Query 020472
Match_columns 326
No_of_seqs 115 out of 1168
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gtk_A Porphobilinogen deamina 100.0 1.4E-91 4.9E-96 670.2 25.4 238 66-315 4-241 (313)
2 3ecr_A Porphobilinogen deamina 100.0 1.2E-89 4.2E-94 666.1 24.8 241 63-315 19-263 (364)
3 3ksx_A Nitrate transport prote 97.3 0.012 4E-07 53.2 17.2 149 63-241 26-189 (324)
4 3kzg_A Arginine 3RD transport 96.9 0.0041 1.4E-07 52.4 8.7 144 130-284 53-209 (237)
5 3un6_A Hypothetical protein sa 96.6 0.0056 1.9E-07 56.1 8.4 146 64-239 50-211 (341)
6 3qax_A Probable ABC transporte 96.4 0.01 3.4E-07 50.4 8.0 148 131-284 81-232 (268)
7 3uif_A Sulfonate ABC transport 96.3 0.033 1.1E-06 51.1 11.6 147 65-240 5-176 (348)
8 3tql_A Arginine-binding protei 96.3 0.01 3.6E-07 48.7 7.5 147 130-284 51-207 (227)
9 1xs5_A 29 kDa protein, membran 96.1 0.037 1.3E-06 50.2 10.8 180 65-287 2-220 (241)
10 3del_B Arginine binding protei 96.1 0.011 3.8E-07 49.6 6.9 148 131-284 61-211 (242)
11 2y7i_A STM4351; arginine-bindi 95.6 0.12 4.1E-06 42.6 10.9 147 131-284 56-207 (229)
12 3k4u_A Binding component of AB 95.5 0.026 9.1E-07 47.7 6.8 142 131-284 55-207 (245)
13 2yln_A Putative ABC transporte 95.3 0.031 1.1E-06 49.3 6.8 142 131-284 107-256 (283)
14 1wdn_A GLNBP, glutamine bindin 95.2 0.087 3E-06 43.1 8.7 141 131-284 52-201 (226)
15 3kbr_A Cyclohexadienyl dehydra 95.1 0.022 7.5E-07 47.7 4.7 145 131-284 65-216 (239)
16 1sw5_A Osmoprotection protein 95.0 0.28 9.5E-06 44.2 12.2 187 66-287 6-238 (275)
17 2x26_A Periplasmic aliphatic s 95.0 0.093 3.2E-06 46.5 8.8 148 65-240 2-162 (308)
18 2yjp_A Putative ABC transporte 94.9 0.12 4.1E-06 45.6 9.3 143 131-284 108-255 (291)
19 3mpk_A Virulence sensor protei 94.9 0.12 4.1E-06 44.8 8.9 143 130-284 82-232 (267)
20 1p99_A Hypothetical protein PG 94.2 0.099 3.4E-06 48.7 7.4 136 65-238 38-208 (295)
21 4h5g_A Amino acid ABC superfam 94.2 0.15 5.3E-06 43.6 8.0 145 131-284 65-216 (243)
22 4i62_A Amino acid ABC transpor 94.2 0.18 6.2E-06 42.6 8.3 147 130-284 91-243 (269)
23 4eq9_A ABC transporter substra 94.2 0.22 7.4E-06 41.5 8.6 144 130-284 57-214 (246)
24 3i6v_A Periplasmic His/Glu/Gln 94.0 0.13 4.6E-06 43.4 7.2 138 131-284 55-196 (232)
25 1ii5_A SLR1257 protein; membra 93.8 0.17 5.7E-06 41.7 7.2 134 130-277 55-199 (233)
26 1zbm_A Hypothetical protein AF 93.8 0.15 5E-06 44.9 7.2 100 130-237 48-151 (280)
27 2v25_A Major cell-binding fact 93.6 0.27 9.2E-06 41.1 8.3 141 131-284 92-240 (259)
28 3gxa_A Outer membrane lipoprot 93.3 0.11 3.6E-06 49.1 5.8 115 63-204 20-142 (275)
29 2czl_A Hypothetical protein TT 93.1 0.27 9.2E-06 43.0 7.7 101 130-237 40-144 (272)
30 4gvo_A LMO2349 protein; struct 92.9 0.19 6.5E-06 43.0 6.4 140 131-284 60-214 (243)
31 2q88_A EHUB, putative ABC tran 92.8 0.045 1.6E-06 46.4 2.2 144 131-284 63-219 (257)
32 4f3p_A Glutamine-binding perip 92.4 0.15 5.2E-06 43.2 5.1 140 131-284 73-221 (249)
33 3k2d_A ABC-type metal ION tran 92.3 0.2 6.8E-06 46.3 6.0 113 65-204 5-125 (237)
34 3hv1_A Polar amino acid ABC up 92.3 0.26 9E-06 42.2 6.4 142 131-284 71-227 (268)
35 1xt8_A Putative amino-acid tra 92.2 0.44 1.5E-05 41.6 8.0 143 131-284 97-244 (292)
36 3qsl_A Putative exported prote 92.1 0.19 6.3E-06 44.7 5.5 108 131-241 76-198 (346)
37 3h7m_A Sensor protein; histidi 92.0 0.2 6.8E-06 41.3 5.2 140 131-284 61-209 (234)
38 1lst_A Lysine, arginine, ornit 92.0 0.22 7.6E-06 41.4 5.5 105 131-241 54-165 (239)
39 2y7p_A LYSR-type regulatory pr 92.0 0.44 1.5E-05 39.8 7.4 59 64-147 6-64 (218)
40 2vha_A Periplasmic binding tra 91.7 0.38 1.3E-05 41.7 6.9 142 131-284 74-227 (287)
41 4ef1_A Pheromone COB1/lipoprot 91.6 0.19 6.4E-06 46.5 5.1 189 64-288 2-226 (246)
42 2pyy_A Ionotropic glutamate re 90.9 0.44 1.5E-05 38.8 6.2 105 130-242 51-163 (228)
43 3hn0_A Nitrate transport prote 90.5 0.75 2.6E-05 41.4 7.8 135 64-238 3-151 (283)
44 3ir1_A Outer membrane lipoprot 90.3 0.39 1.3E-05 44.6 5.8 111 66-204 1-120 (245)
