BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020472
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q43082|HEM3_PEA Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC
PE=1 SV=1
Length = 369
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/233 (84%), Positives = 214/233 (91%), Gaps = 5/233 (2%)
Query: 55 VRASAAVE-----TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKT 109
+RAS AVE K A+IRIGTRGSPLALAQAHETR+KLMA H ELA+EGAIQIVIIKT
Sbjct: 44 IRASLAVEQQTQQNKTALIRIGTRGSPLALAQAHETRDKLMASHTELAEEGAIQIVIIKT 103
Query: 110 TGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQRED 169
TGDKILSQPLADIGGKGLFTKEIDEALIN IDIAVHSMKDVPTYLPE+TILPCNL RED
Sbjct: 104 TGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEETILPCNLPRED 163
Query: 170 VRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNER 229
VRDAFISLSAASLA+LPAGS++GTASLRRKSQILHRYPSL V +NFRGNVQTRLRKL+E
Sbjct: 164 VRDAFISLSAASLADLPAGSVIGTASLRRKSQILHRYPSLTVQDNFRGNVQTRLRKLSEG 223
Query: 230 VVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPF 282
VV+ATLLALAGLKRL+MTENVT+ LS+DDMLPAVAQGAIGIACRSND+KM +
Sbjct: 224 VVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIGIACRSNDDKMAEY 276
>sp|Q43316|HEM3_ARATH Porphobilinogen deaminase, chloroplastic OS=Arabidopsis thaliana
GN=HEMC PE=1 SV=1
Length = 382
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/283 (72%), Positives = 232/283 (81%), Gaps = 3/283 (1%)
Query: 3 SLSLAASSLCTSRGGPMERHCYPGSVSLVGFSSPRLKTPSFPKSLKKRSF-GLVRASAAV 61
SLS A + T + C GSVS +GFS P++ +P+ K +K+S G V+A AV
Sbjct: 7 SLSQAHKVVLTRQPSSRVNTCSLGSVSAIGFSLPQISSPALGKCRRKQSSSGFVKACVAV 66
Query: 62 E--TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPL 119
E T+ AIIRIGTRGSPLALAQA+ETR KL HPEL ++GAI I IIKTTGDKILSQPL
Sbjct: 67 EQKTRTAIIRIGTRGSPLALAQAYETREKLKKKHPELVEDGAIHIEIIKTTGDKILSQPL 126
Query: 120 ADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA 179
ADIGGKGLFTKEIDEALIN IDIAVHSMKDVPTYLPEKTILPCNL REDVRDAFI L+A
Sbjct: 127 ADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFICLTA 186
Query: 180 ASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALA 239
A+LAELPAGS+VGTASLRRKSQILH+YP+L V ENFRGNVQTRL KL VQATLLALA
Sbjct: 187 ATLAELPAGSVVGTASLRRKSQILHKYPALHVEENFRGNVQTRLSKLQGGKVQATLLALA 246
Query: 240 GLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPF 282
GLKRLSMTENV +ILS+D+MLPAVAQGAIGIACR++D+KM +
Sbjct: 247 GLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMATY 289
>sp|Q6H6D2|HEM3_ORYSJ Porphobilinogen deaminase, chloroplastic OS=Oryza sativa subsp.
japonica GN=HEMC PE=2 SV=1
Length = 358
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 199/219 (90%), Gaps = 1/219 (0%)
Query: 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIG 123
KV++IRIGTRGSPLALAQAHETR+KL A H ELA+EGA++IVIIKTTGD IL +PLADIG
Sbjct: 46 KVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIG 105
Query: 124 GKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLA 183
GKGLFTKEID+AL+ +IDIAVHSMKDVPTYLPE TILPCNL REDVRDAFI L+A+SLA
Sbjct: 106 GKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLA 165
Query: 184 ELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKR 243
ELPAGS+VG+ASLRR+SQIL++YPSLKV+ NFRGNVQTRLRKL E V ATLLALAGLKR
Sbjct: 166 ELPAGSVVGSASLRRQSQILYKYPSLKVV-NFRGNVQTRLRKLKEGDVHATLLALAGLKR 224
Query: 244 LSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPF 282
L+M E T++LSVD+MLPAVAQGAIGIACRS+D+ M+ +
Sbjct: 225 LNMAETATSVLSVDEMLPAVAQGAIGIACRSSDDTMMNY 263
>sp|Q3SVF3|HEM3_NITWN Porphobilinogen deaminase OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=hemC PE=3 SV=1
Length = 316
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/213 (58%), Positives = 153/213 (71%), Gaps = 3/213 (1%)
Query: 70 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFT 129
IGTRGSPLALAQAHE R++L H ++A E I I I+T+GD I +PL D+GGKGLFT
Sbjct: 13 IGTRGSPLALAQAHEVRDRLARAH-QVAPE-RIAIKTIRTSGDAIQDRPLFDVGGKGLFT 70
Query: 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGS 189
KEI+EAL+ ID AVHS KDVPT+LP+ T LP L REDVRD FIS A SL +LPAG+
Sbjct: 71 KEIEEALLAGTIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDVFISPHAGSLNDLPAGA 130
Query: 190 IVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTEN 249
VGTASLRR++ +L P LKV + RGNV+TRLRK++ ATLLALAGL RL + +
Sbjct: 131 TVGTASLRRQAMVLKLRPDLKV-NSLRGNVETRLRKISVGEADATLLALAGLNRLGLQDK 189
Query: 250 VTNILSVDDMLPAVAQGAIGIACRSNDEKMVPF 282
T IL D+ LPAV QGAI I R +D+++ F
Sbjct: 190 ATRILETDEFLPAVGQGAIAIESRRDDDRINAF 222
>sp|Q1QQP5|HEM3_NITHX Porphobilinogen deaminase OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=hemC PE=3 SV=1
Length = 316
Score = 234 bits (597), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 128/213 (60%), Positives = 153/213 (71%), Gaps = 3/213 (1%)
Query: 70 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFT 129
IGTRGS LALAQA+E R++L H ++A E I I I+T+GD I +PL D+GGKGLFT
Sbjct: 13 IGTRGSALALAQANEVRDRLARAH-QVAPE-RIVIKTIRTSGDAIQDRPLFDVGGKGLFT 70
Query: 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGS 189
KEI+EAL+ ID AVHS KDVPT+LP+ T LP L REDVRDAFIS AASL +LPAGS
