Query 020470
Match_columns 326
No_of_seqs 121 out of 1334
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 8.1E-43 1.8E-47 334.2 21.0 278 19-323 159-437 (437)
2 KOG1304 Amino acid transporter 100.0 1.2E-42 2.7E-47 328.6 19.6 267 20-320 177-449 (449)
3 PTZ00206 amino acid transporte 100.0 1.1E-40 2.5E-45 326.0 18.0 277 24-321 184-465 (467)
4 PLN03074 auxin influx permease 100.0 8.5E-39 1.8E-43 312.1 21.6 272 20-326 168-457 (473)
5 KOG4303 Vesicular inhibitory a 100.0 5.3E-38 1.2E-42 282.5 -1.0 285 20-326 236-520 (524)
6 PF01490 Aa_trans: Transmembra 100.0 3.6E-37 7.7E-42 296.5 -2.1 283 19-318 121-409 (409)
7 KOG1305 Amino acid transporter 100.0 9.5E-32 2.1E-36 256.6 19.9 274 25-323 131-408 (411)
8 COG0814 SdaC Amino acid permea 99.7 7.9E-16 1.7E-20 148.6 20.6 270 20-316 126-411 (415)
9 TIGR00837 araaP aromatic amino 99.1 3.6E-09 7.9E-14 101.3 17.1 231 23-288 115-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 98.6 4.7E-06 1E-10 80.3 19.8 172 91-289 181-366 (394)
11 PRK15132 tyrosine transporter 98.5 1.1E-05 2.3E-10 77.8 17.8 192 96-312 183-391 (403)
12 PRK10483 tryptophan permease; 98.3 7.8E-05 1.7E-09 71.9 19.2 168 95-288 193-373 (414)
13 TIGR00814 stp serine transport 98.3 1.7E-05 3.6E-10 76.5 13.6 199 93-306 185-396 (397)
14 PRK09664 tryptophan permease T 98.2 0.00015 3.3E-09 69.8 19.1 191 95-313 194-404 (415)
15 PRK13629 threonine/serine tran 98.2 0.00012 2.6E-09 70.9 18.3 203 95-312 210-438 (443)
16 TIGR03813 put_Glu_GABA_T putat 97.9 0.0014 3.1E-08 64.6 18.9 47 102-151 202-248 (474)
17 PRK10746 putative transport pr 97.8 0.0048 1E-07 60.8 22.1 54 93-149 199-252 (461)
18 PRK11021 putative transporter; 97.7 0.0086 1.9E-07 57.9 21.7 57 92-151 175-231 (410)
19 PRK10655 potE putrescine trans 97.7 0.007 1.5E-07 59.1 21.2 55 94-151 189-243 (438)
20 TIGR03810 arg_ornith_anti argi 97.7 0.0044 9.5E-08 61.1 19.3 59 95-157 196-254 (468)
21 PRK15049 L-asparagine permease 97.7 0.0066 1.4E-07 60.4 20.5 56 93-151 219-274 (499)
22 PRK10644 arginine:agmatin anti 97.6 0.01 2.2E-07 58.1 20.2 54 95-151 192-245 (445)
23 PRK10249 phenylalanine transpo 97.6 0.011 2.4E-07 58.2 20.4 55 93-150 208-262 (458)
24 TIGR00913 2A0310 amino acid pe 97.5 0.043 9.2E-07 54.2 23.7 55 93-150 196-250 (478)
25 PRK10435 cadB lysine/cadaverin 97.5 0.017 3.8E-07 56.3 20.5 59 92-153 185-243 (435)
26 PRK10197 gamma-aminobutyrate t 97.5 0.016 3.5E-07 56.7 20.1 56 93-151 180-235 (446)
27 PF13520 AA_permease_2: Amino 97.4 0.017 3.6E-07 56.0 19.3 108 96-208 190-304 (426)
28 TIGR00905 2A0302 transporter, 97.4 0.029 6.2E-07 55.4 21.1 57 93-153 198-254 (473)
29 PRK11387 S-methylmethionine tr 97.4 0.032 6.9E-07 55.1 21.4 56 93-151 205-260 (471)
30 PRK10580 proY putative proline 97.4 0.054 1.2E-06 53.2 22.0 54 93-149 198-251 (457)
31 PRK11049 D-alanine/D-serine/gl 97.4 0.051 1.1E-06 53.6 21.9 57 93-152 210-266 (469)
32 TIGR00906 2A0303 cationic amin 97.3 0.016 3.6E-07 58.4 18.4 56 93-151 230-285 (557)
33 PRK11357 frlA putative fructos 97.3 0.02 4.3E-07 56.0 17.8 56 93-151 194-249 (445)
34 PRK10238 aromatic amino acid t 97.3 0.023 5E-07 55.8 18.2 52 94-148 200-251 (456)
35 TIGR00909 2A0306 amino acid tr 97.2 0.046 9.9E-07 53.1 19.5 56 94-152 195-250 (429)
36 TIGR00908 2A0305 ethanolamine 97.1 0.032 7E-07 54.5 17.4 55 93-150 190-244 (442)
37 TIGR00907 2A0304 amino acid pe 97.1 0.049 1.1E-06 53.8 18.6 51 95-148 218-268 (482)
38 TIGR00911 2A0308 L-type amino 97.1 0.039 8.5E-07 54.9 17.4 56 93-151 234-289 (501)
39 TIGR00910 2A0307_GadC glutamat 97.0 0.066 1.4E-06 53.5 18.8 49 98-149 198-246 (507)
40 KOG1287 Amino acid transporter 96.9 0.054 1.2E-06 53.0 16.6 250 18-289 128-387 (479)
41 TIGR01773 GABAperm gamma-amino 96.9 0.13 2.8E-06 50.4 19.4 55 94-151 201-255 (452)
42 TIGR00930 2a30 K-Cl cotranspor 96.9 0.19 4.2E-06 53.9 21.5 53 96-151 282-334 (953)
43 PRK15238 inner membrane transp 96.8 0.22 4.7E-06 49.5 20.2 54 94-150 211-264 (496)
44 PRK10836 lysine transporter; P 96.6 0.36 7.9E-06 47.9 20.5 54 95-151 206-259 (489)
45 COG0531 PotE Amino acid transp 96.5 0.32 7E-06 47.4 18.8 61 95-158 202-262 (466)
46 TIGR03428 ureacarb_perm permea 96.1 1.7 3.6E-05 42.9 23.5 53 95-150 214-266 (475)
47 COG1113 AnsP Gamma-aminobutyra 95.4 1.1 2.3E-05 43.7 16.3 180 90-287 199-388 (462)
48 PF00324 AA_permease: Amino ac 94.8 0.086 1.9E-06 52.1 7.4 63 93-158 199-261 (478)
49 TIGR00912 2A0309 spore germina 93.6 3.5 7.6E-05 38.9 15.5 56 101-160 186-241 (359)
50 COG0833 LysP Amino acid transp 92.1 12 0.00027 37.3 16.9 123 20-147 158-284 (541)
51 KOG1286 Amino acid transporter 91.7 3.9 8.6E-05 41.3 13.4 56 93-151 231-286 (554)
52 KOG1289 Amino acid transporter 82.8 56 0.0012 32.9 16.5 73 92-167 250-322 (550)
53 TIGR02358 thia_cytX probable h 79.7 59 0.0013 31.2 14.3 43 112-158 191-233 (386)
54 PRK11375 allantoin permease; P 73.9 98 0.0021 30.7 16.8 22 258-279 373-394 (484)
55 COG1457 CodB Purine-cytosine p 66.6 1.4E+02 0.003 29.5 17.0 49 110-160 210-258 (442)
56 KOG4812 Golgi-associated prote 65.3 12 0.00026 33.3 4.6 76 243-322 161-252 (262)
57 PF05805 L6_membrane: L6 membr 58.5 25 0.00054 30.4 5.4 59 264-322 49-117 (195)
58 TIGR00796 livcs branched-chain 55.7 2E+02 0.0043 27.7 17.7 32 247-284 315-346 (378)
59 PF03845 Spore_permease: Spore 55.4 47 0.001 30.7 7.3 63 94-160 175-237 (320)
60 PF00474 SSF: Sodium:solute sy 53.0 71 0.0015 30.6 8.3 35 21-55 119-153 (406)
61 TIGR00800 ncs1 NCS1 nucleoside 50.6 2.5E+02 0.0054 27.4 15.1 49 108-160 222-274 (442)
62 KOG2082 K+/Cl- cotransporter K 49.0 93 0.002 32.7 8.4 41 20-60 245-287 (1075)
63 PRK13183 psbN photosystem II r 40.2 27 0.00058 22.7 2.0 31 130-160 4-34 (46)
64 CHL00020 psbN photosystem II p 35.8 27 0.00059 22.3 1.6 28 133-160 4-31 (43)
65 COG1914 MntH Mn2+ and Fe2+ tra 33.1 4.2E+02 0.0091 25.9 10.0 54 235-288 325-378 (416)
66 PRK01844 hypothetical protein; 29.9 1.5E+02 0.0032 21.3 4.7 25 299-323 7-31 (72)
67 TIGR00439 ftsX putative protei 29.1 2.3E+02 0.0049 26.4 7.3 28 298-325 280-307 (309)
68 COG0591 PutP Na+/proline sympo 28.2 6.1E+02 0.013 25.2 18.6 60 99-159 240-300 (493)
69 PF02468 PsbN: Photosystem II 28.1 39 0.00084 21.7 1.3 26 135-160 6-31 (43)
70 PRK11026 ftsX cell division AB 27.9 2.6E+02 0.0056 26.0 7.4 27 299-325 281-307 (309)
71 PRK11017 codB cytosine permeas 26.8 5.7E+02 0.012 24.5 13.8 19 256-274 311-329 (404)
72 PRK12768 CysZ-like protein; Re 26.3 4.6E+02 0.01 23.5 8.4 27 118-149 10-36 (240)
73 PF01102 Glycophorin_A: Glycop 25.6 1.3E+02 0.0029 24.0 4.3 24 299-322 66-89 (122)
74 COG4478 Predicted membrane pro 24.3 4.4E+02 0.0095 22.8 7.3 64 258-321 84-149 (210)
75 PF03134 TB2_DP1_HVA22: TB2/DP 21.1 3.5E+02 0.0076 19.9 6.3 23 263-285 2-24 (94)
76 COG3763 Uncharacterized protei 20.6 2.9E+02 0.0062 19.8 4.6 25 299-323 7-31 (71)
77 COG4956 Integral membrane prot 20.0 4.3E+02 0.0094 24.8 6.9 19 260-278 41-59 (356)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-43 Score=334.17 Aligned_cols=278 Identities=41% Similarity=0.691 Sum_probs=244.5
Q ss_pred ccCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHH
Q 020470 19 EYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQ 98 (326)
Q Consensus 19 ~~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (326)
..+.+.|+++++.+++|++++||+++++|+|..|+++++.|+.+.++++..++.+.+..+.+.... .+.. ..++
T Consensus 159 ~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~---~~~~---~~f~ 232 (437)
T KOG1303|consen 159 SLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL---GTIP---TVFT 232 (437)
T ss_pred cccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC---CCCc---chhh
Confidence 456789999999999999999999999999999999999999999999998887653322221211 1111 1189
Q ss_pred HHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHHHH
Q 020470 99 ALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLID 178 (326)
Q Consensus 99 ~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~ 178 (326)
++|+++|+|++|.++||||++||+| ++|+|++..++.+++.+|+.+++.||++|||++++|++.|++ +|.|+.+
T Consensus 233 a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~ 306 (437)