45 4ib2_A Putative lipoprotein; p 90.0 0.28 9.4E-06 45.6 4.6 111 66-204 11-129 (252)
46 3jv9_A OXYR, transcriptional r 89.9 1.5 5.1E-05 35.2 8.5 181 65-286 3-206 (219)
47 3up9_A Putative uncharacterize 89.8 0.19 6.7E-06 46.5 3.4 114 64-204 5-126 (245)
48 3tqw_A Methionine-binding prot 89.8 0.37 1.3E-05 44.5 5.2 114 65-205 2-123 (240)
49 3oxn_A Putative transcriptiona 89.6 1.3 4.4E-05 36.8 8.0 177 63-276 16-202 (241)
50 2pvu_A ARTJ; basic amino acid 89.3 0.39 1.3E-05 41.4 4.7 107 130-242 90-201 (272)
51 1i6a_A OXYR, hydrogen peroxide 89.2 1.2 4.2E-05 36.5 7.5 59 65-148 4-62 (219)
52 2pfz_A Putative exported prote 89.2 13 0.00043 33.8 16.6 156 67-250 2-195 (301)
53 2iee_A ORF2, probable ABC tran 89.2 0.89 3E-05 39.3 7.0 140 131-284 74-225 (271)
54 4got_A Methionine-binding lipo 89.1 0.48 1.7E-05 43.9 5.5 192 63-288 3-229 (249)
55 2pfy_A Putative exported prote 88.8 13 0.00045 33.5 16.3 156 67-250 3-196 (301)
56 2fyi_A HTH-type transcriptiona 88.0 1.1 3.9E-05 37.1 6.6 186 64-286 12-212 (228)
57 2ql3_A Probable transcriptiona 87.9 7.6 0.00026 31.1 11.4 137 65-235 4-154 (209)
58 3p7i_A PHND, subunit of alkylp 87.0 1.4 4.9E-05 40.8 7.3 156 63-244 11-191 (321)
59 3onm_A Transcriptional regulat 86.7 1.3 4.5E-05 36.9 6.3 136 64-234 25-165 (238)
60 3ho7_A OXYR; beta-alpha-barrel 86.3 2.9 0.0001 34.0 8.1 186 64-286 9-210 (232)
61 4dz1_A DALS D-alanine transpor 85.8 0.48 1.6E-05 40.6 3.2 140 130-284 78-233 (259)
62 1uth_A LYSR-type regulatory pr 85.6 1.6 5.4E-05 38.6 6.6 59 65-148 104-162 (315)
63 3ix1_A N-formyl-4-amino-5-amin 85.4 3 0.0001 36.7 8.3 99 131-235 46-157 (302)
64 2ozz_A Hypothetical protein YH 85.1 0.33 1.1E-05 44.4 1.9 167 86-286 34-209 (231)
65 4ab5_A Transcriptional regulat 85.0 12 0.00041 29.9 11.1 137 64-235 6-156 (222)
66 1twy_A ABC transporter, peripl 84.5 5.7 0.00019 33.6 9.3 59 64-148 26-84 (290)
67 2a5s_A N-methyl-D-aspartate re 82.2 0.58 2E-05 41.3 2.2 108 131-243 96-219 (284)
68 1us5_A Putative GLUR0 ligand b 82.1 16 0.00055 32.0 11.6 144 65-237 18-187 (314)
69 3hhf_B Transcriptional regulat 80.9 3.6 0.00012 32.8 6.4 138 64-239 5-156 (213)
70 2esn_A Probable transcriptiona 80.5 2.5 8.4E-05 36.7 5.6 146 64-239 99-255 (310)
71 2x7q_A Ca3427, possible thiami 80.1 2.8 9.7E-05 37.7 6.1 101 131-236 57-176 (321)
72 4ddd_A Immunogenic protein; ss 79.5 18 0.00062 33.2 11.5 147 65-237 31-202 (327)
73 2hxr_A HTH-type transcriptiona 79.4 5.2 0.00018 32.9 7.0 142 64-238 28-181 (238)
74 3cvg_A Putative metal binding 78.3 4.3 0.00015 36.5 6.7 60 64-148 18-82 (294)
75 3fzv_A Probable transcriptiona 77.8 32 0.0011 29.3 16.2 140 64-234 93-243 (306)
76 4esw_A Pyrimidine biosynthesis 77.3 12 0.00042 33.9 9.5 112 132-248 51-182 (342)
77 2g29_A Nitrate transport prote 77.1 5.7 0.0002 37.7 7.5 102 131-239 75-213 (417)
78 1ixc_A CBNR, LYSR-type regulat 76.2 35 0.0012 28.9 13.9 140 64-235 89-242 (294)
79 3fxq_A LYSR type regulator of 74.3 42 0.0014 28.9 13.8 188 64-286 90-291 (305)
80 2vpn_A Periplasmic substrate b 74.3 51 0.0017 29.9 13.7 112 130-250 46-198 (316)
81 3n5l_A Binding protein compone 72.4 5.7 0.00019 36.2 5.9 154 65-244 3-182 (310)
82 2zzv_A ABC transporter, solute 70.6 67 0.0023 29.7 16.7 153 66-246 34-228 (361)
83 2h98_A HTH-type transcriptiona 67.6 64 0.0022 28.3 13.2 135 67-235 91-243 (313)
84 3tmg_A Glycine betaine, L-prol 66.9 17 0.0006 32.8 7.9 184 64-286 14-231 (280)
85 2i49_A Bicarbonate transporter 66.1 8.1 0.00028 37.3 5.8 102 131-238 78-220 (429)
86 2h9b_A HTH-type transcriptiona 65.5 68 0.0023 27.8 13.6 140 67-239 91-246 (312)
87 3l6g_A Betaine ABC transporter 64.9 20 0.00069 32.0 7.8 184 66-286 2-214 (256)
88 1al3_A Cys regulon transcripti 59.9 11 0.00036 33.3 4.9 187 64-287 91-292 (324)
89 2rin_A Putative glycine betain 54.5 39 0.0013 30.7 7.9 189 65-287 6-231 (298)
90 3oxn_A Putative transcriptiona 54.2 14 0.00049 30.3 4.5 48 189-237 21-75 (241)