Sbjct: 71 KEIEEALLAGSIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDAFISPRAASLNDLPAGS 130
Query: 190 IVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTEN 249
IVGTASLRR++ +L P LKV RGNV+TRLRKL ATLLALAGL RL + +
Sbjct: 131 IVGTASLRRQAMVLRLRPDLKV-SVIRGNVETRLRKLVAGEADATLLALAGLNRLGLQDR 189
Query: 250 VTNILSVDDMLPAVAQGAIGIACRSNDEKMVPF 282
T IL D+ LPAV QGAI I R +D+++ F
Sbjct: 190 ATRILETDEFLPAVGQGAIAIESRRDDDRINAF 222
>sp|A1B853|HEM3_PARDP Porphobilinogen deaminase OS=Paracoccus denitrificans (strain Pd
1222) GN=hemC PE=3 SV=1
Length = 313
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/211 (58%), Positives = 162/211 (76%), Gaps = 3/211 (1%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
IRIGTRGS LALAQAHETR++LMA H A A +IV+IKTTGD++L +PL +IGGKGL
Sbjct: 11 IRIGTRGSALALAQAHETRDRLMAAHGLAAD--AFRIVVIKTTGDRVLDRPLKEIGGKGL 68
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
FT+EI++AL+ +IDIAVHSMKD+PT PE ++ C L REDVRDAF+S A+++ELP
Sbjct: 69 FTREIEDALLAHEIDIAVHSMKDMPTIQPEGLVIDCYLPREDVRDAFVSAQFAAISELPQ 128
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G++VG++SLRR++Q+ R P LK++E FRGNVQTRL+KL + V AT LA+AGL RL M
Sbjct: 129 GAVVGSSSLRRRAQLAARRPDLKLVE-FRGNVQTRLKKLEDGVAVATFLAMAGLTRLGML 187
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278
+ D+MLPAVAQG IG+ R++D +
Sbjct: 188 HVARGAVEPDEMLPAVAQGCIGVERRADDAR 218
>sp|Q3A009|HEM3_PELCD Porphobilinogen deaminase OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=hemC PE=3 SV=1
Length = 315
Score = 221 bits (562), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 146/211 (69%), Gaps = 5/211 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
+RIGTR S LAL QA + +L LHP L+ + +V I T GDKIL PLA +GGKGL
Sbjct: 6 LRIGTRASRLALWQAEWVQQQLETLHPGLS----VVLVPITTKGDKILDVPLAKVGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KEI+EAL + ID+AVHSMKDVP+ LP ILPC RED RDA ++ S A+LP
Sbjct: 62 FVKEIEEALYDGSIDLAVHSMKDVPSVLPPGLILPCIPPREDPRDALVTPDGRSFAQLPQ 121
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G+ +GT++LRR++Q+LHR P L ++ + RGNV+TRLRK+ E + +LA AGLKRL +
Sbjct: 122 GARIGTSALRRQAQLLHRRPDLDIV-SLRGNVETRLRKMEEEDMDGIVLAAAGLKRLELA 180
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278
E + LSVD LPA+ QGA+G+ CR D++
Sbjct: 181 ERIAEYLSVDVSLPAIGQGALGLECREGDDR 211
>sp|Q98EI7|HEM3_RHILO Porphobilinogen deaminase OS=Rhizobium loti (strain MAFF303099)
GN=hemC PE=3 SV=1
Length = 308
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 153/216 (70%), Gaps = 6/216 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
++IGTRGSPLALAQAHET+ +LMA H A+ A ++V+I T+GD+I +PL++ GGKGL
Sbjct: 5 LKIGTRGSPLALAQAHETQARLMAAHGLPAE--AFEVVVISTSGDRIQDRPLSEAGGKGL 62
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
FTKEI+EAL+ IDIAVHS KD+PT LP+ L L RED RDAF+ +A ++A+L
Sbjct: 63 FTKEIEEALLAGAIDIAVHSSKDMPTQLPDGLELSAFLPREDARDAFVGKAAKTIADLLR 122
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G+ VG++SLRR++ I P L V+ FRGNVQTRLRKL+E V T+LA AGLKRL +
Sbjct: 123 GAKVGSSSLRRQALIRRMRPDLDVV-MFRGNVQTRLRKLDEGVAAGTILAYAGLKRLGLE 181
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSND---EKMV 280
T+++ +D PA QGAIGI R D EKM+
Sbjct: 182 HVATDLMPLDIFPPAPGQGAIGIETRIGDRAVEKML 217
>sp|Q747I1|HEM3_GEOSL Porphobilinogen deaminase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=hemC PE=3 SV=1
Length = 318
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 151/221 (68%), Gaps = 9/221 (4%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
+RIGTR S LAL QA+ +++L +P + +++V IKT GDKIL PLA +GGKGL
Sbjct: 6 LRIGTRASQLALWQANWVKSELEKRYPGME----VELVKIKTIGDKILDVPLAQVGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KEI+EA++ +IDIAVHSMKDVPT PE L C +RED RDAFIS + + A LP
Sbjct: 62 FVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLVCITEREDPRDAFIS-NGVTFANLPQ 120
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G+ +GT++LRR++Q+L P L+ M RGNV+TR+RKL E + A +LA AGLKRL T
Sbjct: 121 GAKIGTSALRRQAQLLKVRPDLE-MVIIRGNVETRIRKLTEDKLDAVILAAAGLKRLGFT 179
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDE---KMVPFTTH 285
+ VT L VD LPA+ QGA+G+ CR +D+ + + F H
Sbjct: 180 DVVTEYLPVDLSLPAIGQGALGLECRLDDQAVRETIDFFNH 220
>sp|B5ERN6|HEM3_ACIF5 Porphobilinogen deaminase OS=Acidithiobacillus ferrooxidans (strain
ATCC 53993) GN=hemC PE=3 SV=1
Length = 306
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/211 (50%), Positives = 147/211 (69%), Gaps = 5/211 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
+RIGTR SPLA+ QA R L+ LHP +A ++I+ + T+GD +L PL +GGKGL
Sbjct: 5 LRIGTRASPLAVWQAEHVRAALLRLHPGMA----VEIITMTTSGDVLLDAPLHALGGKGL 60
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KEI++AL ++D+AVHSMKDVP P+ + + REDVRDAF+S + LP
Sbjct: 61 FVKEIEDALQQRRVDVAVHSMKDVPALQPDGLEIVAIMAREDVRDAFVSNTFLHPDALPE 120
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G+ VG++SLRR++Q+L RYP L+V E+ RGNV TRLR+L+E A +LA AGLKRL +
Sbjct: 121 GARVGSSSLRRRAQLLERYPHLRV-EDLRGNVATRLRRLDEGHYDAIILAAAGLKRLGLP 179
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278
+ +T++L +D LPAV QGAIGI RS+D +
Sbjct: 180 DRITHLLDIDRSLPAVGQGAIGIEARSDDRR 210
