .||+||+| +|...+..
T Consensus 927 ~~~rIkGGYqqLIeALAe~L~--IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetf-tADaVIVT---VPLGVLKa 1000 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGLD--IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEF-LGDAVLIT---VPLGCLKA 1000 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhCC--eecCCeEEEEEecCCcccccccCCCcEEEEECCCCEE-EeceEEEe---CCHHHhhh
Confidence 578889999999999999886 99999999998721 136799998888765 79999999 77766542
Q ss_pred -hcCCCCCCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCC--CCceeecCC--CceeeeeecCCCCCCCCCCceEE
Q 020469 142 -VTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDS--EVLSWAHCDSSKPGRSANSERWV 216 (326)
Q Consensus 142 -ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p--~~g~~~~~~--~~l~w~~~~sskpgr~~~~~~~~ 216 (326)
.+.+.| +|++...++++.+.|....++++.|++++|..+ +.|....+. ....|..++...+. +...++
T Consensus 1001 g~I~FsP----PLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~ps---G~pVLV 1073 (1713)
T PLN02976 1001 ETIKFSP----PLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTV---GAPVLI 1073 (1713)
T ss_pred cccccCC----cccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCC---CCCEEE
Confidence 233333 355555677899999999999999999998532 333322211 11224555554432 122445
Q ss_pred EEeCHHHHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC--CCCcceeeeeecCC---CCCCC---CCCCCC---Ce
Q 020469 217 LHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGS---AFPAA---SIAKEE---RC 285 (326)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~--~~~p~~~~~~rW~~---A~p~~---~~~~~~---~~ 285 (326)
....+..+...... ..+++.+.+++.|..+++. .+.|....+++|.. +.-.| ++|... ..
T Consensus 1074 afv~G~aAreiEsL---------SDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~ 1144 (1713)
T PLN02976 1074 ALVVGKAAIDGQSM---------SSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDI 1144 (1713)
T ss_pred EEeccHhHHHHhhC---------CHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHH
Confidence 54445444432222 3466667777777776542 35789999999973 22221 122111 11
Q ss_pred eecc-CCCeEEeeCCCC---CCChhHHHHHHHHHHHHHHhhhc
Q 020469 286 LWDV-KRRLAICGDFCV---SPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 286 ~~~~-~~~l~~aGD~~~---g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
+..+ .++|+|||+.+. .++|+||+.||+++|++|+..+.
T Consensus 1145 LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1145 LGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred HhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 2234 456999998653 47999999999999999998764
No 15
>PLN02676 polyamine oxidase
Probab=99.73 E-value=3.3e-16 Score=151.51 Aligned_cols=227 Identities=20% Similarity=0.210 Sum_probs=150.1
Q ss_pred CCCchHHHHHHhcCC---------CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhh-hcC
Q 020469 75 VPGMNSICKALCHQP---------GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTG 144 (326)
Q Consensus 75 ~~Gm~~l~~~La~~l---------~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~-ll~ 144 (326)
.+|+++|++.|++.+ +.+|+++++|++|.+ +++++.|.+.+|+.+ .+|+||+| +|...+.. .+.
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~--~~~gV~V~~~~G~~~-~a~~VIvt---vPl~vLk~~~I~ 293 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISY--SKNGVTVKTEDGSVY-RAKYVIVS---VSLGVLQSDLIK 293 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEE--cCCcEEEEECCCCEE-EeCEEEEc---cChHHhccCceE
Confidence 579999999999876 256999999999998 677899999888755 89999999 66665442 233
Q ss_pred CCCCCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCC--CCceeecCCC---ceeeeeecCCCCCCCCCCceEEEEe
Q 020469 145 RPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSE---VLSWAHCDSSKPGRSANSERWVLHS 219 (326)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p--~~g~~~~~~~---~l~w~~~~sskpgr~~~~~~~~~~~ 219 (326)
+.| ++++...++++.+.|....++.+.|++|+|... ..++.+.+.. ...|...+.+.|+ ...++...
T Consensus 294 F~P----~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ 365 (487)
T PLN02676 294 FKP----PLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPG----SNVLFVTV 365 (487)
T ss_pred EeC----CCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCC----CCEEEEEe
Confidence 333 355556678899999999999999999998521 1122221111 0113222323332 22455555
Q ss_pred CHHHHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCC-CCCCcceeeeeecCCC---C---CCCCCCCCC---Ceeecc
Q 020469 220 TADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL-SIPLPIFRKAHRWGSA---F---PAASIAKEE---RCLWDV 289 (326)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~-~~~~p~~~~~~rW~~A---~---p~~~~~~~~---~~~~~~ 289 (326)
....+.. ++.. ++++..+.+++.+.++.+ ..+.|.....++|..- . ...++|... ..+..+
T Consensus 366 ~g~~a~~-~~~~--------s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P 436 (487)
T PLN02676 366 TDEESRR-IEQQ--------PDSETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAP 436 (487)
T ss_pred chHHHHH-HHhC--------CHHHHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCC
Confidence 5555443 3321 345556666667666543 3456888889999732 1 112222111 123456
Q ss_pred CCCeEEeeCCCC---CCChhHHHHHHHHHHHHHHhhhc
Q 020469 290 KRRLAICGDFCV---SPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 290 ~~~l~~aGD~~~---g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
.++|+|||+.+. .++||||++||+++|++|+..+.
T Consensus 437 ~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 437 VGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred CCceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 789999998765 47999999999999999998764
No 16
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.73 E-value=1.5e-16 Score=146.89 Aligned_cols=235 Identities=17% Similarity=0.184 Sum_probs=162.6
Q ss_pred CceEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcCCCCC
Q 020469 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPP 148 (326)
Q Consensus 69 ~~~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~~ 148 (326)
.+++--.+||+.|+++.++.++..|.++++|.+|.. +++++.|++.+.+.+ .+|.||+| +|.-.+.++ .+.|
T Consensus 199 ~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q--~~~gV~Vt~~~~~~~-~ad~~i~t---iPl~~l~qI-~f~P- 270 (450)
T COG1231 199 TQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQ--DGDGVTVTADDVGQY-VADYVLVT---IPLAILGQI-DFAP- 270 (450)
T ss_pred chhhccCccHHHHHHHHHHHhhceEEecCceeeEEE--cCCeEEEEeCCcceE-EecEEEEe---cCHHHHhhc-ccCC-
Confidence 345555599999999999999989999999999998 888999998883334 78999999 555444443 2332
Q ss_pred CCCCcChHHHHHhccCCCcceeeeeeecCCCCCC-CC-CCceeecCCCceeeeeecCCCCCCCCCCceEEEEeCHHHHHH
Q 020469 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IP-VKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYART 226 (326)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~p-~~g~~~~~~~~l~w~~~~sskpgr~~~~~~~~~~~~~~~~~~ 226 (326)
.+.+++++++..+.|.++.+..+.|++|+|+ .. +.|..+.+.. +..++++++ +..+. .-|++.+..|+.+
T Consensus 271 ---~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~-~~~i~~~s~-~~~~G---~gVl~g~~~~g~~ 342 (450)
T COG1231 271 ---LLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLG-LGFISYPSA-PFADG---PGVLLGSYAFGDD 342 (450)
T ss_pred ---CCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCC-cceEecCcc-ccCCC---ceEEEeeeecccc
Confidence 3567888999999999999999999999996 45 6777776654 666666666 44332 2356665554443
Q ss_pred hHhhcCCCCCchhhHHHHHHHHHHHHHhcCC-CCC-CcceeeeeecCCCCCC------CCCCCC---CCeeeccCCCeEE
Q 020469 227 VIAQTGLQKPSEATLKKVAEEMFQEFQGTGL-SIP-LPIFRKAHRWGSAFPA------ASIAKE---ERCLWDVKRRLAI 295 (326)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~-~~~-~p~~~~~~rW~~A~p~------~~~~~~---~~~~~~~~~~l~~ 295 (326)
.+..+.+ .+++-.+.++..+.++.+ ... ...+...++|....-. .+.+.. .+.+-.+.+||++
T Consensus 343 A~~~~~~------~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~ 416 (450)
T COG1231 343 ALVIDAL------PEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHF 416 (450)
T ss_pred ceeEecC------CHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEE
Confidence 3322211 234455556666666554 222 3444478888754322 111211 1223367899999
Q ss_pred eeC---CCCCCChhHHHHHHHHHHHHHHhhhcc
Q 020469 296 CGD---FCVSPNVEGAILSGLDAASKLTEILSC 325 (326)
Q Consensus 296 aGD---~~~g~~vegA~~SG~~aA~~l~~~l~~ 325 (326)
||. -..++.+|||++||+++|.+|...++.
T Consensus 417 AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 417 AGTEHASEFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred eeecccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 993 356899999999999999999987764
No 17
>PLN02568 polyamine oxidase
Probab=99.68 E-value=4.4e-15 Score=144.86 Aligned_cols=236 Identities=15% Similarity=0.191 Sum_probs=150.4
Q ss_pred ceEEeCCCchHHHHHHhcCCC-CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhh-----c
Q 020469 70 KKYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-----T 143 (326)
Q Consensus 70 ~~yv~~~Gm~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~l-----l 143 (326)
..++..+||++|+++|++.++ .+|+++++|++|++ .+++|.|++.+|+.+ .||+||+| +|++.+... +
T Consensus 233 ~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~--~~~~v~V~~~dG~~~-~aD~VIvT---vPl~vL~~~~~~~~i 306 (539)
T PLN02568 233 EEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEW--QDEPVKLHFADGSTM-TADHVIVT---VSLGVLKAGIGEDSG 306 (539)
T ss_pred CeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEE--eCCeEEEEEcCCCEE-EcCEEEEc---CCHHHHhhccccccc
Confidence 467789999999999999885 56999999999998 677899998888654 79999999 787776542 1
Q ss_pred CCCCCCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCC-----CC--ceeecCCC-------ceeeeee--cCCCCC
Q 020469 144 GRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP-----VK--GFSFQDSE-------VLSWAHC--DSSKPG 207 (326)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p-----~~--g~~~~~~~-------~l~w~~~--~sskpg 207 (326)
.+.| ++++...++++.+.|....++.+.|++++|..+ +. +++..+++ ...|+-. +-+ |.
T Consensus 307 ~F~P----~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 381 (539)
T PLN02568 307 LFSP----PLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASIC-PI 381 (539)
T ss_pred eecC----CCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccc-cc
Confidence 1222 355555778899999999999999999986321 11 11111110 0012100 000 10
Q ss_pred CCCCCceEEEEeCHHHHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC-----------------------CCCcce
Q 020469 208 RSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS-----------------------IPLPIF 264 (326)
Q Consensus 208 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~-----------------------~~~p~~ 264 (326)
..+...++.....+.+... +.- +++++.+.++..+.++.+. .+.|..
T Consensus 382 -~~~~~vL~~~~~G~~A~~~-e~l--------~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 451 (539)
T PLN02568 382 -HKNSSVLLSWFAGKEALEL-EKL--------SDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVK 451 (539)
T ss_pred -CCCCCEEEEEeccHHHHHH-HcC--------CHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCce
Confidence 0112355666666655533 321 3456666666666654321 135788
Q ss_pred eeeeecCC---CCCC---CCCCCCC---Ceeecc-------------CCCeEEeeCCCCC---CChhHHHHHHHHHHHHH
Q 020469 265 RKAHRWGS---AFPA---ASIAKEE---RCLWDV-------------KRRLAICGDFCVS---PNVEGAILSGLDAASKL 319 (326)
Q Consensus 265 ~~~~rW~~---A~p~---~~~~~~~---~~~~~~-------------~~~l~~aGD~~~g---~~vegA~~SG~~aA~~l 319 (326)
...++|.. +.-. .+++... ..+..| .++|+|||..+.. ++|+||++||+++|++|
T Consensus 452 ~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i 531 (539)
T PLN02568 452 VLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRL 531 (539)
T ss_pred EEeCCCCCCCccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHH
Confidence 88999973 1111 1112110 112222 2379999987643 68999999999999999
Q ss_pred HhhhccC
Q 020469 320 TEILSCL 326 (326)
Q Consensus 320 ~~~l~~~ 326 (326)
++...|.
T Consensus 532 ~~~~~~~ 538 (539)
T PLN02568 532 LQHYKCV 538 (539)
T ss_pred HHHhccC
Confidence 9987763
No 18
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.64 E-value=1.8e-15 Score=137.73 Aligned_cols=233 Identities=18% Similarity=0.230 Sum_probs=169.7
Q ss_pred CCceEEeCCCchHHHHHHhcCCC---CeeEcceeEeeEEeecCCCCeEEEcc--CCCccccccEEEeccCCCCCcchhhh
Q 020469 68 MNKKYVGVPGMNSICKALCHQPG---VESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASDKNVVSPRFRDV 142 (326)
Q Consensus 68 ~~~~yv~~~Gm~~l~~~La~~l~---~~i~~~~~V~~i~~~~~~~~w~l~~~--~g~~~~~~d~VVla~~~~pap~~~~l 142 (326)
..+.|..++||+.++++|-+.++ +.|.++-++..+.. ...++|.++.. ++.....++.++.| +|++.++.+
T Consensus 238 ~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk-~~~~~~~~tl~~~~~~~~~~~~~~~~t---~~~~k~a~l 313 (491)
T KOG1276|consen 238 KWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSK-SRSGNWSLTLVDHSGTQRVVVSYDAAT---LPAVKLAKL 313 (491)
T ss_pred ccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccc-cccCCceeEeEcCCCceeeeccccccc---cchHHhhhh
Confidence 45678889999999999999886 44677778888775 34567988764 34433356666668 899988888
Q ss_pred cCCCCCCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCCCCcee--ec--C---CCceeeeeecCCC-CCCCCCCce
Q 020469 143 TGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFS--FQ--D---SEVLSWAHCDSSK-PGRSANSER 214 (326)
Q Consensus 143 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~~g~~--~~--~---~~~l~w~~~~ssk-pgr~~~~~~ 214 (326)
+. ...+.+..+|.+++|.|+.+|.+.|+.+-...|..||. ++ + .+.+. +.+||.. |.|++. ..
T Consensus 314 l~-------~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG-~ifdS~~Fp~~~~s-~~ 384 (491)
T KOG1276|consen 314 LR-------GLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLG-TIFDSMLFPDRSPS-PK 384 (491)
T ss_pred cc-------ccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeE-EEeecccCCCCCCC-ce
Confidence 75 45567888899999999999999999863345776664 66 2 12455 4455554 777763 36
Q ss_pred EEEEeCHHHHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCCCCCCC------Ceeec
Q 020469 215 WVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWD 288 (326)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~A~p~~~~~~~~------~~~~~ 288 (326)
++++....|+. +..- ..+ +.+++.+....+++..++....|.+..+|-|+.++|++..||.. ..+.+
T Consensus 385 vtvm~gg~~~~-n~~~---~~~---S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~ 457 (491)
T KOG1276|consen 385 VTVMMGGGGST-NTSL---AVP---SPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTD 457 (491)
T ss_pred EEEEecccccc-cCcC---CCC---CHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHh
Confidence 77777777776 3221 111 45667777777777654444569999999999999999998731 12222
Q ss_pred c-CCCeEEeeCCCCCCChhHHHHHHHHHHHHHH
Q 020469 289 V-KRRLAICGDFCVSPNVEGAILSGLDAASKLT 320 (326)
Q Consensus 289 ~-~~~l~~aGD~~~g~~vegA~~SG~~aA~~l~ 320 (326)
. ..+|++||.|+.|.+|.+|+.||+.+|..++
T Consensus 458 ~~g~~l~l~G~~y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 458 SPGLGLFLGGNHYGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred CCCCceEeeccccCCCChhHHHHhhHHHHHhhc
Confidence 2 4699999999999999999999999998775
No 19
>PLN02612 phytoene desaturase
Probab=99.64 E-value=1.4e-14 Score=142.74 Aligned_cols=223 Identities=14% Similarity=0.113 Sum_probs=131.0
Q ss_pred hHHHHHHhc---CCCCeeEcceeEeeEEeecCCCC--eEEEccCCCccccccEEEeccCCCCCcchhhhcCCCCCCCCCc
Q 020469 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTF 153 (326)
Q Consensus 79 ~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~--w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~~~~~~~ 153 (326)
..|++.|++ ..|.+|+++++|++|.. ++++ +.+.+.+|+.+ .+|+||+| +|++.+..|+... ..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~--~~~g~v~~v~~~~G~~~-~ad~VI~a---~p~~~l~~Ll~~~-----~~ 376 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIEL--NDDGTVKHFLLTNGSVV-EGDVYVSA---TPVDILKLLLPDQ-----WK 376 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEE--CCCCcEEEEEECCCcEE-ECCEEEEC---CCHHHHHHhCcch-----hc
Confidence 455565554 25789999999999987 4444 33555677654 79999999 7777666665311 01
Q ss_pred ChHHHHHhccCCCcceeeeeeecCCCCCCCCCCceeecCCCceeeeeecCCC--CCC-CCCCceEEEEeCHHHHHHhHhh
Q 020469 154 APDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSK--PGR-SANSERWVLHSTADYARTVIAQ 230 (326)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~~g~~~~~~~~l~w~~~~ssk--pgr-~~~~~~~~~~~~~~~~~~~~~~ 230 (326)
...+.+.+..+.+.+++++.+.|+++++. +.++.++.+.+.+. +..+.+. +.. .++...+.+..++ +.++.+.
T Consensus 377 ~~~~~~~l~~l~~~~v~~v~l~~dr~~~~-~~~~~~~~~~~~~~-~~~d~S~~~~~~~~~~~~ll~~~~~~--a~~~~~~ 452 (567)
T PLN02612 377 EIPYFKKLDKLVGVPVINVHIWFDRKLKN-TYDHLLFSRSPLLS-VYADMSTTCKEYYDPNKSMLELVFAP--AEEWISR 452 (567)
T ss_pred CcHHHHHHHhcCCCCeEEEEEEECcccCC-CCCceeecCCCCce-eehhhhhcchhhcCCCCeEEEEEEEc--ChhhhcC
Confidence 12455566778899999999999999763 44555554433222 2222111 111 1111111111111 1222222
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhcCCCCCCc-------ceeeeeecCCCCCCCCCCC--CCCeeeccCCCeEEeeCCCC
Q 020469 231 TGLQKPSEATLKKVAEEMFQEFQGTGLSIPLP-------IFRKAHRWGSAFPAASIAK--EERCLWDVKRRLAICGDFCV 301 (326)
Q Consensus 231 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~p-------~~~~~~rW~~A~p~~~~~~--~~~~~~~~~~~l~~aGD~~~ 301 (326)
+++++.+.+++++.++.+....+ ....+.+..++.....++. ..+.+..+.++|++||||+.
T Consensus 453 ---------sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~ 523 (567)
T PLN02612 453 ---------SDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTK 523 (567)
T ss_pred ---------CHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeeccee
Confidence 45778888888888765432111 2222223333321111121 01233456678999999985
Q ss_pred C---CChhHHHHHHHHHHHHHHhhhcc
Q 020469 302 S---PNVEGAILSGLDAASKLTEILSC 325 (326)
Q Consensus 302 g---~~vegA~~SG~~aA~~l~~~l~~ 325 (326)
. ++||||++||+.+|++|++.+..
T Consensus 524 ~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 524 QKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 4 68999999999999999987654
No 20
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.60 E-value=7.4e-14 Score=134.46 Aligned_cols=217 Identities=15% Similarity=0.171 Sum_probs=126.7
Q ss_pred chHHHHHHhcC---CCCeeEcceeEeeEEeecCCCCe-EEEccCCC-----ccccccEEEeccCCCCCcchhhhcCCCCC
Q 020469 78 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQ-----SLGQFNGVVASDKNVVSPRFRDVTGRPPP 148 (326)
Q Consensus 78 m~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w-~l~~~~g~-----~~~~~d~VVla~~~~pap~~~~ll~~~~~ 148 (326)
++.+++.|++. .+.+|+++++|++|... +++.+ .+.+.+|+ .+ .+|+||+| +|++.+.++|. .
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~-~~~~v~~v~~~~~~~~~~~~~-~a~~VI~a---~p~~~~~~lL~--~- 283 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLN-EDGSVKHFVLADGEGQRRFEV-TADAYVSA---MPVDIFKLLLP--Q- 283 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEEC-CCCCEEEEEEecCCCCceeEE-ECCEEEEc---CCHHHHHhhCc--h-
Confidence 44455544443 47789999999999862 23322 23333332 33 78999999 88888777753 1
Q ss_pred CCCCcC-hHHHHHhccCCCcceeeeeeecCCCCCCCCCCceeecCCCceeeeeecCC-C--CCCCCCCceEEEEeCHHHH
Q 020469 149 LDLTFA-PDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSS-K--PGRSANSERWVLHSTADYA 224 (326)
Q Consensus 149 ~~~~~~-~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~~g~~~~~~~~l~w~~~~ss-k--pgr~~~~~~~~~~~~~~~~ 224 (326)
... ..+.+.+..++|.++.++.+.|+++++. ..++++...+.+. +..+.+ . ..+.++...+.+.....
T Consensus 284 ---~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~~~~~~-- 355 (453)
T TIGR02731 284 ---PWKQMPFFQKLNGLEGVPVINVHIWFDRKLTT--VDHLLFSRSPLLS-VYADMSETCKEYADPDKSMLELVFAPA-- 355 (453)
T ss_pred ---hhhcCHHHHHhhcCCCCcEEEEEEEEccccCC--CCceeeeCCCcce-eecchhhhChhhcCCCCeEEEEEecCh--
Confidence 111 2455667778899999999999998752 3355554443322 112211 1 11222222222222221
Q ss_pred HHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCC---CCc---ceeeeeecCCCCCCCCCCC--CCCeeeccCCCeEEe
Q 020469 225 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI---PLP---IFRKAHRWGSAFPAASIAK--EERCLWDVKRRLAIC 296 (326)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~---~~p---~~~~~~rW~~A~p~~~~~~--~~~~~~~~~~~l~~a 296 (326)
....+. +++++.+.+++.+.++.+.. ..+ ......+.+|+.+..+++. ..+.+..+.++|++|
T Consensus 356 ~~~~~~---------~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~A 426 (453)
T TIGR02731 356 ADWIGR---------SDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLA 426 (453)
T ss_pred hhhhcC---------CHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEe
Confidence 222222 45677777788777764321 123 3334445666654333332 123445667899999
Q ss_pred eCCCC---CCChhHHHHHHHHHHHHH
Q 020469 297 GDFCV---SPNVEGAILSGLDAASKL 319 (326)
Q Consensus 297 GD~~~---g~~vegA~~SG~~aA~~l 319 (326)
|||.. .++||||++||.++|++|
T Consensus 427 G~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 427 GDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred ehhccCcccccHHHHHHHHHHHHHHh
Confidence 99974 469999999999999987
No 21
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.59 E-value=4.2e-14 Score=136.59 Aligned_cols=221 Identities=10% Similarity=0.092 Sum_probs=131.4
Q ss_pred chHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeE-E---EccCC---CccccccEEEeccCCCCCcchhhhcCCCCCCC
Q 020469 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-V---SGLDG---QSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (326)
Q Consensus 78 m~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~-l---~~~~g---~~~~~~d~VVla~~~~pap~~~~ll~~~~~~~ 150 (326)
++.++++|.+ .|.+|+++++|++|.....+++|. + ...+| +.+ .+|+||+| +|++.+.+|+.-..
T Consensus 222 ~~pl~~~L~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~-~aD~VVlA---~p~~~~~~Ll~~~~--- 293 (474)
T TIGR02732 222 TKPILEYIEA-RGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVI-KADAYVAA---CDVPGIKRLLPQEW--- 293 (474)
T ss_pred HHHHHHHHHH-CCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEE-ECCEEEEC---CChHHHHhhCChhh---
Confidence 3447778876 567899999999998721113442 3 23333 223 68999999 89999888874110
Q ss_pred CCcChHHHHHhccCCCcceeeeeeecCCCCCCCCCC---------ceeecC---CCceeeeee-cCC--CCCC--CCCCc
Q 020469 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVK---------GFSFQD---SEVLSWAHC-DSS--KPGR--SANSE 213 (326)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~~---------g~~~~~---~~~l~w~~~-~ss--kpgr--~~~~~ 213 (326)
. .....+.+..+.|.||.+|++.|++++.. |.. ...+.+ .....|.+. +-+ .|+. ..+..