91 2hxr_A HTH-type transcriptiona 53.7 17 0.0006 29.6 5.0 48 189-237 32-86 (238)
92 3hhg_A Transcriptional regulat 53.7 34 0.0012 29.1 7.0 57 64-148 91-147 (306)
93 4ecf_A ABC-type phosphate tran 52.0 47 0.0016 29.4 7.9 58 65-148 3-60 (264)
94 4ab5_A Transcriptional regulat 51.7 9.5 0.00032 30.5 3.0 47 190-237 11-64 (222)
95 2rc8_A Glutamate [NMDA] recept 50.6 8.6 0.00029 33.9 2.7 110 131-244 107-231 (294)
96 2ql3_A Probable transcriptiona 50.3 19 0.00066 28.6 4.6 41 196-237 21-61 (209)
97 2b4l_A Glycine betaine-binding 48.6 60 0.002 29.3 8.1 95 64-185 163-266 (268)
98 1i6a_A OXYR, hydrogen peroxide 47.0 16 0.00054 29.7 3.6 47 190-237 8-61 (219)
99 3ho7_A OXYR; beta-alpha-barrel 46.5 20 0.00069 28.8 4.2 49 189-238 13-68 (232)
100 1pb7_A N-methyl-D-aspartate re 45.0 3.8 0.00013 36.4 -0.5 27 216-242 203-229 (292)
101 3r6u_A Choline-binding protein 44.8 49 0.0017 30.3 7.0 188 66-287 12-246 (284)
102 3kos_A HTH-type transcriptiona 43.9 16 0.00054 29.4 3.1 136 64-235 10-155 (219)
103 3mz1_A Putative transcriptiona 41.6 56 0.0019 27.3 6.4 58 64-149 86-143 (300)
104 3szp_A Transcriptional regulat 40.3 27 0.00094 29.2 4.2 140 64-241 89-241 (291)
105 2i6e_A Hypothetical protein; N 40.1 60 0.0021 29.6 6.8 99 130-238 48-155 (301)
106 3o66_A Glycine betaine/carniti 39.7 71 0.0024 29.2 7.2 191 64-287 7-245 (282)
107 1r9l_A Glycine betaine-binding 39.3 49 0.0017 30.2 6.1 145 65-236 7-187 (309)
108 2hzl_A Trap-T family sorbitol/ 39.0 2.1E+02 0.0071 26.3 10.4 142 66-237 32-216 (365)
109 2h9b_A HTH-type transcriptiona 38.0 38 0.0013 29.4 4.9 40 197-237 107-146 (312)
110 2fyi_A HTH-type transcriptiona 37.0 35 0.0012 27.8 4.3 48 189-237 16-70 (228)
111 2h98_A HTH-type transcriptiona 36.6 36 0.0012 29.9 4.6 40 197-237 107-146 (313)
112 3onm_A Transcriptional regulat 36.2 35 0.0012 28.0 4.2 49 189-238 29-84 (238)
113 4exl_A PBP 1, phosphate-bindin 36.1 1.6E+02 0.0054 26.0 8.8 57 65-147 3-59 (265)
114 2y7p_A LYSR-type regulatory pr 35.7 21 0.00071 29.4 2.7 48 189-237 10-64 (218)
115 3jv9_A OXYR, transcriptional r 35.2 34 0.0012 27.0 3.8 48 190-238 7-61 (219)
116 1twy_A ABC transporter, peripl 34.3 50 0.0017 27.6 4.9 49 189-238 30-84 (290)
117 1atg_A MODA, periplasmic molyb 32.8 1E+02 0.0035 24.6 6.4 54 67-147 1-55 (231)
118 1ixc_A CBNR, LYSR-type regulat 31.6 46 0.0016 28.1 4.3 41 196-237 107-147 (294)
119 1ex2_A Protein MAF; structural 28.3 33 0.0011 30.2 2.8 24 189-212 5-28 (189)
120 2amh_A Septum formation protei 27.1 23 0.0008 31.6 1.6 31 190-221 13-45 (207)
121 3fxq_A LYSR type regulator of 26.5 33 0.0011 29.6 2.5 41 197-238 109-149 (305)
122 3fzv_A Probable transcriptiona 25.9 58 0.002 27.7 3.9 40 197-237 112-151 (306)
123 2nxo_A Hypothetical protein SC 25.8 28 0.00095 30.9 1.9 62 130-194 43-107 (291)
124 1al3_A Cys regulon transcripti 24.0 69 0.0024 28.0 4.1 41 196-237 109-149 (324)
125 2de3_A Dibenzothiophene desulf 21.0 2E+02 0.0069 26.5 6.8 18 222-239 210-227 (365)
No 1
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=100.00 E-value=1.4e-91 Score=670.22 Aligned_cols=238 Identities=47% Similarity=0.672 Sum_probs=213.6
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEEE
Q 020472 66 AIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAV 145 (326)
Q Consensus 66 ~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiAV 145 (326)
++||||||+|+||+|||++|+++|++.||++ +||+++|+|+||+++++||++|||||+||||||+||++|+|||||
T Consensus 4 ~~irIgTR~S~LAl~Qa~~V~~~L~~~~p~~----~~ei~~i~T~GD~i~d~pL~~iGgkGlFtkELe~aLl~g~iDiAV 79 (313)
T 1gtk_A 4 NVLRIATRQSPLALWQAHYVKDKLMASHPGL----VVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAV 79 (313)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHHCTTC----EEEEEECC-----------------CTTHHHHHHHHHTTSCSEEE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHHhCCCC----cEEEEeeecCCcccccccHHHcCCccchHHHHHHHHHcCCCcEEE