>sp|B7JBH8|HEM3_ACIF2 Porphobilinogen deaminase OS=Acidithiobacillus ferrooxidans (strain
ATCC 23270 / DSM 14882 / NCIB 8455) GN=hemC PE=3 SV=1
Length = 306
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/211 (50%), Positives = 147/211 (69%), Gaps = 5/211 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
+RIGTR SPLA+ QA R L+ LHP +A ++I+ + T+GD +L PL +GGKGL
Sbjct: 5 LRIGTRASPLAVWQAEHVRAALLRLHPGMA----VEIITMTTSGDVLLDAPLHALGGKGL 60
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KEI++AL ++D+AVHSMKDVP P+ + + REDVRDAF+S + LP
Sbjct: 61 FVKEIEDALQQRRVDVAVHSMKDVPALQPDGLEIVAIMAREDVRDAFVSNTFLHPDALPE 120
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G+ VG++SLRR++Q+L RYP L+V E+ RGNV TRLR+L+E A +LA AGLKRL +
Sbjct: 121 GARVGSSSLRRRAQLLERYPHLRV-EDLRGNVATRLRRLDEGHYDAIILAAAGLKRLGLP 179
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278
+ +T++L +D LPAV QGAIGI RS+D +
Sbjct: 180 DRITHLLDIDRSLPAVGQGAIGIEARSDDRR 210
>sp|Q8UC46|HEM3_AGRT5 Porphobilinogen deaminase OS=Agrobacterium tumefaciens (strain C58
/ ATCC 33970) GN=hemC PE=3 SV=1
Length = 309
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/212 (54%), Positives = 146/212 (68%), Gaps = 3/212 (1%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
RIGTRGSPLALAQA+ETR++LMA H L +E +IV++ T GD+I + L++IGGKGL
Sbjct: 6 FRIGTRGSPLALAQAYETRSRLMAAH-GLPEE-MFEIVVLSTKGDRITDRALSEIGGKGL 63
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
FT+E++ L++ ++DIAVHS KD+PT LPE L L RED+RDAFI +A L ELP
Sbjct: 64 FTEELENQLLSGELDIAVHSSKDMPTVLPEGLHLSAFLPREDMRDAFIGRTAPKLLELPQ 123
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G++VG+ASLRR++ I P L V+ FRG V TRLRKL E ATLLA AGLKRL
Sbjct: 124 GAVVGSASLRRQALIRRLRPDLNVI-VFRGLVDTRLRKLEEGQADATLLAFAGLKRLGKD 182
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 279
T IL + PA AQGAIG+ R D +M
Sbjct: 183 NVPTEILDPKEFPPAPAQGAIGVESRIGDARM 214
>sp|A1AUE7|HEM3_PELPD Porphobilinogen deaminase OS=Pelobacter propionicus (strain DSM
2379) GN=hemC PE=3 SV=1
Length = 310
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/225 (49%), Positives = 150/225 (66%), Gaps = 9/225 (4%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
+RIGTR S LAL QA+ +++L +P + + + IKT GD+IL PLA +GGKGL
Sbjct: 6 LRIGTRASQLALWQANWVKSELEKRYPAME----VTLTKIKTMGDRILDVPLAQVGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KEI+EA++ +IDIAVHSMKDVPT PE L C +RED RDA +S AA + LP
Sbjct: 62 FVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDAVVS-RAARFSHLPP 120
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G+ VGT++LRR++Q+LH P L+ M RGNV+TR+RKL+E + A +LA AGLKRL +T
Sbjct: 121 GARVGTSALRRQAQLLHARPDLE-MVTIRGNVETRIRKLDEENLDAVILAAAGLKRLGLT 179
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSND---EKMVPFTTHSQAS 289
+ V L V+ +PA+ QGA+GI CR +D + + F H S
Sbjct: 180 QRVAEYLDVEFSIPAIGQGALGIECRLSDPVVTEAIAFFNHPDTS 224
>sp|Q92LH7|HEM3_RHIME Porphobilinogen deaminase OS=Rhizobium meliloti (strain 1021)
GN=hemC PE=3 SV=1
Length = 309
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 145/215 (67%), Gaps = 9/215 (4%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALH---PELAQEGAIQIVIIKTTGDKILSQPLADIGG 124
RIGTRGSPLA+AQ HETR++L A H PE+ +IVI+ T GD+I + LA+IGG
Sbjct: 6 FRIGTRGSPLAMAQTHETRDRLAAAHGLPPEM-----FEIVILSTKGDRITDRSLAEIGG 60
Query: 125 KGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAE 184
KGLFT+E+++ L++ +D AVHS KD+PT LPE L L RED+RDAF+ SA L +
Sbjct: 61 KGLFTEELEQQLLSGDLDFAVHSSKDMPTKLPEGLFLSAFLPREDIRDAFVGRSAKRLVD 120
Query: 185 LPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRL 244
LP G+ VG++SLRR++ I P + V+ +RG V+TRLRKL E V TLLA AGL+RL
Sbjct: 121 LPQGATVGSSSLRRQALIRRLRPDIDVI-TYRGQVETRLRKLAEGQVDGTLLAYAGLRRL 179
Query: 245 SMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 279
M T +L ++ PA AQGAI + R D+++
Sbjct: 180 GMEHVPTELLDPEEFPPAPAQGAICVEARIGDDRI 214
>sp|Q39QM7|HEM3_GEOMG Porphobilinogen deaminase OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=hemC PE=3 SV=1
Length = 318
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 147/221 (66%), Gaps = 9/221 (4%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
+RIGTR S LAL QA+ + +L +P +A +++V IKT GDKIL PLA +GGKGL
Sbjct: 6 LRIGTRASQLALWQANWVKGELEKRYPGMA----VELVKIKTMGDKILDVPLAQVGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KEI+EA++ +IDIAVHSMKDVPT PE L C +RED RDA IS A+LP
Sbjct: 62 FVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDAVIS-RGVKFADLPQ 120
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G+ +GT++LRR++QIL P L+ M RGNV+TR+RKL + + A +LA AGL RL
Sbjct: 121 GARIGTSALRRQAQILKVRPDLQ-MVVIRGNVETRIRKLTDENLDAVILAAAGLNRLGFA 179
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEKM---VPFTTH 285
+ V+ L V+ LPA+ QGA+GI CR +DE + + F H
Sbjct: 180 DQVSEYLPVELSLPAIGQGALGIECRLDDETIKDTIAFFNH 220
>sp|A9R8K0|HEM3_YERPG Porphobilinogen deaminase OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=hemC PE=3 SV=1
Length = 313
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 143/211 (67%), Gaps = 5/211 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH ++ L A HP L I++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL++ + DIAVHSMKDVP PE L +RED RDAF+S A L +LP