T Consensus 294 -~-~~~~~~~l~~l~~~pi~~v~l~~~~~v~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (474)
T TIGR02732 294 -R-QFEEFDNIYKLDAVPVATVQLRYDGWVTE-LQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQG 370 (474)
T ss_pred -h-cCHHHhhHhcCCCCCeEEEEEEecccccc-ccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCC
Confidence 0 11345567788999999999999986532 210 000110 011122220 100 0100 01111
Q ss_pred e-EEEEeCHHHHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCC--CcceeeeeecCCCCCCCCCCCC--CCeeec
Q 020469 214 R-WVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIP--LPIFRKAHRWGSAFPAASIAKE--ERCLWD 288 (326)
Q Consensus 214 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~--~p~~~~~~rW~~A~p~~~~~~~--~~~~~~ 288 (326)
. +-+..++. ..+++. +++++.+...++++++.+..+ .+....+.|...|.+...+|.. .+....
T Consensus 371 ~~l~~~~~~~--~~~~~~---------~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t 439 (474)
T TIGR02732 371 SLLQCVLTPG--DPWMPE---------SNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKT 439 (474)
T ss_pred eEEEEEEeCh--hhhcCC---------CHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCC
Confidence 1 11222222 223332 457777778888877654322 3555667788888766555532 233445
Q ss_pred cCCCeEEeeCCCCC---CChhHHHHHHHHHHHHHH
Q 020469 289 VKRRLAICGDFCVS---PNVEGAILSGLDAASKLT 320 (326)
Q Consensus 289 ~~~~l~~aGD~~~g---~~vegA~~SG~~aA~~l~ 320 (326)
+.++|++||||... .++|+|++||+.+|+.|+
T Consensus 440 ~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 440 PISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 67899999999877 699999999999999873
No 22
>PRK07208 hypothetical protein; Provisional
Probab=99.51 E-value=3.6e-13 Score=130.63 Aligned_cols=227 Identities=14% Similarity=0.058 Sum_probs=144.2
Q ss_pred CCCchHHHHHHhcCC---CCeeEcceeEeeEEeecCCCCeE--EEc--cCCCc-cccccEEEeccCCCCCcchhhhcCCC
Q 020469 75 VPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWS--VSG--LDGQS-LGQFNGVVASDKNVVSPRFRDVTGRP 146 (326)
Q Consensus 75 ~~Gm~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~~w~--l~~--~~g~~-~~~~d~VVla~~~~pap~~~~ll~~~ 146 (326)
++||++|++.|++.+ +.+|+++++|++|.. ++++|. +.. .+|+. ...+|+||+| +|++.+..++. +
T Consensus 214 ~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~--~~~~~v~~~~~~~~~g~~~~~~ad~VI~a---~p~~~l~~~l~-~ 287 (479)
T PRK07208 214 KLGPGQLWETAAEKLEALGGKVVLNAKVVGLHH--DGDGRIAVVVVNDTDGTEETVTADQVISS---MPLRELVAALD-P 287 (479)
T ss_pred CCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEE--cCCcEEEEEEEEcCCCCEEEEEcCEEEEC---CCHHHHHHhcC-C
Confidence 799999999998765 678999999999997 555543 322 23431 1268999999 88888888764 1
Q ss_pred CCCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCCCCceeecCCC-ceeeeeecCCC-CCCCCCCceEEEE--eCHH
Q 020469 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSE-VLSWAHCDSSK-PGRSANSERWVLH--STAD 222 (326)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~~g~~~~~~~-~l~w~~~~ssk-pgr~~~~~~~~~~--~~~~ 222 (326)
.+++...+.++.++|.++.++++.|+++.. .+....++++.+ .+..+...+.. |.+.+.+...++. -...
T Consensus 288 -----~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~ 361 (479)
T PRK07208 288 -----PPPPEVRAAAAGLRYRDFITVGLLVKELNL-FPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCF 361 (479)
T ss_pred -----CCCHHHHHHHhCCCcceeEEEEEEecCCCC-CCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEcc
Confidence 244567777889999999999999998743 232222232211 11111111110 2222222211221 1100
Q ss_pred HHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC-CCCcceeeeeecCCCCCCCCCCCCCCe-----eeccCCCeEEe
Q 020469 223 YARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS-IPLPIFRKAHRWGSAFPAASIAKEERC-----LWDVKRRLAIC 296 (326)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~-~~~p~~~~~~rW~~A~p~~~~~~~~~~-----~~~~~~~l~~a 296 (326)
.....+.. +++++.+..++++.+++.. ...|....++||.++.|++..++.... +.++.++|++|
T Consensus 362 ~~~~~~~~---------~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~la 432 (479)
T PRK07208 362 EGDDLWNM---------SDEDLIALAIQELARLGLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLV 432 (479)
T ss_pred CCCccccC---------CHHHHHHHHHHHHHHcCCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceee
Confidence 00111221 3567888888888886432 345888999999999999987752111 22456799999
Q ss_pred eCCC--CCCChhHHHHHHHHHHHHHHhh
Q 020469 297 GDFC--VSPNVEGAILSGLDAASKLTEI 322 (326)
Q Consensus 297 GD~~--~g~~vegA~~SG~~aA~~l~~~ 322 (326)
|++. .-..+|+|+.||.++|+.|+..
T Consensus 433 Gr~~~~~~~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 433 GRNGMHRYNNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred ccccccccCChhHHHHHHHHHHHHHhcC
Confidence 9753 2258999999999999998753
No 23
>PLN02487 zeta-carotene desaturase
Probab=99.48 E-value=2e-12 Score=126.52 Aligned_cols=232 Identities=11% Similarity=0.063 Sum_probs=135.3
Q ss_pred eEEeCCCchH-HHHHHhcC---CCCeeEcceeEeeEEeecCCCC----eEEEc---cCCCccccccEEEeccCCCCCcch
Q 020469 71 KYVGVPGMNS-ICKALCHQ---PGVESKFGVGVGRFEWLEDKNL----WSVSG---LDGQSLGQFNGVVASDKNVVSPRF 139 (326)
Q Consensus 71 ~yv~~~Gm~~-l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~----w~l~~---~~g~~~~~~d~VVla~~~~pap~~ 139 (326)
.+..++|+.. |++.+++. .|.+|+++++|++|....++++ +.+.. .+++.+ .+|+||+| +|++.+
T Consensus 286 l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~-~aD~VV~A---~p~~~~ 361 (569)
T PLN02487 286 LRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIV-KADAYVAA---CDVPGI 361 (569)
T ss_pred eeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEE-ECCEEEEC---CCHHHH
Confidence 3455789995 77766654 4789999999999997322233 33444 233333 68999999 888887
Q ss_pred hhhcCCCCCCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCC----------CCceee-cCCCceeeee--e--cCC
Q 020469 140 RDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP----------VKGFSF-QDSEVLSWAH--C--DSS 204 (326)
Q Consensus 140 ~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p----------~~g~~~-~~~~~l~w~~--~--~ss 204 (326)
..|+. .. ....+. .+.+..+.+.||.+|++.|+++....+ +.|+-- -+...-.|.+ + -.+
T Consensus 362 ~~Llp--~~--~~~~~~-~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~ 436 (569)
T PLN02487 362 KRLLP--EQ--WREYEF-FDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTS 436 (569)
T ss_pred HHhCC--ch--hhccHH-HhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCC
Confidence 77763 11 011122 445678889999999999998753211 111100 0000111222 1 000
Q ss_pred CCCC---CCCCceEEEEeCHHHHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCC--CcceeeeeecCCCCCCCCC
Q 020469 205 KPGR---SANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIP--LPIFRKAHRWGSAFPAASI 279 (326)
Q Consensus 205 kpgr---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~--~p~~~~~~rW~~A~p~~~~ 279 (326)
++. ...+..+-+..+++ ..++.. +++++++...+++.++.+... .+.+..+-+.+.|.....+
T Consensus 437 -~~~~~~~~~g~~l~~vis~a--~~~~~~---------~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~p 504 (569)
T PLN02487 437 -PEDYYKEGEGSLIQAVLTPG--DPYMPL---------SNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAP 504 (569)
T ss_pred -HHHHcccCCceEEEEEEcCC--ccccCC---------CHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCC
Confidence 110 00011221111221 123332 467888888888887654322 3556666666666544444
Q ss_pred CCC--CCeeeccCCCeEEeeCCCCC---CChhHHHHHHHHHHHHHHhhh
Q 020469 280 AKE--ERCLWDVKRRLAICGDFCVS---PNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 280 ~~~--~~~~~~~~~~l~~aGD~~~g---~~vegA~~SG~~aA~~l~~~l 323 (326)
|.. .|....+..+|++||||... .++|+|++||+.+|+.|++.-
T Consensus 505 g~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 505 GMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 321 13344566899999999764 489999999999999997753
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.35 E-value=1.8e-10 Score=112.20 Aligned_cols=229 Identities=15% Similarity=0.189 Sum_probs=131.6
Q ss_pred EEeCCCchHHHHHHhcCC---CCeeEcceeEeeEEeecCCC--CeEEEccC--C--CccccccEEEeccCCCCCcchhhh
Q 020469 72 YVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKN--LWSVSGLD--G--QSLGQFNGVVASDKNVVSPRFRDV 142 (326)
Q Consensus 72 yv~~~Gm~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~--~w~l~~~~--g--~~~~~~d~VVla~~~~pap~~~~l 142 (326)
|...+||++|+++|++.+ +.+|+++++|++|.. +++ .|.+..++ | +.+ .+|+||++ +|++.+..|
T Consensus 225 ~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~--~~~~~~gv~~~~~~~~~~~~~-~ad~VI~~---~~~~~~~~l 298 (492)
T TIGR02733 225 WHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHT--KGGRAGWVVVVDSRKQEDLNV-KADDVVAN---LPPQSLLEL 298 (492)
T ss_pred eeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEE--eCCeEEEEEEecCCCCceEEE-ECCEEEEC---CCHHHHHHh
Confidence 557899999999998876 788999999999987 433 24433222 1 333 69999999 788888777
Q ss_pred cCCCCCCCCCcChHHHHHhccCCCcc-eeeeeeecCCCCCCC---CCCceeecCCCceeeeeecCCCCCCCCCC-ceEEE
Q 020469 143 TGRPPPLDLTFAPDLAVKLEEIPVNP-CFALMLAFSEPLSSI---PVKGFSFQDSEVLSWAHCDSSKPGRSANS-ERWVL 217 (326)
Q Consensus 143 l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~l~~~~~~~~~---p~~g~~~~~~~~l~w~~~~sskpgr~~~~-~~~~~ 217 (326)
+..+ .+.+.+.+.++.++|++ .+++++++++..... +.....+...+.+ ++...+..|++.|.+ ..+++
T Consensus 299 l~~~-----~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~aP~G~~~l~~ 372 (492)
T TIGR02733 299 LGPL-----GLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSL-FVSISQEGDGRAPQGEATLIA 372 (492)
T ss_pred cCcc-----cCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceE-EEEeCCccccCCCCCceEEEE
Confidence 6421 34556777788888876 457889998732111 1111122222212 333333335555533 33333
Q ss_pred EeCH---HHH---HHhHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCC-cceeee------eec-------CCCCCCC
Q 020469 218 HSTA---DYA---RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPL-PIFRKA------HRW-------GSAFPAA 277 (326)
Q Consensus 218 ~~~~---~~~---~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~-p~~~~~------~rW-------~~A~p~~ 277 (326)
.... .|. ...++ +.++++++.+++.+++..+++.. .+...+ .|+ -|.....
T Consensus 373 ~~~~~~~~~~~~~~~~y~---------~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~ 443 (492)
T TIGR02733 373 SSFTDTNDWSSLDEEDYT---------AKKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQR 443 (492)
T ss_pred EcCCCHHHHcCCCHHHHH---------HHHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcC
Confidence 3221 221 11111 14566788888888765443221 111111 111 0111110
Q ss_pred CC--CCCCCeeeccCCCeEEeeCCCCC-CChhHHHHHHHHHHHHHHh
Q 020469 278 SI--AKEERCLWDVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 321 (326)
Q Consensus 278 ~~--~~~~~~~~~~~~~l~~aGD~~~g-~~vegA~~SG~~aA~~l~~ 321 (326)
.. .........+-.+|++||+|+.. +++.+|+.||+.+|+.|+.
T Consensus 444 ~~q~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 444 PSTFGPFGLSSRTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred ccccCCcCCCCCCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhh
Confidence 00 00000012456799999999875 5999999999999999975
No 25
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.27 E-value=2.3e-10 Score=110.41 Aligned_cols=233 Identities=17% Similarity=0.217 Sum_probs=146.3
Q ss_pred ceEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhh-hcCCCCC
Q 020469 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRPPP 148 (326)
Q Consensus 70 ~~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~-ll~~~~~ 148 (326)
.+.+..+|+..+...|+++++ |+++.+|..|... +++...++.+++..+ .+|.||+| +|.+.+.. .+.+.|
T Consensus 210 ~~~~~~~G~~~v~~~la~~l~--I~~~~~v~~i~~~-~~~~~~~~~~~~~~~-~~d~vvvt---~pl~vLk~~~i~F~P- 281 (501)
T KOG0029|consen 210 IHLLMKGGYEPVVNSLAEGLD--IHLNKRVRKIKYG-DDGAVKVTVETGDGY-EADAVVVT---VPLGVLKSGLIEFSP- 281 (501)
T ss_pred chhHhhCCccHHHhhcCCCcc--eeeceeeEEEEEe-cCCceEEEEECCCee-EeeEEEEE---ccHHHhccCceeeCC-
Confidence 567889999999999999665 9999999999983 222234444444434 79999999 67776544 333333
Q ss_pred CCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCCCCceee-cCCCceeeee-ecCCCCCCCCCCceEEEEeCHHHHHH
Q 020469 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSF-QDSEVLSWAH-CDSSKPGRSANSERWVLHSTADYART 226 (326)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~~g~~~-~~~~~l~w~~-~~sskpgr~~~~~~~~~~~~~~~~~~ 226 (326)
.++....++++.+.+.+..++++.|+..+|+...+-+.. +......++. .++.+|- .....++.....+-++.
T Consensus 282 ---~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~--~~~~~l~~~~~~~~a~~ 356 (501)
T KOG0029|consen 282 ---PLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPV--AGHPVLMSVVVGEAAER 356 (501)
T ss_pred ---CCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccchhhhhhcCcc--CCCCeEEEEehhhhhHH
Confidence 345566788999999999999999999999522222222 2222223311 1222321 11224555544443433
Q ss_pred hHhhcCCCCCchhhHHHHHHHHHHHHHhcCC--CCCCcceeeeeecCCCCCC------CCCCCC-CC--eeecc-CCCeE
Q 020469 227 VIAQTGLQKPSEATLKKVAEEMFQEFQGTGL--SIPLPIFRKAHRWGSAFPA------ASIAKE-ER--CLWDV-KRRLA 294 (326)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~--~~~~p~~~~~~rW~~A~p~------~~~~~~-~~--~~~~~-~~~l~ 294 (326)
.... .++++.......++.+.+ ..+.|....+.||.--... ...+.. .. -+..+ ..+++
T Consensus 357 ~~~~---------~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~f 427 (501)
T KOG0029|consen 357 VETL---------SDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVF 427 (501)
T ss_pred HhcC---------CHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEE
Confidence 3332 345666666666665443 4667888999999843211 111110 11 11223 44699
Q ss_pred EeeCCC---CCCChhHHHHHHHHHHHHHHhhhc
Q 020469 295 ICGDFC---VSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 295 ~aGD~~---~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
++|... +.++|+||+.||.++|..|+..+.
T Consensus 428 fage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 428 FAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred ecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 999875 457999999999999999987654
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.08 E-value=9.3e-09 Score=100.42 Aligned_cols=233 Identities=13% Similarity=0.070 Sum_probs=129.1
Q ss_pred eEEeCCCchHHHHHHhcC---CCCeeEcceeEeeEEeecCCC-CeEEEccCCCccccccEEEeccCCCCCcchhhhcCCC
Q 020469 71 KYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 146 (326)
Q Consensus 71 ~yv~~~Gm~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~-~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~ 146 (326)
.|...+||..++++|++. .+++|+++++|.+|.. +++ .|.|.+.+|+.+ .+|.||+| ++++.+...| ++
T Consensus 211 ~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~V~~~~g~~~-~ad~VI~a---~~~~~~~~~l-~~ 283 (502)
T TIGR02734 211 VWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIET--EGGRATAVHLADGERL-DADAVVSN---ADLHHTYRRL-LP 283 (502)
T ss_pred EEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEe--eCCEEEEEEECCCCEE-ECCEEEEC---CcHHHHHHHh-cC
Confidence 455678999999999874 4788999999999987 333 367877788655 79999999 6766665433 12
Q ss_pred CCCCCCcCh-HHHHHhccCCCc-ceeeeeeecC---CCCCCCCCCceeecC----------------CCceeeeeecCCC
Q 020469 147 PPLDLTFAP-DLAVKLEEIPVN-PCFALMLAFS---EPLSSIPVKGFSFQD----------------SEVLSWAHCDSSK 205 (326)
Q Consensus 147 ~~~~~~~~~-~~~~~l~~~~~~-~~~~v~l~~~---~~~~~~p~~g~~~~~----------------~~~l~w~~~~ssk 205 (326)
. ...+ ...+.++..+++ ++++++++++ +++...+...+++.. ..+.-++...+.+
T Consensus 284 ~----~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~ 359 (502)
T TIGR02734 284 N----HPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVT 359 (502)
T ss_pred c----cccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCC
Confidence 1 1212 233444555544 6777888887 333212221222211 0122244443333
Q ss_pred -CCCCCCC-ceEEEEeCHHHH---HHhHhhcCCCCCchhhHHHHHHHHHHHHHhc-CCCCCC-cceeee------eecCC
Q 020469 206 -PGRSANS-ERWVLHSTADYA---RTVIAQTGLQKPSEATLKKVAEEMFQEFQGT-GLSIPL-PIFRKA------HRWGS 272 (326)
Q Consensus 206 -pgr~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~-~~~~~~-p~~~~~------~rW~~ 272 (326)
|.+.+.+ ..+.++....+. ...++ +..+++.+.+++.+.+. .+.+.. .++..+ .|+ +
T Consensus 360 dp~~aP~G~~~~~~~~~~~~~~~~~~~~~---------~~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~-~ 429 (502)
T TIGR02734 360 DPSLAPPGCENLYVLAPVPHLGTADVDWS---------VEGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDR-Y 429 (502)
T ss_pred CCCCCCCCCccEEEEEeCCCCCCCCCCcH---------HHHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHh-c
Confidence 5555432 223333211111 00011 13566777888888765 333211 111110 111 1
Q ss_pred CCCCCCC-CC----C-----CCe-eeccCCCeEEeeCCCCC-CChhHHHHHHHHHHHHHHhhhc
Q 020469 273 AFPAASI-AK----E-----ERC-LWDVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 273 A~p~~~~-~~----~-----~~~-~~~~~~~l~~aGD~~~g-~~vegA~~SG~~aA~~l~~~l~ 324 (326)
..+.... |. . .+. ...+-.+|++||+|+.. ++|.+|+.||+.+|+.|+..++
T Consensus 430 ~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~ 493 (502)
T TIGR02734 430 NAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLA 493 (502)
T ss_pred CCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1111000 00 0 011 12345799999999874 6999999999999999988654
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.01 E-value=3e-08 Score=96.63 Aligned_cols=238 Identities=12% Similarity=0.113 Sum_probs=130.9
Q ss_pred eEEeCCCchHHHHHHhcCC---CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchh-hhcCCC
Q 020469 71 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFR-DVTGRP 146 (326)
Q Consensus 71 ~yv~~~Gm~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~-~ll~~~ 146 (326)
.|...+|+..|+++|++.+ |++|+++++|.+|.. .+++.+.|.+.+|+.+ .+|.||++ ..+..+. .|+.
T Consensus 221 ~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~-~ad~vV~a---~~~~~~~~~Ll~-- 293 (493)
T TIGR02730 221 INYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKI-YAKRIVSN---ATRWDTFGKLLK-- 293 (493)
T ss_pred EecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEE-EcCEEEEC---CChHHHHHHhCC--
Confidence 4667899999999887654 689999999999987 2344566777778654 79999998 4444443 4543
Q ss_pred CCCCCCcChHHHHHhccCCCc-ceeeeeeecCCCCC-C-CCCCceeec------CCCceeeeeecCCC-CCCCCCCc-eE
Q 020469 147 PPLDLTFAPDLAVKLEEIPVN-PCFALMLAFSEPLS-S-IPVKGFSFQ------DSEVLSWAHCDSSK-PGRSANSE-RW 215 (326)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~~~~~~-~-~p~~g~~~~------~~~~l~w~~~~ssk-pgr~~~~~-~~ 215 (326)
.. .+.+.....++.++++ ++++++++++.+.. . ....-+++. ...+.-++..-+.+ |.+.|.+. .+
T Consensus 294 ~~---~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i 370 (493)
T TIGR02730 294 AE---NLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHII 370 (493)
T ss_pred cc---ccchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEE
Confidence 11 2233444444555554 58888999887431 1 010111111 11122244443433 66665332 23
Q ss_pred EEEeCHHHHHHhHhhcCCCCCc-hhhHHHHHHHHHHHHHhcCCCCCC-cceeee------eecCCCCCCCCCCC--C---
Q 020469 216 VLHSTADYARTVIAQTGLQKPS-EATLKKVAEEMFQEFQGTGLSIPL-PIFRKA------HRWGSAFPAASIAK--E--- 282 (326)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~l~~~~~~~~~~~~~-p~~~~~------~rW~~A~p~~~~~~--~--- 282 (326)
.++. +.+... +. ++.... ++.++++.+.+++.+++..+.+.. .++..+ .|+. ..+....|. .
T Consensus 371 ~~~~-~~~~~~-w~--~~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~-~~~~G~~G~~~~~~~ 445 (493)
T TIGR02730 371 HTFT-PSSMED-WQ--GLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFL-GRDSGTYGPIPRRTL 445 (493)
T ss_pred EEec-CCChhh-cc--CCCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHh-CCCCcccCCcccccc
Confidence 2322 322211 10 000000 114566778888888765433221 111111 1221 111111110 0
Q ss_pred ---C--CeeeccCCCeEEeeCCCC-CCChhHHHHHHHHHHHHHHhhh
Q 020469 283 ---E--RCLWDVKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 283 ---~--~~~~~~~~~l~~aGD~~~-g~~vegA~~SG~~aA~~l~~~l 323 (326)
. +....+-.+|++||+|.. |+++.+|+.||+.+|++|+..+
T Consensus 446 ~~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 446 PGLLPMPFNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred cccccCCCCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 0 112245679999999986 5699999999999999998754
No 28
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.00 E-value=1.4e-08 Score=94.67 Aligned_cols=227 Identities=18% Similarity=0.241 Sum_probs=138.2
Q ss_pred EeCCCchHHHHHHhcCCC-Ce--------eEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCC-CCCcchhhh
Q 020469 73 VGVPGMNSICKALCHQPG-VE--------SKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKN-VVSPRFRDV 142 (326)
Q Consensus 73 v~~~Gm~~l~~~La~~l~-~~--------i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~-~pap~~~~l 142 (326)
....|...+.+.|++.+. .. ++++++|..|.+ +..+.+.|++.||+.+ .||+||+|.++ +--.+-..|
T Consensus 217 ~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~-~~~~~v~l~c~dg~v~-~adhVIvTvsLGvLk~~h~~l 294 (498)
T KOG0685|consen 217 WNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINW-KNTGEVKLRCSDGEVF-HADHVIVTVSLGVLKEQHHKL 294 (498)
T ss_pred echhHHHHHHHHHhccCCCcchhcCchhhhcccccceeecc-CCCCcEEEEEeCCcEE-eccEEEEEeechhhhhhhhhh
Confidence 345578888898888653 23 445599999998 3446789999999875 89999999532 111122224
Q ss_pred cCCCCCCCCCcChHHHHHhccCCCcceeeeeeecCCCCCCCCCCceee-cCCCcee--------ee------eecCCCCC
Q 020469 143 TGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSF-QDSEVLS--------WA------HCDSSKPG 207 (326)
Q Consensus 143 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~p~~g~~~-~~~~~l~--------w~------~~~sskpg 207 (326)
+. | +++..=.++++.+.+..+-++.+.|++|+|...+.++.+ -.++.+. |. ..-+..|
T Consensus 295 F~-P-----~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~- 367 (498)
T KOG0685|consen 295 FV-P-----PLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAP- 367 (498)
T ss_pred cC-C-----CCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcch-
Confidence 32 2 344455678999999999999999999988434555431 1111100 10 0000000
Q ss_pred CCCCCceEEEEeCHHHHHHhHhhcCCCCCchhhHHHHHHHHHHHHHhcC--CCCCCcceeeeeecCCC--------CCC-
Q 020469 208 RSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTG--LSIPLPIFRKAHRWGSA--------FPA- 276 (326)
Q Consensus 208 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~--~~~~~p~~~~~~rW~~A--------~p~- 276 (326)
+ -..+|+.-..+ ++.+. -++++|.+.+...|.... ...|.|.....+.|... ...