Confidence 5699999999999999999999999999987 599999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecCChHHHHHHHhhCCCCEEEeccCCCHHHHHhh
Q 020472 146 HSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRK 225 (326)
Q Consensus 146 HSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTSS~RR~aQL~~~~Pdl~v~~~iRGNV~TRL~K 225 (326)
|||||||+++|+||.|+||++|+||||+||++++.++.+||+|++|||||+||++||+++|||++|+ ++||||+|||+|
T Consensus 80 HSlKDvPt~lp~gl~l~av~~RedprDalV~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdl~i~-~lRGNV~TRL~K 158 (313)
T 1gtk_A 80 HSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIR-SLRGNVGTRLSK 158 (313)
T ss_dssp EEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEE-CCCSCHHHHHHH
T ss_pred ecCCCCCCCCCCCcEEEEEecCCCcceEEEECCCCChhhCCCCCEEecCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHH
Confidence 9999999999999999999999999999999998899999999999999999999999999999999 999999999999
Q ss_pred hccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHhhhhccccccccccccccchhHHHH
Q 020472 226 LNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLH 305 (326)
Q Consensus 226 L~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL~~~~~~~~n~~~~~~~~c~~~e 305 (326)
|++|+|||||||+|||+|||+.++++++|++++|+|||||||||||||++|+++.++|+.++. . .+..|+..|
T Consensus 159 L~~g~~DaiiLA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGalaIe~r~~d~~~~~ll~~l~d-----~--~t~~~~~aE 231 (313)
T 1gtk_A 159 LDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNH-----H--ETALRVTAE 231 (313)
T ss_dssp HHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGCC-----H--HHHHHHHHH
T ss_pred hhCCCCCEEEHhhhHHHHcCCccccceeeChhhcCCCcCCceEEEEEccCcHHHHHHHHHCCC-----H--HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999962 2 238899999
Q ss_pred HHHHhhhchh
Q 020472 306 FGFLNLVELR 315 (326)
Q Consensus 306 r~~l~~l~~~ 315 (326)
|.||+.|++|
T Consensus 232 Ra~l~~L~Gg 241 (313)
T 1gtk_A 232 RAMNTRLEGG 241 (313)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHhCCC
Confidence 9999999987
No 2
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=100.00 E-value=1.2e-89 Score=666.13 Aligned_cols=241 Identities=39% Similarity=0.580 Sum_probs=209.7
Q ss_pred cCCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCc
Q 020472 63 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQID 142 (326)
Q Consensus 63 ~~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iD 142 (326)
+.+++||||||+|+||+|||++|+++|++.||++ +|||++|+|+||+++++||++|||||+||||||+||++|+||
T Consensus 19 ~~~~~irIGTR~S~LAl~Qa~~V~~~L~~~~p~~----~~eiv~i~T~GD~ild~pL~~iGgKGlFtkELe~ALl~g~iD 94 (364)
T 3ecr_A 19 PKMRVIRVGTRKSQLARIQTDSVVATLKASYPGL----QFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKNEVD 94 (364)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHHHHCTTS----EEEEEEC-------------------CCHHHHHHHHHTTSCS
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHHHhCCCC----eEEEEEeeccCccccCCcHHHcCCceeeHHHHHHHHhcCCCC
Confidence 5678999999999999999999999999999987 599999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC---ccCcccCCCCCEEecCChHHHHHHHhhCCCCEEEeccCCCH
Q 020472 143 IAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNV 219 (326)
Q Consensus 143 iAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~---~~~l~dLp~ga~IGTSS~RR~aQL~~~~Pdl~v~~~iRGNV 219 (326)
||||||||||+++|+||.|+||++|+||||+||+++ +.+|.+||+|++|||||+||++||+++|||++|+ ++||||
T Consensus 95 iAVHSlKDvPt~lp~gl~l~av~~ReDprDalV~~~~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdL~i~-~lRGNV 173 (364)
T 3ecr_A 95 LVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFR-SIRGNL 173 (364)
T ss_dssp EEEEEGGGSCSSCCTTEEEEEECCCCCCCEEEEECTTCTTCCTTTSCTTCEEECCCHHHHHHHHHHCTTSEEE-CCCSCH
T ss_pred EEEECcccCCCCCCCCcEEEEEcCCCCcceEEEEcCccCCCChhHCCCcCEEeCCcHHHHHHHHHHCCCCEEE-ECCCCH
Confidence 999999999999999999999999999999999975 6789999999999999999999999999999999 999999