T KOG1303|consen 233 ALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIA 306 (437)
T ss_pred hhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHH
Confidence 9999999999999999999999987 779999999999999999999999999999999999999996 5889999
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCCh
Q 020470 179 LANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 258 (326)
Q Consensus 179 ~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~~ 258 (326)
.+++++.+|++.+|+++.+|..+.+|+....+.++ +. ++....|.+.|+.+++.++++|+.+|+|
T Consensus 307 ~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfF 371 (437)
T KOG1303|consen 307 LANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFF 371 (437)
T ss_pred HHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999988754221 10 0234689999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 020470 259 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA 323 (326)
Q Consensus 259 ~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i-~~~G~v~~v~Gt~~si~~ii~~ 323 (326)
+++++++||+....+++++|+++|++++|++|++++|+.++.. .++|+++++...+.++++++.+
T Consensus 372 g~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 372 GDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999888888 7999999999999999998864
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=328.55 Aligned_cols=267 Identities=22% Similarity=0.279 Sum_probs=228.4
Q ss_pred cCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHH
Q 020470 20 YSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA 99 (326)
Q Consensus 20 ~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (326)
++.+.|+.+..+++++++++||||+|+++|++|++..++...++....+.+..+ . ++ .+....+.++...
T Consensus 177 ~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~----~---~~---~~~~~~~~~~~lf 246 (449)
T KOG1304|consen 177 LSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPP----T---SD---LPAVTGWSGLPLF 246 (449)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCC----c---cc---cccccchhhhHHH
Confidence 789999999999999999999999999999999988766544444333322221 1 11 1122234467789
Q ss_pred HHHHHHhcCCcchhHHHHhhhCCCCcccccHh---hhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHH
Q 020470 100 LGDIAFAYPYSLILIEIQDTLKSPPPANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWL 176 (326)
Q Consensus 100 ~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~---~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~ 176 (326)
+|+.+|||+|++++.|++++||+| ++|. +++..++.+++++|..+|++||++|||++++.|+.|+| ++|+
T Consensus 247 ~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP---~~~l 319 (449)
T KOG1304|consen 247 FGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP---QEIL 319 (449)
T ss_pred HHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC---ccHH
Confidence 999999999999999999999988 9999 99999999999999999999999999999999999999 4899
Q ss_pred HHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCC
Q 020470 177 IDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP 256 (326)
Q Consensus 177 ~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP 256 (326)
.+.+++++++.++.+||+|.+|..+.+|+.+.+|..++ |.++....+|+.++++++.+|..+|
T Consensus 320 ~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA~~iP 382 (449)
T KOG1304|consen 320 SQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIAVAVP 382 (449)
T ss_pred HHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999887653211 1247788999999999999999999
Q ss_pred ChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020470 257 YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA---WTRKWVMLRVFSYVCFIVSTFGLVGSIQGI 320 (326)
Q Consensus 257 ~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~---~~~~~~~~~~i~~~G~v~~v~Gt~~si~~i 320 (326)
+++++++++||++++.+.+++|++++++..+++. +.++++.|.+++++|+++++.|||+|++++
T Consensus 383 nL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 383 NLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred cHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999999999999999865432 334567899999999999999999999864
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.1e-40 Score=325.97 Aligned_cols=277 Identities=16% Similarity=0.131 Sum_probs=210.4
Q ss_pred hhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccc--cccccCchhhHHHHHHHHHH
Q 020470 24 YYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF--SGVSTTTSIEKMWLVAQALG 101 (326)
Q Consensus 24 ~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 101 (326)
.+.+++..+++|++++|++++|+|+|.+|.++.+...+++++.....+..++..+.+. .+.++........+++.++|
T Consensus 184 ~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~alg 263 (467)
T PTZ00206 184 LTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLG 263 (467)
T ss_pred eeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhh
Confidence 3455667788999999999999999999976554433333333333322111100000 00000001111236788999
Q ss_pred HHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHHHHHHH
Q 020470 102 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLAN 181 (326)
Q Consensus 102 ~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~~~ 181 (326)
+++|||.||.+.+++++||||| +.++|.+++..++.++.++|..+|++||++|||++++|++.|+++ .++....+++
T Consensus 264 i~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~ 340 (467)
T PTZ00206 264 VFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGF 340 (467)
T ss_pred HHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHH
Confidence 9999999999999999999976 449999999999999999999999999999999999999999942 2345567888
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCChHHH
Q 020470 182 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQV 261 (326)
Q Consensus 182 ~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~~~~v 261 (326)
+++.+.++.+||++.+|+|+.+++.+..+ .++ .+ +++|...+..++++++++|+.+|+++.+
T Consensus 341 ~~~~~~v~~sypL~~~p~r~~i~~~~~~~--~~~---------~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~v 402 (467)
T PTZ00206 341 VGVLVKLFVSYALLGMACRNALYDVIGWD--ARK---------VA-------FWKHCIAVVTLSVVMLLCGLFIPKINTV 402 (467)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhCCC--ccc---------Cc-------hhhHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 88999999999999999999998876432 100 01 2456556667777889999999999999
Q ss_pred HHHHhhhhhhhHHHHhhHHHHHHhc---CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020470 262 LGVIGGVIFWPLTIYFPVEMYFKQM---NIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 321 (326)
Q Consensus 262 ~~lvGa~~~~~l~filP~l~yl~~~---~~~~~~~~~~~~~~i~~~G~v~~v~Gt~~si~~ii 321 (326)
++++||++++.++|++|+++|++.. +++....+|+.+++++++|++.+++|||+|+++.+
T Consensus 403 l~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 403 LGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 9999999999999999999999842 22222234567999999999999999999999876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=8.5e-39 Score=312.10 Aligned_cols=272 Identities=18% Similarity=0.199 Sum_probs=216.4
Q ss_pred cCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHH
Q 020470 20 YSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA 99 (326)
Q Consensus 20 ~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (326)
.+.+.|+++++++++|++++|++|+++++|.+|..+++.+...++..+..++.. ++++ .+.+.++...+.+
T Consensus 168 ~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~--------~~~~-~~~~~~~~~~f~~ 238 (473)
T PLN03074 168 LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQV--------EGVK-HSGPTKLVLYFTG 238 (473)
T ss_pred cCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCC-CCCchhHHHHHHH
Confidence 578999999999999999999999999999999776554322222222222211 1111 0112345567788
Q ss_pred HHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccc--cccccccCCCCChHHH
Q 020470 100 LGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP--GNLLTGFGFYEPYWLI 177 (326)
Q Consensus 100 ~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~--~~il~n~~~~~~~~~~ 177 (326)
+++++|+|+||.++|+|++||||| ++|+++...++..++.+|..+|+.||++|||+++ ++.+.|+| ++. ..