T Consensus 368 ~--vL~gWiaG~~~----~~me~--------lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~sv 433 (498)
T KOG0685|consen 368 N--VLLGWIAGREA----RHMET--------LSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSV 433 (498)
T ss_pred h--hhheeccCCcc----eehhh--------CCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeec
Confidence 0 01223322221 12222 156888888888888753 35677888888889632 111
Q ss_pred CCCCCC-------CCee-eccCCCeEEeeCCCCC---CChhHHHHHHHHHHHHHHhh
Q 020469 277 ASIAKE-------ERCL-WDVKRRLAICGDFCVS---PNVEGAILSGLDAASKLTEI 322 (326)
Q Consensus 277 ~~~~~~-------~~~~-~~~~~~l~~aGD~~~g---~~vegA~~SG~~aA~~l~~~ 322 (326)
+..+.. .+.. .+..+.|.|||...+. .++.||++||++-|++|++.
T Consensus 434 gs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~ 490 (498)
T KOG0685|consen 434 GSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEH 490 (498)
T ss_pred cccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHH
Confidence 111100 0111 1346689999987653 68999999999999999874
No 29
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.78 E-value=1.5e-08 Score=90.85 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=82.1
Q ss_pred CCceEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcCCCC
Q 020469 68 MNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 147 (326)
Q Consensus 68 ~~~~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~ 147 (326)
.+..++..+|..+-++.|+++++.+|+++++|.+|.+ -.++..|...+|+. ..||+||+| +-+.|++.||..+
T Consensus 209 rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~r--lPdGv~l~~~~G~s-~rFD~vViA---th~dqAl~mL~e~- 281 (447)
T COG2907 209 RPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRR--LPDGVVLVNADGES-RRFDAVVIA---THPDQALALLDEP- 281 (447)
T ss_pred CCceeEcccchHHHHHHHhccccceeecCCceeeeee--CCCceEEecCCCCc-cccceeeee---cChHHHHHhcCCC-
Confidence 3456677899999999999998888999999999998 66778888778875 489999999 7889999998633
Q ss_pred CCCCCcChHHHHHhccCCCcceeeeeeecCC
Q 020469 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSE 178 (326)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~ 178 (326)
.|+-.+.+.++.|+..-+|+..+..
T Consensus 282 ------sp~e~qll~a~~Ys~n~aVlhtd~~ 306 (447)
T COG2907 282 ------SPEERQLLGALRYSANTAVLHTDAS 306 (447)
T ss_pred ------CHHHHHHHHhhhhhhceeEEeeccc
Confidence 4566778999999999988887763
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.70 E-value=0.00069 Score=66.00 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=47.3
Q ss_pred ceEEeCCCchHHHHHHhcCC---CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 70 KKYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 70 ~~yv~~~Gm~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
-.+...+||++|+++|++.+ |++|+++++|++|.. .++.+..+.+.+|.. ..+|.||.+.
T Consensus 215 G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~-~~ad~vv~~~ 277 (487)
T COG1233 215 GVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGEN-IEADAVVSNA 277 (487)
T ss_pred CeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccce-eccceeEecC
Confidence 35677899999999998754 689999999999987 233457787777733 4799999983
No 31
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.61 E-value=0.0099 Score=55.79 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=37.6
Q ss_pred hHHHHHHhcC----CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 79 NSICKALCHQ----PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 79 ~~l~~~La~~----l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..|.+.|.+. .+++++++++|++|.. ++++|.+.+++|+.+ .+|.||.|+
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~g~~~-~ad~vV~Ad 158 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIR--NQDYVRVTLDNGQQL-RAKLLIAAD 158 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--cCCeEEEEECCCCEE-EeeEEEEec
Confidence 4455555443 2678999999999987 667888988777653 799999994
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.25 E-value=0.011 Score=55.53 Aligned_cols=68 Identities=18% Similarity=0.121 Sum_probs=48.4
Q ss_pred EEeCCCchHHHHHHhcCC---CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhc
Q 020469 72 YVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVT 143 (326)
Q Consensus 72 yv~~~Gm~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll 143 (326)
.-..+||+++++++++.+ |.+|.+...|++|.- +++.-.-|...||+++ ....||... .|-....+|+
T Consensus 257 ~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev-~sk~VvSNA--t~~~Tf~kLl 327 (561)
T KOG4254|consen 257 GYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEV-RSKIVVSNA--TPWDTFEKLL 327 (561)
T ss_pred cCCCCChhHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEE-EeeeeecCC--chHHHHHHhC
Confidence 345799999999999865 678999999999986 2333345666789865 456666553 4445556675
No 33
>PRK09126 hypothetical protein; Provisional
Probab=97.16 E-value=0.037 Score=52.16 Aligned_cols=48 Identities=27% Similarity=0.270 Sum_probs=36.6
Q ss_pred HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
|.+.+.+..+++|+++++|.+++. +++.|.+.+++|+.+ .+|.||.|+
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 163 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRT--DDDGAQVTLANGRRL-TARLLVAAD 163 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEE--cCCeEEEEEcCCCEE-EeCEEEEeC
Confidence 334444445688999999999986 667788888788654 899999985
No 34
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.07 E-value=0.019 Score=53.76 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=48.3
Q ss_pred CCceEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCC--eEEEccC--CCccccccEEEeccCCCCCc
Q 020469 68 MNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLD--GQSLGQFNGVVASDKNVVSP 137 (326)
Q Consensus 68 ~~~~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~--w~l~~~~--g~~~~~~d~VVla~~~~pap 137 (326)
....|...+|...|++.|.+..++++ ++++|++|.....++. |.|...+ +.....||.||+| .|-.
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIA---tPl~ 186 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIA---TPLQ 186 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEEC---CCcc
Confidence 35678899999999999999999999 9999999943122232 5665443 3333468999999 5554
No 35
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.03 E-value=0.055 Score=50.94 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=35.1
Q ss_pred hHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..|.+++.+.-++ .+++++|.+++. ++++|.|+.++|+.+ .+|.||.|+
T Consensus 115 ~~L~~~~~~~~~~-~~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 163 (388)
T PRK07494 115 RALEARVAELPNI-TRFGDEAESVRP--REDEVTVTLADGTTL-SARLVVGAD 163 (388)
T ss_pred HHHHHHHhcCCCc-EEECCeeEEEEE--cCCeEEEEECCCCEE-EEeEEEEec
Confidence 3444444432234 488999999987 677899988887654 799999995
No 36
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.85 E-value=0.16 Score=47.41 Aligned_cols=50 Identities=20% Similarity=0.123 Sum_probs=37.1
Q ss_pred hHHHHHHhcC---CC-CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 79 NSICKALCHQ---PG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 79 ~~l~~~La~~---l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..+.+.|.+. .+ ++|+++++|++|.. ++++|.+.+.+|+.+ .+|.||.|+
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~~~~vi~ad 159 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPR--HSDHVELTLDDGQQL-RARLLVGAD 159 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEe--cCCeeEEEECCCCEE-EeeEEEEeC
Confidence 3444444432 34 78999999999987 667888888888654 799999884
No 37
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.81 E-value=0.24 Score=46.62 Aligned_cols=48 Identities=27% Similarity=0.257 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
|.+.+.+..+++++++++|.++.. ++++|.|++++|..+ .+|.||.|+
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 165 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVER--TQGSVRVTLDDGETL-TGRLLVAAD 165 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEE--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 344444434678999999999986 667899988887544 799999994
No 38
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.80 E-value=0.16 Score=48.20 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
|.+++.+..+++|+++++|++|+. +++.+.|..++|+.+ .+|.||.|+
T Consensus 117 L~~~~~~~~~v~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~lvIgAD 164 (405)
T PRK08850 117 LLEQVQKQDNVTLLMPARCQSIAV--GESEAWLTLDNGQAL-TAKLVVGAD 164 (405)
T ss_pred HHHHHhcCCCeEEEcCCeeEEEEe--eCCeEEEEECCCCEE-EeCEEEEeC
Confidence 444444433578999999999987 667788888888754 899999995
No 39
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.54 E-value=0.61 Score=44.00 Aligned_cols=38 Identities=32% Similarity=0.395 Sum_probs=32.2
Q ss_pred CeeEcceeEeeEEeecCCCCeEEEcc-CCCccccccEEEecc
Q 020469 91 VESKFGVGVGRFEWLEDKNLWSVSGL-DGQSLGQFNGVVASD 131 (326)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~-~g~~~~~~d~VVla~ 131 (326)
+++++++.|+.++. +++.+.++.. +|+.+ .+|.||-|+
T Consensus 120 v~~~~~~~v~~~~~--~~~~v~v~l~~dG~~~-~a~llVgAD 158 (387)
T COG0654 120 VTLRFGAEVEAVEQ--DGDGVTVTLSFDGETL-DADLLVGAD 158 (387)
T ss_pred cEEEcCceEEEEEE--cCCceEEEEcCCCcEE-ecCEEEECC
Confidence 78999999999998 6677888777 88754 899999995
No 40
>PRK07190 hypothetical protein; Provisional
Probab=96.54 E-value=0.2 Score=48.91 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.++++|+++++|++|+. +++++.+...+|+.+ .++.||.|+
T Consensus 121 ~~Gv~v~~~~~v~~l~~--~~~~v~v~~~~g~~v-~a~~vVgAD 161 (487)
T PRK07190 121 EAGAAVKRNTSVVNIEL--NQAGCLTTLSNGERI-QSRYVIGAD 161 (487)
T ss_pred HCCCEEEeCCEEEEEEE--cCCeeEEEECCCcEE-EeCEEEECC
Confidence 35789999999999987 667777777777654 799999995
No 41
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.45 E-value=0.52 Score=44.49 Aligned_cols=40 Identities=28% Similarity=0.285 Sum_probs=33.4
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+++|+++++|++|+. +++.|.+.+++|+.+ .+|.||.|+
T Consensus 124 ~gv~v~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vI~Ad 163 (403)
T PRK07333 124 LGIDLREATSVTDFET--RDEGVTVTLSDGSVL-EARLLVAAD 163 (403)
T ss_pred CCCEEEcCCEEEEEEE--cCCEEEEEECCCCEE-EeCEEEEcC
Confidence 4688999999999987 667888888788654 799999995
No 42
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.29 E-value=0.84 Score=42.93 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.|.+.+.+..+++++++++|.++.. ++++|.|.+++|+.+ .+|.||.|+
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 165 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQR--DDDGWELTLADGEEI-QAKLVIGAD 165 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEE--cCCeEEEEECCCCEE-EeCEEEEeC
Confidence 3444444333678999999999986 667899988888654 799999995
No 43
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.29 E-value=0.67 Score=43.64 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=33.2
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+++++++++|++++. ++++|.+++++|+.+ .+|.||.|+
T Consensus 126 ~gv~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~a~~vV~Ad 165 (392)
T PRK08773 126 AGVQLHCPARVVALEQ--DADRVRLRLDDGRRL-EAALAIAAD 165 (392)
T ss_pred CCCEEEcCCeEEEEEe--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 4688999999999987 667888888777654 799999994
No 44
>PRK08013 oxidoreductase; Provisional
Probab=96.28 E-value=0.9 Score=43.02 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=35.9
Q ss_pred HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
|.+.+.+.-+++++++++|.+|+. +++++.++..+|+.+ .+|.||-|+
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~i-~a~lvVgAD 164 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAW--GENEAFLTLKDGSML-TARLVVGAD 164 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEe--cCCeEEEEEcCCCEE-EeeEEEEeC
Confidence 334443322578999999999987 667788888888654 899999985
No 45
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.22 E-value=0.88 Score=43.07 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcC
Q 020469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTG 144 (326)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~ 144 (326)
.|.+++.+ .+++|+++++|.+|+. ++++|.|++.+|+.+ .+|.||.|+ -....+.++++
T Consensus 117 ~L~~~~~~-~gv~v~~~~~v~~i~~--~~~~v~v~~~~g~~~-~a~~vVgAd--G~~S~vR~~lg 175 (405)
T PRK05714 117 ALLERLHD-SDIGLLANARLEQMRR--SGDDWLLTLADGRQL-RAPLVVAAD--GANSAVRRLAG 175 (405)
T ss_pred HHHHHHhc-CCCEEEcCCEEEEEEE--cCCeEEEEECCCCEE-EeCEEEEec--CCCchhHHhcC
Confidence 33444433 4678999999999987 667899988888654 899999995 22334444443
No 46
>PRK07045 putative monooxygenase; Reviewed
Probab=96.09 E-value=0.93 Score=42.61 Aligned_cols=45 Identities=29% Similarity=0.334 Sum_probs=32.7
Q ss_pred HHhcCCCCeeEcceeEeeEEeecCCCC--eEEEccCCCccccccEEEecc
Q 020469 84 ALCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 84 ~La~~l~~~i~~~~~V~~i~~~~~~~~--w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+.+..+++++++++|.+|+. ++++ +.|++++|+.+ .+|.||.|+
T Consensus 115 ~~~~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~g~~~-~~~~vIgAD 161 (388)
T PRK07045 115 KLDGLPNVRLRFETSIERIER--DADGTVTSVTLSDGERV-APTVLVGAD 161 (388)
T ss_pred HHhcCCCeeEEeCCEEEEEEE--CCCCcEEEEEeCCCCEE-ECCEEEECC
Confidence 333334578999999999987 3333 57888788654 789999884
No 47
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.00 E-value=0.13 Score=49.27 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=35.5
Q ss_pred CCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 76 PGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 76 ~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.-+.......++..+++|+.+++|.+|.. +++.+.....+|+.+ .+|.||.|+
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~--~~g~v~~v~~~g~~i-~A~~VI~A~ 160 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQ--RDGKVVGVEADGDVI-EAKTVILAD 160 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEE--eCCEEEEEEcCCcEE-ECCEEEEEe
Confidence 33444444445556889999999999986 445554333455554 799999995
No 48
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.98 E-value=1.2 Score=42.17 Aligned_cols=40 Identities=23% Similarity=0.100 Sum_probs=29.8
Q ss_pred CCeeEcceeEeeEEeecCCCCeEEEccC-CC-ccccccEEEecc
Q 020469 90 GVESKFGVGVGRFEWLEDKNLWSVSGLD-GQ-SLGQFNGVVASD 131 (326)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~~~-g~-~~~~~d~VVla~ 131 (326)
+++++++++|.+|+. +++++.++..+ ++ ....+|.||.|+
T Consensus 136 ~v~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~i~adlvIgAD 177 (415)
T PRK07364 136 NITWLCPAEVVSVEY--QQDAATVTLEIEGKQQTLQSKLVVAAD 177 (415)
T ss_pred CcEEEcCCeeEEEEe--cCCeeEEEEccCCcceEEeeeEEEEeC
Confidence 578999999999986 66778887653 22 123799999995
No 49
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.97 E-value=1.4 Score=41.36 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=36.5
Q ss_pred HHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+++.+..+++|+++++|.+++. +++++.++.++|+.+ .+|.||.|+
T Consensus 117 ~~~~~~~~~i~i~~~~~v~~~~~--~~~~~~v~~~~g~~~-~~~lvIgAD 163 (384)
T PRK08849 117 WQQFAQYPNLTLMCPEKLADLEF--SAEGNRVTLESGAEI-EAKWVIGAD 163 (384)
T ss_pred HHHHHhCCCeEEECCCceeEEEE--cCCeEEEEECCCCEE-EeeEEEEec
Confidence 34444434578999999999987 667788988888654 799999995
No 50
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.91 E-value=0.012 Score=49.97 Aligned_cols=52 Identities=21% Similarity=0.384 Sum_probs=38.1
Q ss_pred CchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 77 GMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 77 Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
-+....+.+++..+.+|+++++|.+|++ ++++|.|++.++..+ .+|.||+|+
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~--~~~~w~v~~~~~~~~-~a~~VVlAt 134 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRR--DGDGWTVTTRDGRTI-RADRVVLAT 134 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEE--ETTTEEEEETTS-EE-EEEEEEE--
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEE--eccEEEEEEEeccee-eeeeEEEee
Confidence 3445566677777778999999999998 667799999988555 699999994
No 51
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.44 E-value=2.3 Score=39.83 Aligned_cols=47 Identities=23% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHhcCCC-CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 80 SICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 80 ~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.|.+++.+ .+ ++++ +++|.+|.. ++++|.+.+.+|+.+ .+|.||.|+
T Consensus 116 ~L~~~~~~-~~~v~~~-~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~ad 163 (388)
T PRK07608 116 ALWAALRF-QPNLTWF-PARAQGLEV--DPDAATLTLADGQVL-RADLVVGAD 163 (388)
T ss_pred HHHHHHHh-CCCcEEE-cceeEEEEe--cCCeEEEEECCCCEE-EeeEEEEeC
Confidence 34444443 34 7777 999999986 667889988888544 799999984
No 52
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.39 E-value=2.4 Score=39.72 Aligned_cols=37 Identities=8% Similarity=-0.071 Sum_probs=30.5
Q ss_pred CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
++++++++|.+|.. +++++.|.++++ .+ ++|.||.|+
T Consensus 120 v~~~~~~~v~~i~~--~~~~v~v~~~~~-~~-~adlvIgAD 156 (374)
T PRK06617 120 ITLIDNNQYQEVIS--HNDYSIIKFDDK-QI-KCNLLIICD 156 (374)
T ss_pred cEEECCCeEEEEEE--cCCeEEEEEcCC-EE-eeCEEEEeC
Confidence 67899999999987 667788888766 43 799999995
No 53
>PRK06847 hypothetical protein; Provisional
Probab=94.94 E-value=1.8 Score=40.42 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=33.3
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+++|+++++|.+|+. +++++.+.+.+|+.+ .+|.||.|+
T Consensus 120 ~gv~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~ad~vI~Ad 159 (375)
T PRK06847 120 AGADVRLGTTVTAIEQ--DDDGVTVTFSDGTTG-RYDLVVGAD 159 (375)
T ss_pred hCCEEEeCCEEEEEEE--cCCEEEEEEcCCCEE-EcCEEEECc
Confidence 4678999999999987 667788888888654 799999995
No 54
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=94.90 E-value=0.069 Score=51.37 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=45.2
Q ss_pred EEeCCCchHHHHHHh---cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEec
Q 020469 72 YVGVPGMNSICKALC---HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (326)
Q Consensus 72 yv~~~Gm~~l~~~La---~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla 130 (326)
+....||+.|++.|+ +..|.+++++++|.+|...+++..+.|.+.+|+.+ .++.||+.
T Consensus 225 ~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i-~a~~VV~~ 285 (443)
T PTZ00363 225 IYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVA-KCKLVICD 285 (443)
T ss_pred eeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEE-ECCEEEEC
Confidence 344899999999997 55678999999999998721122367888888765 79999987
No 55
>PRK06834 hypothetical protein; Provisional
Probab=94.80 E-value=2.6 Score=41.13 Aligned_cols=41 Identities=29% Similarity=0.263 Sum_probs=33.7
Q ss_pred CCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..+++|+++++|.+|+. +++++.++..+|+.+ .+|.||.|+
T Consensus 112 ~~gv~i~~~~~v~~v~~--~~~~v~v~~~~g~~i-~a~~vVgAD 152 (488)
T PRK06834 112 ELGVPIYRGREVTGFAQ--DDTGVDVELSDGRTL-RAQYLVGCD 152 (488)
T ss_pred hCCCEEEcCCEEEEEEE--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 35788999999999987 667888887777544 799999995
No 56
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=94.35 E-value=5.1 Score=38.42 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=36.4
Q ss_pred HHHHHHhcCC--CCeeEcceeEeeEEee-----cCCCCeEEEccCCCccccccEEEecc
Q 020469 80 SICKALCHQP--GVESKFGVGVGRFEWL-----EDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 80 ~l~~~La~~l--~~~i~~~~~V~~i~~~-----~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.|.+++.+.. +++++++++|.+|+.. .+++++.++..+|+.+ .+|.||-|+
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i-~a~llVgAD 179 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVL-YTKLLIGAD 179 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEE-EeeEEEEec
Confidence 3455555433 3789999999999741 1245688888888764 899999995
No 57
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=94.24 E-value=3.9 Score=40.45 Aligned_cols=48 Identities=29% Similarity=0.294 Sum_probs=34.3
Q ss_pred HHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEcc--CCC-ccccccEEEecc
Q 020469 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQ-SLGQFNGVVASD 131 (326)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~g~-~~~~~d~VVla~ 131 (326)
.+.+.+..+++|+++++|++|+. +++++.++.. +|+ ....+|.||-|+
T Consensus 120 ~~~~~~~~gv~v~~g~~v~~i~~--~~~~v~v~~~~~~G~~~~i~ad~vVgAD 170 (538)
T PRK06183 120 RAGLARFPHVRVRFGHEVTALTQ--DDDGVTVTLTDADGQRETVRARYVVGCD 170 (538)
T ss_pred HHHHHhCCCcEEEcCCEEEEEEE--cCCeEEEEEEcCCCCEEEEEEEEEEecC
Confidence 34444434688999999999997 6677887664 452 223789999985
No 58
>PRK06184 hypothetical protein; Provisional
Probab=94.18 E-value=2.1 Score=41.85 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=33.9
Q ss_pred HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEc---cCCCccccccEEEecc
Q 020469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQSLGQFNGVVASD 131 (326)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~---~~g~~~~~~d~VVla~ 131 (326)
|.+++.+ .+++|+++++|.+|+. +++++.+.. ++++. ..+|.||.|+
T Consensus 115 L~~~l~~-~gv~i~~~~~v~~i~~--~~~~v~v~~~~~~~~~~-i~a~~vVgAD 164 (502)
T PRK06184 115 LRERLAE-LGHRVEFGCELVGFEQ--DADGVTARVAGPAGEET-VRARYLVGAD 164 (502)
T ss_pred HHHHHHH-CCCEEEeCcEEEEEEE--cCCcEEEEEEeCCCeEE-EEeCEEEECC
Confidence 4444443 4788999999999987 666777765 44444 3799999995
No 59
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=94.05 E-value=0.11 Score=48.55 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=52.0
Q ss_pred CceEEeCCCchHHHHHHhcCC---CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCc
Q 020469 69 NKKYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSP 137 (326)
Q Consensus 69 ~~~yv~~~Gm~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap 137 (326)
...|--...-+.|++.|..++ +++|+++++|.+|.. ++.+..|.+.+|+.+ .+|.+|+|+-+...|
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~--~~~~f~l~t~~g~~i-~~d~lilAtGG~S~P 169 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEK--DDSGFRLDTSSGETV-KCDSLILATGGKSWP 169 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEe--cCceEEEEcCCCCEE-EccEEEEecCCcCCC
Confidence 344444567778888887664 689999999999997 667889999898644 799999998776666
No 60
>PRK06185 hypothetical protein; Provisional
Probab=93.97 E-value=5.7 Score=37.50 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=28.1
Q ss_pred CCCeEEeeCCC------CCCChhHHHHHHHHHHHHHHhhh
Q 020469 290 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 290 ~~~l~~aGD~~------~g~~vegA~~SG~~aA~~l~~~l 323 (326)
.+++.++||.. .|-+++-|++++..+|+.|...+
T Consensus 283 ~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~ 322 (407)
T PRK06185 283 RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPL 322 (407)
T ss_pred CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHh
Confidence 36899999973 46699999999999999887654
No 61
>PRK10015 oxidoreductase; Provisional
Probab=93.92 E-value=2.6 Score=40.38 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=29.2
Q ss_pred CCCeEEeeCC---C-----CCCChhHHHHHHHHHHHHHHhhhc
Q 020469 290 KRRLAICGDF---C-----VSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 290 ~~~l~~aGD~---~-----~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
.+++.++||. + .+.+|.-|+.||+.||+.+.+.+.