Q ss_pred HHHHhhhcc-CCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHhhhhcccccccccccccc
Q 020472 220 QTRLRKLNE-RVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSG 298 (326)
Q Consensus 220 ~TRL~KL~~-ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL~~~~~~~~n~~~~~~ 298 (326)
+|||+||++ |+|||||||+|||+|||+.++|+++|++++|+|||||||||||||++|+++.++|+.++. . .+
T Consensus 174 ~TRL~KL~~gg~~DAiILA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGaLaIe~R~~D~~~~~ll~~l~d-----~--~T 246 (364)
T 3ecr_A 174 NTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD-----P--ET 246 (364)
T ss_dssp HHHHHHHHHSSSCSEEEEEHHHHHHTTCGGGCCEECCTTTCCBCTTTTCEEEEEETTCHHHHHHHHTTCC-----H--HH
T ss_pred HHHHHHhhcCCCcCEEEehhhHHhhcCCchheeEecChhhcCCccccceeEEEEecCCHHHHHHHHHcCC-----H--HH
Confidence 999999999 599999999999999999999999999999999999999999999999999999999962 2 23
Q ss_pred chhHHHHHHHHhhhchh
Q 020472 299 KLCYKLHFGFLNLVELR 315 (326)
Q Consensus 299 ~~c~~~er~~l~~l~~~ 315 (326)
..|+..||.||+.|++|
T Consensus 247 ~~~v~AERa~l~~L~GG 263 (364)
T 3ecr_A 247 LLRCIAERAFLRHLEGG 263 (364)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 78999999999999987
No 3
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.34 E-value=0.012 Score=53.25 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=89.6
Q ss_pred cCCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCc
Q 020472 63 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQID 142 (326)
Q Consensus 63 ~~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iD 142 (326)
....+||||.-.+......+. -...+++..+++ +++++.... | .++-++|.+|++|
T Consensus 26 ~~~~~lrig~~~~~~p~~~a~-~~g~~~~~~~g~----~v~~~~~~~-~------------------~~~~~al~~G~~D 81 (324)
T 3ksx_A 26 AEPAQLRIGYQKAVSSLVLAK-QHRLLEQRFPRT----KITWVEFPA-G------------------PQLLEALNVGSID 81 (324)
T ss_dssp CCCSEEEEEEETTCHHHHHHH-HHTHHHHHCTTS----EEEEEEESS-H------------------HHHHHHHHTTSCS
T ss_pred CCCCeEEEEecCCchhHHHHH-hhCHHHHhcCCC----ceEEEECCC-H------------------HHHHHHHHCCCCC
Confidence 345679999987754333332 234556665555 466664421 1 2567899999999
Q ss_pred EEEeeCCCCCC----CCCCCceeeeecCCCCCcceeeccC---ccCcccCCCCCEEecCC--hHH---HHHHHhhC---C
Q 020472 143 IAVHSMKDVPT----YLPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTAS--LRR---KSQILHRY---P 207 (326)
Q Consensus 143 iAVHSlKDlPt----~lp~gL~iaAv~kReDprD~LV~~~---~~~l~dLp~ga~IGTSS--~RR---~aQL~~~~---P 207 (326)
+++-+. .|. .-...+.+.+.........+++.++ .++++|| +|.+||+.. .-. ...++..- .
T Consensus 82 ~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s~I~s~~DL-kGk~i~v~~gs~~~~~~~~~l~~~Gl~~~ 158 (324)
T 3ksx_A 82 LGGAGD--IPPLFAQAAGADLLYVGWVPPTPKAETILVPSKSALRTVADL-KGKRIAFQKGSSAHNLLLRVLAKSGLSMR 158 (324)
T ss_dssp EEEEES--HHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGG-TTCEEEECTTSHHHHHHHHHHHHTTCCGG
T ss_pred EEeecC--HHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCCCCCCHHHh-CCCEEEecCCChHHHHHHHHHHHcCCCHH
Confidence 997653 111 0122455656554443345666654 3578888 588998752 111 11222221 2
Q ss_pred CCEEEeccCCCHHHHHhhhccCCccEEeeehhhh
Q 020472 208 SLKVMENFRGNVQTRLRKLNERVVQATLLALAGL 241 (326)
Q Consensus 208 dl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL 241 (326)
+++++ ++ +....+.-|.+|+.||+++...-.
T Consensus 159 ~v~~v-~~--~~~~~~~al~~G~vDa~~~~~p~~ 189 (324)
T 3ksx_A 159 DITPL-YL--SPANARAAFAAGQVDAWAIWDPWY 189 (324)
T ss_dssp GSEEE-EC--CHHHHHHHHHTTCCSEEEEETTHH
T ss_pred HeEEE-eC--CHHHHHHHHHcCCCCEEEEccHHH
Confidence 56777 66 578889999999999988865443
No 4
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=96.86 E-value=0.0041 Score=52.45 Aligned_cols=144 Identities=16% Similarity=0.214 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc---cCcccCCCCCEEecCChHH-HHHHHhh
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRR-KSQILHR 205 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~---~~l~dLp~ga~IGTSS~RR-~aQL~~~ 205 (326)
.++.++|.+|++|+++-++-.-|. ..+.+.... +=-....+++.+++ .+++|| .|.+||+..--- ...+...