Sbjct: 61 LFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGS+VGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ QA +LA+AGLKRL +
Sbjct: 121 AGSVVGTSSLRRQCQLRERRPDL-IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDE 277
+ +S ++ LPAV QGA+GI CR +D+
Sbjct: 180 ENRIRYAMSAEESLPAVGQGAVGIECRLDDD 210
>sp|B7LU53|HEM3_ESCF3 Porphobilinogen deaminase OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=hemC PE=3 SV=1
Length = 313
Score = 204 bits (519), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 110/212 (51%), Positives = 143/212 (67%), Gaps = 5/212 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++ LMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDALMAKHPGLT----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ ++ DIAVHSMKDVP P+ L +RED RDAF+S ASL ELP
Sbjct: 61 LFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNKYASLDELP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278
+ + L + LPAV QGA+GI CR +D +
Sbjct: 180 ESRIRDALPPEVSLPAVGQGAVGIECRLDDTR 211
>sp|Q0VM28|HEM3_ALCBS Porphobilinogen deaminase OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=hemC PE=3 SV=1
Length = 310
Score = 204 bits (519), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 150/229 (65%), Gaps = 7/229 (3%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
I+RI TR SPLA+ QA + +L +LH L +++V IKT GDKIL PLA IGGKG
Sbjct: 5 ILRIATRSSPLAIWQAEYVQQRLESLHEGLR----VELVRIKTQGDKILDTPLAKIGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++EA+++ + DIAVHSMKDVP LP LP +RED RDAF+S + L+ LP
Sbjct: 61 LFVKELEEAMMDGRADIAVHSMKDVPMELPPGFALPVICEREDPRDAFVSNTFDGLSSLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
G+ VGT+SLRR++Q+ P L V+ + RGNVQTRL KL+ A +LA AGLKRL M
Sbjct: 121 HGACVGTSSLRRQAQVKANRPDL-VVNSLRGNVQTRLGKLDAGNFDAIILAAAGLKRLEM 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFN 295
+ + + ++ LPAV QGA+GI CR DE + S S ++T++
Sbjct: 180 HDRIRYEMPPEESLPAVGQGAVGIECREGDESTIELL--SPLSDVDTWD 226
>sp|A4TRA8|HEM3_YERPP Porphobilinogen deaminase OS=Yersinia pestis (strain Pestoides F)
GN=hemC PE=3 SV=1
Length = 313
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 143/211 (67%), Gaps = 5/211 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH ++ L A HP L I++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL++ + DIAVHSMKDVP PE L +RED RDAF+S A L +LP
Sbjct: 61 LFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGS+VGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ QA +LA+AGLKRL +
Sbjct: 121 AGSVVGTSSLRRQCQLRERRPDL-IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDE 277
+ +S ++ LPAV QGA+GI CR +D+
Sbjct: 180 ENRIRYAMSAEESLPAVGQGAVGIECRLDDD 210
>sp|Q1CNI3|HEM3_YERPN Porphobilinogen deaminase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=hemC PE=3 SV=1
Length = 313
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 143/211 (67%), Gaps = 5/211 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH ++ L A HP L I++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL++ + DIAVHSMKDVP PE L +RED RDAF+S A L +LP
Sbjct: 61 LFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGS+VGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ QA +LA+AGLKRL +
Sbjct: 121 AGSVVGTSSLRRQCQLRERRPDL-IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDE 277
+ +S ++ LPAV QGA+GI CR +D+
Sbjct: 180 ENRIRYAMSAEESLPAVGQGAVGIECRLDDD 210
>sp|P46355|HEM3_YERPE Porphobilinogen deaminase OS=Yersinia pestis GN=hemC PE=3 SV=2
Length = 313
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 143/211 (67%), Gaps = 5/211 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH ++ L A HP L I++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL++ + DIAVHSMKDVP PE L +RED RDAF+S A L +LP
Sbjct: 61 LFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGS+VGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ QA +LA+AGLKRL +
Sbjct: 121 AGSVVGTSSLRRQCQLRERRPDL-IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDE 277
+ +S ++ LPAV QGA+GI CR +D+
Sbjct: 180 ENRIRYAMSAEESLPAVGQGAVGIECRLDDD 210
>sp|Q1CBN1|HEM3_YERPA Porphobilinogen deaminase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=hemC PE=3 SV=1
Length = 313
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 143/211 (67%), Gaps = 5/211 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH ++ L A HP L I++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL++ + DIAVHSMKDVP PE L +RED RDAF+S A L +LP
Sbjct: 61 LFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGS+VGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ QA +LA+AGLKRL +
Sbjct: 121 AGSVVGTSSLRRQCQLRERRPDL-IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDE 277
+ +S ++ LPAV QGA+GI CR +D+
Sbjct: 180 ENRIRYAMSAEESLPAVGQGAVGIECRLDDD 210
>sp|A7FD67|HEM3_YERP3 Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=hemC PE=3 SV=1
Length = 313
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 143/211 (67%), Gaps = 5/211 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH ++ L A HP L I++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL++ + DIAVHSMKDVP PE L +RED RDAF+S A L +LP