T Consensus 239 ~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~ 311 (473)
T PLN03074 239 ATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WR 311 (473)
T ss_pred HHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HH
Confidence 889999999999999999999988 8899999999999999999999999999999976 46687888 233 36
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCC
Q 020470 178 DLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY 257 (326)
Q Consensus 178 ~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~ 257 (326)
+++++++.++++.+|+++.+|..+..|+....+ +. +..+.|.++|+.++++++++|+.+|+
T Consensus 312 ~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~-----------------k~~~~r~~~R~~lv~~~~~iA~~IP~ 372 (473)
T PLN03074 312 DAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DT-----------------KSICLRALARLPVVVPIWFLAIIFPF 372 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--cc-----------------ccHHHHHHHHHHHHHHHHHHHHHccc
Confidence 788999999999999999999999888865421 10 12467899999999999999999999
Q ss_pred hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcc-------------hhHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 020470 258 FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE-------------AWTRK--WVMLRVFSYV-CFIVSTFGLVGSIQGII 321 (326)
Q Consensus 258 ~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~-------------~~~~~--~~~~~~i~~~-G~v~~v~Gt~~si~~ii 321 (326)
|+++++|+||++++.++|++|+++|++.++++ .+.++ .++|++++++ |+++++.|||+|+++|+
T Consensus 373 fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii 452 (473)
T PLN03074 373 FGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFV 452 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHH
Confidence 99999999999999999999999999854321 11111 2678888876 55556899999999999
Q ss_pred HhhcC
Q 020470 322 SAKLS 326 (326)
Q Consensus 322 ~~~~~ 326 (326)
+++++
T Consensus 453 ~~~~~ 457 (473)
T PLN03074 453 RQIDT 457 (473)
T ss_pred Hhhhh
Confidence 99875
No 5
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-38 Score=282.51 Aligned_cols=285 Identities=19% Similarity=0.223 Sum_probs=242.0
Q ss_pred cCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHH
Q 020470 20 YSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA 99 (326)
Q Consensus 20 ~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (326)
++++.|+++.+..++|.+|+|+||.++-+|++++++.++..++++.+|+....+.. ... .+...+..++..+
T Consensus 236 vd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~-----wsk---v~Fsidi~~fPis 307 (524)
T KOG4303|consen 236 VDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWS-----WSK---VTFSIDINTFPIS 307 (524)
T ss_pred ccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cee---EEEEEEcccCceE
Confidence 78999999999999999999999999999999999999998888888886554332 121 1222333355578
Q ss_pred HHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHHHHH
Q 020470 100 LGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDL 179 (326)
Q Consensus 100 ~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~ 179 (326)
+|+++|+|+.|..+|+++.+|++| .+|...+.++.+...++-..+|..||++||+++|..|.+|+| +.....+
T Consensus 308 vG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~ 380 (524)
T KOG4303|consen 308 VGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKIL 380 (524)
T ss_pred EEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhh
Confidence 999999999999999999999987 788888999999999999999999999999999999999998 4456788
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCChH
Q 020470 180 ANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN 259 (326)
Q Consensus 180 ~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~~~ 259 (326)
+++++++..+.|||+-.+...+.+|+.++...|+..+. .-++ |+.+.+-|.+..|+.+++++.++|+.+|+|.
T Consensus 381 VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fp-scys------~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~ 453 (524)
T KOG4303|consen 381 VNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFP-SCYS------PDGSLKEWGLTLRIILVVFTLLMAISVPHFV 453 (524)
T ss_pred hhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCc-eeeC------CCcchhhheeeeeeHHHHHHHHHHHHhHHHH
Confidence 99999999999999988888899998777644544331 1111 3344456678899999999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020470 260 QVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS 326 (326)
Q Consensus 260 ~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i~~~G~v~~v~Gt~~si~~ii~~~~~ 326 (326)
.+|+++|++.++.++|+.|++||++++.+..-+.++..+..++++|...+|.|.|.|..++|+++++
T Consensus 454 ~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 454 ELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred HHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence 9999999999999999999999999876654445667899999999999999999999999999875
No 6
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=3.6e-37 Score=296.51 Aligned_cols=283 Identities=24% Similarity=0.318 Sum_probs=219.4
Q ss_pred ccCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHH
Q 020470 19 EYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQ 98 (326)
Q Consensus 19 ~~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (326)
..++..|.++.+++++|++++|++++|++.|.+|.++.+.+..+.+.........+ +.+....+ .....+.++.+.
T Consensus 121 ~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~ 196 (409)
T PF01490_consen 121 FISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGE-PSGVPSPP---VWPFISFSGFFS 196 (409)
T ss_pred cccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeeeeccc-cccccccc---ccccchhhHHHH
Confidence 36778899999999999999999999999999998765432222222222222111 11111010 112345678999
Q ss_pred HHHHHHHhcCCcchhHHHHhhhCCCCccc-ccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHHH
Q 020470 99 ALGDIAFAYPYSLILIEIQDTLKSPPPAN-QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLI 177 (326)
Q Consensus 99 ~~~~~~faf~~h~~~~~i~~~m~~p~p~~-~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~ 177 (326)
++|+++|||.||.++|++++|||+| ++ ++++++...++.+++++|..+|++||++|||++++|+++|+| ++++..
T Consensus 197 ~~~i~~faf~~~~~~~~i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~ 272 (409)
T PF01490_consen 197 AFGIIIFAFSCHPNLPPIQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLI 272 (409)
T ss_pred hhhhhhhhhhcccccceeeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Cccccc
Confidence 9999999999999999999999976 33 456699999999999999999999999999999999999999 344678
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCC
Q 020470 178 DLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY 257 (326)
Q Consensus 178 ~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~ 257 (326)
.++++++.++++.+||++.+|.++.+|+.+..+.+..+..++ + + .+.+++|..+|+.++++++++|+.+|+
T Consensus 273 ~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~----~-~----~~~~~~~~~~~~~~~~~~~~iA~~vp~ 343 (409)
T PF01490_consen 273 IIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK----N-T----PSSRWLRYLIRIILVLLSFLIAIFVPN 343 (409)
T ss_pred ccccccchhhhhhccccccchhHhhhhhheeccccccccccc----c-c----cccceeeeeeecchhhhhhhhhhhccc
Confidence 899999999999999999999999999988653000000000 0 0 122477899999999999999999999
Q ss_pred hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 020470 258 FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKW-----VMLRVFSYVCFIVSTFGLVGSIQ 318 (326)
Q Consensus 258 ~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~-----~~~~~i~~~G~v~~v~Gt~~si~ 318 (326)
++++++++||++++.++|++|+++|+|.+++++.+.++ ..+++.+++|++.++.|||.+++
T Consensus 344 ~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 409 (409)
T PF01490_consen 344 FGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSIQ 409 (409)
T ss_pred hhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHcC
Confidence 99999999999999999999999999987665432222 23567778999999999998863
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-32 Score=256.57 Aligned_cols=274 Identities=16% Similarity=0.227 Sum_probs=215.8
Q ss_pred hHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHHHHHHH
Q 020470 25 YMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA 104 (326)
Q Consensus 25 ~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (326)
|.+....+..||++.|++++|++.|.++.........++++....... ..+ +.+. ..++...+++.+.++|+++
T Consensus 131 ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~-~~~-~~~~----~~~~~~~~~~~~~~~pi~~ 204 (411)
T KOG1305|consen 131 ILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPC-ALG-RLSY----LVPNLSSFSSLFYALPIFV 204 (411)
T ss_pred eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccC-Cccc----ccCCcchhhhhhhhhhhhh
Confidence 677788888999999999999999999876655443333333222111 000 1100 0112222368889999999
Q ss_pred HhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCCh----HHHHHH
Q 020470 105 FAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPY----WLIDLA 180 (326)
Q Consensus 105 faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~----~~~~~~ 180 (326)
|||.||.++.++++||||| +++++.++...+...++.+|..+|.+||+.|||++++|++.++|...+. +....+
T Consensus 205 faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~v 282 (411)
T KOG1305|consen 205 FAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCV 282 (411)
T ss_pred eeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHH
Confidence 9999999999999999966 7799999999999999999999999999999999999999999853222 135788
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHHHHHHHCCChHH
Q 020470 181 NAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQ 260 (326)
Q Consensus 181 ~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lAi~iP~~~~ 260 (326)
+..+.++.+..+|+..+|+|..++......+++.+. + .+.++.+++..++.++.+.|+.+|++++
T Consensus 283 r~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~---------~------s~~r~~~itl~ll~~~~l~ai~~p~i~~ 347 (411)
T KOG1305|consen 283 RLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTS---------F------SGKRHFVITLLLLIFTFLLAIFVPSIGT 347 (411)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCC---------c------cceehhHHHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999998887765433110 1 1245577788888999999999999999
Q ss_pred HHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020470 261 VLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 323 (326)
Q Consensus 261 v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i~~~G~v~~v~Gt~~si~~ii~~ 323 (326)
+.+++||++++.++|++|+++|++..|. .+++....+...++|+..++.|+..-+.++..+
T Consensus 348 i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 348 IFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998765 223345567777899999999999988887754
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.71 E-value=7.9e-16 Score=148.56 Aligned_cols=270 Identities=14% Similarity=0.166 Sum_probs=177.6
Q ss_pred cCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHH
Q 020470 20 YSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA 99 (326)
Q Consensus 20 ~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (326)
.+++.+.+++..++.++++.++...+++.|.+...+....+... .+.....+. ......+... ...+..+..+
T Consensus 126 ~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~----~~~~~~~~~--~~l~~~~~~~-~~~~~~~~~~ 198 (415)
T COG0814 126 LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLV----VYLIPHWNP--ANLFALPSAS-QSFWKYLLLA 198 (415)
T ss_pred cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH----HHHhcccCH--HHHhcccccc-hhhHHHHHHH
Confidence 56788889999999999999999999999998765543322221 222221111 0011100000 2344567789
Q ss_pred HHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccccCCCCChHHHHH
Q 020470 100 LGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDL 179 (326)
Q Consensus 100 ~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~ 179 (326)
+|+++|||+||+++|++++|||++ ++++.+|+...+..+..++|..++.++|..+|+.+.++++++.++ ++... .