T Consensus 294 ~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~ 336 (429)
T PRK10015 294 NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKE 336 (429)
T ss_pred cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHh
Confidence 4689999996 2 457899999999999999987764
No 62
>PRK06996 hypothetical protein; Provisional
Probab=93.37 E-value=7.2 Score=36.81 Aligned_cols=47 Identities=9% Similarity=-0.094 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCC---CccccccEEEecc
Q 020469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG---QSLGQFNGVVASD 131 (326)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g---~~~~~~d~VVla~ 131 (326)
|.+.+.+ .+++++++++|.+++. ++++|.++..+| +. ..+|.||-|+
T Consensus 121 L~~~~~~-~g~~~~~~~~v~~~~~--~~~~v~v~~~~~~g~~~-i~a~lvIgAD 170 (398)
T PRK06996 121 LARAVRG-TPVRWLTSTTAHAPAQ--DADGVTLALGTPQGART-LRARIAVQAE 170 (398)
T ss_pred HHHHHHh-CCCEEEcCCeeeeeee--cCCeEEEEECCCCcceE-EeeeEEEECC
Confidence 3444433 4678999999999986 677899987654 33 4799999995
No 63
>PRK08244 hypothetical protein; Provisional
Probab=93.23 E-value=5 Score=39.16 Aligned_cols=52 Identities=23% Similarity=0.096 Sum_probs=35.6
Q ss_pred chHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEcc--CCCccccccEEEecc
Q 020469 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (326)
Q Consensus 78 m~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~g~~~~~~d~VVla~ 131 (326)
+..+....++..+++|+++++|.+|+. +++++.+... +|+...++|.||.|+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~i~a~~vVgAD 155 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQ--DGDGVEVVVRGPDGLRTLTSSYVVGAD 155 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEE--cCCeEEEEEEeCCccEEEEeCEEEECC
Confidence 444444444556788999999999987 5666766543 453223799999995
No 64
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=93.19 E-value=5.8 Score=35.18 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=35.0
Q ss_pred CCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCC-CccccccEEEecc
Q 020469 75 VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG-QSLGQFNGVVASD 131 (326)
Q Consensus 75 ~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g-~~~~~~d~VVla~ 131 (326)
..-+.......+...+++++++++|.++.. +++++.+...++ ..+ .+|.||.|+
T Consensus 90 r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~-~a~~vv~a~ 144 (295)
T TIGR02032 90 RDAFDEQLAERAQEAGAELRLGTTVLDVEI--HDDRVVVIVRGGEGTV-TAKIVIGAD 144 (295)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCcEEeeEEE--eCCEEEEEEcCccEEE-EeCEEEECC
Confidence 333433333333446788999999999987 556666654433 333 799999994
No 65
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=92.88 E-value=7 Score=38.73 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEc--cCCCccccccEEEecc
Q 020469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG--LDGQSLGQFNGVVASD 131 (326)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~--~~g~~~~~~d~VVla~ 131 (326)
|.+++.+..+++|+++++|.+++. ++++|.+.. .+|.....+|.||.|+
T Consensus 131 L~~~~~~~~~v~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~i~ad~vVgAD 181 (547)
T PRK08132 131 LVERAQALPNIDLRWKNKVTGLEQ--HDDGVTLTVETPDGPYTLEADWVIACD 181 (547)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEE--cCCEEEEEEECCCCcEEEEeCEEEECC
Confidence 444554433578999999999987 666776654 3443223799999995
No 66
>PRK06126 hypothetical protein; Provisional
Probab=92.72 E-value=5.6 Score=39.33 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=29.6
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEcc---CCCc-cccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQS-LGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~---~g~~-~~~~d~VVla~ 131 (326)
.+++|+++++|.+|.. +++++.+... +|+. ...+|.||.|+
T Consensus 140 ~~v~i~~~~~v~~i~~--~~~~v~v~~~~~~~g~~~~i~ad~vVgAD 184 (545)
T PRK06126 140 PGVTLRYGHRLTDFEQ--DADGVTATVEDLDGGESLTIRADYLVGCD 184 (545)
T ss_pred CCceEEeccEEEEEEE--CCCeEEEEEEECCCCcEEEEEEEEEEecC
Confidence 3578999999999987 5666766542 3531 23789999995
No 67
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.33 E-value=0.18 Score=46.31 Aligned_cols=49 Identities=27% Similarity=0.368 Sum_probs=37.7
Q ss_pred chHHHHHHhcC---CCCeeEcceeEeeEEeecCCCCeE-EEccCCCccccccEEEec
Q 020469 78 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 130 (326)
Q Consensus 78 m~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w~-l~~~~g~~~~~~d~VVla 130 (326)
...+.+.|.+. .|++|+.+++|.+|.. ++++|. |.+.+|+ + .+|.||+|
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~v~gv~~~~g~-i-~ad~vV~a 198 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV--DGGRVTGVRTSDGE-I-RADRVVLA 198 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE--ETTEEEEEEETTEE-E-EECEEEE-
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh--cccccccccccccc-c-ccceeEec
Confidence 45555555543 5789999999999998 778898 9999986 5 79999999
No 68
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=92.33 E-value=0.2 Score=47.67 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=40.4
Q ss_pred ceEEeCCCchHHHHHHhcC---CCCeeEcceeEeeEEeecCCCC-eEEEccCCCccccccEEEeccCCCCCcc
Q 020469 70 KKYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPR 138 (326)
Q Consensus 70 ~~yv~~~Gm~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~-w~l~~~~g~~~~~~d~VVla~~~~pap~ 138 (326)
..|-...-..++.+.|.+. ++++|+++++|.+|.. ++++ +.|.+++++.+ .+|+||+|+=+...|+
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~f~v~~~~~~~~-~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK--KEDGVFGVKTKNGGEY-EADAVILATGGKSYPK 169 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE--ETTEEEEEEETTTEEE-EESEEEE----SSSGG
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee--cCCceeEeeccCcccc-cCCEEEEecCCCCccc
Confidence 3455555667777777553 4789999999999987 4455 88988555554 8999999977666665
No 69
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=92.28 E-value=11 Score=38.28 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=26.7
Q ss_pred CeeEcceeEeeEEeecC-CCCeEEEcc------CCC-ccccccEEEecc
Q 020469 91 VESKFGVGVGRFEWLED-KNLWSVSGL------DGQ-SLGQFNGVVASD 131 (326)
Q Consensus 91 ~~i~~~~~V~~i~~~~~-~~~w~l~~~------~g~-~~~~~d~VVla~ 131 (326)
++++++++|++++.+.+ +..+.++.. +|+ ...++|.||-|+
T Consensus 158 v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaD 206 (634)
T PRK08294 158 LEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCD 206 (634)
T ss_pred eEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECC
Confidence 46789999999986211 134666553 342 223799999985
No 70
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=91.63 E-value=0.37 Score=39.26 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=28.6
Q ss_pred cceeEeeEEeecCCCCeEEEccCCCccccccEEEec
Q 020469 95 FGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (326)
Q Consensus 95 ~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla 130 (326)
...+|..|.. .+++|.|.+.+|..+ .||+||||
T Consensus 120 ~~~~V~~i~~--~~~~~~v~~~~g~~~-~~d~VvLa 152 (156)
T PF13454_consen 120 VRAEVVDIRR--DDDGYRVVTADGQSI-RADAVVLA 152 (156)
T ss_pred EeeEEEEEEE--cCCcEEEEECCCCEE-EeCEEEEC
Confidence 5679999998 778899999999765 89999999
No 71
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=91.56 E-value=11 Score=35.74 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=42.6
Q ss_pred CceEEe-CCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCC-CccccccEEEecc
Q 020469 69 NKKYVG-VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG-QSLGQFNGVVASD 131 (326)
Q Consensus 69 ~~~yv~-~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g-~~~~~~d~VVla~ 131 (326)
...|+. +.-+.......|+..|++++.+++|..+.. +++++.+....+ .++ .++.||.|+
T Consensus 87 ~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~--~~~~~~~~~~~~~~e~-~a~~vI~Ad 148 (396)
T COG0644 87 GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIR--EDDGVVVGVRAGDDEV-RAKVVIDAD 148 (396)
T ss_pred CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEE--eCCcEEEEEEcCCEEE-EcCEEEECC
Confidence 345555 566666666667778999999999999997 566665544433 232 789999995
No 72
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=90.80 E-value=0.36 Score=45.34 Aligned_cols=50 Identities=20% Similarity=0.420 Sum_probs=37.2
Q ss_pred hHHHHHHhcCC--CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 79 NSICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 79 ~~l~~~La~~l--~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..+++.|++.+ +++|+++++|.+|+. ++++|.|.+.+|..+ .+|.||+|.
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~--~~~~~~v~t~~g~~~-~a~~vV~a~ 186 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLER--DGEGWQLLDANGEVI-AASVVVLAN 186 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEE--cCCeEEEEeCCCCEE-EcCEEEEcC
Confidence 33444444422 678999999999987 667899988888644 799999993
No 73
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=90.52 E-value=15 Score=34.34 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=29.1
Q ss_pred cCCCeEEeeCC------CCCCChhHHHHHHHHHHHHHHhhh
Q 020469 289 VKRRLAICGDF------CVSPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 289 ~~~~l~~aGD~------~~g~~vegA~~SG~~aA~~l~~~l 323 (326)
..+++.+.||. ..|.++.-|+++|..+|+.|.+.+
T Consensus 260 ~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~ 300 (388)
T TIGR01790 260 LPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQAL 300 (388)
T ss_pred cCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHh
Confidence 45689999995 457799999999999999996654
No 74
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=90.47 E-value=11 Score=34.12 Aligned_cols=48 Identities=25% Similarity=0.216 Sum_probs=33.9
Q ss_pred hHHHHHHhc---CCCCeeEcceeEeeEEeecCCCCe-EEEccCCCccccccEEEec
Q 020469 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 130 (326)
Q Consensus 79 ~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w-~l~~~~g~~~~~~d~VVla 130 (326)
..++..|++ ..+++++.+++|.+|.. ++++| .|.+.+| .+ .+|.||+|
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~--~~~~~~~v~~~~g-~~-~a~~vV~a 188 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEI--RGEKVTAIVTPSG-DV-QADQVVLA 188 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEe--eCCEEEEEEcCCC-EE-ECCEEEEc
Confidence 334444443 34688999999999987 55655 4666666 33 79999999
No 75
>PRK11445 putative oxidoreductase; Provisional
Probab=89.95 E-value=16 Score=33.81 Aligned_cols=34 Identities=15% Similarity=0.026 Sum_probs=29.1
Q ss_pred CCCeEEeeCC------CCCCChhHHHHHHHHHHHHHHhhh
Q 020469 290 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 290 ~~~l~~aGD~------~~g~~vegA~~SG~~aA~~l~~~l 323 (326)
.+++.+.||. +.|.++.-|++||..+|+.|.+.+
T Consensus 263 ~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~ 302 (351)
T PRK11445 263 KDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP 302 (351)
T ss_pred CCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc
Confidence 4689999997 457899999999999999997653
No 76
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=89.65 E-value=0.82 Score=41.81 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=26.9
Q ss_pred CCeEEeeCCC------CCCChhHHHHHHHHHHHHHHhhh
Q 020469 291 RRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 291 ~~l~~aGD~~------~g~~vegA~~SG~~aA~~l~~~l 323 (326)
+++.+.||.. .|.++.-|+.+|..+|+.|...+
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~ 329 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAAL 329 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHh
Confidence 5999999974 46689999999999999987654
No 77
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=89.56 E-value=0.72 Score=43.86 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHHHHhcCCC-CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 80 SICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 80 ~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.|.+.|.+.+. ..++++++|.+|+. ++++|.+.+++|..+ .+|.||.|+
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~ad~vVgAD 155 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEE--QAEEVQVLFTDGTEY-RCDLLIGAD 155 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEe--cCCcEEEEEcCCCEE-EeeEEEECC
Confidence 46777777663 46899999999987 677899998888654 799999995
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.55 E-value=0.37 Score=46.69 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=38.7
Q ss_pred ceEEeCCCchHHHHHHhcCCCCe--eEcceeEeeEEeecCCCCeEEEccCCC-c--cccccEEEecc
Q 020469 70 KKYVGVPGMNSICKALCHQPGVE--SKFGVGVGRFEWLEDKNLWSVSGLDGQ-S--LGQFNGVVASD 131 (326)
Q Consensus 70 ~~yv~~~Gm~~l~~~La~~l~~~--i~~~~~V~~i~~~~~~~~w~l~~~~g~-~--~~~~d~VVla~ 131 (326)
+.|....-+....+..++..++. |+++++|.+|++ .+++|.|.+.++. . ...||+||+|+
T Consensus 105 ~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~~~~w~V~~~~~~~~~~~~~~d~VIvAt 169 (461)
T PLN02172 105 RRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEP--VDGKWRVQSKNSGGFSKDEIFDAVVVCN 169 (461)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEee--cCCeEEEEEEcCCCceEEEEcCEEEEec
Confidence 44543333333344445445544 899999999997 6678999875432 1 13689999994
No 79
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=89.24 E-value=16 Score=34.50 Aligned_cols=53 Identities=8% Similarity=0.154 Sum_probs=39.3
Q ss_pred eEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEec
Q 020469 71 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (326)
Q Consensus 71 ~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla 130 (326)
....+.|.+++.+.|++..+++|++++.+..++. .+++|.+.. + .+ .+.||.|
T Consensus 190 q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~--~~~~~~~~~--~-~~--~~~vi~T 242 (377)
T TIGR00031 190 QGLPKGGYTKLFEKMLDHPLIDVKLNCHINLLKD--KDSQLHFAN--K-AI--RKPVIYT 242 (377)
T ss_pred cccccccHHHHHHHHHhcCCCEEEeCCccceeec--cccceeecc--c-cc--cCcEEEe
Confidence 3456889999999999877788999998888875 445576643 2 22 2789998
No 80
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=89.15 E-value=0.78 Score=43.77 Aligned_cols=64 Identities=16% Similarity=0.317 Sum_probs=44.1
Q ss_pred chHHHHHHhcCCCCeeEcceeEeeEEeecCCC-CeEEEccCCCc-cccccEEEeccCCCCCcchhhhcCCC
Q 020469 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQS-LGQFNGVVASDKNVVSPRFRDVTGRP 146 (326)
Q Consensus 78 m~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~-~w~l~~~~g~~-~~~~d~VVla~~~~pap~~~~ll~~~ 146 (326)
+.++++.+.+. +++|+++++|..|++ .++ .+.+.+.+|+. + .++.||.+. |.-+..++++.+.+
T Consensus 156 t~~l~e~a~~~-g~~i~ln~eV~~i~~--~~dg~~~~~~~~g~~~~-~ak~Vin~A-Gl~Ad~la~~~g~~ 221 (429)
T COG0579 156 TRALAEEAQAN-GVELRLNTEVTGIEK--QSDGVFVLNTSNGEETL-EAKFVINAA-GLYADPLAQMAGIP 221 (429)
T ss_pred HHHHHHHHHHc-CCEEEecCeeeEEEE--eCCceEEEEecCCcEEE-EeeEEEECC-chhHHHHHHHhCCC
Confidence 34455555443 788999999999998 455 56677778864 4 789999983 33455566666644
No 81
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=88.96 E-value=0.36 Score=47.60 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=45.0
Q ss_pred CCCCceEEeCCCchHHHHHHhcCCC--CeeEcceeEeeEEeecC---CCCeEEEccC-CC-ccccccEEEecc
Q 020469 66 DGMNKKYVGVPGMNSICKALCHQPG--VESKFGVGVGRFEWLED---KNLWSVSGLD-GQ-SLGQFNGVVASD 131 (326)
Q Consensus 66 ~~~~~~yv~~~Gm~~l~~~La~~l~--~~i~~~~~V~~i~~~~~---~~~w~l~~~~-g~-~~~~~d~VVla~ 131 (326)
+++.+.|....-|..-.+..|+..+ ..|+++|+|.+|++..+ .++|.|++.+ |+ ....||+||+|+
T Consensus 74 p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vvvat 146 (531)
T PF00743_consen 74 PEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVAT 146 (531)
T ss_dssp CCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcC
Confidence 3445667666666666666666554 46999999999997322 2469998754 32 224699999995
No 82
>PLN02463 lycopene beta cyclase
Probab=87.34 E-value=29 Score=33.52 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=29.5
Q ss_pred CCCeEEeeCC------CCCCChhHHHHHHHHHHHHHHhhhc
Q 020469 290 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 290 ~~~l~~aGD~------~~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
..++...||. ..|.+|-.++++|..+|+.|.+.++
T Consensus 293 ~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~ 333 (447)
T PLN02463 293 PQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLG 333 (447)
T ss_pred CCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHh
Confidence 4578888885 4577999999999999999988775
No 83
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=87.32 E-value=1.3 Score=43.26 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=40.0
Q ss_pred hHHHHHHhcCCCCeeEcceeEeeEEeecC-CCCeEEE---ccCCC--ccccccEEEeccCCCCCcchhhhcC
Q 020469 79 NSICKALCHQPGVESKFGVGVGRFEWLED-KNLWSVS---GLDGQ--SLGQFNGVVASDKNVVSPRFRDVTG 144 (326)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~-~~~w~l~---~~~g~--~~~~~d~VVla~~~~pap~~~~ll~ 144 (326)
.+|.+.+.+..+++|+++++|..|++ . +++|.+. +.+|+ .+ .+|.||+|. +.-+..+++.++
T Consensus 188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~d~~w~v~v~~t~~g~~~~i-~Ad~VV~AA-GawS~~La~~~G 255 (497)
T PRK13339 188 RKLAKHLESHPNAQVKYNHEVVDLER--LSDGGWEVTVKDRNTGEKREQ-VADYVFIGA-GGGAIPLLQKSG 255 (497)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEE--CCCCCEEEEEEecCCCceEEE-EcCEEEECC-CcchHHHHHHcC
Confidence 45566654434688999999999987 4 6789886 33442 33 799999983 222333444444
No 84
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=87.10 E-value=1.3 Score=41.74 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=44.9
Q ss_pred eEEeCCCchHHHHHHhcC---CCCeeEcceeEeeEEeecCCCCeEEEccCC-CccccccEEEeccCCCCCcch
Q 020469 71 KYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDG-QSLGQFNGVVASDKNVVSPRF 139 (326)
Q Consensus 71 ~yv~~~Gm~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g-~~~~~~d~VVla~~~~pap~~ 139 (326)
.|-...--+++.+.|... .+++|+++++|.+|+ + ++|.+.+.++ ..+ .+|+||+|+=+.+.|++
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~---~-~~~~v~~~~~~~~~-~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ---G-GTLRFETPDGQSTI-EADAVVLALGGASWSQL 145 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe---C-CcEEEEECCCceEE-ecCEEEEcCCCcccccc
Confidence 343345666677666543 579999999999993 2 3588876443 233 79999999887777764
No 85
>PRK07236 hypothetical protein; Provisional
Probab=86.68 E-value=1.4 Score=41.48 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=42.3
Q ss_pred CchHHHHHHhcCCC-CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 77 GMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 77 Gm~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+...+.+.|.+.++ .+|+++++|++|+. +++++.+.+.+|+.+ .+|.||.|+
T Consensus 98 ~~~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vIgAD 150 (386)
T PRK07236 98 SWNVLYRALRAAFPAERYHLGETLVGFEQ--DGDRVTARFADGRRE-TADLLVGAD 150 (386)
T ss_pred CHHHHHHHHHHhCCCcEEEcCCEEEEEEe--cCCeEEEEECCCCEE-EeCEEEECC
Confidence 45677788877665 56999999999987 667899988888764 899999995
No 86
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=84.76 E-value=1.9 Score=41.64 Aligned_cols=39 Identities=33% Similarity=0.389 Sum_probs=32.6
Q ss_pred eeccCCCeEEeeCCCC---CCChhHHHHHHHHHHHHHHhhhc
Q 020469 286 LWDVKRRLAICGDFCV---SPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 286 ~~~~~~~l~~aGD~~~---g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
...+..+++++|||.. -++||+|..||+.+|+.|++.+.
T Consensus 423 ~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~ 464 (485)
T COG3349 423 QKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLG 464 (485)
T ss_pred CCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhh
Confidence 3456889999999964 36999999999999999987653
No 87
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.17 E-value=1.5 Score=44.63 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=37.1
Q ss_pred HHHHHHhcCC--CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 80 SICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 80 ~l~~~La~~l--~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+++.|++.. +++|+++++|.+|+. .+++|.|.+.+|..+ .+|.||+|.
T Consensus 409 ~l~~aL~~~a~~Gv~i~~~~~V~~i~~--~~~~~~v~t~~g~~~-~ad~VV~A~ 459 (662)
T PRK01747 409 ELCRALLALAGQQLTIHFGHEVARLER--EDDGWQLDFAGGTLA-SAPVVVLAN 459 (662)
T ss_pred HHHHHHHHhcccCcEEEeCCEeeEEEE--eCCEEEEEECCCcEE-ECCEEEECC
Confidence 4555555443 478999999999987 567899988777543 699999993
No 88
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=83.59 E-value=2.8 Score=39.29 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=34.5
Q ss_pred hcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 86 a~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+..+++++++++|.+|.. +++.+.+.+.+|+.+ .+|.||+|.
T Consensus 193 l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~vI~a~ 235 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEK--TDSGIRATLDSGRSI-EVDAVIAAA 235 (377)
T ss_pred HHhCCCEEEECCeEEEEEc--cCCEEEEEEcCCcEE-ECCEEEECc
Confidence 3446788999999999986 556788888888764 799999994
No 89
>PRK07538 hypothetical protein; Provisional
Probab=83.56 E-value=41 Score=31.84 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=26.3
Q ss_pred CCCeEEeeCCC------CCCChhHHHHHHHHHHHHHHh
Q 020469 290 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTE 321 (326)
Q Consensus 290 ~~~l~~aGD~~------~g~~vegA~~SG~~aA~~l~~ 321 (326)
.+++.+.||.. .|.++.-|++.|..+|+.|..
T Consensus 296 ~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~ 333 (413)
T PRK07538 296 RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAA 333 (413)
T ss_pred CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 46899999974 356899999999999988753
No 90
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=82.89 E-value=1.8 Score=30.59 Aligned_cols=39 Identities=26% Similarity=0.212 Sum_probs=27.3
Q ss_pred chHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCC
Q 020469 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG 118 (326)
Q Consensus 78 m~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g 118 (326)
+....+...+..++++++++.|.+|.. ++++++|.++||
T Consensus 42 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~~~V~~~~g 80 (80)
T PF00070_consen 42 AAKILEEYLRKRGVEVHTNTKVKEIEK--DGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEE--ETTSEEEEEETS
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEE--eCCEEEEEEecC
Confidence 333444444446899999999999997 555577777665
No 91
>PRK06753 hypothetical protein; Provisional
Probab=82.62 E-value=3 Score=38.84 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=39.1
Q ss_pred hHHHHHHhcCCC-CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 79 NSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 79 ~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..|-+.|.+.+. .+|+++++|++|+. +++++.+++++|+.+ .+|.||-|+
T Consensus 98 ~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~~~~vigad 148 (373)
T PRK06753 98 QTLIDIIKSYVKEDAIFTGKEVTKIEN--ETDKVTIHFADGESE-AFDLCIGAD 148 (373)
T ss_pred HHHHHHHHHhCCCceEEECCEEEEEEe--cCCcEEEEECCCCEE-ecCEEEECC
Confidence 456666666543 56999999999986 677899988888654 799999985
No 92
>PRK07588 hypothetical protein; Provisional
Probab=81.73 E-value=2.8 Score=39.40 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=33.1
Q ss_pred CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+++|+++++|.+|+. ++++|.|.+++|+.. .+|.||-|+
T Consensus 116 ~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~~d~vIgAD 154 (391)
T PRK07588 116 QVETIFDDSIATIDE--HRDGVRVTFERGTPR-DFDLVIGAD 154 (391)
T ss_pred CeEEEeCCEEeEEEE--CCCeEEEEECCCCEE-EeCEEEECC
Confidence 468999999999987 677899998888754 799999985
No 93
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=80.55 E-value=3.3 Score=39.04 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=36.2
Q ss_pred hHHHHHHhc---CCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 79 ~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..+.+.|.+ ..+++++++++|.+|.. .+++|.|.+.+|+ + .+|.||+|.
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~~~~g~-i-~ad~vV~A~ 200 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDE--HANGVVVRTTQGE-Y-EARTLINCA 200 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEe--cCCeEEEEECCCE-E-EeCEEEECC
Confidence 445555543 34788999999999987 5667888877763 3 799999983
No 94
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=80.43 E-value=3.1 Score=40.71 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=30.6
Q ss_pred CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
++|+++++|.+|.. .+++.|.|.+.+|. + .+|.||+|.
