Query 020470
Match_columns 326
No_of_seqs 121 out of 1334
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 03:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.2 4E-05 1.4E-09 73.0 16.7 63 93-158 190-252 (445)
2 3gia_A Uncharacterized protein 97.9 0.00032 1.1E-08 66.7 16.9 63 92-157 186-248 (444)
3 4djk_A Probable glutamate/gamm 97.7 0.0015 5.2E-08 63.1 17.1 59 98-159 205-263 (511)
4 2jln_A MHP1; hydantoin, transp 76.3 18 0.00062 34.6 10.9 32 23-55 143-174 (501)
5 3dh4_A Sodium/glucose cotransp 35.7 2.9E+02 0.01 26.2 16.9 29 27-55 138-166 (530)
6 1afo_A Glycophorin A; integral 22.5 1.3E+02 0.0045 17.9 4.4 24 300-323 13-36 (40)
7 3mp7_B Preprotein translocase 12.6 1.1E+02 0.0037 20.3 1.9 31 118-154 20-50 (61)
8 2xq2_A Sodium/glucose cotransp 12.2 9.1E+02 0.031 23.0 16.1 28 27-54 167-194 (593)
9 1rh5_B Preprotein translocase 9.3 1.4E+02 0.0047 20.6 1.6 26 125-154 29-54 (74)
10 2ww9_B Protein transport prote 7.5 1.8E+02 0.0062 20.3 1.6 33 116-154 35-67 (80)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.21 E-value=4e-05 Score=72.98 Aligned_cols=63 Identities=8% Similarity=0.106 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcccccc
Q 020470 93 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 158 (326)
Q Consensus 93 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~ 158 (326)
..++..++....|+|.|.........|+||| +|+.+|+...+..++.++|......-....+.
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4466778889999999999999999999986 26799999999999999999987765555543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.93 E-value=0.00032 Score=66.69 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccc
Q 020470 92 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 157 (326)
Q Consensus 92 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG 157 (326)
.+.+.+.+++...|+|.|.........|+||| +|+.+|++..+..++.++|....+.-....+
T Consensus 186 g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 186 AVSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44567778888899999999999999999987 1569999999999999999987665444444
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.67 E-value=0.0015 Score=63.13 Aligned_cols=59 Identities=8% Similarity=-0.009 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCcchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccc
Q 020470 98 QALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 159 (326)
Q Consensus 98 ~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~ 159 (326)
.++....|+|.|.......-+|+|||+ |+.+|++..+..++.++|+...+.-....+++
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 346678899999999999999999872 67999999999999999999877666666544
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=76.32 E-value=18 Score=34.57 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHhhcCCCCchhhHHHHHHHHH
Q 020470 23 TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVM 55 (326)
Q Consensus 23 ~~~~ii~~~~~~pl~~~~~l~~L~~~S~~~~v~ 55 (326)
..+.++++++.+++.+ .-.+.++.+.-+....
T Consensus 143 ~v~~~i~~~l~~~~~~-~G~~~i~~~~~~~~p~ 174 (501)
T 2jln_A 143 PLWIVIFGAIQVVTTF-YGITFIRWMNVFASPV 174 (501)
T ss_dssp HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHH
Confidence 3456667777777775 4467777766655433
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=35.73 E-value=2.9e+02 Score=26.18 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHHH
Q 020470 27 LIFGAVQLILSQAPDFHNIQSLSVIAAVM 55 (326)
Q Consensus 27 ii~~~~~~pl~~~~~l~~L~~~S~~~~v~ 55 (326)
++.+++++.-+..-=++...|.-.+=.+.
T Consensus 138 ~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~i 166 (530)
T 3dh4_A 138 LGLALFALVYSIYGGLSAVVWTDVIQVFF 166 (530)
T ss_dssp HHHHHHHHHTTC------CCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 44445555666777777777776654433
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=22.53 E-value=1.3e+02 Score=17.92 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 020470 300 VFSYVCFIVSTFGLVGSIQGIISA 323 (326)
Q Consensus 300 ~i~~~G~v~~v~Gt~~si~~ii~~ 323 (326)
.++++|+..++.||.-.+.--+.+
T Consensus 13 ~lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887766555543
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=12.56 E-value=1.1e+02 Score=20.27 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=17.8
Q ss_pred hhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcc
Q 020470 118 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 154 (326)
Q Consensus 118 ~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~ 154 (326)
+.-++ |+.+.|.++.. ++.+-...+|+.||.
T Consensus 20 k~~~K--Pd~~Ef~~iak----~~~iG~~i~G~iGf~ 50 (61)
T 3mp7_B 20 LVTKK--PNWATYKRAAK----ITGLGIILIGLIGML 50 (61)
T ss_dssp HHSCC--CCTTHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHhcC--CCHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 33454 46688887665 333444555666664
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=12.23 E-value=9.1e+02 Score=23.00 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHH
Q 020470 27 LIFGAVQLILSQAPDFHNIQSLSVIAAV 54 (326)
Q Consensus 27 ii~~~~~~pl~~~~~l~~L~~~S~~~~v 54 (326)
++.++++...+..-=++...+.-.+=.+
T Consensus 167 ~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 167 LGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4445555666666777777766654433
No 9
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=9.27 E-value=1.4e+02 Score=20.58 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=15.9
Q ss_pred cccccHhhhhhhhhhHHHHHhhhhhchhcc
Q 020470 125 PANQTMKKASTMSIITTTIFYLFCGGFGYA 154 (326)
Q Consensus 125 p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~ 154 (326)
|+.+.|.++.. ++.+-...+|+.||.
T Consensus 29 Pdr~EF~~iak----~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 29 PTKDEYLAVAK----VTALGISLLGIIGYI 54 (74)
T ss_dssp CCHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 46677877665 333444556777774
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=7.46 E-value=1.8e+02 Score=20.30 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=19.5
Q ss_pred HHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhcc
Q 020470 116 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 154 (326)
Q Consensus 116 i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~ 154 (326)
+..--++ |+.+.|.++.. ++.+-+..+|+.||.
T Consensus 35 vlk~~~K--Pdr~Ef~~iak----~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 35 FLAKCKK--PDLKEYTKIVK----AVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHSCCC--CCHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHhcC--CCHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444454 46677877665 334445566777774
Done!