T Consensus 53 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~fs~--p~~~~~~~~~~~~~~~~~~~~dL-~g~~i~~~~g~~~~~~~~~~ 128 (237)
T 3kzg_A 53 DDLFPALKNREVDLVIASMIITDE-RKKHFIFSL--PYMESNSQYITTVDSKISTFDDL-HGKKIGVRKGTPYARQVLSE 128 (237)
T ss_dssp GGHHHHHHTTSSSEECSSCBCCTT-GGGTCEECC--CSBCCEEEEEEETTCSCCSGGGG-TTCEEEEETTSTHHHHHHHT
T ss_pred HHHHHHHhCCCCCEEEEccccChh-Hhccceeee--eeeecceEEEEECCCCCCCHHHh-CCCEEEEecCCHHHHHHHHh
Confidence 357789999999998865533332 112222211 11122234555433 456777 478888754433 5677788
Q ss_pred CCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCc---------cceeeecCCCCCCCcccceeeeEeecCc
Q 020472 206 YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTE---------NVTNILSVDDMLPAVAQGAIGIACRSND 276 (326)
Q Consensus 206 ~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~---------~i~~~L~~~~~lPA~GQGaLAVe~R~dD 276 (326)
+|+.+++ .. .+.++-++.|.+|++||++.....+..+-... .+ .++.. |-....-+++.+++++
T Consensus 129 ~~~~~~~-~~-~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~----~~~~~~~~~~~~~k~~ 201 (237)
T 3kzg_A 129 NRNNQVI-FY-ELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKY-KLIGK----KISIGEGYSIMANPDQ 201 (237)
T ss_dssp CSSCEEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSE-EEEEE----EEECTTCBCCEECGGG
T ss_pred CCCCcEE-Ee-CCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCce-EEecC----ccccCccEEEEEcCCC
Confidence 9999988 44 58999999999999999999776544331111 11 11111 1112334567788887
Q ss_pred hhHHhhhh
Q 020472 277 EKMVPFTT 284 (326)
Q Consensus 277 ~~~~~lL~ 284 (326)
+++.+.++
T Consensus 202 ~~l~~~l~ 209 (237)
T 3kzg_A 202 FVLIKKIN 209 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665554
No 5
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=96.63 E-value=0.0056 Score=56.06 Aligned_cols=146 Identities=11% Similarity=0.028 Sum_probs=82.9
Q ss_pred CCceEEEEeCCCH--HHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCC
Q 020472 64 KVAIIRIGTRGSP--LALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQI 141 (326)
Q Consensus 64 ~~~~IrIGTR~S~--LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~i 141 (326)
...+|+||.-.+. ..+ .+.+.|+..+.+. +.+++++...+ -.++-++|.+|++
T Consensus 50 ~~~~l~vg~~~~~~~~p~----~~a~~l~g~~~~~--G~~Ve~~~~~~-------------------~~~~~~al~~G~~ 104 (341)
T 3un6_A 50 NQQVIKIGYLPITHSANL----MMTKKLLSQYNHP--KYKLELVKFNN-------------------WPDLMDALNSGRI 104 (341)
T ss_dssp -CCEEEEEECSSGGGHHH----HHHHHHHHTSSSC--SSEEEEEECSS-------------------HHHHHHHHHTTSS
T ss_pred CCceEEEEEEeccccHHH----HHHHHhhChHHHc--CCcEEEEEcCC-------------------HHHHHHHHHcCCC
Confidence 3568999986543 222 3444444444332 23455543211 1357789999999
Q ss_pred cEEEeeCCCCCCC--CCCCceeeeecCCCCCcceeeccC---ccCcccCCCCCEEecCC---hHH-H--HHHHhh--C-C
Q 020472 142 DIAVHSMKDVPTY--LPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTAS---LRR-K--SQILHR--Y-P 207 (326)
Q Consensus 142 DiAVHSlKDlPt~--lp~gL~iaAv~kReDprD~LV~~~---~~~l~dLp~ga~IGTSS---~RR-~--aQL~~~--~-P 207 (326)
|+++-..-..-.. .-..+.+++... .+ ..+++.++ .++++||++|.+||+++ ... . ..|+.. - .
T Consensus 105 D~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~ 182 (341)
T 3un6_A 105 DGASTLIELAMKSKQKGSNIKAVALGH-HE-GNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPG 182 (341)
T ss_dssp SEEEEEHHHHHHHHHTTCCCEEEEESC-EE-CEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTT
T ss_pred CEEecchHHHHHHHHCCCCeEEEeecC-CC-ceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHH
Confidence 9998664111000 111244455532 12 34555544 35789999999998653 222 1 123222 1 2
Q ss_pred CCEEEeccCCCHHHHHhhhccCCccEEeeehh
Q 020472 208 SLKVMENFRGNVQTRLRKLNERVVQATLLALA 239 (326)
Q Consensus 208 dl~v~~~iRGNV~TRL~KL~~ge~DAIILA~A 239 (326)
|++++ ++ +....+.-|.+|+.||+++...