T Consensus 232 v~i~~~t~V~~I~~-~~~~~~~V~T~~G~-i-~A~~VVvaA 269 (497)
T PTZ00383 232 ISINLNTEVLNIER-SNDSLYKIHTNRGE-I-RARFVVVSA 269 (497)
T ss_pred EEEEeCCEEEEEEe-cCCCeEEEEECCCE-E-EeCEEEECc
Confidence 67899999999987 22567999888774 3 799999994
No 95
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=80.04 E-value=3.4 Score=36.88 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..++++++ +.|.+|++ +++.|.+.+.+|..+ .||.||+|+
T Consensus 69 ~~gv~~~~-~~v~~v~~--~~~~~~v~~~~~~~~-~~d~liiAt 108 (300)
T TIGR01292 69 KFGAEIIY-EEVIKVDL--SDRPFKVKTGDGKEY-TAKAVIIAT 108 (300)
T ss_pred HcCCeEEE-EEEEEEEe--cCCeeEEEeCCCCEE-EeCEEEECC
Confidence 35677888 89999987 667899987777654 899999995
No 96
>PRK08163 salicylate hydroxylase; Provisional
Probab=79.55 E-value=4.2 Score=38.16 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=35.5
Q ss_pred HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
|.+.+.+..+++++++++|.++.. +++++.+.+.+|+.+ .+|.||.|+
T Consensus 115 L~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vV~Ad 162 (396)
T PRK08163 115 LLEAVLDHPLVEFRTSTHVVGIEQ--DGDGVTVFDQQGNRW-TGDALIGCD 162 (396)
T ss_pred HHHHHHhcCCcEEEeCCEEEEEec--CCCceEEEEcCCCEE-ecCEEEECC
Confidence 344433322378999999999986 667788888888654 799999994
No 97
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=79.28 E-value=3.4 Score=39.92 Aligned_cols=47 Identities=21% Similarity=0.132 Sum_probs=34.8
Q ss_pred hHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..|.+.+ +..|++|+.+++|.+|+. ++.|.|.+++|. + .+|.||+|+
T Consensus 187 ~~L~~~a-~~~Gv~i~~~t~V~~i~~---~~~~~v~t~~g~-v-~A~~VV~At 233 (460)
T TIGR03329 187 RGLRRVA-LELGVEIHENTPMTGLEE---GQPAVVRTPDGQ-V-TADKVVLAL 233 (460)
T ss_pred HHHHHHH-HHcCCEEECCCeEEEEee---CCceEEEeCCcE-E-ECCEEEEcc
Confidence 4444433 346789999999999974 356888887775 3 799999994
No 98
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=78.75 E-value=3.7 Score=38.24 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+++++++++|.+|.. ++++|.|.+++|. + .+|.||+|+
T Consensus 162 ~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~-~-~a~~vV~A~ 200 (376)
T PRK11259 162 AGAELLFNEPVTAIEA--DGDGVTVTTADGT-Y-EAKKLVVSA 200 (376)
T ss_pred CCCEEECCCEEEEEEe--eCCeEEEEeCCCE-E-EeeEEEEec
Confidence 5788999999999987 5668989887774 3 799999993
No 99
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=77.70 E-value=4 Score=38.98 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=41.2
Q ss_pred eEEeCCCchHHHHHHhc---CCCCeeEcceeEeeEEeecCCC-CeEEEccCCCccccccEEEec
Q 020469 71 KYVGVPGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVAS 130 (326)
Q Consensus 71 ~yv~~~Gm~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~-~w~l~~~~g~~~~~~d~VVla 130 (326)
+.+|+..+--+++.|-+ .+|.+|+++++|..|.. .++ .-.+...+|.++ .+|.||+|
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~--~~~~~~~v~~~~g~~i-~~~~vvlA 225 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI--EDNEVLGVKLTKGEEI-EADYVVLA 225 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe--cCCceEEEEccCCcEE-ecCEEEEc
Confidence 44666666666665544 35789999999999987 333 235566778766 79999999
No 100
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=77.48 E-value=4.1 Score=37.97 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=32.8
Q ss_pred hcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 86 a~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
++..+++++.+++|.+|.. ++++|.|.+.+|+ + .+|.||+|.
T Consensus 155 ~~~~g~~~~~~~~V~~i~~--~~~~~~v~~~~~~-i-~a~~vV~aa 196 (380)
T TIGR01377 155 AEAHGATVRDGTKVVEIEP--TELLVTVKTTKGS-Y-QANKLVVTA 196 (380)
T ss_pred HHHcCCEEECCCeEEEEEe--cCCeEEEEeCCCE-E-EeCEEEEec
Confidence 3346788999999999987 6677888876663 3 789999983
No 101
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=76.64 E-value=3.3 Score=38.97 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=29.2
Q ss_pred ccCCCeEEee-----CCCCCC-ChhHHHHHHHHHHHHHHhhh
Q 020469 288 DVKRRLAICG-----DFCVSP-NVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 288 ~~~~~l~~aG-----D~~~g~-~vegA~~SG~~aA~~l~~~l 323 (326)
...++||||| |...|| .+.-||-||..|++.+...|
T Consensus 334 k~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 334 KARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred ccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3478999999 344455 79999999999999988765
No 102
>PRK09897 hypothetical protein; Provisional
Probab=76.63 E-value=4.6 Score=39.95 Aligned_cols=41 Identities=10% Similarity=-0.028 Sum_probs=31.2
Q ss_pred CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCC
Q 020469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKN 133 (326)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~ 133 (326)
+.++.+++|+.|+. .+++|.|.+.++.....+|.||+|+-.
T Consensus 124 V~v~~~~~V~~I~~--~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQI--TNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEE--eCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 56788999999987 667899987554222379999999644
No 103
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=75.78 E-value=2.4 Score=29.19 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=19.1
Q ss_pred eecccCCCceee--CChhHHHHHHHH
Q 020469 14 MLFDHGAPFFTV--TNNDVLALVREW 37 (326)
Q Consensus 14 ~~~DhGAq~ft~--~~~~f~~~~~~~ 37 (326)
..+|+|+.+|.. ..+.+.+++++|
T Consensus 43 ~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 43 YRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred EEEeeccEEEeCCCCchHHHHHHcCC
Confidence 689999999998 457888888764
No 104
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=75.50 E-value=5.6 Score=37.75 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=38.3
Q ss_pred CCCchHHHHHHhcC---CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccC
Q 020469 75 VPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 132 (326)
Q Consensus 75 ~~Gm~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~ 132 (326)
......+.+.|.+. .+++|+++++|.+|.. +++.|.+.++ ++.+ .+|.||+|+-
T Consensus 101 ~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~~v~~~-~~~i-~ad~VIlAtG 157 (400)
T TIGR00275 101 SDSAADVLDALLNELKELGVEILTNSKVKSIKK--DDNGFGVETS-GGEY-EADKVILATG 157 (400)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe--cCCeEEEEEC-CcEE-EcCEEEECCC
Confidence 33445566555543 4688999999999986 5667888764 4444 7999999953
No 105
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=75.34 E-value=5.4 Score=38.36 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccC---CC-ccccccEEEecc
Q 020469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVASD 131 (326)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~---g~-~~~~~d~VVla~ 131 (326)
+|.++|.+.-+.++++++.|+.|++ ..++.|.|...| |+ ....++.|++..
T Consensus 186 ~l~~~l~~~~~~~~~~~~eV~~i~r-~~dg~W~v~~~~~~~~~~~~v~a~FVfvGA 240 (488)
T PF06039_consen 186 QLVEYLQKQKGFELHLNHEVTDIKR-NGDGRWEVKVKDLKTGEKREVRAKFVFVGA 240 (488)
T ss_pred HHHHHHHhCCCcEEEecCEeCeeEE-CCCCCEEEEEEecCCCCeEEEECCEEEECC
Confidence 3445555544688999999999998 334559997532 21 223789999984
No 106
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=74.45 E-value=6 Score=37.42 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCC-----CccccccEEEecc
Q 020469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG-----QSLGQFNGVVASD 131 (326)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g-----~~~~~~d~VVla~ 131 (326)
+|.+.+ +..|++|+.+++|.+|+. ++++|.+.+.++ ..+ .+|.||+|.
T Consensus 202 ~l~~~a-~~~G~~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~~~i-~a~~vV~a~ 254 (410)
T PRK12409 202 GLAAAC-ARLGVQFRYGQEVTSIKT--DGGGVVLTVQPSAEHPSRTL-EFDGVVVCA 254 (410)
T ss_pred HHHHHH-HhCCCEEEcCCEEEEEEE--eCCEEEEEEEcCCCCccceE-ecCEEEECC
Confidence 344433 335788999999999986 566777654332 133 799999993
No 107
>PRK05868 hypothetical protein; Validated
Probab=74.32 E-value=7.6 Score=36.36 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=32.9
Q ss_pred CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+++++++++|++|+. +++++.|++++|+.. .+|.||-|+
T Consensus 118 ~v~i~~~~~v~~i~~--~~~~v~v~~~dg~~~-~adlvIgAD 156 (372)
T PRK05868 118 SVEYLFDDSISTLQD--DGDSVRVTFERAAAR-EFDLVIGAD 156 (372)
T ss_pred CcEEEeCCEEEEEEe--cCCeEEEEECCCCeE-EeCEEEECC
Confidence 578999999999986 667889988888764 799999985
No 108
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=73.89 E-value=6 Score=36.68 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=32.9
Q ss_pred hHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..|.+++.+..+++|+.+++|.+|+. . .|.+.+|+ + .+|.||+|+
T Consensus 149 ~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g~-i-~a~~VV~A~ 193 (365)
T TIGR03364 149 PALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRGD-V-HADQVFVCP 193 (365)
T ss_pred HHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCCc-E-EeCEEEECC
Confidence 45666665444788999999999974 2 56666675 3 699999994
No 109
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=73.85 E-value=6.4 Score=38.54 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=37.4
Q ss_pred hHHHHHHhcCCC-CeeEcceeEeeEEeecCCCCeEEEcc---CCC--ccccccEEEeccCCCCCcchhhhcCC
Q 020469 79 NSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGL---DGQ--SLGQFNGVVASDKNVVSPRFRDVTGR 145 (326)
Q Consensus 79 ~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~---~g~--~~~~~d~VVla~~~~pap~~~~ll~~ 145 (326)
.+|.+.+.+ .+ ++|+++++|.+|+. .+++.|.+... +|+ .+ .+|.||+|.- .=+..+++++++
T Consensus 187 ~aL~~~a~~-~Ggv~i~~~teV~~I~~-~~dg~~~v~~~~~~~G~~~~i-~A~~VVvaAG-g~s~~L~~~~Gi 255 (494)
T PRK05257 187 RQLVGYLQK-QGNFELQLGHEVRDIKR-NDDGSWTVTVKDLKTGEKRTV-RAKFVFIGAG-GGALPLLQKSGI 255 (494)
T ss_pred HHHHHHHHh-CCCeEEEeCCEEEEEEE-CCCCCEEEEEEEcCCCceEEE-EcCEEEECCC-cchHHHHHHcCC
Confidence 334444433 34 68999999999986 23334887643 343 23 7999998832 223334444443
No 110
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=72.70 E-value=7.3 Score=36.83 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCCeeEcceeEeeEEeecCCCCe-EEEccCCCccccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w-~l~~~~g~~~~~~d~VVla~ 131 (326)
.+++|+++++|++|+. ++++| .+.+++++ + .+|.||+|+
T Consensus 214 ~G~~i~~~~~V~~i~~--~~~~~~~v~t~~~~-~-~a~~VV~a~ 253 (416)
T PRK00711 214 LGVKFRFNTPVDGLLV--EGGRITGVQTGGGV-I-TADAYVVAL 253 (416)
T ss_pred CCCEEEcCCEEEEEEe--cCCEEEEEEeCCcE-E-eCCEEEECC
Confidence 5788999999999986 55665 36665553 3 789999993
No 111
>PRK06116 glutathione reductase; Validated
Probab=71.30 E-value=8 Score=37.19 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=31.8
Q ss_pred CCCCeeEcceeEeeEEeecCCCC-eEEEccCCCccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~-w~l~~~~g~~~~~~d~VVla~ 131 (326)
..+++++++++|.+|+. ++++ +.+.+.+|+.+ .+|.||++.
T Consensus 220 ~~GV~i~~~~~V~~i~~--~~~g~~~v~~~~g~~i-~~D~Vv~a~ 261 (450)
T PRK06116 220 KKGIRLHTNAVPKAVEK--NADGSLTLTLEDGETL-TVDCLIWAI 261 (450)
T ss_pred HCCcEEECCCEEEEEEE--cCCceEEEEEcCCcEE-EeCEEEEee
Confidence 35688999999999986 4344 67777777654 799999994
No 112
>PLN02507 glutathione reductase
Probab=71.26 E-value=7.5 Score=38.10 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=33.3
Q ss_pred hcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 86 a~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+..+++++++++|.+|+. ++++..+.+.+|+.+ .+|.||++.
T Consensus 254 l~~~GI~i~~~~~V~~i~~--~~~~~~v~~~~g~~i-~~D~vl~a~ 296 (499)
T PLN02507 254 LEGRGINLHPRTNLTQLTK--TEGGIKVITDHGEEF-VADVVLFAT 296 (499)
T ss_pred HHhCCCEEEeCCEEEEEEE--eCCeEEEEECCCcEE-EcCEEEEee
Confidence 3445789999999999986 455677777677654 799999994
No 113
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=71.22 E-value=8.1 Score=39.26 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=39.8
Q ss_pred hHHHHHHhcCCCC-eeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 79 NSICKALCHQPGV-ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 79 ~~l~~~La~~l~~-~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..|.+.|++.++. .++++++|.+|+. +++++.+.+.+|+.+ .+|.||.|+
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~--~~d~VtV~~~dG~ti-~aDlVVGAD 244 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFED--SGDKVTVVLENGQRY-EGDLLVGAD 244 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEE--eCCEEEEEECCCCEE-EcCEEEECC
Confidence 4577888877764 3688999999987 677889988888654 789999995
No 114
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.92 E-value=8 Score=38.05 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=33.7
Q ss_pred CCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..+++++++++|.+|.+ .++.|.+.+.+|..+ .+|.||+|+
T Consensus 278 ~~gv~i~~~~~V~~I~~--~~~~~~V~~~~g~~i-~a~~vViAt 318 (517)
T PRK15317 278 EYDVDIMNLQRASKLEP--AAGLIEVELANGAVL-KAKTVILAT 318 (517)
T ss_pred HCCCEEEcCCEEEEEEe--cCCeEEEEECCCCEE-EcCEEEECC
Confidence 35688999999999987 557899988777654 799999995
No 115
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=70.55 E-value=6.5 Score=37.97 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCC---CccccccEEEecc
Q 020469 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG---QSLGQFNGVVASD 131 (326)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g---~~~~~~d~VVla~ 131 (326)
+...+..+++++++++|.+|+. +++++.+...+| +.+ .+|.||++.
T Consensus 220 ~~~l~~~gV~i~~~~~V~~i~~--~~~~v~v~~~~gg~~~~i-~~D~vi~a~ 268 (462)
T PRK06416 220 ERALKKRGIKIKTGAKAKKVEQ--TDDGVTVTLEDGGKEETL-EADYVLVAV 268 (462)
T ss_pred HHHHHHcCCEEEeCCEEEEEEE--eCCEEEEEEEeCCeeEEE-EeCEEEEee
Confidence 3333446788999999999986 455677765554 333 799999994
No 116
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=70.10 E-value=8.1 Score=37.43 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=34.0
Q ss_pred HHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+...+..+++++++++|.+|+. +++++.+...+|+.+ .+|.||++.
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~--~~~~~~v~~~~g~~l-~~D~vl~a~ 270 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVER--TGDGVVVTLTDGRTV-EGSHALMAV 270 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEE--eCCEEEEEECCCcEE-EecEEEEee
Confidence 3333445788999999999976 445677776677654 799999984
No 117
>PRK06475 salicylate hydroxylase; Provisional
Probab=69.18 E-value=11 Score=35.45 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=32.7
Q ss_pred HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEcc--CCCccccccEEEecc
Q 020469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (326)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~g~~~~~~d~VVla~ 131 (326)
|.+++.+..+++|+++++|.++.. +++++.++.. +++....+|.||-|+
T Consensus 113 L~~~~~~~~~i~v~~~~~v~~~~~--~~~~v~v~~~~~~~~~~~~adlvIgAD 163 (400)
T PRK06475 113 LLDACRNNPGIEIKLGAEMTSQRQ--TGNSITATIIRTNSVETVSAAYLIACD 163 (400)
T ss_pred HHHHHHhcCCcEEEECCEEEEEec--CCCceEEEEEeCCCCcEEecCEEEECC
Confidence 333443333577999999999986 6677877652 232223789999885
No 118
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=68.62 E-value=11 Score=36.67 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=32.8
Q ss_pred HHHHHHhcC---CCCeeEcceeEeeEEeecCCCCeEEEc---cCCC--ccccccEEEecc
Q 020469 80 SICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQ--SLGQFNGVVASD 131 (326)
Q Consensus 80 ~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w~l~~---~~g~--~~~~~d~VVla~ 131 (326)
.++++|++. .|++|+++++|.+|+. .+++.|.+.+ .+|+ .+ .+|.||+|.
T Consensus 179 ~l~~aL~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~v~~~~~~~g~~~~i-~A~~VV~AA 236 (483)
T TIGR01320 179 ALTKQLLGYLVQNGTTIRFGHEVRNLKR-QSDGSWTVTVKNTRTGGKRTL-NTRFVFVGA 236 (483)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEE-cCCCeEEEEEeeccCCceEEE-ECCEEEECC
Confidence 344444333 3789999999999986 2234688753 2332 23 799999983
No 119
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=67.33 E-value=12 Score=35.67 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=33.2
Q ss_pred hHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeE-EEccCC--CccccccEEEec
Q 020469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLDG--QSLGQFNGVVAS 130 (326)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~-l~~~~g--~~~~~~d~VVla 130 (326)
.+|.+++. ..|+++..+++|.++.. +++++. +.+.++ ..+ .+|+||+|
T Consensus 267 ~aL~~~~~-~~Gg~il~g~~V~~i~~--~~~~v~~V~t~~g~~~~l-~AD~vVLA 317 (419)
T TIGR03378 267 EALKHRFE-QLGGVMLPGDRVLRAEF--EGNRVTRIHTRNHRDIPL-RADHFVLA 317 (419)
T ss_pred HHHHHHHH-HCCCEEEECcEEEEEEe--eCCeEEEEEecCCccceE-ECCEEEEc
Confidence 44455554 35778999999999987 556555 444554 233 79999999
No 120
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.12 E-value=11 Score=37.05 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+++++++++|.+|.. +++.|.+...+|+.+ .+|.||+|+
T Consensus 280 ~gv~i~~~~~V~~I~~--~~~~~~v~~~~g~~i-~~d~lIlAt 319 (515)
T TIGR03140 280 YPIDLMENQRAKKIET--EDGLIVVTLESGEVL-KAKSVIVAT 319 (515)
T ss_pred hCCeEEcCCEEEEEEe--cCCeEEEEECCCCEE-EeCEEEECC
Confidence 4678999999999986 556788887777654 899999995
No 121
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=66.10 E-value=11 Score=36.31 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=31.8
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.++++++++.|.+++. +++++.+...+|+.+ .+|.||+|.
T Consensus 229 ~gI~v~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~vi~a~ 268 (461)
T PRK05249 229 SGVTIRHNEEVEKVEG--GDDGVIVHLKSGKKI-KADCLLYAN 268 (461)
T ss_pred cCCEEEECCEEEEEEE--eCCeEEEEECCCCEE-EeCEEEEee
Confidence 4788999999999986 456677776677654 799999994
No 122
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=65.47 E-value=8.7 Score=37.04 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=33.0
Q ss_pred CeeEcceeEeeEEeecCCCCeEEEccCCCcc-ccccEEEeccC
Q 020469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSL-GQFNGVVASDK 132 (326)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~-~~~d~VVla~~ 132 (326)
..|+++++|+.+.++.+++.|.|++++|... ..+|.||+|+=
T Consensus 99 ~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG 141 (443)
T COG2072 99 FQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATG 141 (443)
T ss_pred eEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeec
Confidence 4688999999998865667899999887642 24999999953
No 123
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=65.43 E-value=12 Score=35.93 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=31.7
Q ss_pred CCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..+++++++++|.+|.. .+++..+...+|+.+ .+|.||+|.
T Consensus 219 ~~gV~i~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~viva~ 259 (446)
T TIGR01424 219 GRGIRIHPQTSLTSITK--TDDGLKVTLSHGEEI-VADVVLFAT 259 (446)
T ss_pred HCCCEEEeCCEEEEEEE--cCCeEEEEEcCCcEe-ecCEEEEee
Confidence 35788999999999986 445566766667654 799999994
No 124
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=65.41 E-value=15 Score=34.69 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=31.5
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..+++++++++|.+|.. ++.+.+.+.+|+.+ .+|.||++.
T Consensus 197 ~~~GV~i~~~~~V~~i~~---~~~~~v~l~~g~~i-~aD~Vv~a~ 237 (396)
T PRK09754 197 QQAGVRILLNNAIEHVVD---GEKVELTLQSGETL-QADVVIYGI 237 (396)
T ss_pred HHCCCEEEeCCeeEEEEc---CCEEEEEECCCCEE-ECCEEEECC
Confidence 345788999999999974 34566777778654 799999983
No 125
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=64.71 E-value=7.8 Score=35.96 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=34.3
Q ss_pred hHHHHHHhcCCCCeeEcceeEeeEEeecCC--CCeEEEcc----CCCccccccEEEecc
Q 020469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDK--NLWSVSGL----DGQSLGQFNGVVASD 131 (326)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~--~~w~l~~~----~g~~~~~~d~VVla~ 131 (326)
+.-++-.++.++..++++++|.+|++..++ ..|.|.+. +++.+ .++.||+++
T Consensus 98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~-~ar~vVla~ 155 (341)
T PF13434_consen 98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETY-RARNVVLAT 155 (341)
T ss_dssp HHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEE-EESEEEE--
T ss_pred HHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEE-EeCeEEECc
Confidence 344555667777569999999999984322 24999873 23333 789999985
No 126
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=64.64 E-value=11 Score=35.82 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=29.6
Q ss_pred CCCeEEeeCC------CCCCChhHHHHHHHHHHHHHHhhh
Q 020469 290 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 290 ~~~l~~aGD~------~~g~~vegA~~SG~~aA~~l~~~l 323 (326)
.+++.++||. +.|++|.-|+.||..||+.+.+.+
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~ 308 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEES 308 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 4689999996 568899999999999999998764
No 127
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=63.99 E-value=12 Score=36.17 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=31.3
Q ss_pred CCCCeeEcceeEeeEEeecCCCCeEEEccCCC--ccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ--SLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~--~~~~~d~VVla~ 131 (326)
..+++++++++|.+|+. +++++.+...+|+ .+ .+|.||+|+
T Consensus 223 ~~gi~i~~~~~v~~i~~--~~~~v~v~~~~g~~~~i-~~D~vi~a~ 265 (461)
T TIGR01350 223 KKGVKILTNTKVTAVEK--NDDQVVYENKGGETETL-TGEKVLVAV 265 (461)
T ss_pred HcCCEEEeCCEEEEEEE--eCCEEEEEEeCCcEEEE-EeCEEEEec
Confidence 34688999999999986 5566777665662 33 799999994
No 128
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=63.96 E-value=16 Score=38.11 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=39.8
Q ss_pred hHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcch
Q 020469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRF 139 (326)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~ 139 (326)
..+.+...+..+++|++++.|.+|.. ++..-.+.+.+|+.+ .+|.||++.-..|...+
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i-~~D~Vi~a~G~~Pn~~l 242 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSL-EADLIVMAAGIRPNDEL 242 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEE-EcCEEEECCCCCcCcHH
Confidence 33444445557889999999999975 433345666788765 89999999655554443
No 129
>PRK13984 putative oxidoreductase; Provisional
Probab=63.00 E-value=9.5 Score=38.32 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=32.8
Q ss_pred ccCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
...++||.+||-..+..+-.|+..|+.+|..|...|.
T Consensus 566 Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 566 TSIPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred cCCCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 4567999999999888888999999999999988775
No 130
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=62.49 E-value=11 Score=38.35 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=32.2
Q ss_pred ccCCCeEEeeCCCCCCC-hhHHHHHHHHHHHHHHhhhcc
Q 020469 288 DVKRRLAICGDFCVSPN-VEGAILSGLDAASKLTEILSC 325 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~~-vegA~~SG~~aA~~l~~~l~~ 325 (326)
...++||.+||-..|.. +-.|+..|+.||..|...|.+
T Consensus 598 Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 598 THLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 44679999999887764 589999999999999988764
No 131
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=61.25 E-value=12 Score=37.94 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=32.3
Q ss_pred ccCCCeEEeeCCCCCCC-hhHHHHHHHHHHHHHHhhhcc
Q 020469 288 DVKRRLAICGDFCVSPN-VEGAILSGLDAASKLTEILSC 325 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~~-vegA~~SG~~aA~~l~~~l~~ 325 (326)
...++||.+||-..|.. +-.|+..|+.||..|...|+.
T Consensus 615 Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 615 TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 34678999999987764 589999999999999988864
No 132
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=60.04 E-value=17 Score=34.86 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=31.2
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..+++++++++|.+|.. +++.+.+.+++|+ + .+|.||++.