Sbjct: 61 LFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGS+VGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ QA +LA+AGLKRL +
Sbjct: 121 AGSVVGTSSLRRQCQLRERRPDL-IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDE 277
+ +S ++ LPAV QGA+GI CR +D+
Sbjct: 180 ENRIRYAMSAEESLPAVGQGAVGIECRLDDD 210
>sp|Q66G00|HEM3_YERPS Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=hemC PE=3 SV=1
Length = 313
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 143/211 (67%), Gaps = 5/211 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH ++ L A HP L I++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL++ + DIAVHSMKDVP PE L +RED RDAF+S A L +LP
Sbjct: 61 LFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVAICEREDPRDAFVSSHYAHLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGS+VGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ QA +LA+AGLKRL +
Sbjct: 121 AGSVVGTSSLRRQCQLRERRPDL-IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDE 277
+ +S ++ LPAV QGA+GI CR +D+
Sbjct: 180 ETRIRYAMSAEESLPAVGQGAVGIECRLDDD 210
>sp|B2K065|HEM3_YERPB Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype
IB (strain PB1/+) GN=hemC PE=3 SV=1
Length = 313
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 143/211 (67%), Gaps = 5/211 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH ++ L A HP L I++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL++ + DIAVHSMKDVP PE L +RED RDAF+S A L +LP
Sbjct: 61 LFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVAICEREDPRDAFVSSHYAHLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGS+VGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ QA +LA+AGLKRL +
Sbjct: 121 AGSVVGTSSLRRQCQLRERRPDL-IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDE 277
+ +S ++ LPAV QGA+GI CR +D+
Sbjct: 180 ETRIRYAMSAEESLPAVGQGAVGIECRLDDD 210
>sp|Q1I316|HEM3_PSEE4 Porphobilinogen deaminase OS=Pseudomonas entomophila (strain L48)
GN=hemC PE=3 SV=1
Length = 313
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/212 (51%), Positives = 142/212 (66%), Gaps = 5/212 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
IRI TR S LAL QA + +L HP L + +V + + GDK+L PLA IGGKGL
Sbjct: 6 IRIATRKSALALWQAEYVKARLEQAHPGLQ----VSLVPMVSRGDKLLDAPLAKIGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KE++ AL++++ DIAVHSMKDVP PE L C +RED RDAF+S + SL LPA
Sbjct: 62 FVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNTFKSLEALPA 121
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
GS+VGT+SLRR++Q+L R P L++ RGNV TRL KL+ A +LA AGL RL
Sbjct: 122 GSVVGTSSLRRQAQLLARRPDLEI-RFLRGNVNTRLAKLDAGEYDAIILAAAGLVRLGFE 180
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 279
+ +T+ +SVDD LPA QGA+GI CRS D ++
Sbjct: 181 DRITSTISVDDSLPAGGQGAVGIECRSADSEI 212
>sp|Q3K4T0|HEM3_PSEPF Porphobilinogen deaminase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=hemC PE=3 SV=1
Length = 313
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/212 (52%), Positives = 143/212 (67%), Gaps = 5/212 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
IRI TR S LAL QA + +L A HP L + +V + + GDK+L PL+ IGGKGL
Sbjct: 6 IRIATRKSALALWQAEYVKARLEAAHPGLL----VTLVPMVSRGDKLLDSPLSKIGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KE++ AL+ ++ DIAVHSMKDVP PE L C +RED RDAF+S + +SL LPA
Sbjct: 62 FVKELETALLENEADIAVHSMKDVPMDFPEGLGLFCICEREDPRDAFVSNTYSSLDALPA 121
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
GSIVGT+SLRR++Q+L R P L++ RGNV TRL KL+ A +LA AGL RL
Sbjct: 122 GSIVGTSSLRRQAQLLTRRPDLEI-RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFE 180
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 279
+ +T+ +SVDD LPA QGA+GI CRS D ++
Sbjct: 181 DRITSAISVDDSLPAGGQGAVGIECRSADTEI 212
>sp|Q6FFA9|HEM3_ACIAD Porphobilinogen deaminase OS=Acinetobacter sp. (strain ADP1)
GN=hemC PE=3 SV=1
Length = 311
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 147/215 (68%), Gaps = 5/215 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
++I TR SPLAL QA R++L AL+PEL +++V T GDKIL PLA IGGKGL
Sbjct: 9 LKIATRQSPLALWQAEHIRDRLQALYPELK----VELVKFVTQGDKILDTPLAKIGGKGL 64
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KE++ AL++ + D+AVHSMKDVP +LPE L +RED DAF+S S +LP
Sbjct: 65 FVKELEAALLDGRADLAVHSMKDVPMHLPEGLSLAVICEREDPLDAFVSNHVMSFDQLPL 124
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G+ VGT+SLRRK QIL + P L+++ + RGNV TRL KL++ A +LA AGLKRL +
Sbjct: 125 GARVGTSSLRRKCQILKQRPDLEII-DLRGNVGTRLAKLDDGQYDAIVLASAGLKRLGLI 183
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPF 282
+ + ++ + LPAV QGA+G+ CR+ND+K++
Sbjct: 184 SRIRHSINAEISLPAVGQGALGLECRANDKKILDL 218
>sp|B3QWI1|HEM3_CHLT3 Porphobilinogen deaminase OS=Chloroherpeton thalassium (strain ATCC
35110 / GB-78) GN=hemC PE=3 SV=1
Length = 314
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 157/250 (62%), Gaps = 13/250 (5%)
Query: 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIG 123
K A+I IGTR SPLAL QA + +L +P L I + IKTTGDKIL PLA IG
Sbjct: 2 KKALI-IGTRSSPLALWQAEFIKAELSKHYPSLD----ISLRHIKTTGDKILDAPLAKIG 56
Query: 124 GKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLA 183