T Consensus 199 ipv~vfsF~~h~~i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~--~~~~l-~ 273 (415)
T COG0814 199 IPVFVFSFGFHGNIPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ--NISLL-S 273 (415)
T ss_pred hhHHHhhhhCCccchHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCc--hHHHH-H
Confidence 999999999999999999999965 445599999999999999999999999999999999999999973 22211 1
Q ss_pred HHHHHHHHHHHhhhhcccc--------------HHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchh--hhHHHH
Q 020470 180 ANAFIVIHLVGGYQVYSQP--------------IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLR--LCFRTV 243 (326)
Q Consensus 180 ~~~~~~l~~~~sypl~~~p--------------~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r--~~~r~~ 243 (326)
+..........+++.+.++ .+|.+++..+. .+++ + .++.++.+ ......
T Consensus 274 ~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~~----------~---~r~~~~~~~~~~~~i~ 338 (415)
T COG0814 274 ALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNSK----------P---GRKKTGLLTFLPPLIF 338 (415)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccCc----------c---cchhhhhhhHHHHHHH
Confidence 1112222222333333333 33444444432 0100 0 01111222 223445
Q ss_pred HHHHHHHHHHHCCChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020470 244 YVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGS 316 (326)
Q Consensus 244 ~v~~~~~lAi~iP~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i~~~G~v~~v~Gt~~s 316 (326)
.+......+...|..+.+++.+|+.....+.++.|...+.|....+.+..++..+.+++++|+..++.-.+..
T Consensus 339 ~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 339 ALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 5567778899999999999999999999999999999887754332222111356777788888877666544
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.10 E-value=3.6e-09 Score=101.27 Aligned_cols=231 Identities=10% Similarity=0.016 Sum_probs=143.9
Q ss_pred chhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCccccccccccCchhhHHHHHHHHHHH
Q 020470 23 TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGD 102 (326)
Q Consensus 23 ~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (326)
+.+.+++.+++.++.. +..|..+.++.+.....+....+.++.+..+. +. ....... .....+.+...+++.
T Consensus 115 ~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~---~~--~~~~~~~--~~~~~~~~~~~a~~~ 186 (381)
T TIGR00837 115 RAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALVFSGLLPHV---KG--DLLLDVA--LDTSYWPYILSALPV 186 (381)
T ss_pred HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cH--HHHhcCc--cccccHHHHHHHHHH
Confidence 3344444445555544 45677777776655444333222222222211 00 0000000 001123366788999
Q ss_pred HHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccccccc-------c------cccccC
Q 020470 103 IAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG-------N------LLTGFG 169 (326)
Q Consensus 103 ~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~-------~------il~n~~ 169 (326)
..++|++|.+++++.+|+++| +|+.+|+...+..+++++|..+........+.+.-. + .+++.-
T Consensus 187 ~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 263 (381)
T TIGR00837 187 CLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVL 263 (381)
T ss_pred HHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhc
Confidence 999999999999999999853 389999999999999999998755544444332211 1 111110
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHHHH
Q 020470 170 FYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVT 249 (326)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~ 249 (326)
.+.+...+..++..+.+.+++.-.....+|.+.+.++++. + + ..|.....+..+...
T Consensus 264 --~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~-~-----------------~---~~~~~~~~~~~~~pl 320 (381)
T TIGR00837 264 --KSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD-S-----------------K---KGRFKTGLLTFLPPL 320 (381)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-c-----------------c---CCCchhhhhhHHhHH
Confidence 1334455666677777788887777777787776665421 0 0 113333455567788
Q ss_pred HHHHHCCChH-HHHHHHhhhhhhhHHHHhhHHHHHHhcCc
Q 020470 250 AIAMSFPYFN-QVLGVIGGVIFWPLTIYFPVEMYFKQMNI 288 (326)
Q Consensus 250 ~lAi~iP~~~-~v~~lvGa~~~~~l~filP~l~yl~~~~~ 288 (326)
++|...|+.. ..++..| +.++.+.+++|++++++.||+
T Consensus 321 ~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 321 VFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred HHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 8999999987 8999999 888999999999999987654
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.62 E-value=4.7e-06 Score=80.29 Aligned_cols=172 Identities=19% Similarity=0.256 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhh--hchhcc---------ccccc
Q 020470 91 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYA---------AFGDN 159 (326)
Q Consensus 91 ~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~--g~~GY~---------~fG~~ 159 (326)
.++...+.++|+..+||+.|..+|++.+.+++ + .++.+|++..+..+..++|+.. .+.|=+ .-|++
T Consensus 181 ~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~-d--~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~ 257 (394)
T PF03222_consen 181 SDWSYILPALPVLVFSFGFHNIVPSLVKYLGG-D--PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGN 257 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc-c--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Confidence 34446678999999999999999999999984 2 2789999999888888888774 333311 11111
Q ss_pred ccc--ccccccCCCCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchh
Q 020470 160 TPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLR 237 (326)
Q Consensus 160 ~~~--~il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r 237 (326)
..+ ..+.+.. ++.+...++.++-.+.+.+||-=...-.+|.+++.++. +++ ...|
T Consensus 258 ~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r 314 (394)
T PF03222_consen 258 VSALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGR 314 (394)
T ss_pred hHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccch
Confidence 111 1222222 23444555667777777777754555677877776653 111 1223
Q ss_pred hhHHHHHHHHHHHHHHHCCC-hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcc
Q 020470 238 LCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE 289 (326)
Q Consensus 238 ~~~r~~~v~~~~~lAi~iP~-~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~ 289 (326)
.....+..+..+++|...|+ |-..+++.| ...+.+..++|+++.+|.||++
T Consensus 315 ~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~ 366 (394)
T PF03222_consen 315 LKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK 366 (394)
T ss_pred HHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence 33334455667888999986 678899999 8889999999999999976543
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.47 E-value=1.1e-05 Score=77.81 Aligned_cols=192 Identities=12% Similarity=0.116 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccc-----ccc-----ccc
Q 020470 96 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-----TPG-----NLL 165 (326)
Q Consensus 96 ~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~-----~~~-----~il 165 (326)
+..++|++.+||+.|..+|++.+.+++ ++ ++.+|+...+..+..++|+..=..-...-+.+ .++ +++
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~-~~--~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l 259 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGG-NI--RKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL 259 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCc-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence 667999999999999999999999874 23 78999999999898888877422222222211 111 223
Q ss_pred cccCC-CCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHH
Q 020470 166 TGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVY 244 (326)
Q Consensus 166 ~n~~~-~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~ 244 (326)
..+.. .+..+...++.++..+.+.+||-=.....+|.+.+.++.+ ++ ...|.....+.
T Consensus 260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~~-------------------~~~r~~~~~l~ 318 (403)
T PRK15132 260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--NT-------------------VGGRLQTGLIT 318 (403)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cc-------------------ccCCchhehhh
Confidence 33321 0234555566666666666776544456677777766432 10 01244444566
Q ss_pred HHHHHHHHHHCCC-hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcc---hhH--HHHHHHHHHHHHHHHHHHHH
Q 020470 245 VVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE---AWT--RKWVMLRVFSYVCFIVSTFG 312 (326)
Q Consensus 245 v~~~~~lAi~iP~-~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~---~~~--~~~~~~~~i~~~G~v~~v~G 312 (326)
.+..+++|..-|+ |....++.|. ..+.+.+++|+++-+|.+|.+ +.. ..+..+++++++|++..+.-
T Consensus 319 flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~ 391 (403)
T PRK15132 319 FLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQ 391 (403)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHH
Confidence 7888899999997 6667888775 578999999999999877543 211 02345667767777665543
No 12
>PRK10483 tryptophan permease; Provisional
Probab=98.31 E-value=7.8e-05 Score=71.91 Aligned_cols=168 Identities=13% Similarity=0.085 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhh--hchhccc---------cccccccc
Q 020470 95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYAA---------FGDNTPGN 163 (326)
Q Consensus 95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~--g~~GY~~---------fG~~~~~~ 163 (326)
....++|++.+||+.|.++|++.+.+++ ++ ++.+|++..+..+..++|+.- ...|=+. -|+++ +.
T Consensus 193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~-d~--~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~ 268 (414)
T PRK10483 193 YLLMTLPFCLASFGYHGNVPSLMKYYGK-DP--KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DV 268 (414)
T ss_pred HHHHHHHHHHhhccCCCcchHHHHHhCc-CH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HH
Confidence 4668999999999999999999999885 23 689999999999999999883 2222221 12111 11
Q ss_pred cccccCCC-CChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHH
Q 020470 164 LLTGFGFY-EPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRT 242 (326)
Q Consensus 164 il~n~~~~-~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~ 242 (326)
.+..+... ++.+...++.++..+.+.+||-=.....+|.+.+.++.+ +++ ..|...-.