T Consensus 210 ~~~gV~v~~~~~v~~i~~--~~~~v~v~~~~g~-i-~~D~vl~a~ 250 (441)
T PRK08010 210 RDQGVDIILNAHVERISH--HENQVQVHSEHAQ-L-AVDALLIAS 250 (441)
T ss_pred HhCCCEEEeCCEEEEEEE--cCCEEEEEEcCCe-E-EeCEEEEee
Confidence 345788999999999986 4556777665554 3 799999994
No 133
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=59.84 E-value=22 Score=37.31 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=39.8
Q ss_pred hHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcch
Q 020469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRF 139 (326)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~ 139 (326)
..+.+...+..+++|++++.|.+|....++..-.+.+.+|+.+ .+|.||++.-..|...+
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i-~~D~Vv~A~G~rPn~~L 249 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSEL-EVDFIVFSTGIRPQDKL 249 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEE-EcCEEEECCCcccCchH
Confidence 3444445556789999999999997511122345666788765 89999999654444443
No 134
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=58.94 E-value=24 Score=33.69 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=36.7
Q ss_pred CCCchHHHHHHh---cCCCCeeEcceeEeeEEeecCC-CCeEE--Ecc-CCCccccccEEEeccCCC
Q 020469 75 VPGMNSICKALC---HQPGVESKFGVGVGRFEWLEDK-NLWSV--SGL-DGQSLGQFNGVVASDKNV 134 (326)
Q Consensus 75 ~~Gm~~l~~~La---~~l~~~i~~~~~V~~i~~~~~~-~~w~l--~~~-~g~~~~~~d~VVla~~~~ 134 (326)
.++...+.+.|. +..+++|+++++|++|.. +. +++.+ ... ++..+ .++.||+|+-+.
T Consensus 119 ~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~--~~~~g~v~gv~~~~~~~~i-~ak~VIlAtGG~ 182 (432)
T TIGR02485 119 RGGGKALTNALYSSAERLGVEIRYGIAVDRIPP--EAFDGAHDGPLTTVGTHRI-TTQALVLAAGGL 182 (432)
T ss_pred cCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEe--cCCCCeEEEEEEcCCcEEE-EcCEEEEcCCCc
Confidence 355666777764 345789999999999986 32 34432 222 22233 689999996543
No 135
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=58.92 E-value=15 Score=35.74 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=31.3
Q ss_pred ccCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l~ 324 (326)
...++||.+||...|. .+-.|+..|+.||..|...|.
T Consensus 428 Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 428 TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 3567999999998765 578899999999999988774
No 136
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=58.60 E-value=14 Score=35.54 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=30.1
Q ss_pred ccCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhh
Q 020469 288 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l 323 (326)
...++||.+||-..|+ .+-.|+..|+.+|..|...|
T Consensus 413 Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 413 TSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred cCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 3467899999998766 57899999999999997754
No 137
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=58.57 E-value=13 Score=34.53 Aligned_cols=39 Identities=13% Similarity=0.012 Sum_probs=27.9
Q ss_pred CCeeEcceeEeeEEeecCC-CCeEEEccC---CC-ccccccEEEec
Q 020469 90 GVESKFGVGVGRFEWLEDK-NLWSVSGLD---GQ-SLGQFNGVVAS 130 (326)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~-~~w~l~~~~---g~-~~~~~d~VVla 130 (326)
..+|+.++.|++++. .+ ++|+|...+ |+ ....+|.||+|
T Consensus 293 ~~~l~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~~~~~~D~VilA 336 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQ--DGDGGVRLTLRHRQTGEEETLEVDAVILA 336 (341)
T ss_dssp -SEEETTEEEEEEEE--ES-SSEEEEEEETTT--EEEEEESEEEE-
T ss_pred CeEEeCCCEEEEEEE--CCCCEEEEEEEECCCCCeEEEecCEEEEc
Confidence 367899999999998 44 589998754 21 22379999999
No 138
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=58.43 E-value=14 Score=35.70 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=29.5
Q ss_pred CCCeEEeeCC------CCCCChhHHHHHHHHHHHHHHhhh
Q 020469 290 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 290 ~~~l~~aGD~------~~g~~vegA~~SG~~aA~~l~~~l 323 (326)
.+++.+.||. +.|.+|.-|+.||..||+.|.+.+
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 4579999996 568899999999999999998765
No 139
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=58.37 E-value=18 Score=34.43 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=31.9
Q ss_pred HHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccC-CCcccc--ccEEEecc
Q 020469 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQSLGQ--FNGVVASD 131 (326)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~-g~~~~~--~d~VVla~ 131 (326)
+.+.+..+++++++++|.+|.. +++.+.+...+ ++.+ . ||+||+|+
T Consensus 51 ~~~~~~~gv~~~~~~~V~~id~--~~~~v~~~~~~~~~~~-~~~yd~lIiAT 99 (427)
T TIGR03385 51 EVFIKKRGIDVKTNHEVIEVND--ERQTVVVRNNKTNETY-EESYDYLILSP 99 (427)
T ss_pred HHHHHhcCCeEEecCEEEEEEC--CCCEEEEEECCCCCEE-ecCCCEEEECC
Confidence 4454556778889999999986 55666665432 3333 4 99999995
No 140
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=58.26 E-value=14 Score=38.36 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=31.0
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..+++++++++|.+|.. . ...|.+.+|+.+ .||.||+|+
T Consensus 65 ~~~gv~~~~g~~V~~Id~--~--~k~V~~~~g~~~-~yD~LVlAT 104 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDT--D--QKQVITDAGRTL-SYDKLILAT 104 (785)
T ss_pred HHCCCEEEcCCeEEEEEC--C--CCEEEECCCcEe-eCCEEEECC
Confidence 345788999999999986 3 346767777654 799999995
No 141
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=57.28 E-value=16 Score=33.81 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=33.6
Q ss_pred chHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 78 m~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+....+...+..+++++++++|.+|.. + .+.+.+|+.+ .+|.||++.
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~~----~--~v~~~~g~~i-~~D~vi~a~ 239 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGPD----G--ALILADGRTL-PADAILWAT 239 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEcC----C--eEEeCCCCEE-ecCEEEEcc
Confidence 344455555567899999999999863 2 3555667654 799999993
No 142
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=56.78 E-value=11 Score=35.51 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=28.1
Q ss_pred cCCCeEEee---CC---CCCCChhHHHHHHHHHHHHHHhhh
Q 020469 289 VKRRLAICG---DF---CVSPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 289 ~~~~l~~aG---D~---~~g~~vegA~~SG~~aA~~l~~~l 323 (326)
.-++||||| || +.|=.+..||-||..|++.+...+
T Consensus 367 ~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 367 KVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred cCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 467999999 44 444479999999999999887654
No 143
>PLN02697 lycopene epsilon cyclase
Probab=56.24 E-value=2.2e+02 Score=28.31 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcceeeeeecCCC-CCCCCCCCCCCeeeccCCCeEEeeCC------CCCCChhHHHHHHH
Q 020469 241 LKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSA-FPAASIAKEERCLWDVKRRLAICGDF------CVSPNVEGAILSGL 313 (326)
Q Consensus 241 ~~~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~A-~p~~~~~~~~~~~~~~~~~l~~aGD~------~~g~~vegA~~SG~ 313 (326)
.+.+.+.|.+.+...+.. ...+.+..+. +|.... .+. ...++...||. ..|.+|-.++.+|.
T Consensus 332 ~~~l~~~L~~~l~~~Gi~-----~~~i~~~E~g~iPm~g~---~~~---~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~ 400 (529)
T PLN02697 332 FDLLKKRLMSRLETMGIR-----ILKTYEEEWSYIPVGGS---LPN---TEQKNLAFGAAASMVHPATGYSVVRSLSEAP 400 (529)
T ss_pred HHHHHHHHHHHHHhCCCC-----cceEEEEEeeeecCCCC---Ccc---cCCCeeEeehhhcCCCCchhhhHHHHHHhHH
Confidence 355666666666654321 1223333333 344211 111 14567788875 34678988889999
Q ss_pred HHHHHHHhhhc
Q 020469 314 DAASKLTEILS 324 (326)
Q Consensus 314 ~aA~~l~~~l~ 324 (326)
.+|+.|.+.+.
T Consensus 401 ~~A~~ia~~l~ 411 (529)
T PLN02697 401 KYASVIARILK 411 (529)
T ss_pred HHHHHHHHHhh
Confidence 99998887764
No 144
>PRK14727 putative mercuric reductase; Provisional
Probab=56.15 E-value=26 Score=34.11 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=31.3
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..+++++++++|.+++. +++++.+.+.+++ + .+|.||++.
T Consensus 239 ~~~GV~i~~~~~V~~i~~--~~~~~~v~~~~g~-i-~aD~VlvA~ 279 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEH--DDNGFVLTTGHGE-L-RAEKLLIST 279 (479)
T ss_pred HhCCCEEEcCcEEEEEEE--eCCEEEEEEcCCe-E-EeCEEEEcc
Confidence 345788999999999986 5566777666664 3 799999994
No 145
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=56.15 E-value=18 Score=33.89 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=29.3
Q ss_pred CCCeEEeeCC------CCCCChhHHHHHHHHHHHHHHhhh
Q 020469 290 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 290 ~~~l~~aGD~------~~g~~vegA~~SG~~aA~~l~~~l 323 (326)
.+++.++||. +.|.+|--|+.||..+|+.|.+.+
T Consensus 263 ~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l 302 (388)
T TIGR02023 263 FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYL 302 (388)
T ss_pred CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 4679999996 457899999999999999998765
No 146
>PRK14694 putative mercuric reductase; Provisional
Probab=55.24 E-value=27 Score=33.78 Aligned_cols=42 Identities=10% Similarity=0.220 Sum_probs=31.0
Q ss_pred hcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 86 a~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+..+++++++++|.+|+. +++.+.+.++++ .+ .+|.||++.
T Consensus 228 l~~~GI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i-~~D~vi~a~ 269 (468)
T PRK14694 228 FRREGIEVLKQTQASEVDY--NGREFILETNAG-TL-RAEQLLVAT 269 (468)
T ss_pred HHhCCCEEEeCCEEEEEEE--cCCEEEEEECCC-EE-EeCEEEEcc
Confidence 3345788999999999986 555566665545 34 799999994
No 147
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=55.23 E-value=18 Score=32.10 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=29.4
Q ss_pred CCCeEEeeCC---C-----CCCChhHHHHHHHHHHHHHHhhhcc
Q 020469 290 KRRLAICGDF---C-----VSPNVEGAILSGLDAASKLTEILSC 325 (326)
Q Consensus 290 ~~~l~~aGD~---~-----~g~~vegA~~SG~~aA~~l~~~l~~ 325 (326)
.++|++||=. . -|+.+-+-++||+++|+.|++.|.+
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 6789999932 2 2567889999999999999999875
No 148
>PRK12831 putative oxidoreductase; Provisional
Probab=54.85 E-value=17 Score=35.28 Aligned_cols=37 Identities=30% Similarity=0.252 Sum_probs=31.4
Q ss_pred ccCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l~ 324 (326)
...++||.+||-..|+ .+-.|+..|+.+|..|...|.
T Consensus 424 Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 4467999999987765 678999999999999988774
No 149
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=54.40 E-value=18 Score=31.96 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=28.3
Q ss_pred CCCeEEeeCC---C-----CCCChhHHHHHHHHHHHHHHhhhc
Q 020469 290 KRRLAICGDF---C-----VSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 290 ~~~l~~aGD~---~-----~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
.++|++||=. . -|+.+-+-++||+++|+.|++.|+
T Consensus 212 ~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 212 VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 6789999932 1 256788999999999999998874
No 150
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=53.72 E-value=25 Score=33.78 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=32.8
Q ss_pred HHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccC-CCcc-ccccEEEecc
Q 020469 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQSL-GQFNGVVASD 131 (326)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~-g~~~-~~~d~VVla~ 131 (326)
+.+.+..+++++++++|.+|.. +++.+.+.+.+ ++.+ ..||++|+|+
T Consensus 65 ~~~~~~~~i~v~~~~~V~~Id~--~~~~v~~~~~~~~~~~~~~yd~lviAt 113 (438)
T PRK13512 65 EKFYDRKQITVKTYHEVIAIND--ERQTVTVLNRKTNEQFEESYDKLILSP 113 (438)
T ss_pred HHHHHhCCCEEEeCCEEEEEEC--CCCEEEEEECCCCcEEeeecCEEEECC
Confidence 4454555778899999999987 66666666533 2221 3799999995
No 151
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=53.66 E-value=22 Score=32.94 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=30.2
Q ss_pred cCCCeEEeeCCCCC-CChhHHHHHHHHHHHHHHhhhc
Q 020469 289 VKRRLAICGDFCVS-PNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 289 ~~~~l~~aGD~~~g-~~vegA~~SG~~aA~~l~~~l~ 324 (326)
..++||.|||-..+ ..+..|+..|..+|..|.+.|.
T Consensus 314 ~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 45799999998764 4688899999999999988774
No 152
>PRK07846 mycothione reductase; Reviewed
Probab=53.36 E-value=32 Score=33.21 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=30.7
Q ss_pred CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+++++++++|.+++. ++++..+.+.+|+.+ .+|.||+++
T Consensus 220 ~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~i-~~D~vl~a~ 258 (451)
T PRK07846 220 RWDVRLGRNVVGVSQ--DGSGVTLRLDDGSTV-EADVLLVAT 258 (451)
T ss_pred CeEEEeCCEEEEEEE--cCCEEEEEECCCcEe-ecCEEEEEE
Confidence 577999999999986 455666766677654 799999995
No 153
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=52.58 E-value=36 Score=32.85 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+++++++++|.+++. +++++.+...+|+.+ .+|.||++.
T Consensus 223 gI~i~~~~~V~~i~~--~~~~v~v~~~~g~~i-~~D~vl~a~ 261 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQ--DGDGVTLTLDDGSTV-TADVLLVAT 261 (452)
T ss_pred CCEEEeCCEEEEEEE--cCCeEEEEEcCCCEE-EcCEEEEee
Confidence 578999999999986 555677776667654 799999994
No 154
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=52.49 E-value=24 Score=34.23 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=30.6
Q ss_pred cCCCeEEeeCCCCCCC-hhHHHHHHHHHHHHHHhhhc
Q 020469 289 VKRRLAICGDFCVSPN-VEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 289 ~~~~l~~aGD~~~g~~-vegA~~SG~~aA~~l~~~l~ 324 (326)
..++||.+||-..+.. +-.|+..|+.+|..|...|+
T Consensus 430 ~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 430 TNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999987764 57899999999999988774
No 155
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=51.73 E-value=34 Score=32.26 Aligned_cols=41 Identities=20% Similarity=0.107 Sum_probs=29.4
Q ss_pred CCCCeeEcceeEeeEEeecCCCCe-EEEccCCCccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w-~l~~~~g~~~~~~d~VVla~ 131 (326)
..|+++..+++|.+|.. .+++.+ .|.+++|. + .++.||++.
T Consensus 195 ~~Gv~~~~~~~V~~i~~-~~~~~~~~v~t~~g~-i-~a~~vVvaa 236 (407)
T TIGR01373 195 RRGVDIIQNCEVTGFIR-RDGGRVIGVETTRGF-I-GAKKVGVAV 236 (407)
T ss_pred HCCCEEEeCCEEEEEEE-cCCCcEEEEEeCCce-E-ECCEEEECC
Confidence 35788999999999975 123444 57777774 3 789888873
No 156
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=51.40 E-value=33 Score=33.23 Aligned_cols=46 Identities=22% Similarity=0.130 Sum_probs=32.9
Q ss_pred HHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCc-cccccEEEecc
Q 020469 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS-LGQFNGVVASD 131 (326)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~-~~~~d~VVla~ 131 (326)
+.|.+ -+++++++++|.+++. .+++..+..++|.. ...+|.|++|+
T Consensus 222 ~~l~~-~gv~i~~~~~v~~~~~--~~~~v~v~~~~g~~~~~~ad~vLvAi 268 (454)
T COG1249 222 KQLEK-GGVKILLNTKVTAVEK--KDDGVLVTLEDGEGGTIEADAVLVAI 268 (454)
T ss_pred HHHHh-CCeEEEccceEEEEEe--cCCeEEEEEecCCCCEEEeeEEEEcc
Confidence 34443 5678999999999986 44557777766652 23699999994
No 157
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=51.32 E-value=30 Score=33.04 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=31.5
Q ss_pred HHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+..++..+++++++++|.+|.. +++.+.+.++++ .+ .+|.||+|.
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i-~~d~vi~a~ 242 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-EY-EADVVIVAT 242 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-EE-EcCEEEECc
Confidence 33334456788999999999974 444445555444 43 799999984
No 158
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=50.97 E-value=29 Score=32.14 Aligned_cols=35 Identities=20% Similarity=0.078 Sum_probs=27.3
Q ss_pred cCCCeEEeeCCCCC------CChhHHHHHHHHHHHHHHhhh
Q 020469 289 VKRRLAICGDFCVS------PNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 289 ~~~~l~~aGD~~~g------~~vegA~~SG~~aA~~l~~~l 323 (326)
..++|+.+||-..- .....|+..|..+|+.|...+
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHh
Confidence 46789999998531 245679999999999998765
No 159
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=50.80 E-value=27 Score=33.78 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=30.1
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEcc--CCC-ccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQ-SLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~g~-~~~~~d~VVla~ 131 (326)
+..+++|+++++|.+|.. +++.+.+... +|+ ....+|.||++.
T Consensus 224 ~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~~~g~~~~i~~D~vi~a~ 269 (466)
T PRK07818 224 KKLGVKILTGTKVESIDD--NGSKVTVTVSKKDGKAQELEADKVLQAI 269 (466)
T ss_pred HHCCCEEEECCEEEEEEE--eCCeEEEEEEecCCCeEEEEeCEEEECc
Confidence 345789999999999986 4555555433 553 123799999994
No 160
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.64 E-value=19 Score=34.74 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=38.7
Q ss_pred EeCCCchHHHHHHhcCCC--CeeEcceeEeeEEeecCC-CCeEEEccCCC---ccccccEEEecc
Q 020469 73 VGVPGMNSICKALCHQPG--VESKFGVGVGRFEWLEDK-NLWSVSGLDGQ---SLGQFNGVVASD 131 (326)
Q Consensus 73 v~~~Gm~~l~~~La~~l~--~~i~~~~~V~~i~~~~~~-~~w~l~~~~g~---~~~~~d~VVla~ 131 (326)
....-|-..-+.-|+..+ ..|++++.|..+.. .. +.|.|.+.++. .-..||+||+|+
T Consensus 87 p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~--~~~gkW~V~~~~~~~~~~~~ifd~VvVct 149 (448)
T KOG1399|consen 87 PSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDS--IDKGKWRVTTKDNGTQIEEEIFDAVVVCT 149 (448)
T ss_pred CCHHHHHHHHHHHHHhcChhhheEecccEEEEee--ccCCceeEEEecCCcceeEEEeeEEEEcc
Confidence 334344445555566555 46999999999987 55 68999875542 123699999984
No 161
>PTZ00367 squalene epoxidase; Provisional
Probab=49.60 E-value=2.8e+02 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=26.5
Q ss_pred CCCeEEeeCCC------CCCChhHHHHHHHHHHHHHHh
Q 020469 290 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTE 321 (326)
Q Consensus 290 ~~~l~~aGD~~------~g~~vegA~~SG~~aA~~l~~ 321 (326)
.+++.+.||.. .|.++.-|++.+..+++.|..
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~ 373 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG 373 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 46899999974 477999999999999988753
No 162
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=49.51 E-value=22 Score=34.36 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=30.5
Q ss_pred cCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 020469 289 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 289 ~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l~ 324 (326)
..++||.+||-..+. .+-.|+..|..+|..|...|.
T Consensus 416 s~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 416 SLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999988663 678899999999999988764
No 163
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=49.44 E-value=26 Score=32.68 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=30.3
Q ss_pred HHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 84 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 84 ~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+++..+++++++++|.+|.. +. ..+.+ +|+.+ .||+||+|+
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~--~~--~~v~~-~~~~~-~yd~LVlAT 107 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDA--EA--QVVKS-QGNQW-QYDKLVLAT 107 (377)
T ss_pred HHHHhCCCEEECCCEEEEEEC--CC--CEEEE-CCeEE-eCCEEEECC
Confidence 455556788999999999986 33 35554 34444 799999995
No 164
>PTZ00052 thioredoxin reductase; Provisional
Probab=49.33 E-value=39 Score=33.12 Aligned_cols=43 Identities=21% Similarity=0.067 Sum_probs=31.8
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccC
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 132 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~ 132 (326)
+..++++++++.|.+|.. .++...+...+|+.+ .+|.||++.-
T Consensus 233 ~~~GV~i~~~~~v~~v~~--~~~~~~v~~~~g~~i-~~D~vl~a~G 275 (499)
T PTZ00052 233 KEQGTLFLEGVVPINIEK--MDDKIKVLFSDGTTE-LFDTVLYATG 275 (499)
T ss_pred HHcCCEEEcCCeEEEEEE--cCCeEEEEECCCCEE-EcCEEEEeeC
Confidence 345788999999999986 344556666667654 7999999953
No 165
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=48.88 E-value=30 Score=33.05 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=30.7
Q ss_pred hcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 86 a~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+..+++++++++|.+|.. +++.+.+.. +|+.+ .+|.||+|+
T Consensus 208 l~~~GI~i~~~~~V~~i~~--~~~~v~v~~-~g~~i-~~D~viva~ 249 (438)
T PRK07251 208 MEEDGITFLLNAHTTEVKN--DGDQVLVVT-EDETY-RFDALLYAT 249 (438)
T ss_pred HHHcCCEEEcCCEEEEEEe--cCCEEEEEE-CCeEE-EcCEEEEee
Confidence 3445788999999999986 455565654 45444 799999984
No 166
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=48.84 E-value=31 Score=33.31 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=29.1
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCC-ccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~-~~~~~d~VVla~ 131 (326)
+..+++|+++++|.+|+. +++.+.+.. +|+ ....+|.||+|+
T Consensus 222 ~~~GI~i~~~~~V~~i~~--~~~~v~~~~-~g~~~~i~~D~vivA~ 264 (458)
T PRK06912 222 ENDGVKIFTGAALKGLNS--YKKQALFEY-EGSIQEVNAEFVLVSV 264 (458)
T ss_pred HHCCCEEEECCEEEEEEE--cCCEEEEEE-CCceEEEEeCEEEEec
Confidence 345788999999999986 444455543 332 123799999995
No 167
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=48.56 E-value=23 Score=37.70 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=31.5
Q ss_pred ccCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l~ 324 (326)
+..++||.+||-..|+ .+--|+..|+.||..|...|.
T Consensus 590 Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 590 TSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred cCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467999999998776 588999999999999987663
No 168
>PRK06175 L-aspartate oxidase; Provisional
Probab=48.42 E-value=33 Score=32.89 Aligned_cols=51 Identities=6% Similarity=-0.139 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCCeeEcceeEeeEEeecCCCC---eEEEccCCCc-cccccEEEeccCC
Q 020469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS-LGQFNGVVASDKN 133 (326)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~---w~l~~~~g~~-~~~~d~VVla~~~ 133 (326)
.|.+.+.+..+++|+++++|..|.. ++++ +.+.. +++. ...++.||+|+-+
T Consensus 133 ~L~~~~~~~~gV~i~~~t~v~~Li~--~~~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 133 ILLKKVKKRKNITIIENCYLVDIIE--NDNTCIGAICLK-DNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHhcCCCEEEECcEeeeeEe--cCCEEEEEEEEE-CCcEEEEEcCeEEEccCc
Confidence 3444444445788999999999875 3342 22222 3432 1368999999654
No 169
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=48.40 E-value=38 Score=32.32 Aligned_cols=42 Identities=21% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEec
Q 020469 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (326)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla 130 (326)
.+...+..+++|+++++|.+|.. +. +.+++|+.+ ++|.||++
T Consensus 234 ~~~~L~~~gV~v~~~~~v~~v~~----~~--v~~~~g~~i-~~d~vi~~ 275 (424)
T PTZ00318 234 GQRRLRRLGVDIRTKTAVKEVLD----KE--VVLKDGEVI-PTGLVVWS 275 (424)
T ss_pred HHHHHHHCCCEEEeCCeEEEEeC----CE--EEECCCCEE-EccEEEEc
Confidence 33334557899999999999964 22 445677654 79999998
No 170
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=47.50 E-value=28 Score=34.20 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=31.2
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccC---CC-ccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~---g~-~~~~~d~VVla~ 131 (326)
...|++++.+++|.+|.. +++.|.+...+ |+ ....++.||.|+
T Consensus 166 ~~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~~g~~~~i~a~~VVnAa 212 (508)
T PRK12266 166 AERGAEILTRTRVVSARR--ENGLWHVTLEDTATGKRYTVRARALVNAA 212 (508)
T ss_pred HHcCCEEEcCcEEEEEEE--eCCEEEEEEEEcCCCCEEEEEcCEEEECC
Confidence 345788999999999987 56678776543 42 113789999993
No 171
>PRK13748 putative mercuric reductase; Provisional
Probab=47.37 E-value=34 Score=33.91 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=30.8
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..+++|+++++|.+|+. +++.+.+.+++++ + .+|.||+|.