KGLFT+EI+ ++ ++ID+AVHS+KD+PT PE ++ +RED RD IS +L
Sbjct: 57 DKGLFTREIEHVMLRNEIDLAVHSLKDLPTETPEGLVITAITEREDNRDVLISKGKYTLK 116
Query: 184 ELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKR 243
LP G+IV T+SLRR+SQ+LH P L+V+ + RGN+ TR ++ E +A LLA AG+ R
Sbjct: 117 TLPQGAIVATSSLRRRSQLLHLRPDLEVI-DMRGNLNTRFKRFEEGDAEAMLLAFAGVHR 175
Query: 244 LSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYK 303
L +E++ I+S DD+LPAV QGA+GI R +DE+ T +LN + +LC K
Sbjct: 176 LEFSEHIAEIISFDDILPAVGQGALGIETRIDDEE-----TRELLKVLN--HAETELCTK 228
Query: 304 LHFGFLNLVE 313
L +E
Sbjct: 229 CERSLLRTLE 238
>sp|B1J1V2|HEM3_PSEPW Porphobilinogen deaminase OS=Pseudomonas putida (strain W619)
GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/212 (52%), Positives = 141/212 (66%), Gaps = 5/212 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
IRI TR S LAL QA + +L HP L + +V + + GDK+L PLA IGGKGL
Sbjct: 6 IRIATRKSALALWQAEYVKARLEQAHPGLL----VTLVPMVSRGDKLLDAPLAKIGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KE++ AL++++ DIAVHSMKDVP PE L C +RED RDAF+S +SL LPA
Sbjct: 62 FVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNRFSSLDALPA 121
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
GSIVGT+SLRR++Q+L R P L++ RGNV TRL KL+ A +LA AGL RL
Sbjct: 122 GSIVGTSSLRRQAQLLARRPDLQI-RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFE 180
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 279
E +T +SVDD LPA QGA+GI CRS D ++
Sbjct: 181 ERITASISVDDSLPAGGQGAVGIECRSADSEI 212
>sp|B3E2H7|HEM3_GEOLS Porphobilinogen deaminase OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=hemC PE=3 SV=1
Length = 312
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 148/221 (66%), Gaps = 9/221 (4%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
+RIGTR S LAL QA+ T+++L A +P + +++V IKT GDKIL PLA +GGKGL
Sbjct: 6 LRIGTRASQLALWQANWTKSELEARYPGIQ----VELVKIKTMGDKILDVPLAQVGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KEI+EA++ +ID+AVHSMKDVPT PE L +RED RDAFIS + +EL
Sbjct: 62 FVKEIEEAMLRGEIDLAVHSMKDVPTEFPEGLGLVVTTKREDPRDAFIS-DKVTFSELRQ 120
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G+ +GT++LRR++Q+L P L+ M RGNV+TR+RKL E + A +LA AGL RL T
Sbjct: 121 GARIGTSALRRQAQLLKARPDLE-MVIIRGNVETRIRKLKEDNLDAVILAAAGLNRLGFT 179
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVP---FTTH 285
+ VT +L D +PA+ QGA+G+ CR +D + F H
Sbjct: 180 DVVTELLDTDFSIPAIGQGALGLECRLDDNATIEALAFLNH 220
>sp|P0A1Q8|HEM3_SALTY Porphobilinogen deaminase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++ LMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ + DIAVHSMKDVP P+ L +RED RDAF+S SL +LP
Sbjct: 61 LFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLGKLDNGDYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK----MVPFTTHSQASI 290
+ L D LPAV QGA+GI CR +D + + P HSQ ++
Sbjct: 180 ESRIRTALPPDVSLPAVGQGAVGIECRLDDARTQALLAPL-NHSQTAL 226
>sp|P0A1Q9|HEM3_SALTI Porphobilinogen deaminase OS=Salmonella typhi GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++ LMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ + DIAVHSMKDVP P+ L +RED RDAF+S SL +LP
Sbjct: 61 LFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLGKLDNGDYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK----MVPFTTHSQASI 290
+ L D LPAV QGA+GI CR +D + + P HSQ ++
Sbjct: 180 ESRIRTALPPDVSLPAVGQGAVGIECRLDDARTQALLAPL-NHSQTAL 226
>sp|B4TNV3|HEM3_SALSV Porphobilinogen deaminase OS=Salmonella schwarzengrund (strain
CVM19633) GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++ LMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ + DIAVHSMKDVP P+ L +RED RDAF+S SL +LP
Sbjct: 61 LFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLGKLDNGDYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK----MVPFTTHSQASI 290
+ L D LPAV QGA+GI CR +D + + P HSQ ++
Sbjct: 180 ESRIRTALPPDVSLPAVGQGAVGIECRLDDARTQALLAPL-NHSQTAL 226
>sp|B5BIU8|HEM3_SALPK Porphobilinogen deaminase OS=Salmonella paratyphi A (strain
AKU_12601) GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++ LMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ + DIAVHSMKDVP P+ L +RED RDAF+S SL +LP
Sbjct: 61 LFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLGKLDNGDYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK----MVPFTTHSQASI 290
+ L D LPAV QGA+GI CR +D + + P HSQ ++
Sbjct: 180 ESRIRTALPPDVSLPAVGQGAVGIECRLDDARTQALLAPL-NHSQTAL 226
>sp|C0Q3B3|HEM3_SALPC Porphobilinogen deaminase OS=Salmonella paratyphi C (strain
RKS4594) GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++ LMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ + DIAVHSMKDVP P+ L +RED RDAF+S SL +LP
Sbjct: 61 LFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLGKLDNGDYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK----MVPFTTHSQASI 290
+ L D LPAV QGA+GI CR +D + + P HSQ ++
Sbjct: 180 ESRIRTALPPDVSLPAVGQGAVGIECRLDDARTQALLAPL-NHSQTAL 226
>sp|Q5PKL7|HEM3_SALPA Porphobilinogen deaminase OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++ LMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ + DIAVHSMKDVP P+ L +RED RDAF+S SL +LP