T Consensus 269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~~-------------------~~r~~~~~ 327 (414)
T PRK10483 269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD--DSA-------------------MGRFKTAL 327 (414)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeeh
Confidence 11111110 233444556666666667776544556678777777542 110 11222334
Q ss_pred HHHHHHHHHHHHCCC-hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCc
Q 020470 243 VYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI 288 (326)
Q Consensus 243 ~~v~~~~~lAi~iP~-~~~v~~lvGa~~~~~l~filP~l~yl~~~~~ 288 (326)
+..+...++|...|+ |=..++..|.. .+.+.-++|+++-++.||+
T Consensus 328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 566788899999998 77899999976 6778889999999998764
No 13
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.26 E-value=1.7e-05 Score=76.47 Aligned_cols=199 Identities=9% Similarity=0.088 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHH----hhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccccc-c----cc
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQ----DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-P----GN 163 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~----~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~-~----~~ 163 (326)
+.+...+++...+||.+|..+++.. +|.+||+.+.+|.+|+...+..+.+++|+..-...-...+.+. + +|
T Consensus 185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n 264 (397)
T TIGR00814 185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN 264 (397)
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence 3467789999999999999999987 3344333235788899988888888888876544444444332 1 12
Q ss_pred --cccccCC-CCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhh-hCCCCCCCCCccccCCCCCCcccccchhhh
Q 020470 164 --LLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLC 239 (326)
Q Consensus 164 --il~n~~~-~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~ 239 (326)
.+..+.. .+..+...+..+.-.+.+..|+-=.....+|.++..+.+ +.++++ + .+.+..+..
T Consensus 265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~--------~------~~~~~~~~~ 330 (397)
T TIGR00814 265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK--------K------INIRKLNRA 330 (397)
T ss_pred cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc--------c------cCHHHHHHH
Confidence 1221110 012343444555555566677666667888998887732 111110 0 011234444
Q ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHHHHHHH
Q 020470 240 FRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCF 306 (326)
Q Consensus 240 ~r~~~v~~~~~lAi~iP~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i~~~G~ 306 (326)
......+.++..|+.=|++=++++-+|+-....+.|++|...-.|....++.+ .+..|+++.+.|+
T Consensus 331 ~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~-~~~~~~fv~~~g~ 396 (397)
T TIGR00814 331 IAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYR-GRISNVFVTVIGL 396 (397)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhC-CCcchheeEeeec
Confidence 55666778888999999999999988888889999999998877753322221 1124666555553
No 14
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.22 E-value=0.00015 Score=69.85 Aligned_cols=191 Identities=11% Similarity=0.060 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhh--hchhccc---------ccccccc-
Q 020470 95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYAA---------FGDNTPG- 162 (326)
Q Consensus 95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~--g~~GY~~---------fG~~~~~- 162 (326)
.+..++|++.+||+.|+++|++.+.+++ ++ ++.+|++..+..+..++|++. .+.|=+. -|+++..
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~-d~--~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l 270 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGK-RK--DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL 270 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCc-cH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence 3567899999999999999999999884 23 678888888888888888653 3333211 2222211
Q ss_pred --ccccccCCCCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhH
Q 020470 163 --NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCF 240 (326)
Q Consensus 163 --~il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~ 240 (326)
....+. +..+...++.++..+.+.+||-=.....+|.+.+.++.+ +++ ..|...
T Consensus 271 ~~s~~~~~---~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~~-------------------~~r~~~ 326 (415)
T PRK09664 271 VKSFLGTK---QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID--NSH-------------------GGRFKT 326 (415)
T ss_pred HHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceee
Confidence 111121 234555566666666777776544456677777766542 110 123323
Q ss_pred HHHHHHHHHHHHHHCCC-hHHHHHHHhhhhhhhHHHHhhHHHHHHhcCc-chhH----HHHHHHHHHHHHHHHHHHHHH
Q 020470 241 RTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI-EAWT----RKWVMLRVFSYVCFIVSTFGL 313 (326)
Q Consensus 241 r~~~v~~~~~lAi~iP~-~~~v~~lvGa~~~~~l~filP~l~yl~~~~~-~~~~----~~~~~~~~i~~~G~v~~v~Gt 313 (326)
-.+..+...++|...|+ |=..++..|.. .+.+.-++|+++-+|.||+ +... ..+....+.+.+|++..+.-.
T Consensus 327 ~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~~~ 404 (415)
T PRK09664 327 VLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWF 404 (415)
T ss_pred ehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999998 77899999986 5688889999999998764 2110 112334455566766655433
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.22 E-value=0.00012 Score=70.89 Aligned_cols=203 Identities=10% Similarity=0.043 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhhhCC-------CCcccccHhhhhhhhhhHHHHHhhhhhchhcccccccc-------
Q 020470 95 LVAQALGDIAFAYPYSLILIEIQDTLKS-------PPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT------- 160 (326)
Q Consensus 95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~-------p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~------- 160 (326)
....++|++.|||+-|+.+|++...+|+ ++...+|-+|++..+..+..++|++.-+.--..-+.+.
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 4567899999999999999998887432 12124788899999988888888876544443333322
Q ss_pred ccccccc----cCCC-CC-----hHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhh--hCCCCCCCCCccccCCCCC
Q 020470 161 PGNLLTG----FGFY-EP-----YWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE--KFPENGFLNNEFFLKPPLM 228 (326)
Q Consensus 161 ~~~il~n----~~~~-~~-----~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~--~~~~~~~~~~~~~~~~p~~ 228 (326)
+.+++.. ++.. +. .+...++.+...+.+..||-=.....+|.++....+ ..++++ +.
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~--------~~--- 358 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT--------KV--- 358 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------cc---
Confidence 1222222 2200 01 223344444545555666644555778888887742 111110 00
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHCCChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcchhHHHHHHHHHHHHHHHHH
Q 020470 229 PAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIV 308 (326)
Q Consensus 229 ~~~~~~~~r~~~r~~~v~~~~~lAi~iP~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i~~~G~v~ 308 (326)
+.+..+........+.++..|+.=|++=++++-+|+-....+.|++|...-.|....++.+ .+..|+++.+.|++.
T Consensus 359 ---~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~ 434 (443)
T PRK13629 359 ---SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLT 434 (443)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHH
Confidence 1124455556677788889999999999999988888889999999998877753322221 123577777777665
Q ss_pred HHHH
Q 020470 309 STFG 312 (326)
Q Consensus 309 ~v~G 312 (326)
...-
T Consensus 435 i~~~ 438 (443)
T PRK13629 435 ILNI 438 (443)
T ss_pred HHHH
Confidence 5433
No 16
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.86 E-value=0.0014 Score=64.65 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=40.4
Q ss_pred HHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 102 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 102 ~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
.+.|+|.|-......-+|+|||+ |+.+|++..+..++.++|....+.
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~ 248 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLA 248 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999882 679999999999999999876544
No 17
>PRK10746 putative transport protein YifK; Provisional
Probab=97.84 E-value=0.0048 Score=60.76 Aligned_cols=54 Identities=19% Similarity=0.095 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhh
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 149 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g 149 (326)
+.++..++....|+|.|-......-.|+|||+ |+++|+...+.....++|....
T Consensus 199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~ 252 (461)
T PRK10746 199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAI 252 (461)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888899999999999999999999882 6899998877777777777653
No 18
>PRK11021 putative transporter; Provisional
Probab=97.74 E-value=0.0086 Score=57.92 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 92 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 92 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
++.+...++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|+.....
T Consensus 175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 344677788899999999999999999999872 679999999999999999997653
No 19
>PRK10655 potE putrescine transporter; Provisional
Probab=97.73 E-value=0.007 Score=59.06 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
.+...++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|......
T Consensus 189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~ 243 (438)
T PRK10655 189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNV 243 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888999999999999999999882 689999999999999999886543
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.70 E-value=0.0044 Score=61.11 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccc
Q 020470 95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 157 (326)
Q Consensus 95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG 157 (326)
++..++....|+|.|-......-.|.||+ |+.+|+...+...+.++|..+.+..+...+
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 45567888999999999988888888854 899999999999999999988765554433
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=97.69 E-value=0.0066 Score=60.44 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
+.+.+.++....|+|.|-......-.|+|||+ |+.+|++..++....++|+.....
T Consensus 219 ~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~ 274 (499)
T PRK15049 219 LLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVL 274 (499)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788999999999999999999882 579999988888888888876544
No 22
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.60 E-value=0.01 Score=58.09 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
.+..++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|..+.+.
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~ 245 (445)
T PRK10644 192 AIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTA 245 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 455677788999999999999999999882 679999999999999999988665
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=97.60 E-value=0.011 Score=58.20 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhc
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 150 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~ 150 (326)
+.++..++....|+|.|-......-+|+|||+ |+.+|++..+.....++|.....
T Consensus 208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~ 262 (458)
T PRK10249 208 WNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLV 262 (458)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567788899999999999999999999872 67999999999889999977533
No 24
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.53 E-value=0.043 Score=54.18 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhc
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 150 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~ 150 (326)
+.++..++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|.....
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999872 68999999999999999998654
No 25
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.52 E-value=0.017 Score=56.32 Aligned_cols=59 Identities=12% Similarity=0.038 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhc
Q 020470 92 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 153 (326)
Q Consensus 92 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY 153 (326)
...++..++....|+|.|-......-+|+|||+ |+.+|+...+..++.++|....+.-.
T Consensus 185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888899999999999999999999872 67999999999999999998766543
No 26
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.50 E-value=0.016 Score=56.74 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
+.+...++....|+|.|-......-.|+|||+ |+.+|+...+.....++|....+.
T Consensus 180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999999999872 679999988888888899885443
No 27
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.45 E-value=0.017 Score=55.98 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccc---cccccccC---
Q 020470 96 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP---GNLLTGFG--- 169 (326)
Q Consensus 96 ~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~---~~il~n~~--- 169 (326)
.+.+++...|+|.|-......-+|+|| |+.+|++..+..++.++|......-....+++.. ++..+...