T Consensus 183 dv~~~-~~--~~~~~~~al~~G~vDa~~~~~p 211 (341)
T 3un6_A 183 HFSYH-EM--SPAEMPAALSEHRITGYSVAEP 211 (341)
T ss_dssp SEEEE-EC--CGGGHHHHHHTTSCSEEEEETT
T ss_pred HeEEE-Ec--ChHHHHHHHHcCCCCEEEecCC
Confidence 67777 66 3556778899999999998544
No 6
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=96.39 E-value=0.01 Score=50.42 Aligned_cols=148 Identities=11% Similarity=0.074 Sum_probs=83.2
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc----cCcccCCCCCEEecCChHHHHHHHhhC
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELPAGSIVGTASLRRKSQILHRY 206 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~----~~l~dLp~ga~IGTSS~RR~aQL~~~~ 206 (326)
++-++|.+|++|+++.++-.-|. ..+.+....+. ......+++.++. ++++|| .|.+||+..---.......+
T Consensus 81 ~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~p~~-~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~ 157 (268)
T 3qax_A 81 ALILNLKKHRIDAILAGMSITPS-RQKEIALLPYY-GDEVQELMVVSKRSLETPVLPLT-QYSSVAVQTGTYQEHYLLSQ 157 (268)
T ss_dssp GHHHHHHHTSSSEECSCCBCCHH-HHTTSEEEEEE-CCCBCEEEEEEETTSCSCCCCGG-GSSCEEEETTSHHHHHHHTS
T ss_pred HHHHHHhCCCccEEeecCccCHh-Hhcceeeecce-ecccceEEEEECCCCCCCCHHHh-CCCEEEEecCcHHHHHHHhC
Confidence 46688999999999864432221 11222221111 1122345554432 456777 47778765444444444458
Q ss_pred CCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHhhhh
Q 020472 207 PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 284 (326)
Q Consensus 207 Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL~ 284 (326)
|+.+++ .. .+.+.-++.|.+|++||++....-+..+--+.....++.+ .+.+.+-.--+++.++++++++.+.++
T Consensus 158 ~~~~~~-~~-~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~l~~~l~ 232 (268)
T 3qax_A 158 PGICVR-SF-DSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRL-ELPPECWVLGCGLGVAKDRPEEIQTIQ 232 (268)
T ss_dssp TTCCEE-EE-SCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEE-ECCGGGCBCCEEEEECTTCHHHHHHHH
T ss_pred CCceEE-ec-CCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecC-ccCcccccccEEEEEeCCCHHHHHHHH
Confidence 899988 55 4889999999999999999976654443211111122211 111111001157788888887666554
No 7
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=96.33 E-value=0.033 Score=51.06 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=85.3
Q ss_pred CceEEEEeCC----------CHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHH
Q 020472 65 VAIIRIGTRG----------SPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDE 134 (326)
Q Consensus 65 ~~~IrIGTR~----------S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ 134 (326)
..+||||.-. +...+++..-+.+.+.+. ++ +++++.+...|+- .++-+
T Consensus 5 ~~~lrig~~~~~~~~~p~~~~~p~~a~~~gl~~~~~~~--G~----~v~~~~~~~~g~~----------------~~~~~ 62 (348)
T 3uif_A 5 LKVVRIASVATNVGGKTVYAGSASLVVNGAFPEELRKQ--GI----KVEWVPAAMASVG----------------PVINE 62 (348)
T ss_dssp CEEEEEEEEEEEETTEEEECTHHHHHHHSSHHHHHHHT--TE----EEEEEEECTTCHH----------------HHHHH
T ss_pred CceEEEEeeccCCCCccccCcHHHHHHHccHHHHHHhc--CC----eEEEEecccCCCc----------------HHHHH
Confidence 4679999873 232355544455666654 23 4666555544421 35668
Q ss_pred HHHcCCCcEEEeeCCCCCC----CCCCCceeeeecCCCCCcceeeccC---ccCcccCCCCCEEecC--ChHH---HHHH
Q 020472 135 ALINSQIDIAVHSMKDVPT----YLPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTA--SLRR---KSQI 202 (326)
Q Consensus 135 ALl~g~iDiAVHSlKDlPt----~lp~gL~iaAv~kReDprD~LV~~~---~~~l~dLp~ga~IGTS--S~RR---~aQL 202 (326)
+|.+|++|+++-+. .|. .--..+.+.+..-..++ ..+++++ .++++|| +|.+||++ |.-- ...+
T Consensus 63 al~~G~~D~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~-~~lvv~~~s~i~s~~DL-kGk~I~v~~gs~~~~~~~~~l 138 (348)
T 3uif_A 63 GFASGKIDFGIYGD--LPPIILNASKPTVQLVAPWGTTSN-SYLVVPKNSTAKSIKDL-KGKKIALHRGRPWELAFSNLL 138 (348)
T ss_dssp HHHTTCCCEEEEES--HHHHHHHHHSCCEEEEEECCCCCC-CEEEEETTCCCCSGGGG-TTSEEEECTTSTHHHHHHHHH
T ss_pred HHHcCCCCEEecCc--HHHHHHHhCCCCEEEEEeccCCCc-eEEEEECCCCCCCHHHc-CCCEEEecCCChHHHHHHHHH
Confidence 99999999999442 221 11123444433333333 3455543 3578888 58899874 2211 1122
Q ss_pred HhhC---CCCEEEeccCCCHHHHHhhhccCCccEEeeehhh
Q 020472 203 LHRY---PSLKVMENFRGNVQTRLRKLNERVVQATLLALAG 240 (326)
Q Consensus 203 ~~~~---Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AG 240 (326)
+..- .+++++ ++ +....+.-|.+|+.||++.....
T Consensus 139 ~~~Gl~~~~v~~v-~~--~~~~~~~al~~G~vDa~~~~~~~ 176 (348)
T 3uif_A 139 QSEGLTFKDFKIV-NV--NPQVGAAALASGTVDGFFSLFDS 176 (348)
T ss_dssp HHTTCCGGGSEEE-CC--CHHHHHHHHHHTSSSEEEESTTH
T ss_pred HHcCCCHHHeEEE-EC--CHHHHHHHHHcCCCCEEEechHH
Confidence 2221 247777 66 56788999999999999886543
No 8
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=96.33 E-value=0.01 Score=48.71 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc----cCcccCCCCCEEecCChH-HHHHHHh
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELPAGSIVGTASLR-RKSQILH 204 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~----~~l~dLp~ga~IGTSS~R-R~aQL~~ 204 (326)
.++.++|.+|++|+++-++-.-| +..+.+.... +=-....+++.++. .+++|| .|.+||+..-- -...+..