T Consensus 321 ~~~gI~i~~~~~v~~i~~--~~~~~~v~~~~~~-i-~~D~vi~a~ 361 (561)
T PRK13748 321 RAEGIEVLEHTQASQVAH--VDGEFVLTTGHGE-L-RADKLLVAT 361 (561)
T ss_pred HHCCCEEEcCCEEEEEEe--cCCEEEEEecCCe-E-EeCEEEEcc
Confidence 335788999999999986 4556667665553 4 799999994
No 172
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=47.26 E-value=41 Score=32.02 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=30.7
Q ss_pred HHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..++..+++++++++|.+|.. ++ .. +...+|+.+ .+|.||++.
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~--~~-~~-v~~~~g~~i-~~D~vi~a~ 229 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEG--EE-RV-KVFTSGGVY-QADMVILAT 229 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEec--CC-CE-EEEcCCCEE-EeCEEEECC
Confidence 3334456788999999999975 33 33 344566654 799999994
No 173
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=46.54 E-value=34 Score=33.39 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=30.8
Q ss_pred ccCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l~ 324 (326)
...++||.|||-..|. .+-.|+..|+.||..|...|.
T Consensus 442 Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 442 TSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred ECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999987664 577899999999999988774
No 174
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=46.54 E-value=23 Score=31.38 Aligned_cols=35 Identities=20% Similarity=0.004 Sum_probs=28.8
Q ss_pred cCCCeEEeeCCCC--CCChhHHHHHHHHHHHHHHhhh
Q 020469 289 VKRRLAICGDFCV--SPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 289 ~~~~l~~aGD~~~--g~~vegA~~SG~~aA~~l~~~l 323 (326)
..++||++||-.. ...+..|+..|..+|..|...|
T Consensus 264 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 264 SVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 4578999999775 3568899999999999987653
No 175
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=46.23 E-value=35 Score=32.93 Aligned_cols=49 Identities=8% Similarity=0.054 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEcc--CC-CccccccEEEecc
Q 020469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DG-QSLGQFNGVVASD 131 (326)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~g-~~~~~~d~VVla~ 131 (326)
...+...+..+++++++++|.+|.. +++...+... ++ +.+ .+|.||+|.
T Consensus 211 ~~l~~~l~~~gV~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~i-~~D~ViiA~ 262 (463)
T TIGR02053 211 AAVEEALAEEGIEVVTSAQVKAVSV--RGGGKIITVEKPGGQGEV-EADELLVAT 262 (463)
T ss_pred HHHHHHHHHcCCEEEcCcEEEEEEE--cCCEEEEEEEeCCCceEE-EeCEEEEeE
Confidence 3333444446788999999999986 4445555432 22 333 799999994
No 176
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=45.61 E-value=31 Score=37.06 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=31.5
Q ss_pred ccCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l~ 324 (326)
...++||.+||...|+ .+-.|+..|+.||..|...|.
T Consensus 718 Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 718 TNLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 4567999999998775 578999999999999988764
No 177
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=45.41 E-value=51 Score=32.24 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=31.4
Q ss_pred CCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCC
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVV 135 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~p 135 (326)
..++++++++.|.+|.. .+++...+...+|+.+ .+|.||++.--.|
T Consensus 243 ~~GI~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i-~~D~vl~a~G~~P 288 (486)
T TIGR01423 243 ANGINIMTNENPAKVTL-NADGSKHVTFESGKTL-DVDVVMMAIGRVP 288 (486)
T ss_pred HcCCEEEcCCEEEEEEE-cCCceEEEEEcCCCEE-EcCEEEEeeCCCc
Confidence 45788999999999986 1222245555566554 7999999853333
No 178
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=45.41 E-value=49 Score=31.86 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=30.4
Q ss_pred cCCCCeeEcceeEeeEEeecCCC-CeEEEccCCCccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~-~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..+++++++++|.+|.. +++ ...+...+|+....+|.||++.
T Consensus 218 ~~~gI~i~~~~~v~~i~~--~~~~~~~v~~~~g~~~i~~D~vi~a~ 261 (450)
T TIGR01421 218 EKEGINVHKLSKPVKVEK--TVEGKLVIHFEDGKSIDDVDELIWAI 261 (450)
T ss_pred HHcCCEEEcCCEEEEEEE--eCCceEEEEECCCcEEEEcCEEEEee
Confidence 345788999999999986 333 3556666663223799999994
No 179
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=45.13 E-value=31 Score=32.53 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=29.1
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccC
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 132 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~ 132 (326)
.++++++++.|.+|.. +.. .+..++|+.+ .||+||+|+-
T Consensus 71 ~~i~~~~g~~V~~id~--~~~--~v~~~~g~~~-~yd~LViATG 109 (396)
T PRK09754 71 NNVHLHSGVTIKTLGR--DTR--ELVLTNGESW-HWDQLFIATG 109 (396)
T ss_pred CCCEEEcCCEEEEEEC--CCC--EEEECCCCEE-EcCEEEEccC
Confidence 4678999999999986 333 4555667654 7999999953
No 180
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=43.95 E-value=39 Score=32.82 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEccC--CC-ccccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLD--GQ-SLGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~--g~-~~~~~d~VVla~ 131 (326)
.+++|+++++|.+|+. ++++..+...+ |+ ....+|.||++.
T Consensus 237 ~gi~i~~~~~v~~i~~--~~~~v~v~~~~~~g~~~~i~~D~vl~a~ 280 (475)
T PRK06327 237 QGLDIHLGVKIGEIKT--GGKGVSVAYTDADGEAQTLEVDKLIVSI 280 (475)
T ss_pred cCcEEEeCcEEEEEEE--cCCEEEEEEEeCCCceeEEEcCEEEEcc
Confidence 5788999999999986 44555554333 32 123799999994
No 181
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=43.55 E-value=38 Score=32.23 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=35.9
Q ss_pred CCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 76 PGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 76 ~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..+..++...+.+|++|++++.|++|+. ++..+ .+|+...+++.||-|.
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~----~~v~~--~~g~~~I~~~tvvWaa 258 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP----DGVTL--KDGEEEIPADTVVWAA 258 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC----CcEEE--ccCCeeEecCEEEEcC
Confidence 34455677777888999999999999975 44444 4454213799999984
No 182
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=43.45 E-value=30 Score=35.85 Aligned_cols=37 Identities=27% Similarity=0.198 Sum_probs=31.6
Q ss_pred ccCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l~ 324 (326)
...++||.+||-..|+ .+-.|+..|+.+|..|...|.
T Consensus 713 Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 713 SSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999988765 588999999999999998875
No 183
>PLN02661 Putative thiazole synthesis
Probab=43.20 E-value=32 Score=32.14 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCCeEEeeCC---C-----CCCChhHHHHHHHHHHHHHHhhhc
Q 020469 290 KRRLAICGDF---C-----VSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 290 ~~~l~~aGD~---~-----~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
.++|++||=. . -|+.+-+-++||+++|+.|++.|.
T Consensus 286 ~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 286 VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 6799999932 2 256789999999999999999885
No 184
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=43.04 E-value=51 Score=30.82 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=31.0
Q ss_pred CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEec
Q 020469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (326)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla 130 (326)
..+++++.|.+|+. .++.+.+.+.+|+.+ .++.||-|
T Consensus 101 ~~~~~~~~V~~i~~--~~~~~~v~~~~g~~i-~a~~VvDa 137 (374)
T PF05834_consen 101 GVIRLNARVTSIEE--TGDGVLVVLADGRTI-RARVVVDA 137 (374)
T ss_pred CeEEEccEEEEEEe--cCceEEEEECCCCEE-EeeEEEEC
Confidence 45789999999997 666788888888765 79999998
No 185
>PRK06370 mercuric reductase; Validated
Probab=42.96 E-value=45 Score=32.18 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=30.1
Q ss_pred HHhcCCCCeeEcceeEeeEEeecCCCCeEEEc--cCCCccccccEEEecc
Q 020469 84 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG--LDGQSLGQFNGVVASD 131 (326)
Q Consensus 84 ~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~--~~g~~~~~~d~VVla~ 131 (326)
..++..+++++++++|.+|+. ++++..+.. .++.....+|.||+|+
T Consensus 220 ~~l~~~GV~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~i~~D~Vi~A~ 267 (463)
T PRK06370 220 EILEREGIDVRLNAECIRVER--DGDGIAVGLDCNGGAPEITGSHILVAV 267 (463)
T ss_pred HHHHhCCCEEEeCCEEEEEEE--cCCEEEEEEEeCCCceEEEeCEEEECc
Confidence 333446788999999999986 444444432 2232223799999994
No 186
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=42.37 E-value=32 Score=29.92 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=29.3
Q ss_pred cCCCeEEeeCC---C-----CCCChhHHHHHHHHHHHHHHhhhc
Q 020469 289 VKRRLAICGDF---C-----VSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 289 ~~~~l~~aGD~---~-----~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
-.++|++||=. + -|+.+-|-++||+.+|+.|++.|.
T Consensus 217 V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 217 VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 36789999943 2 257889999999999999998875
No 187
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=42.00 E-value=44 Score=31.94 Aligned_cols=41 Identities=15% Similarity=0.299 Sum_probs=29.3
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEcc-CCCcc-ccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGL-DGQSL-GQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~-~g~~~-~~~d~VVla~ 131 (326)
.++++++++.|.+|.. +++.+.+... +|+.+ ..||++|+|+
T Consensus 69 ~gv~~~~~~~V~~id~--~~~~v~~~~~~~~~~~~~~yd~lviAt 111 (444)
T PRK09564 69 SGIDVKTEHEVVKVDA--KNKTITVKNLKTGSIFNDTYDKLMIAT 111 (444)
T ss_pred CCCeEEecCEEEEEEC--CCCEEEEEECCCCCEEEecCCEEEECC
Confidence 4677889999999987 6666766542 24333 1399999995
No 188
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=42.00 E-value=19 Score=34.41 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=22.3
Q ss_pred ccCCCeEEeeC-----CCCCC-ChhHHHHHHHHHHH
Q 020469 288 DVKRRLAICGD-----FCVSP-NVEGAILSGLDAAS 317 (326)
Q Consensus 288 ~~~~~l~~aGD-----~~~g~-~vegA~~SG~~aA~ 317 (326)
...++|||||. ...|| .+.-||-||..|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 34679999993 23455 69999999999986
No 189
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.55 E-value=30 Score=33.86 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=31.6
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCC---ccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ---SLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~---~~~~~d~VVla~ 131 (326)
...|++++.+++|.+|.. +++.|.|...++. ....++.||.|+
T Consensus 166 ~~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~g~~~~i~a~~VVnAa 211 (502)
T PRK13369 166 AERGATILTRTRCVSARR--EGGLWRVETRDADGETRTVRARALVNAA 211 (502)
T ss_pred HHCCCEEecCcEEEEEEE--cCCEEEEEEEeCCCCEEEEEecEEEECC
Confidence 345788999999999987 6667888765541 112789999993
No 190
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=40.74 E-value=57 Score=31.81 Aligned_cols=44 Identities=16% Similarity=0.012 Sum_probs=30.0
Q ss_pred hcCCCCeeEcceeEeeEEeecCCCCeEEEccCC---CccccccEEEeccC
Q 020469 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG---QSLGQFNGVVASDK 132 (326)
Q Consensus 86 a~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g---~~~~~~d~VVla~~ 132 (326)
.+..+++|++++.|.+|.. .++...+...+| +.+ .+|.||++.-
T Consensus 230 L~~~gV~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~i-~~D~vl~a~G 276 (484)
T TIGR01438 230 MEEHGVKFKRQFVPIKVEQ--IEAKVKVTFTDSTNGIEE-EYDTVLLAIG 276 (484)
T ss_pred HHHcCCEEEeCceEEEEEE--cCCeEEEEEecCCcceEE-EeCEEEEEec
Confidence 3445788999999999986 444444544444 233 7999999953
No 191
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=40.50 E-value=33 Score=34.19 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=31.2
Q ss_pred ccCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l~ 324 (326)
...++||.+||-..|+ .+-.|+..|+.+|..|...|.
T Consensus 407 ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 407 TGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred CCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence 3467999999987754 688999999999999988764
No 192
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=39.94 E-value=40 Score=36.17 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=30.9
Q ss_pred CCCeEEeeCCCCCCChhHHHHHHHHHHHHHHhhhc
Q 020469 290 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 290 ~~~l~~aGD~~~g~~vegA~~SG~~aA~~l~~~l~ 324 (326)
.++|++|||-.....+..|+.+|..||..++..++
T Consensus 438 v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 438 VQGCILAGAANGLFGLAAALADGAAAGAAAARAAG 472 (985)
T ss_pred CCCeEEeeccCCccCHHHHHHHHHHHHHHHHHHcC
Confidence 47899999988778999999999999999887664
No 193
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=39.14 E-value=54 Score=30.70 Aligned_cols=85 Identities=9% Similarity=0.122 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCccccccCceeeeeccCcceeecccCCCCceEEeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCC
Q 020469 31 LALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL 110 (326)
Q Consensus 31 ~~~~~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~ 110 (326)
.+.+..+.+.-+-..|+.....+. +... .-...|..... ..+-++|.+.++..|+++++|.++.. ++
T Consensus 50 ~~~~~~~~~~~v~~~W~~~~v~~~--~~~~------~l~~~Y~~I~r-~~f~~~l~~~l~~~i~~~~~V~~v~~----~~ 116 (370)
T TIGR01789 50 SDAQHAWLADLVQTDWPGYEVRFP--KYRR------KLKTAYRSMTS-TRFHEGLLQAFPEGVILGRKAVGLDA----DG 116 (370)
T ss_pred chhhhhhhhhhheEeCCCCEEECc--chhh------hcCCCceEEEH-HHHHHHHHHhhcccEEecCEEEEEeC----CE
Confidence 344444444545667876433321 1110 01123443333 56777777766655888999999853 34
Q ss_pred eEEEccCCCccccccEEEecc
Q 020469 111 WSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 111 w~l~~~~g~~~~~~d~VVla~ 131 (326)
+.+ .+|+.+ .+|.||-|.
T Consensus 117 v~l--~dg~~~-~A~~VI~A~ 134 (370)
T TIGR01789 117 VDL--APGTRI-NARSVIDCR 134 (370)
T ss_pred EEE--CCCCEE-EeeEEEECC
Confidence 666 567654 799999993
No 194
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=38.96 E-value=44 Score=34.03 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=30.8
Q ss_pred ccCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l~ 324 (326)
...++||.+||-..++ .+-.|+..|+.||..|...|.
T Consensus 464 Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 464 TSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence 4467999999988665 468899999999999988764
No 195
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=38.13 E-value=26 Score=20.12 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.4
Q ss_pred CCceeeCChhHHHHHHHHHh
Q 020469 20 APFFTVTNNDVLALVREWES 39 (326)
Q Consensus 20 Aq~ft~~~~~f~~~~~~~~~ 39 (326)
.+++.+....|+++|++|--
T Consensus 5 p~vi~~d~~~Fr~lVQ~LTG 24 (31)
T PF05678_consen 5 PTVIHTDPSNFRALVQRLTG 24 (31)
T ss_pred CEEEEeCHHHHHHHHHHhHC
Confidence 46788888899999999853
No 196
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=38.12 E-value=48 Score=34.93 Aligned_cols=39 Identities=8% Similarity=0.228 Sum_probs=29.6
Q ss_pred CCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..+++++++++|.+|.. .. ..|.+.+|+.+ .||.+|+|+
T Consensus 71 ~~gI~~~~g~~V~~Id~--~~--~~V~~~~G~~i-~yD~LVIAT 109 (847)
T PRK14989 71 KHGIKVLVGERAITINR--QE--KVIHSSAGRTV-FYDKLIMAT 109 (847)
T ss_pred hCCCEEEcCCEEEEEeC--CC--cEEEECCCcEE-ECCEEEECC
Confidence 35688999999999976 32 35666677654 799999995
No 197
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=37.80 E-value=57 Score=31.15 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=32.7
Q ss_pred HHHHHHhc---CCCCeeEcceeEeeEEeecCCC---CeEEEccCCCc-cccccEEEeccCC
Q 020469 80 SICKALCH---QPGVESKFGVGVGRFEWLEDKN---LWSVSGLDGQS-LGQFNGVVASDKN 133 (326)
Q Consensus 80 ~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~---~w~l~~~~g~~-~~~~d~VVla~~~ 133 (326)
.+.+.|.+ ..+++|+++++|.+|..+ +++ ++.+...+++. ...++.||+|+-+
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQD-DQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEEC-CCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 34444433 357889999999999872 223 23444444431 2368999999644
No 198
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=37.77 E-value=59 Score=31.45 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=28.7
Q ss_pred CCCCeeEcceeEeeEEeecCCCCeEEEcc---CC--CccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGL---DG--QSLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~---~g--~~~~~~d~VVla~ 131 (326)
..+++++++++|.+|+. +++++.+... +| +. ..+|.||++.
T Consensus 227 ~~gV~i~~~~~V~~i~~--~~~~v~v~~~~~~~g~~~~-i~~D~vi~a~ 272 (466)
T PRK06115 227 KQGMKFKLGSKVTGATA--GADGVSLTLEPAAGGAAET-LQADYVLVAI 272 (466)
T ss_pred hcCCEEEECcEEEEEEE--cCCeEEEEEEEcCCCceeE-EEeCEEEEcc
Confidence 35788999999999986 4455655432 22 23 3799999994
No 199
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=36.90 E-value=26 Score=33.22 Aligned_cols=28 Identities=25% Similarity=0.129 Sum_probs=22.2
Q ss_pred cCCCeEEeeC-----CCCCC-ChhHHHHHHHHHH
Q 020469 289 VKRRLAICGD-----FCVSP-NVEGAILSGLDAA 316 (326)
Q Consensus 289 ~~~~l~~aGD-----~~~g~-~vegA~~SG~~aA 316 (326)
..++|||||. ...|| .+.-||-||..|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 3589999993 33444 7999999999886
No 200
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=34.77 E-value=69 Score=32.09 Aligned_cols=46 Identities=15% Similarity=0.020 Sum_probs=29.7
Q ss_pred CCCCeeEcceeEeeEEeecCCCCe---EEEccCCCccccc-cEEEeccCCCC
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQF-NGVVASDKNVV 135 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w---~l~~~~g~~~~~~-d~VVla~~~~p 135 (326)
..+++|+++++|.+|.. +++++ .+...++.....+ +.||+|+-+..
T Consensus 229 ~~Gv~i~~~t~v~~l~~--~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 229 DLGVRIWESAPARELLR--EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred hCCCEEEcCCEEEEEEE--eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 35789999999999986 34432 3333334322357 89999965543
No 201
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=34.16 E-value=51 Score=29.35 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=32.5
Q ss_pred CCCeeEcceeEeeEEeecCCCC---eEEEccCCC---ccccccEEEeccCCCCCcchhhhcC
Q 020469 89 PGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ---SLGQFNGVVASDKNVVSPRFRDVTG 144 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~---w~l~~~~g~---~~~~~d~VVla~~~~pap~~~~ll~ 144 (326)
-+.+|+++++|.+|....++++ +.+...++. ....++.||||.-.+-.|+++..-+
T Consensus 206 ~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SG 267 (296)
T PF00732_consen 206 PNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSG 267 (296)
T ss_dssp TTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTT
T ss_pred CCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccc
Confidence 3578999999999965212322 334444443 2235788999954444555554433
No 202
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=34.15 E-value=23 Score=25.39 Aligned_cols=28 Identities=14% Similarity=0.411 Sum_probs=23.1
Q ss_pred ceeeCChhHHHHHH-HHHhCCccccccCc
Q 020469 22 FFTVTNNDVLALVR-EWESGGLVAEWKVN 49 (326)
Q Consensus 22 ~ft~~~~~f~~~~~-~~~~~g~~~~w~~~ 49 (326)
=||..+++|++.++ .....=+|.+|..+
T Consensus 10 RfTe~D~ey~~~~~~~~~~PPIV~~W~~r 38 (81)
T PF15320_consen 10 RFTEDDEEYMEYCKRPFPPPPIVEPWNSR 38 (81)
T ss_pred hccccCHHHHHHHhCCCCCCCEecCcccC
Confidence 38999999999997 56677789999763
No 203
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=33.30 E-value=77 Score=29.34 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=29.0
Q ss_pred CeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
..+..++.|..+.. +...|.+.+.+|+ + .+|+||+|+
T Consensus 172 ~~~~~~~~~~~~~~--~~~~~~v~t~~g~-i-~a~~vv~a~ 208 (387)
T COG0665 172 VIIEGGTPVTSLER--DGRVVGVETDGGT-I-EADKVVLAA 208 (387)
T ss_pred eEEEccceEEEEEe--cCcEEEEEeCCcc-E-EeCEEEEcC
Confidence 45777999999985 2256889888886 3 799999993
No 204
>PRK10262 thioredoxin reductase; Provisional
Probab=32.25 E-value=30 Score=31.43 Aligned_cols=39 Identities=15% Similarity=-0.024 Sum_probs=30.2
Q ss_pred eccCCCeEEeeCCCCCC--ChhHHHHHHHHHHHHHHhhhcc
Q 020469 287 WDVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILSC 325 (326)
Q Consensus 287 ~~~~~~l~~aGD~~~g~--~vegA~~SG~~aA~~l~~~l~~ 325 (326)
....++||.|||-...+ .+--|+-.|..||..|...|..
T Consensus 276 ~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 276 QTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred ccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHh
Confidence 34578999999987543 3555999999999999887754
No 205
>PTZ00058 glutathione reductase; Provisional
Probab=31.86 E-value=1.2e+02 Score=30.34 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=29.0
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..++++++++.|.+|+. .++++..+...++.....+|.||++.
T Consensus 289 ~~~GV~i~~~~~V~~I~~-~~~~~v~v~~~~~~~~i~aD~VlvA~ 332 (561)
T PTZ00058 289 KKNNINIITHANVEEIEK-VKEKNLTIYLSDGRKYEHFDYVIYCV 332 (561)
T ss_pred HHCCCEEEeCCEEEEEEe-cCCCcEEEEECCCCEEEECCEEEECc
Confidence 345788999999999986 12234555433333223799999994
No 206
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=31.31 E-value=88 Score=30.68 Aligned_cols=44 Identities=9% Similarity=-0.059 Sum_probs=29.9
Q ss_pred CCCeeEcceeEeeEEeecCCCC---eEEEccCCC-ccccccEEEeccCCC
Q 020469 89 PGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ-SLGQFNGVVASDKNV 134 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~---w~l~~~~g~-~~~~~d~VVla~~~~ 134 (326)
.+++|+++++|.+|.. ++++ +.+...+|+ ....+|.||+|+-+.
T Consensus 203 ~gv~i~~~t~v~~l~~--~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 203 RKIPLFVNADVTKITE--KDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred cCCeEEeCCeeEEEEe--cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 5688999999999985 4443 445444433 123689999997543
No 207
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=31.29 E-value=1.2e+02 Score=30.46 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=26.7
Q ss_pred CCCeEEeeCCCCCC-----ChhHHHHHHHHHHHHHHh
Q 020469 290 KRRLAICGDFCVSP-----NVEGAILSGLDAASKLTE 321 (326)
Q Consensus 290 ~~~l~~aGD~~~g~-----~vegA~~SG~~aA~~l~~ 321 (326)
..+|.+.|-.+.-+ ++|-.+++|+.|.-.|++
T Consensus 486 ~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~ 522 (576)
T PRK13977 486 STNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLG 522 (576)
T ss_pred cceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhC
Confidence 56899999877654 699999999999988875
No 208
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=31.12 E-value=94 Score=30.05 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=28.4
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEE-EccCCC-ccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQ-SLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l-~~~~g~-~~~~~d~VVla~ 131 (326)
+..+++++++++|.+|... .+++..+ ...+|+ ....+|.||++.