T Consensus 190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (426)
T PF13520_consen 190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLA 264 (426)
T ss_dssp HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHH
T ss_pred hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhh
Confidence 467788899999999999999999873 6899999999999999999986655555544321 12111110
Q ss_pred -CCCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHh
Q 020470 170 -FYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWIC 208 (326)
Q Consensus 170 -~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~ 208 (326)
.....+...+..+...+..+.+.........+.++.+-+
T Consensus 265 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 265 SAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhcchhhccccccc
Confidence 001123334444555555555554444444555555544
No 28
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.44 E-value=0.029 Score=55.42 Aligned_cols=57 Identities=9% Similarity=0.074 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhc
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 153 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY 153 (326)
+..+..++....|+|.|-......-+|+||+ |+.+|++..+..++.++|........
T Consensus 198 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~----r~iPrai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 198 FSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK----SDVGKATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999999999999999963 88999999999999999988765433
No 29
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.44 E-value=0.032 Score=55.09 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
..+...++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|......
T Consensus 205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~ 260 (471)
T PRK11387 205 GLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLV 260 (471)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788999999999999999999872 679999999999999999887654
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.37 E-value=0.054 Score=53.23 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhh
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 149 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g 149 (326)
+.+...++....|+|.|-......-+|+|||+ |+.+|+...+......+|....
T Consensus 198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~ 251 (457)
T PRK10580 198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTL 251 (457)
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788889999999999999999999872 5689988877777777776654
No 31
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.37 E-value=0.051 Score=53.62 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchh
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 152 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~G 152 (326)
+.+.+.++....|+|.|-......-+|+|||+ |+.+|++..+.....++|......-
T Consensus 210 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~ 266 (469)
T PRK11049 210 LSGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVI 266 (469)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888899999999999999999999872 5799999877777788887665443
No 32
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.35 E-value=0.016 Score=58.44 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
+.+++.+.....|+|.|-......-.|+|||+ |+.+|+...+..+++++|..+...
T Consensus 230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~ 285 (557)
T TIGR00906 230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA 285 (557)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999999999999882 679999999999999999987654
No 33
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.29 E-value=0.02 Score=56.02 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
+.+...++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|......
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999999999999999872 679999999999999999887553
No 34
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.28 E-value=0.023 Score=55.85 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhh
Q 020470 94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC 148 (326)
Q Consensus 94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~ 148 (326)
.+...+++...|+|.|-......-+|+|||+ |+.+|++..+.....+.|...
T Consensus 200 ~~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 200 TGLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence 3555677889999999999999999999872 579999887777777777653
No 35
>TIGR00909 2A0306 amino acid transporter.
Probab=97.22 E-value=0.046 Score=53.06 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchh
Q 020470 94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 152 (326)
Q Consensus 94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~G 152 (326)
.+...++....|+|.|........+|+|||+ |+.+|++..+..++.++|+......
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~ 250 (429)
T TIGR00909 195 GGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVI 250 (429)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788889999999999999999999872 6789999999999999999886543
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.13 E-value=0.032 Score=54.45 Aligned_cols=55 Identities=11% Similarity=-0.075 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhc
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 150 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~ 150 (326)
+.+++.++....|+|.|.......-+|+|||+ |+.+|++..+..++..+|...-.
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 190 YVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence 34677788888999999999999999999872 57999999999888888876643
No 37
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.10 E-value=0.049 Score=53.84 Aligned_cols=51 Identities=8% Similarity=-0.026 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhh
Q 020470 95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC 148 (326)
Q Consensus 95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~ 148 (326)
....++....|+|.|-......-+|+|||+ |+.+|++..+..++.+++...
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~ 268 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCF 268 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHH
Confidence 444555567799999999999999999872 679999988887766554433
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.05 E-value=0.039 Score=54.87 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
..++..++....|+|.|-......-.|+|||+ |+.+|++..+..++.++|....+.
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a 289 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIA 289 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44666788889999999999999999999872 679999999999999999998544
No 39
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.03 E-value=0.066 Score=53.46 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhh
Q 020470 98 QALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 149 (326)
Q Consensus 98 ~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g 149 (326)
..+..+.|+|.|-......-+|+|||+ |+++|++..+..++.++|....
T Consensus 198 ~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 198 VVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence 344456899999999999999999882 6799999999988888887643
No 40
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.94 E-value=0.054 Score=53.02 Aligned_cols=250 Identities=14% Similarity=0.108 Sum_probs=130.4
Q ss_pred cccCCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH---HHHHHHHhhhhhhhhcCCCccccccccccCchhhHHH
Q 020470 18 CEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSF---AYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMW 94 (326)
Q Consensus 18 ~~~~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (326)
|..++..-.++.++++..+++ .|..++++.+.+-.+.++ +...++++.+++.....+..+.+....+.. ..+.-
T Consensus 128 c~~p~~~~~lla~~~l~~lt~-~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~--~~~~g 204 (479)
T KOG1287|consen 128 CDVPRVASKLLAAALLVLLTL-INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGS--DTDVG 204 (479)
T ss_pred CCCchHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccC--cCchH
Confidence 665555555555454455544 677778876665444433 233333344444222211111000001101 11122
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccc------c
Q 020470 95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG------F 168 (326)
Q Consensus 95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n------~ 168 (326)
++..++=.-.|||+|=..+=-+-.|+|||+ |+++++...++.+++++|+.+=+..+.+-- .+.++.+ +
T Consensus 205 ~i~lafysglfa~~GWd~lN~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~F 278 (479)
T KOG1287|consen 205 NIALAFYSGLFAFSGWDYLNYVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTF 278 (479)
T ss_pred HHHHHHHHhhhcccCchhhccchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHH
Confidence 344566667799999888888999999882 789999999999999999998665443321 1222221 1
Q ss_pred CCC-CChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCCCCCccccCCCCCCcccccchhhhHHHHHHHH
Q 020470 169 GFY-EPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVS 247 (326)
Q Consensus 169 ~~~-~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~ 247 (326)
.+. .+.+. -+.-++..++.+++.--.++.....+...-+ + .++++-..... .++ .--+ ...++-.+
T Consensus 279 a~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar----e-G~LP~~~s~i~----~~~-~TP~--~allf~~~ 345 (479)
T KOG1287|consen 279 ADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR----E-GHLPAFFSMIS----VRR-FTPR--PALLFSGL 345 (479)
T ss_pred HHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH----c-cCccHHHHhhc----CCC-CCCh--HHHHHHHH
Confidence 000 01222 1223334444455433222222222222111 1 11110000000 000 0001 12333445
Q ss_pred HHHHHHHCCChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCcc
Q 020470 248 VTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE 289 (326)
Q Consensus 248 ~~~lAi~iP~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~~ 289 (326)
..++..++.|++++++.++=.-.....+.+=+++|+|.++++
T Consensus 346 ~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 346 LSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 556667778999999999998888899999999999977654
No 41
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=96.90 E-value=0.13 Score=50.36 Aligned_cols=55 Identities=18% Similarity=0.133 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
.++..++....|+|.|-......-.|+|||+ |+.+|+...+......+|+.....
T Consensus 201 ~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~ 255 (452)
T TIGR01773 201 GAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFI 255 (452)
T ss_pred HHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888899999999999999999999872 579999887788888888875443
No 42
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.87 E-value=0.19 Score=53.89 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 96 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 96 ~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
++..++++.+||.|-.....+-.|+|||+ +..++....++.+++++|+.+.+.
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788889999999999999999882 679999999999999999998653
No 43
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.79 E-value=0.22 Score=49.53 Aligned_cols=54 Identities=19% Similarity=0.098 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhc
Q 020470 94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 150 (326)
Q Consensus 94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~ 150 (326)
++...++....|+|.|-......-+|+|||+ |+.+|++..+...+..+|....+
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence 3555667778999999999999999999882 67999999999999999987543
No 44
>PRK10836 lysine transporter; Provisional
Probab=96.63 E-value=0.36 Score=47.86 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
..+.+.....|+|.|-......-.|+|||+ |+.+|++..+...+.++|......
T Consensus 206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~ 259 (489)
T PRK10836 206 AMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILI 259 (489)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556799999999999999999872 679999999999999999977543
No 45
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.48 E-value=0.32 Score=47.36 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccc
Q 020470 95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 158 (326)
Q Consensus 95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~ 158 (326)
....+++...++|.|-......-+|+|||+ |+.+|....+...+..+|......-....++
T Consensus 202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 202 GILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 566788889999999999999999999872 5689999999999999999988776666665
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.07 E-value=1.7 Score=42.93 Aligned_cols=53 Identities=8% Similarity=-0.150 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhc
Q 020470 95 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 150 (326)
Q Consensus 95 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~ 150 (326)
....+.....|+|.|-......-+|+|||+ |+.+|++..+..+...+|..+-+
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~ 266 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMIL 266 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHH
Confidence 344456667899999999999999999882 67999999888887765555443
No 47
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=95.40 E-value=1.1 Score=43.70 Aligned_cols=180 Identities=11% Similarity=0.094 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhh-----hhhHHHHHhhhhhchhcccccccccc--
Q 020470 90 IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTM-----SIITTTIFYLFCGGFGYAAFGDNTPG-- 162 (326)
Q Consensus 90 ~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~-----s~~~~~~lY~~~g~~GY~~fG~~~~~-- 162 (326)
+..+.+++.++-+.+|||.+...+=---+|-|||+ |..+|+.+. ...-...+.....+.-+-.++++.++
T Consensus 199 P~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV 275 (462)
T COG1113 199 PNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV 275 (462)
T ss_pred CCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH
Confidence 44566888899999999999999988999999883 456665543 33333444445566666666554433
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhh-hCCCCCCCCCccccCCCCCCcccccchhhhHH
Q 020470 163 NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 241 (326)
Q Consensus 163 ~il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r 241 (326)
.++..++ -.+...+.|+......+.+.-=-.+.....+..+-.+ ..|+ .+ .|-.+..+| +.-+.+.