Sbjct: 61 LFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLGKLDNGDYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK----MVPFTTHSQASI 290
+ L D LPAV QGA+GI CR +D + + P HSQ ++
Sbjct: 180 ESRIRTALPPDVSLPAVGQGAVGIECRLDDARTQALLAPL-NHSQTAL 226
>sp|B5FN93|HEM3_SALDC Porphobilinogen deaminase OS=Salmonella dublin (strain CT_02021853)
GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++ LMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ + DIAVHSMKDVP P+ L +RED RDAF+S SL +LP
Sbjct: 61 LFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLGKLDNGDYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK----MVPFTTHSQASI 290
+ L D LPAV QGA+GI CR +D + + P HSQ ++
Sbjct: 180 ESRIRTALPPDVSLPAVGQGAVGIECRLDDARTQALLAPL-NHSQTAL 226
>sp|B0KH05|HEM3_PSEPG Porphobilinogen deaminase OS=Pseudomonas putida (strain GB-1)
GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 140/209 (66%), Gaps = 5/209 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
IRI TR S LAL QA + +L HP L + +V + + GDK+L PLA IGGKGL
Sbjct: 6 IRIATRKSALALWQAEYVKARLEQAHPGLL----VTLVPMVSRGDKLLDAPLAKIGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KE++ AL++++ DIAVHSMKDVP PE L C +RED RDAF+S + SL LPA
Sbjct: 62 FVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNTFDSLEALPA 121
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
GSIVGT+SLRR++Q+L R P L++ RGNV TRL KL+ A +LA AGL RL
Sbjct: 122 GSIVGTSSLRRQAQLLARRPDLQI-RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFE 180
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSND 276
+ +T+ +SVDD LPA QGA+GI CRS D
Sbjct: 181 DRITSTISVDDSLPAGGQGAVGIECRSAD 209
>sp|A8G848|HEM3_SERP5 Porphobilinogen deaminase OS=Serratia proteamaculans (strain 568)
GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/211 (51%), Positives = 143/211 (67%), Gaps = 5/211 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH + +LMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQQRLMANHPGLQ----VELVPMVTKGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL++ + DIAVHSMKDVP P L +R+D RDAF+S SL +LP
Sbjct: 61 LFVKELELALLDGRADIAVHSMKDVPVDFPAGLGLVTICERDDPRDAFVSNRFTSLDQLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
GS+VGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 QGSVVGTSSLRRQCQLRERRPDL-IVRDLRGNVGTRLSKLDNGDYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDE 277
+ + + LS ++ LPAV QGA+GI CR +DE
Sbjct: 180 EQRIRSPLSPEECLPAVGQGAVGIECRLDDE 210
>sp|B1JPE6|HEM3_YERPY Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype
O:3 (strain YPIII) GN=hemC PE=3 SV=1
Length = 313
Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH ++ L A HP L I++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL++ + DIAVHSMKDVP PE L +RED RDAF+S L +LP
Sbjct: 61 LFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYTHLDDLP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGS+VGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ QA +LA+AGLKRL +
Sbjct: 121 AGSVVGTSSLRRQCQLRERRPDL-IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSND 276
+ +S ++ LPAV QGA+GI CR +D
Sbjct: 180 ENRIRYAMSAEESLPAVGQGAVGIECRLDD 209
>sp|B1KQC6|HEM3_SHEWM Porphobilinogen deaminase OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=hemC PE=3 SV=1
Length = 309
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 145/213 (68%), Gaps = 5/213 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
+IRI TR SPLAL QA + +L HP+L ++++ + T GD IL PLA +GGKG
Sbjct: 5 VIRIATRKSPLALWQAEFVKAELEKFHPDLT----VELLPMSTKGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ A++ ++ DIAVHSMKDVP PE L +RED RDAF+S + S++ELP
Sbjct: 61 LFVKELEVAMLENRADIAVHSMKDVPVDFPEGLGLEIICEREDPRDAFVSNNYKSISELP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
G++VGT+SLRR+ QI P L++ + RGNV TRL KL+ A +LA AGLKRL +
Sbjct: 121 KGAVVGTSSLRRQCQIRAARPDLQI-RDLRGNVGTRLGKLDAGTYDAIILAAAGLKRLKL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 279
E +T+ +S ++ LPA QGA+GI CR++DE++
Sbjct: 180 EERITSFISAEESLPANGQGAVGIECRTDDERV 212
>sp|A1JI86|HEM3_YERE8 Porphobilinogen deaminase OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=hemC PE=3 SV=1
Length = 313
Score = 201 bits (511), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
IIRI TR SPLAL QAH ++ L A HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----VELVPMVTRGDIILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ + DIAVHSMKDVP PE L +R+D RDAF+S++ A L ELP
Sbjct: 61 LFVKELELALLEGRADIAVHSMKDVPIAFPEGLGLVTICERDDPRDAFVSINYAHLDELP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL++ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLRERRPDL-IIRDLRGNVGTRLAKLDKGEYHAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSND 276
+ + ++ LPAV QGA+GI CR +D
Sbjct: 180 ETRIRYAMPAEESLPAVGQGAVGIECRLDD 209
>sp|A1WVT9|HEM3_HALHL Porphobilinogen deaminase OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=hemC PE=3 SV=1
Length = 310
Score = 201 bits (510), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 141/216 (65%), Gaps = 5/216 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
+RI TR S LA+ QA +L LHP L +++V + T GD+IL QPLA IGGKGL
