Query 020470
Match_columns 326
No_of_seqs 121 out of 1334
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 03:27:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020470.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020470hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 8.7 59 0.0043 19.6 1.1 27 125-155 18-44 (56)
2 d1y29a_ g.3.6.2 (A:) Huwentoxi 6.2 1.1E+02 0.0077 15.0 1.2 13 2-14 12-24 (28)
3 d1ciya3 f.1.3.1 (A:33-255) del 4.7 2.6E+02 0.019 21.2 3.4 28 242-269 6-33 (223)
4 d3cx5c2 f.21.1.2 (C:1-261) Mit 4.5 7E+02 0.051 19.2 6.1 53 110-169 96-155 (261)
5 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.4 2.7E+02 0.02 16.2 2.5 24 301-324 21-44 (53)
6 d2i5nh2 f.23.10.1 (H:1-36) Pho 4.1 2.3E+02 0.017 14.5 1.7 12 23-34 19-30 (36)
7 d1q90r_ f.23.12.1 (R:) ISP sub 3.0 4.5E+02 0.033 14.1 2.5 18 265-282 18-35 (39)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 2.9 3.8E+02 0.028 13.2 2.8 12 309-320 18-29 (32)
9 d1jb0l_ f.31.1.1 (L:) Photosys 2.8 8.4E+02 0.061 17.1 6.4 25 97-121 123-147 (151)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 2.6 3.6E+02 0.026 17.8 2.2 16 246-261 12-27 (158)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.68 E-value=59 Score=19.59 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=15.4
Q ss_pred cccccHhhhhhhhhhHHHHHhhhhhchhccc
Q 020470 125 PANQTMKKASTMSIITTTIFYLFCGGFGYAA 155 (326)
Q Consensus 125 p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~ 155 (326)
|+.+.|.++.. ++.+=...+|+.||..
T Consensus 18 P~~~Ef~~ia~----v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 18 PTKDEYLAVAK----VTALGISLLGIIGYII 44 (56)
T ss_dssp CCHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 46677877654 2333344556666643
No 2
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=6.18 E-value=1.1e+02 Score=14.97 Aligned_cols=13 Identities=38% Similarity=0.411 Sum_probs=8.8
Q ss_pred cccccccccccCC
Q 020470 2 AIQKSNCYHREGH 14 (326)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (326)
|.||+-|-.-+.|
T Consensus 12 atqkipccgvcsh 24 (28)
T d1y29a_ 12 ATQKIPCCGVCSH 24 (28)
T ss_dssp TCCSCCBSSCBSS
T ss_pred ccccccceeeecc
Confidence 5677777776644
No 3
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=4.67 E-value=2.6e+02 Score=21.17 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHhhhh
Q 020470 242 TVYVVSVTAIAMSFPYFNQVLGVIGGVI 269 (326)
Q Consensus 242 ~~~v~~~~~lAi~iP~~~~v~~lvGa~~ 269 (326)
+.+-++..+++.++|..+.+.+++|-+-
T Consensus 6 i~~~~~~~ll~~~iP~~g~~~~li~~lw 33 (223)
T d1ciya3 6 ISLSLTQFLLSEFVPGAGFVLGLVDIIW 33 (223)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHHHHTT
T ss_pred hHHHHHHHHhhhcCCchHHHHHHHHHHc
Confidence 3445677788888999998888765543
No 4
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.52 E-value=7e+02 Score=19.18 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=29.2
Q ss_pred cchhHHHHhhhCCCCcccccHhhhhhhhhhHHHHHhhhhhchhccccccc-------cccccccccC
Q 020470 110 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-------TPGNLLTGFG 169 (326)
Q Consensus 110 h~~~~~i~~~m~~p~p~~~~~~~v~~~s~~~~~~lY~~~g~~GY~~fG~~-------~~~~il~n~~ 169 (326)
|..--=.+++-|+| +.+..... .....+-+..|+.||..=.|+ +-.|++..+|
T Consensus 96 H~~r~~~~gsy~~p----re~~W~~G---v~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~iP 155 (261)
T d3cx5c2 96 HMAKGLYYGSYRSP----RVTLWNVG---VIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (261)
T ss_dssp HHHHHHHHTTTSTT----CHHHHHHH---HHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHHhccccCc----cchhHHhh---HHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhcC
Confidence 55555566677765 44433333 344444555677788654443 2346666666
No 5
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.43 E-value=2.7e+02 Score=16.18 Aligned_cols=24 Identities=8% Similarity=-0.289 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 020470 301 FSYVCFIVSTFGLVGSIQGIISAK 324 (326)
Q Consensus 301 i~~~G~v~~v~Gt~~si~~ii~~~ 324 (326)
...+|...++..+|..-.++|.+|
T Consensus 21 ~~~~G~a~gl~lvy~TDWklil~y 44 (53)
T d2fyuk1 21 ASLWGAVGAVGLVWATDWRLILDW 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHTS
T ss_pred hhhhhhhhheeeeeeehHHHHHhh
Confidence 346899999999999988888775
No 6
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=4.05 E-value=2.3e+02 Score=14.47 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=8.3
Q ss_pred chhHHHHHHHHH
Q 020470 23 TYYMLIFGAVQL 34 (326)
Q Consensus 23 ~~~~ii~~~~~~ 34 (326)
.+|..+++++++
T Consensus 19 aqwlviwtvvll 30 (36)
T d2i5nh2 19 AQWLVIWTVVLL 30 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 357778777665
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.96 E-value=4.5e+02 Score=14.13 Aligned_cols=18 Identities=17% Similarity=0.133 Sum_probs=9.9
Q ss_pred HhhhhhhhHHHHhhHHHH
Q 020470 265 IGGVIFWPLTIYFPVEMY 282 (326)
Q Consensus 265 vGa~~~~~l~filP~l~y 282 (326)
+|+.+........|-.-|
T Consensus 18 ~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeEE
Confidence 456665555555555443
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.93 E-value=3.8e+02 Score=13.20 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q 020470 309 STFGLVGSIQGI 320 (326)
Q Consensus 309 ~v~Gt~~si~~i 320 (326)
...|.+.+++++
T Consensus 18 iavgiifaiksi 29 (32)
T d2e74e1 18 IAVGIIFAIKSI 29 (32)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHhhheeeEEEE
Confidence 345666666654
No 9
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=2.85 E-value=8.4e+02 Score=17.08 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCcchhHHHHhhhC
Q 020470 97 AQALGDIAFAYPYSLILIEIQDTLK 121 (326)
Q Consensus 97 ~~~~~~~~faf~~h~~~~~i~~~m~ 121 (326)
+..+|-..|||..-.+..-++.-|+
T Consensus 123 ~Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 123 VGAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hccccHHHHHHHHHcchHHHHHHHH
Confidence 3588889999988888777776665
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.61 E-value=3.6e+02 Score=17.81 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=8.4
Q ss_pred HHHHHHHHHCCChHHH
Q 020470 246 VSVTAIAMSFPYFNQV 261 (326)
Q Consensus 246 ~~~~~lAi~iP~~~~v 261 (326)
++..+.|+.+|.+...
T Consensus 12 IIgILaaia~P~~~~~ 27 (158)
T d2pila_ 12 IVGILAAVALPAYQDY 27 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445666665543
Done!