T Consensus 276 ~~f~~iG---i~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk-~~-~klsk~gVP--------~~ai~~s 342 (462)
T COG1113 276 TVFSLIG---IPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPK-AF-AKLSKRGVP--------VNAILLS 342 (462)
T ss_pred HHHHHcC---CcccccceeEEEeechhhcccccccccchHHHHHhhcCcccH-hH-hhccccCCC--------HHHHHHH
Confidence 1222222 1111122222222222222111111222333333211 1111 11 110011222 2335567
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHhhhhhhhH--HHHhhHHHHHHhcC
Q 020470 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL--TIYFPVEMYFKQMN 287 (326)
Q Consensus 242 ~~~v~~~~~lAi~iP~~~~v~~lvGa~~~~~l--~filP~l~yl~~~~ 287 (326)
.....++.++....| +.++.++=+.++..+ ...+=.+.|+|.+|
T Consensus 343 ~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 343 AVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777788888899999 666666555443333 23333456666554
No 48
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=94.82 E-value=0.086 Score=52.06 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccc
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 158 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~ 158 (326)
+.+++.++....++|.|-......-.|.|||+ |+.+|....+.....++|......-=...|.
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 55788899999999999999999999999882 6799999999999999998876544444443
No 49
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=93.64 E-value=3.5 Score=38.91 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=45.7
Q ss_pred HHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccccc
Q 020470 101 GDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 160 (326)
Q Consensus 101 ~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~ 160 (326)
+...++|.+.....-...++||| ++.+|+...+..++..+|...-+..-..+|.+.
T Consensus 186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 46778888877777788889976 789999999999999999988777777777544
No 50
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=92.14 E-value=12 Score=37.32 Aligned_cols=123 Identities=12% Similarity=0.104 Sum_probs=69.8
Q ss_pred cCCchhHHHHHHHHHHhhc--CCCCchhh-HHHHHHHHHHHHHHHHHHhhhhhhhhcCCCcccccccccc-CchhhHHHH
Q 020470 20 YSDTYYMLIFGAVQLILSQ--APDFHNIQ-SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVST-TTSIEKMWL 95 (326)
Q Consensus 20 ~~~~~~~ii~~~~~~pl~~--~~~l~~L~-~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 95 (326)
.+...|..++.++++.+.+ .|.+.+-- |+|.+=++..+.+.++.++..+ .+.+++. .....-+++ ......+.+
T Consensus 158 v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~-Gg~~~~~-~ig~~yw~~pg~F~~gf~g 235 (541)
T COG0833 158 VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIIC-GGGPTHG-YIGFNYWHDPGAFAGGFKG 235 (541)
T ss_pred CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCC-CcceeeecCCCCCCcchHH
Confidence 4667899998888877664 47777666 5565544433332222222111 2222111 000000000 012334567
Q ss_pred HHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhh
Q 020470 96 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF 147 (326)
Q Consensus 96 ~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~ 147 (326)
+...+-+..|+|+|.-.+----.|=+||+ |..+|+....+-=..++|+.
T Consensus 236 ~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~ 284 (541)
T COG0833 236 FCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYIL 284 (541)
T ss_pred HHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHH
Confidence 77788889999999999988888999873 55677666555555555554
No 51
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=91.72 E-value=3.9 Score=41.29 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhch
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 151 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~ 151 (326)
+.++..++.+..|+|.|--.+-..-.|-|||+ |..+++...++..++.+|....+.
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 55777888899999999999999999999883 678999999999999999987554
No 52
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=82.83 E-value=56 Score=32.87 Aligned_cols=73 Identities=11% Similarity=-0.023 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccccccccccc
Q 020470 92 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG 167 (326)
Q Consensus 92 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~~~~il~n 167 (326)
.-|.+..++-.-+..+.|--.-..+-.|-||+ + ++-+|.+..+..+..++=..+-+.-.++-+||...-+-.+
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA--s-k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~ 322 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA--S-KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSS 322 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcch--h-hhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCC
Confidence 34555556666677777777778888899976 2 5778888777777777666666655666676554433334
No 53
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=79.70 E-value=59 Score=31.18 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=28.2
Q ss_pred hhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccc
Q 020470 112 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 158 (326)
Q Consensus 112 ~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~ 158 (326)
..+...+-.|+| ++..+....+..+...+...+|...-.+.|+
T Consensus 191 ~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 191 LIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred HccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356777777754 5555555667777777777777766655554
No 54
>PRK11375 allantoin permease; Provisional
Probab=73.91 E-value=98 Score=30.74 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=14.6
Q ss_pred hHHHHHHHhhhhhhhHHHHhhH
Q 020470 258 FNQVLGVIGGVIFWPLTIYFPV 279 (326)
Q Consensus 258 ~~~v~~lvGa~~~~~l~filP~ 279 (326)
|.+++++.|++.+.....++==
T Consensus 373 f~~FL~~lg~~l~Pi~gImi~D 394 (484)
T PRK11375 373 IYLFLDIIGGMLGPVIGVMMAH 394 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 7788888888876555444433
No 55
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=66.64 E-value=1.4e+02 Score=29.46 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=32.6
Q ss_pred cchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccccc
Q 020470 110 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 160 (326)
Q Consensus 110 h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~ 160 (326)
-.-....-+-+|+|+| ++--.....+......+-...|...-.+=|++.
T Consensus 210 ~~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 210 GPYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred hhhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3445566777887633 244445566777777777778888887777766
No 56
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=65.27 E-value=12 Score=33.30 Aligned_cols=76 Identities=9% Similarity=0.182 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHH---------hhhhhhhHHHHhhHHHHHHhcCcchh-----HHHHHHHHHHHHHHHHH
Q 020470 243 VYVVSVTAIAMSFPYFNQVLGVI---------GGVIFWPLTIYFPVEMYFKQMNIEAW-----TRKWVMLRVFSYVCFIV 308 (326)
Q Consensus 243 ~~v~~~~~lAi~iP~~~~v~~lv---------Ga~~~~~l~filP~l~yl~~~~~~~~-----~~~~~~~~~i~~~G~v~ 308 (326)
...+..+++|.+++.++.++..+ ||.+|-.|+++= |+.+.|.++. ....|.-|+++++|+++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 44556677888889998888776 888888888875 5444332211 11223446777899999
Q ss_pred HHHHHHH--HHHHHHH
Q 020470 309 STFGLVG--SIQGIIS 322 (326)
Q Consensus 309 ~v~Gt~~--si~~ii~ 322 (326)
..-|++. .|++.-+
T Consensus 237 ~lr~~i~YikVrrm~~ 252 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEE 252 (262)
T ss_pred HHHHHHhHHHHhhHHH
Confidence 9888864 4444433
No 57
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=58.53 E-value=25 Score=30.44 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=45.5
Q ss_pred HHhhhhhhhHHHHhhHHHHHHhcCcch----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020470 264 VIGGVIFWPLTIYFPVEMYFKQMNIEA----------WTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 322 (326)
Q Consensus 264 lvGa~~~~~l~filP~l~yl~~~~~~~----------~~~~~~~~~~i~~~G~v~~v~Gt~~si~~ii~ 322 (326)
..|++.+.-+..++|+...+..+|+.= .....+..++...+|++++++....|..++.+
T Consensus 49 ~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 49 YFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred ecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 458888899999999999998765411 01123567788889999999999999988876
No 58
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=55.73 E-value=2e+02 Score=27.70 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=20.0
Q ss_pred HHHHHHHHCCChHHHHHHHhhhhhhhHHHHhhHHHHHH
Q 020470 247 SVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFK 284 (326)
Q Consensus 247 ~~~~lAi~iP~~~~v~~lvGa~~~~~l~filP~l~yl~ 284 (326)
.+.+++.. .++.++++ +...+.+++|..+-+.
T Consensus 315 ~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~li 346 (378)
T TIGR00796 315 FSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLI 346 (378)
T ss_pred HHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33444443 67777774 5667888888866554
No 59
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=55.39 E-value=47 Score=30.70 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccccc
Q 020470 94 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 160 (326)
Q Consensus 94 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~ 160 (326)
.+.+.+.-...+.|.+-....-+...+++| ++..|....+..+...+|...-+..-..||.+.
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 175 KPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 345555556667777777777788888976 778888888888888888777666666777543
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=52.95 E-value=71 Score=30.57 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=16.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCCchhhHHHHHHHHH
Q 020470 21 SDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVM 55 (326)
Q Consensus 21 ~~~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~ 55 (326)
+...-+++.+++.+..+..-=++...+...+=.+.
T Consensus 119 ~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i 153 (406)
T PF00474_consen 119 PYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVI 153 (406)
T ss_dssp -HHHHHHHHHHHHHHTTCTT------SHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHH
Confidence 33444555666666677777788888777654433
No 61
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=50.63 E-value=2.5e+02 Score=27.35 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=30.9
Q ss_pred CCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccc----ccccc
Q 020470 108 PYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA----FGDNT 160 (326)
Q Consensus 108 ~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~----fG~~~ 160 (326)
..-.+.+..-+.+|+| ++-.+....+..........+|..+-.. +|+..