Sbjct: 6 LRIATRRSQLAMWQAEHIAAELQRLHPGLE----VELVPMSTRGDEILDQPLARIGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KE+++ ++ + D+AVHSMKD+P LPE L R D RDAF+S + L ELP
Sbjct: 62 FMKELEDGMLRGEADLAVHSMKDIPWRLPEGFDLAAVSDRADPRDAFVSNHYSDLDELPH 121
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
G+ VGTASLRR+ QI+ R P L++ E RGNVQTRLRKL++ V A +LA +GL RL +T
Sbjct: 122 GARVGTASLRRQCQIMDRRPDLQI-EVLRGNVQTRLRKLDDGVYDAIILAASGLDRLELT 180
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFT 283
+ L+ + LPAV QGA+GI CR DE+++
Sbjct: 181 HRIAGRLTPEQSLPAVGQGALGIECREGDERVMKLV 216
>sp|Q500N6|HEM3_PSEU2 Porphobilinogen deaminase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=hemC PE=3 SV=1
Length = 313
Score = 201 bits (510), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 110/212 (51%), Positives = 142/212 (66%), Gaps = 5/212 (2%)
Query: 68 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGL 127
IRI TR S LAL QA + +L HP L + +V + + GDK+L PL+ IGGKGL
Sbjct: 6 IRIATRKSALALWQAEYVKARLEQAHPGLL----VTLVPMVSRGDKLLDSPLSKIGGKGL 61
Query: 128 FTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPA 187
F KE++ AL+ + DIAVHSMKDVP P+ L C +RED RDAF+S + ASL +LPA
Sbjct: 62 FVKELETALLENNADIAVHSMKDVPMDFPQGLGLFCICEREDPRDAFVSNTFASLDQLPA 121
Query: 188 GSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT 247
GSIVGT+SLRR++Q+L R P L++ RGNV TRL KL+ A +LA AGL RL
Sbjct: 122 GSIVGTSSLRRQAQLLARRPDLQI-RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFE 180
Query: 248 ENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 279
+ +T+ +SVDD LPA QGA+GI CRS D ++
Sbjct: 181 DRITSAISVDDSLPAGGQGAVGIECRSVDAEI 212
>sp|Q8FBP1|HEM3_ECOL6 Porphobilinogen deaminase OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=hemC PE=3 SV=2
Length = 313
Score = 200 bits (509), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 109/212 (51%), Positives = 142/212 (66%), Gaps = 5/212 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++KLMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ ++ DIAVHSMKDVP P+ L +RED RDAF+S + SL LP
Sbjct: 61 LFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNTYDSLDALP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278
+ L + LPAV QGA+GI CR +D +
Sbjct: 180 ESRIRAALPPEISLPAVGQGAVGIECRLDDAR 211
>sp|Q83PH4|HEM3_SHIFL Porphobilinogen deaminase OS=Shigella flexneri GN=hemC PE=3 SV=2
Length = 313
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/212 (51%), Positives = 142/212 (66%), Gaps = 5/212 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++KLMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ ++ DIAVHSMKDVP P+ L +RED RDAF+S + SL LP
Sbjct: 61 LFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278
+ L + LPAV QGA+GI CR +D +
Sbjct: 180 ESRIRAALPPEISLPAVGQGAVGIECRLDDTR 211
>sp|P06983|HEM3_ECOLI Porphobilinogen deaminase OS=Escherichia coli (strain K12) GN=hemC
PE=1 SV=2
Length = 313
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/212 (51%), Positives = 142/212 (66%), Gaps = 5/212 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++KLMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ ++ DIAVHSMKDVP P+ L +RED RDAF+S + SL LP
Sbjct: 61 LFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278
+ L + LPAV QGA+GI CR +D +
Sbjct: 180 ESRIRAALPPEISLPAVGQGAVGIECRLDDSR 211
>sp|B1XAH2|HEM3_ECODH Porphobilinogen deaminase OS=Escherichia coli (strain K12 / DH10B)
GN=hemC PE=3 SV=1
Length = 313
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/212 (51%), Positives = 142/212 (66%), Gaps = 5/212 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++KLMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ ++ DIAVHSMKDVP P+ L +RED RDAF+S + SL LP
Sbjct: 61 LFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278
+ L + LPAV QGA+GI CR +D +
Sbjct: 180 ESRIRAALPPEISLPAVGQGAVGIECRLDDSR 211
>sp|C4ZZ69|HEM3_ECOBW Porphobilinogen deaminase OS=Escherichia coli (strain K12 / MC4100
/ BW2952) GN=hemC PE=3 SV=1
Length = 313
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/212 (51%), Positives = 142/212 (66%), Gaps = 5/212 (2%)
Query: 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
++RI TR SPLAL QAH ++KLMA HP L +++V + T GD IL PLA +GGKG
Sbjct: 5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKG 60
Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
LF KE++ AL+ ++ DIAVHSMKDVP P+ L +RED RDAF+S + SL LP
Sbjct: 61 LFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALP 120
Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
AGSIVGT+SLRR+ Q+ R P L ++ + RGNV TRL KL+ A +LA+AGLKRL +
Sbjct: 121 AGSIVGTSSLRRQCQLAERRPDL-IIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGL 179
Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278
+ L + LPAV QGA+GI CR +D +
Sbjct: 180 ESRIRAALPPEISLPAVGQGAVGIECRLDDSR 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,075,970
Number of Sequences: 539616
Number of extensions: 4120675
Number of successful extensions: 12403
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10843
Number of HSP's gapped (non-prelim): 484
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)