T Consensus 232 ~~~gI~i~~~~~v~~i~~~-~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLK-KDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred HhcCCEEEeCcEEEEEEEe-cCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 4457889999999999741 1233333 334553 123799999994
No 209
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.98 E-value=88 Score=31.24 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=35.6
Q ss_pred CCCchHHHHHHhc---CCCCeeEcceeEeeEEeecCCCCe-EEEc-cCCCc-cccc-cEEEeccCCCCCc
Q 020469 75 VPGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLW-SVSG-LDGQS-LGQF-NGVVASDKNVVSP 137 (326)
Q Consensus 75 ~~Gm~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w-~l~~-~~g~~-~~~~-d~VVla~~~~pap 137 (326)
..| .+|.+.|.+ ..+++|+++++|++|.. +++.+ -|.. .+|+. ...+ +.||||+-+.-..
T Consensus 214 ~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~--~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 214 AGG-QALAAGLFAGVLRAGIPIWTETSLVRLTD--DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred CCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEe--cCCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence 345 667666644 35789999999999975 33322 1211 23432 1234 5899997665443
No 210
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=30.50 E-value=90 Score=31.17 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=26.9
Q ss_pred cCCCeEEeeCCC---------C-CCChhHHHHHHHHHHHHHHhhh
Q 020469 289 VKRRLAICGDFC---------V-SPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 289 ~~~~l~~aGD~~---------~-g~~vegA~~SG~~aA~~l~~~l 323 (326)
+-++||.||.-. . |.++-.|+.+|+.|++.+....
T Consensus 523 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 523 PIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred CcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 467899999532 2 4468999999999999987654
No 211
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=30.45 E-value=1.1e+02 Score=29.38 Aligned_cols=38 Identities=8% Similarity=0.168 Sum_probs=27.9
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..+++++++++|.+|+. . .+..++|+.+ .+|.||++.
T Consensus 200 ~~~gI~i~~~~~v~~i~~----~--~v~~~~g~~~-~~D~vl~a~ 237 (438)
T PRK13512 200 DKREIPYRLNEEIDAING----N--EVTFKSGKVE-HYDMIIEGV 237 (438)
T ss_pred HhcCCEEEECCeEEEEeC----C--EEEECCCCEE-EeCEEEECc
Confidence 345788999999999963 2 3555566554 799999994
No 212
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=30.15 E-value=73 Score=34.23 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=30.6
Q ss_pred ccCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~-~vegA~~SG~~aA~~l~~~l~ 324 (326)
...++||.+||-..|+ .+-.|+..|+.||+.|+..+.
T Consensus 805 Ts~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 805 TSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred cCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 3467999999987654 789999999999999987553
No 213
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=30.03 E-value=1.1e+02 Score=29.39 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=34.9
Q ss_pred CCchHHHHHHhc---CCCCeeEcceeEeeEEeecCCCCeE-EEc--cCCC-ccccccEEEeccCCC
Q 020469 76 PGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWS-VSG--LDGQ-SLGQFNGVVASDKNV 134 (326)
Q Consensus 76 ~Gm~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w~-l~~--~~g~-~~~~~d~VVla~~~~ 134 (326)
+|...+.+.|.+ ..+++|+++++|.+|.. +++++. +.. .+|+ ....++.||+|+-+.
T Consensus 128 g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~--~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 128 GGGKALVNALYRSAERLGVEIRYDAPVTALEL--DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 344455555543 35788999999999986 444432 332 2332 122689999996543
No 214
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=29.39 E-value=34 Score=32.65 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=39.1
Q ss_pred CchH-HHHHHhcC-------CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 77 GMNS-ICKALCHQ-------PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 77 Gm~~-l~~~La~~-------l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
-|.- |+++|++- -|+.|+-+..|.++.. +.+...|...||..+ ..|.||+|+
T Consensus 386 nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~--~~~nl~lkL~dG~~l-~tD~vVvav 445 (659)
T KOG1346|consen 386 NMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRK--CCKNLVLKLSDGSEL-RTDLVVVAV 445 (659)
T ss_pred ChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhh--hccceEEEecCCCee-eeeeEEEEe
Confidence 3443 46666543 2578999999999987 556678888899776 789999995
No 215
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=29.22 E-value=70 Score=34.38 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=28.7
Q ss_pred cCCCeEEeeCCCCC-CChhHHHHHHHHHHHHHHhh
Q 020469 289 VKRRLAICGDFCVS-PNVEGAILSGLDAASKLTEI 322 (326)
Q Consensus 289 ~~~~l~~aGD~~~g-~~vegA~~SG~~aA~~l~~~ 322 (326)
..++||++||-..| ..+..|+..|+.||..|+..
T Consensus 804 s~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 804 NITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 45789999998755 46899999999999999753
No 216
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=29.16 E-value=1.1e+02 Score=28.57 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=34.5
Q ss_pred HhcCCCCeeEcceeEeeEEeec-CCCCeEEEccCCCccccccEEEec
Q 020469 85 LCHQPGVESKFGVGVGRFEWLE-DKNLWSVSGLDGQSLGQFNGVVAS 130 (326)
Q Consensus 85 La~~l~~~i~~~~~V~~i~~~~-~~~~w~l~~~~g~~~~~~d~VVla 130 (326)
.+..+|+.++.+..|..+.... ++....|.+.+|..+ .++.+|+|
T Consensus 162 ~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y-~akkiI~t 207 (399)
T KOG2820|consen 162 KARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIY-HAKKIIFT 207 (399)
T ss_pred HHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCee-ecceEEEE
Confidence 3445788899999999998522 334577888888766 78999999
No 217
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=29.05 E-value=99 Score=30.14 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=26.6
Q ss_pred ccCCCeEEeeCCCC----------CCChhHHHHHHHHHHHHHHhh
Q 020469 288 DVKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEI 322 (326)
Q Consensus 288 ~~~~~l~~aGD~~~----------g~~vegA~~SG~~aA~~l~~~ 322 (326)
.+-++||.||+... |.++-.|+.+|+.+++.+...
T Consensus 344 t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 344 TTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred ccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 45679999998632 346788999999999988643
No 218
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=28.82 E-value=85 Score=30.39 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=44.9
Q ss_pred EeCCCchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCC
Q 020469 73 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKN 133 (326)
Q Consensus 73 v~~~Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~ 133 (326)
...+..++..+.+.+.-++++++++.|.+++-+.++..-.|...+|..+ .+|.||+-+..
T Consensus 252 lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l-~adlvv~GiG~ 311 (478)
T KOG1336|consen 252 LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTL-EADLVVVGIGI 311 (478)
T ss_pred hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEe-ccCeEEEeecc
Confidence 3456677777777777789999999999998733334456677888764 89999998543
No 219
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=28.62 E-value=87 Score=30.14 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=27.9
Q ss_pred ccCCCeEEeeCCCCC-CChhHHHHHHHHHHHHHHh
Q 020469 288 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 321 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g-~~vegA~~SG~~aA~~l~~ 321 (326)
...++||.|||...+ ....-|...|+.+|+.|..
T Consensus 293 T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 293 TNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 346789999998764 3578899999999999873
No 220
>PRK10262 thioredoxin reductase; Provisional
Probab=27.88 E-value=1e+02 Score=27.96 Aligned_cols=38 Identities=11% Similarity=0.287 Sum_probs=26.4
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
.+.+++.+ .|.+|+. .++.|.+..+++ .+ .||+||+|+
T Consensus 76 ~~~~~~~~-~v~~v~~--~~~~~~v~~~~~-~~-~~d~vilAt 113 (321)
T PRK10262 76 FETEIIFD-HINKVDL--QNRPFRLTGDSG-EY-TCDALIIAT 113 (321)
T ss_pred CCCEEEee-EEEEEEe--cCCeEEEEecCC-EE-EECEEEECC
Confidence 44455554 5777876 567788876544 33 799999995
No 221
>PRK07512 L-aspartate oxidase; Provisional
Probab=27.78 E-value=70 Score=31.48 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCeeEcceeEeeEEeecCCCCe---EEEccCCCccccccEEEeccCCC
Q 020469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQFNGVVASDKNV 134 (326)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w---~l~~~~g~~~~~~d~VVla~~~~ 134 (326)
.|.+.+.+..+++|+.++.|..|.. +++.+ .+...++.....++.||+|+-+.
T Consensus 141 ~L~~~~~~~~gV~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 141 ALIAAVRATPSITVLEGAEARRLLV--DDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHhCCCCEEEECcChhheee--cCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 3444443333678999999999875 34433 23322221123689999996553
No 222
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=27.61 E-value=1.1e+02 Score=29.44 Aligned_cols=52 Identities=17% Similarity=0.067 Sum_probs=32.7
Q ss_pred CCchHHHHHHhcC---CCCeeEcceeEeeEEeecCCCCeEE-EccCCCc-cccccEEEec
Q 020469 76 PGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQS-LGQFNGVVAS 130 (326)
Q Consensus 76 ~Gm~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w~l-~~~~g~~-~~~~d~VVla 130 (326)
+|| .+.+.|.+. .+++|+++++|.+++. .+++... ...+|+. ...+|.||+|
T Consensus 257 pG~-rL~~aL~~~l~~~Gv~I~~g~~V~~v~~--~~~~V~~v~~~~g~~~~i~AD~VVLA 313 (422)
T PRK05329 257 PGL-RLQNALRRAFERLGGRIMPGDEVLGAEF--EGGRVTAVWTRNHGDIPLRARHFVLA 313 (422)
T ss_pred chH-HHHHHHHHHHHhCCCEEEeCCEEEEEEE--eCCEEEEEEeeCCceEEEECCEEEEe
Confidence 454 354444433 4688999999999986 4444433 3334432 2378999999
No 223
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=27.46 E-value=93 Score=29.14 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=27.1
Q ss_pred CCCeEEeeCCC------CCCChhHHHHHHHHHHHHHHhh
Q 020469 290 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEI 322 (326)
Q Consensus 290 ~~~l~~aGD~~------~g~~vegA~~SG~~aA~~l~~~ 322 (326)
.+++++.||.. .|.+++-|++++..+|+.|...
T Consensus 278 ~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~ 316 (392)
T PRK08243 278 YGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEF 316 (392)
T ss_pred eCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 46899999974 4568999999999999888654
No 224
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=27.14 E-value=32 Score=33.78 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=30.2
Q ss_pred cCCCeEEeeCCCCCC--ChhHHHHHHHHHHHHHHhhhcc
Q 020469 289 VKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILSC 325 (326)
Q Consensus 289 ~~~~l~~aGD~~~g~--~vegA~~SG~~aA~~l~~~l~~ 325 (326)
..++||.|||-...+ .+.-|+..|..||..+...|.+
T Consensus 476 s~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 476 SVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 467899999987653 4788999999999999887654
No 225
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=27.10 E-value=1.2e+02 Score=29.40 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=27.1
Q ss_pred CeeEcceeEeeEEeecCCCCeEEEccC--C-CccccccEEEecc
Q 020469 91 VESKFGVGVGRFEWLEDKNLWSVSGLD--G-QSLGQFNGVVASD 131 (326)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~--g-~~~~~~d~VVla~ 131 (326)
++++++++|.+|+. .+++..+...+ | +....+|.||++.
T Consensus 229 v~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~i~~D~vi~a~ 270 (471)
T PRK06467 229 FNIMLETKVTAVEA--KEDGIYVTMEGKKAPAEPQRYDAVLVAV 270 (471)
T ss_pred eEEEcCCEEEEEEE--cCCEEEEEEEeCCCcceEEEeCEEEEee
Confidence 67899999999986 44556665433 2 1113799999994
No 226
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=25.23 E-value=81 Score=31.38 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=29.1
Q ss_pred ccCCCeEEeeCCCCC--CChhHHHHHHHHHHHHHHhhhc
Q 020469 288 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILS 324 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g--~~vegA~~SG~~aA~~l~~~l~ 324 (326)
...++||.+||-... ..+..|+..|..||..|...|.
T Consensus 271 Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~ 309 (555)
T TIGR03143 271 TNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred cCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHH
Confidence 346789999997532 3578899999999999977663
No 227
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=25.23 E-value=80 Score=32.42 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 84 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 84 ~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
...+..+++++.+.+|..|.+ +.+ .|.++.|..+ .+|.+|+|+
T Consensus 67 dwy~~~~i~L~~~~~v~~idr--~~k--~V~t~~g~~~-~YDkLilAT 109 (793)
T COG1251 67 DWYEENGITLYTGEKVIQIDR--ANK--VVTTDAGRTV-SYDKLIIAT 109 (793)
T ss_pred hhHHHcCcEEEcCCeeEEecc--Ccc--eEEccCCcEe-ecceeEEec
Confidence 445556788999999999986 433 6777788654 899999995
No 228
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=25.03 E-value=1.6e+02 Score=29.08 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=37.1
Q ss_pred CCCCeeEcceeEeeEEeecCCCC---eEEEccCCC-ccccccEEEeccCCCCCcchhhhcCCC
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ-SLGQFNGVVASDKNVVSPRFRDVTGRP 146 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~---w~l~~~~g~-~~~~~d~VVla~~~~pap~~~~ll~~~ 146 (326)
..+.+|+++++|.+|.. ++++ +++...++. .+..++.||+|.-.+-.|+++.+-++.
T Consensus 206 r~nl~i~~~~~V~rI~~--~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINF--EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred CCCeEEEeCCEEEEEEe--cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 34588999999999987 4442 223222121 123678899997666778877765554
No 229
>PLN02546 glutathione reductase
Probab=24.32 E-value=1.3e+02 Score=29.98 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=29.3
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..+++++++++|.+|.. .+++...+.+++++ +..+|.||++.
T Consensus 304 ~~~GV~i~~~~~v~~i~~-~~~g~v~v~~~~g~-~~~~D~Viva~ 346 (558)
T PLN02546 304 SLRGIEFHTEESPQAIIK-SADGSLSLKTNKGT-VEGFSHVMFAT 346 (558)
T ss_pred HHCCcEEEeCCEEEEEEE-cCCCEEEEEECCeE-EEecCEEEEee
Confidence 345788999999999975 12334555554443 33589999994
No 230
>PRK06116 glutathione reductase; Validated
Probab=24.30 E-value=1.1e+02 Score=29.27 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=27.9
Q ss_pred ccCCCeEEeeCCCCC-CChhHHHHHHHHHHHHHHh
Q 020469 288 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 321 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g-~~vegA~~SG~~aA~~l~~ 321 (326)
...++||.+||-..+ ....-|+..|+.+|+.|..
T Consensus 293 Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 293 TNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred cCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhC
Confidence 346799999997643 4678999999999999874
No 231
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=24.27 E-value=1.3e+02 Score=27.79 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=35.1
Q ss_pred CchHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeE---EEccCCCccccccEEEecc
Q 020469 77 GMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS---VSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 77 Gm~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~---l~~~~g~~~~~~d~VVla~ 131 (326)
.+......+.+..++++++++.|.+|+. ..+... +...++..+ ++|.|+++.
T Consensus 179 ~~~~~~~~~l~~~gi~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~-~~d~~~~~~ 233 (415)
T COG0446 179 EVAEELAELLEKYGVELLLGTKVVGVEG--KGNTLVVERVVGIDGEEI-KADLVIIGP 233 (415)
T ss_pred HHHHHHHHHHHHCCcEEEeCCceEEEEc--ccCcceeeEEEEeCCcEE-EeeEEEEee
Confidence 3555555555556788999999999986 434332 345556543 799999983
No 232
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=24.25 E-value=98 Score=29.17 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=33.3
Q ss_pred CchHHHHHHhcC---CCCeeEcceeEeeEEeecCCCC---eEEE-ccCCCc-cccccEEEeccCCCCC
Q 020469 77 GMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL---WSVS-GLDGQS-LGQFNGVVASDKNVVS 136 (326)
Q Consensus 77 Gm~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~---w~l~-~~~g~~-~~~~d~VVla~~~~pa 136 (326)
+...+.+.|.+. .+++|+++++|.+|.. ++++ ..+. ..+|+. ...+++||+|+-+...
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~--e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLIT--EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEE--ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEE--eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 344555555544 3688999999999987 4443 2233 134542 2368899999766543
No 233
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=22.41 E-value=1.1e+02 Score=29.61 Aligned_cols=40 Identities=15% Similarity=0.368 Sum_probs=31.3
Q ss_pred cCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEecc
Q 020469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (326)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~ 131 (326)
+..+.++++++.|+++.. ..+ .|.+.+|+.+ .|+.+|||+
T Consensus 138 ke~gIe~~~~t~v~~~D~--~~K--~l~~~~Ge~~-kys~LilAT 177 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADL--ASK--TLVLGNGETL-KYSKLIIAT 177 (478)
T ss_pred hhcCceEEEcceeEEeec--ccc--EEEeCCCcee-ecceEEEee
Confidence 345678999999999986 444 5667788765 899999994
No 234
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=22.34 E-value=1.4e+02 Score=28.39 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=28.6
Q ss_pred cCCCeEEeeCCCC------CCChhHHHHHHHHHHHHHHhhh
Q 020469 289 VKRRLAICGDFCV------SPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 289 ~~~~l~~aGD~~~------g~~vegA~~SG~~aA~~l~~~l 323 (326)
..++||.+||-.. .....-|+..|..+|+.|...+
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 4678999999754 2466789999999999998766
No 235
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=22.05 E-value=1.7e+02 Score=28.76 Aligned_cols=42 Identities=12% Similarity=-0.032 Sum_probs=27.9
Q ss_pred CCCCeeEcceeEeeEEeecCCCCe-EEEc---cCCC-ccccccEEEecc
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLW-SVSG---LDGQ-SLGQFNGVVASD 131 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w-~l~~---~~g~-~~~~~d~VVla~ 131 (326)
..|++|+++++|.+|.. +++++ .+.. .+|+ ....++.||.|+
T Consensus 140 ~~Ga~i~~~t~V~~i~~--~~~~v~gv~v~~~~~g~~~~i~a~~VVnAa 186 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIR--EGGRVTGVKVEDHKTGEEERIEAQVVINAA 186 (516)
T ss_pred HcCCEEEcCcEEEEEEE--ECCEEEEEEEEEcCCCcEEEEEcCEEEECC
Confidence 45788999999999987 44543 3432 2342 113789999993
No 236
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=21.87 E-value=1.6e+02 Score=28.91 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=31.3
Q ss_pred HHHHhcCCCCeeEcceeEeeEEeecCCCCe---EEEccCCCc-ccccc-EEEeccCCCCC
Q 020469 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQS-LGQFN-GVVASDKNVVS 136 (326)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~i~~~~~~~~w---~l~~~~g~~-~~~~d-~VVla~~~~pa 136 (326)
.+.+.+..+++|+++++|++|.. +++.+ .+. .+|+. ...++ .||||+-+...
T Consensus 180 ~~~~~~~~gv~i~~~t~~~~Li~--~~g~v~Gv~~~-~~g~~~~i~A~k~VIlAtGG~~~ 236 (513)
T PRK12837 180 LAALARFPNARLRLNTPLVELVV--EDGRVVGAVVE-RGGERRRVRARRGVLLAAGGFEQ 236 (513)
T ss_pred HHHHHhCCCCEEEeCCEEEEEEe--cCCEEEEEEEE-ECCcEEEEEeCceEEEeCCCccC
Confidence 33444434688999999999976 44432 222 23432 22565 79999766543
No 237
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.80 E-value=2e+02 Score=26.24 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=30.3
Q ss_pred ccCCCeEEeeCCCCCC--ChhHHHHHHHHHHHHHHhhhcc
Q 020469 288 DVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILSC 325 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~--~vegA~~SG~~aA~~l~~~l~~ 325 (326)
..-++||.|||-.... -+..|.-.|-.||..+.+.|.+
T Consensus 263 TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 263 TSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred cCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhh
Confidence 4577999999998765 3888999999998888776643
No 238
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=21.22 E-value=1.5e+02 Score=28.57 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=27.9
Q ss_pred ccCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHhhh
Q 020469 288 DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 323 (326)
Q Consensus 288 ~~~~~l~~aGD~~~g~~vegA~~SG~~aA~~l~~~l 323 (326)
...++|++||.-..-.+-+-|+.+|..|+..+...+
T Consensus 328 k~~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 328 KKRPNLFFAGQITGVEGYVESAASGLLAGINAARLA 363 (436)
T ss_pred cCCCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHh
Confidence 356899999998866566788889988887776544
No 239
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=21.19 E-value=1.2e+02 Score=30.13 Aligned_cols=41 Identities=17% Similarity=0.025 Sum_probs=27.2
Q ss_pred CCCCeeEcceeEeeEEeecCCCCe-EEEc---cCCC-ccccccEEEec
Q 020469 88 QPGVESKFGVGVGRFEWLEDKNLW-SVSG---LDGQ-SLGQFNGVVAS 130 (326)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w-~l~~---~~g~-~~~~~d~VVla 130 (326)
..|++|+++++|++|.. +++++ .+.. .+|+ ....+|.||.|
T Consensus 161 ~~Ga~i~~~t~V~~i~~--~~~~v~gv~v~d~~~g~~~~i~A~~VVnA 206 (546)
T PRK11101 161 EHGAQILTYHEVTGLIR--EGDTVCGVRVRDHLTGETQEIHAPVVVNA 206 (546)
T ss_pred hCCCEEEeccEEEEEEE--cCCeEEEEEEEEcCCCcEEEEECCEEEEC
Confidence 35788999999999987 54443 2332 2232 11278999999
No 240
>PRK07121 hypothetical protein; Validated
Probab=21.01 E-value=1.8e+02 Score=28.30 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=26.7
Q ss_pred cCCCeEEeeCC---------CCCCChhHHHHHHHHHHHHHHhh
Q 020469 289 VKRRLAICGDF---------CVSPNVEGAILSGLDAASKLTEI 322 (326)
Q Consensus 289 ~~~~l~~aGD~---------~~g~~vegA~~SG~~aA~~l~~~ 322 (326)
+-++||.||.- +.|.++-.|+.+|+.|++.+...
T Consensus 448 pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 448 PIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 35689999953 34668999999999999988653
No 241
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=20.71 E-value=1.9e+02 Score=26.98 Aligned_cols=42 Identities=17% Similarity=0.051 Sum_probs=28.4
Q ss_pred CCCeeEcceeEeeEEeecCCCCeEEEc-cCCCc-cccccEEEecc
Q 020469 89 PGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQS-LGQFNGVVASD 131 (326)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~-~~g~~-~~~~d~VVla~ 131 (326)
.+++++++++|.+|+. .+++...|+. .+|+. ...+|.||-|+
T Consensus 116 ~gv~v~~~~~v~~i~~-~~~~~~~V~~~~~G~~~~i~ad~vVgAD 159 (392)
T PRK08243 116 AGGPIRFEASDVALHD-FDSDRPYVTYEKDGEEHRLDCDFIAGCD 159 (392)
T ss_pred CCCeEEEeeeEEEEEe-cCCCceEEEEEcCCeEEEEEeCEEEECC
Confidence 4678999999999974 1344555555 35642 23789888885
No 242
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=20.59 E-value=1.8e+02 Score=29.05 Aligned_cols=55 Identities=16% Similarity=0.047 Sum_probs=35.6
Q ss_pred CCeeEcceeEeeEEeecCC-CC---eEEEcc-CCCcc-ccccEEEeccCCCCCcchhhhcC
Q 020469 90 GVESKFGVGVGRFEWLEDK-NL---WSVSGL-DGQSL-GQFNGVVASDKNVVSPRFRDVTG 144 (326)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~-~~---w~l~~~-~g~~~-~~~d~VVla~~~~pap~~~~ll~ 144 (326)
+.+|++++.|.+|..+.++ ++ ..+.+. +|+.+ ..++.||||..++-.|+++-+-+
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~ 288 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSG 288 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCC
Confidence 3789999999999873222 22 223332 34322 37999999987777777665443
No 243
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=20.07 E-value=1.7e+02 Score=27.82 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEec
Q 020469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (326)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla 130 (326)
..+-+.|.+.-+.+|. +..|..|.. .++..+-|.+.+|..+ .+|.||+|
T Consensus 99 ~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~-~a~~vVla 147 (392)
T PF01134_consen 99 RAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEI-EADAVVLA 147 (392)
T ss_dssp HHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEE-EECEEEE-
T ss_pred HHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEE-ecCEEEEe
No 244
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=20.05 E-value=2.1e+02 Score=28.66 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=26.5
Q ss_pred ccCCCeEEeeCCCC----------CCChhHHHHHHHHHHHHHHhh
Q 020469 288 DVKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEI 322 (326)
Q Consensus 288 ~~~~~l~~aGD~~~----------g~~vegA~~SG~~aA~~l~~~ 322 (326)
.+-++||.||+-.. |.++-.|+.+|+.+++.+...
T Consensus 369 t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 369 TRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred cccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 45789999998532 236778999999999887654
Done!