T Consensus 222 s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 222 TWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred HHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 4455678888889965 3333445556666666666666666554 77553
No 62
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=49.02 E-value=93 Score=32.74 Aligned_cols=41 Identities=7% Similarity=0.068 Sum_probs=27.9
Q ss_pred cCCchhHHHHHHHHHHhh--cCCCCchhhHHHHHHHHHHHHHH
Q 020470 20 YSDTYYMLIFGAVQLILS--QAPDFHNIQSLSVIAAVMSFAYS 60 (326)
Q Consensus 20 ~~~~~~~ii~~~~~~pl~--~~~~l~~L~~~S~~~~v~~~~~~ 60 (326)
.+-|.|..++.+++.... =.|-.++++.+++.+++.+++.+
T Consensus 245 nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlai 287 (1075)
T KOG2082|consen 245 NNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAI 287 (1075)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 477888877666554433 34778888888888777665543
No 63
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=40.23 E-value=27 Score=22.70 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=22.8
Q ss_pred HhhhhhhhhhHHHHHhhhhhchhcccccccc
Q 020470 130 MKKASTMSIITTTIFYLFCGGFGYAAFGDNT 160 (326)
Q Consensus 130 ~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~~ 160 (326)
|..+...++.+..++..++|..-|.+||.-.
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4445566777778888888888899999654
No 64
>CHL00020 psbN photosystem II protein N
Probab=35.83 E-value=27 Score=22.32 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=20.4
Q ss_pred hhhhhhhHHHHHhhhhhchhcccccccc
Q 020470 133 ASTMSIITTTIFYLFCGGFGYAAFGDNT 160 (326)
Q Consensus 133 v~~~s~~~~~~lY~~~g~~GY~~fG~~~ 160 (326)
+...++.+..++...+|..-|.+||...
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 3445667777777778888889999654
No 65
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=33.09 E-value=4.2e+02 Score=25.86 Aligned_cols=54 Identities=19% Similarity=0.047 Sum_probs=40.0
Q ss_pred chhhhHHHHHHHHHHHHHHHCCChHHHHHHHhhhhhhhHHHHhhHHHHHHhcCc
Q 020470 235 PLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI 288 (326)
Q Consensus 235 ~~r~~~r~~~v~~~~~lAi~iP~~~~v~~lvGa~~~~~l~filP~l~yl~~~~~ 288 (326)
.+|...|....+.+.++.+.+-+...++.+.+.+.+..+-+..+++.++-.+|+
T Consensus 325 ~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 325 RRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 456777777676666665555599999999999998888888888777764443
No 66
>PRK01844 hypothetical protein; Provisional
Probab=29.95 E-value=1.5e+02 Score=21.34 Aligned_cols=25 Identities=4% Similarity=-0.130 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 020470 299 RVFSYVCFIVSTFGLVGSIQGIISA 323 (326)
Q Consensus 299 ~~i~~~G~v~~v~Gt~~si~~ii~~ 323 (326)
+++.++++++|++|.+.-.+...++
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655444444444443
No 67
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=29.10 E-value=2.3e+02 Score=26.37 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020470 298 LRVFSYVCFIVSTFGLVGSIQGIISAKL 325 (326)
Q Consensus 298 ~~~i~~~G~v~~v~Gt~~si~~ii~~~~ 325 (326)
...++.+|++++..|.+.++++.....+
T Consensus 280 ~~~l~~~g~~lg~lgs~~s~~r~Lr~~~ 307 (309)
T TIGR00439 280 LGLLLGFCIALGVVGAWLATTQHLLCFK 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3466678999999999999998876653
No 68
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=28.15 E-value=6.1e+02 Score=25.21 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCcchh-HHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccc
Q 020470 99 ALGDIAFAYPYSLIL-IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 159 (326)
Q Consensus 99 ~~~~~~faf~~h~~~-~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~ 159 (326)
..+...+.|.+++.+ +...+ .++++..+++.++........+...=..+|+.|...+.+.
T Consensus 240 ~~~~~~l~~~~~~~i~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 300 (493)
T COG0591 240 AWGTLFLGYFGQPHILPRFMA-AKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLL 300 (493)
T ss_pred HHHHHHhhhhcCchhhhhhhh-hccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444444555555555 44444 4433112246666655555555555455666666555443
No 69
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=28.11 E-value=39 Score=21.68 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=18.7
Q ss_pred hhhhhHHHHHhhhhhchhcccccccc
Q 020470 135 TMSIITTTIFYLFCGGFGYAAFGDNT 160 (326)
Q Consensus 135 ~~s~~~~~~lY~~~g~~GY~~fG~~~ 160 (326)
..++.+..++-..+|..-|.+||...
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 45666677777777777899998544
No 70
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=27.91 E-value=2.6e+02 Score=25.99 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020470 299 RVFSYVCFIVSTFGLVGSIQGIISAKL 325 (326)
Q Consensus 299 ~~i~~~G~v~~v~Gt~~si~~ii~~~~ 325 (326)
..+.+.|++++.+|.+.++++.....+
T Consensus 281 ~~l~~~~~~ig~l~s~~s~~r~L~~~~ 307 (309)
T PRK11026 281 LLLLLVCSMIGWVAAWLATVQHLRRFT 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355678899999999999998876543
No 71
>PRK11017 codB cytosine permease; Provisional
Probab=26.84 E-value=5.7e+02 Score=24.52 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=11.8
Q ss_pred CChHHHHHHHhhhhhhhHH
Q 020470 256 PYFNQVLGVIGGVIFWPLT 274 (326)
Q Consensus 256 P~~~~v~~lvGa~~~~~l~ 274 (326)
.+++++++++|...+....
T Consensus 311 ~~~~~FL~~lg~~l~P~~g 329 (404)
T PRK11017 311 NNFVGWLTLLGSAIPPVGG 329 (404)
T ss_pred HHHHHHHHHHHHHhhhhHh
Confidence 5577777777765544433
No 72
>PRK12768 CysZ-like protein; Reviewed
Probab=26.34 E-value=4.6e+02 Score=23.47 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=19.2
Q ss_pred hhhCCCCcccccHhhhhhhhhhHHHHHhhhhh
Q 020470 118 DTLKSPPPANQTMKKASTMSIITTTIFYLFCG 149 (326)
Q Consensus 118 ~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g 149 (326)
+++.|| ++++++..+...+..++...+
T Consensus 10 ~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 10 ARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 456654 688888888777777777753
No 73
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.63 E-value=1.3e+02 Score=23.96 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020470 299 RVFSYVCFIVSTFGLVGSIQGIIS 322 (326)
Q Consensus 299 ~~i~~~G~v~~v~Gt~~si~~ii~ 322 (326)
+..+++|++.+++|++.-+.-.+.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHH
Confidence 345566766666666654444443
No 74
>COG4478 Predicted membrane protein [Function unknown]
Probab=24.26 E-value=4.4e+02 Score=22.82 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=32.2
Q ss_pred hHHHHHHHhhhhhhhHHHHhhHHHH--HHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020470 258 FNQVLGVIGGVIFWPLTIYFPVEMY--FKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 321 (326)
Q Consensus 258 ~~~v~~lvGa~~~~~l~filP~l~y--l~~~~~~~~~~~~~~~~~i~~~G~v~~v~Gt~~si~~ii 321 (326)
|.||=.+.--+..+.+.+.+|.+-- .+..|++.++..+...+++.++++.+|+.+.-...+...
T Consensus 84 FadVk~Lf~lv~~v~i~i~lp~l~~fi~r~ik~~~~s~lk~sli~l~v~pliIGv~~~ligF~~fF 149 (210)
T COG4478 84 FADVKNLFHLVQIVAIFILLPFLPLFIYRFIKKRFLSYLKKSLILLLVLPLIIGVAASLIGFDIFF 149 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 4444444444444555555664322 222233333322223466777888888887554444433
No 75
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=21.06 E-value=3.5e+02 Score=19.94 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.0
Q ss_pred HHHhhhhhhhHHHHhhHHHHHHh
Q 020470 263 GVIGGVIFWPLTIYFPVEMYFKQ 285 (326)
Q Consensus 263 ~lvGa~~~~~l~filP~l~yl~~ 285 (326)
++++...+..++++.|+.--.|.
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~ka 24 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKA 24 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999888874
No 76
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.58 E-value=2.9e+02 Score=19.76 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 020470 299 RVFSYVCFIVSTFGLVGSIQGIISA 323 (326)
Q Consensus 299 ~~i~~~G~v~~v~Gt~~si~~ii~~ 323 (326)
+++++++++.+++|.+.=.+...++
T Consensus 7 il~ivl~ll~G~~~G~fiark~~~k 31 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIARKQMKK 31 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778877766666555555543
No 77
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=20.03 E-value=4.3e+02 Score=24.79 Aligned_cols=19 Identities=32% Similarity=0.724 Sum_probs=10.5
Q ss_pred HHHHHHhhhhhhhHHHHhh
Q 020470 260 QVLGVIGGVIFWPLTIYFP 278 (326)
Q Consensus 260 ~v~~lvGa~~~~~l~filP 278 (326)
.+..++||.....+.+.+-
T Consensus 41 ~v~~ligai~~~li~~~~~ 59 (356)
T COG4956 41 YVDALIGAIIFFLISFWFG 59 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555777766555544433
Done!