T Consensus 51 ~~~~~~l~~g~~D~~~~~~~~~~-~r~~~~~~s~--p~~~~~~~l~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~ 126 (227)
T 3tql_A 51 DSLIPSLKLGKFDALFGGMNITT-ARQKEVDFTD--PYYTNSVSFIADKNTPLTLSKQGL-KGKIIGVQGGTTFDSYLQD 126 (227)
T ss_dssp HHHHHHHHHTSCSEECSSCBCCT-TGGGTEEECS--CSBCCEEEEEEETTSCCCCSTTTT-TTCEEEEETTSHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEecCcCCH-hHHhheeccc--ceeccceEEEEeCCCCCCCCHHHh-CCCEEEEEecccHHHHHHH
Confidence 35778999999999875432111 1222222211 11122345665433 467777 47788774322 2456666
Q ss_pred hCCC-CEEEeccCCCHHHHHhhhccCCccEEeeehhhhcc----cCCCccceeeecCCCCCCCcccceeeeEeecCchhH
Q 020472 205 RYPS-LKVMENFRGNVQTRLRKLNERVVQATLLALAGLKR----LSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 279 (326)
Q Consensus 205 ~~Pd-l~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~R----Lgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~ 279 (326)
.+|+ .+++ .. .|.+.-++.|.+|++||++....-+.. .+.. .+ .++.+....+..-..-+++.++++++++
T Consensus 127 ~~~~~~~~~-~~-~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (227)
T 3tql_A 127 SFGNSITIQ-RY-PSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRR-EY-VLIGKPVNDPNYFGKGVGIAVKKGNQAL 202 (227)
T ss_dssp HHGGGSEEE-EE-SSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCC-SE-EEEEEECCCGGGCCSCBCCEEETTCHHH
T ss_pred hccccceEE-Ec-CCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCC-CE-EEecCcccCccccccceEEEEcCCCHHH
Confidence 7777 8887 44 588999999999999999987654433 2221 12 1111111111111223567788888876
Q ss_pred Hhhhh
Q 020472 280 VPFTT 284 (326)
Q Consensus 280 ~~lL~ 284 (326)
.+.++
T Consensus 203 ~~~l~ 207 (227)
T 3tql_A 203 LLKLN 207 (227)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 9
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=96.15 E-value=0.037 Score=50.22 Aligned_cols=180 Identities=13% Similarity=0.143 Sum_probs=97.4
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
.++|+||.-+++-+. .-..+...+++. ++ ++|++.+.. - -+..+||.+|++|+.
T Consensus 2 ~~~i~vG~~~~~~~~-~~~~~~~~~~~~--Gl----~ve~~~f~d---~----------------~~~n~AL~~G~iD~n 55 (241)
T 1xs5_A 2 DETVGVGVLSEPHAR-LLEIAKEEVKKQ--HI----ELRIVEFTN---Y----------------VALNEAVMRGDILMN 55 (241)
T ss_dssp CEEEEEEECSTTHHH-HHHHHHHHHHTT--TE----EEEEEECSC---H----------------HHHHHHHHHTSSSEE
T ss_pred CceEEEEecCCCcHH-HHHHHHHHHHHc--CC----eEEEEEcCC---h----------------HHHHHHHHcCCCCEe
Confidence 357999999998662 223455666653 23 466665532 1 256799999999998
Q ss_pred E--eeCCCCCCC--C--CCCceeeeec--CCCCCcceeeccCccCcccCCCCCEEecCC----hHHHHHHHhhC------
Q 020472 145 V--HSMKDVPTY--L--PEKTILPCNL--QREDVRDAFISLSAASLAELPAGSIVGTAS----LRRKSQILHRY------ 206 (326)
Q Consensus 145 V--HSlKDlPt~--l--p~gL~iaAv~--kReDprD~LV~~~~~~l~dLp~ga~IGTSS----~RR~aQL~~~~------ 206 (326)
. |. |.. . ..|..+.++. ..+ | ..+.+.+.++++|||+|.+|+.+. -=|.-.++...
T Consensus 56 ~fq~~----~~l~~~~~~~g~~l~~v~~~~~~-p-~g~ys~kiksl~dL~~G~~Iaip~d~sn~~ral~lL~~aGli~l~ 129 (241)
T 1xs5_A 56 FFQHV----PHMQQFNQEHNGDLVSVGNVHVE-P-LALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMR 129 (241)
T ss_dssp EEEEH----HHHHHHHHHHTCCEEEEEEEEEC-C-CEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEEC
T ss_pred ccCCH----HHHHHHHHHCCCCEEEEEeeccc-c-ceeecCCCCChHHcCCCCEEEEeCCCchHHHHHHHHHHCCCEEec
Confidence 5 32 210 0 1243333332 222 2 345567788999999999999644 23444444321
Q ss_pred ----------------CCCEEEeccCC-CHHHHHhhhccCCccEEeeehhhhcccCCCcc-ceeeecCCCCCCCccccee
Q 020472 207 ----------------PSLKVMENFRG-NVQTRLRKLNERVVQATLLALAGLKRLSMTEN-VTNILSVDDMLPAVAQGAI 268 (326)
Q Consensus 207 ----------------Pdl~v~~~iRG-NV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~-i~~~L~~~~~lPA~GQGaL 268 (326)
.+++++ ++-. .+..- | ++.||.++..-=...-|+... -.-+++... .| -+.
T Consensus 130 ~~~~~~~t~~dI~~np~~v~~~-~l~~~~~~~a---l--~~VDaa~i~~~~a~~agl~~~~~~l~~e~~~-~~----~~n 198 (241)
T 1xs5_A 130 AGSGLFATVEDVQQNVRNVVLQ-EVESALLPRV---F--DQVDGAVINGNYAIMAGLSARRDGLAVEPDA-SA----YAN 198 (241)
T ss_dssp TTCCTTCCGGGEEECTTCCEEE-EECGGGHHHH---G--GGSSEEEECHHHHHHTTCCTTTTCSEECSCG-GG----GCE
T ss_pred CCCCCccChhhhhcCCCceEEE-EeCHHHHHHh---h--hccCEEEECcHHHHHcCCCcccceEEEcCCC-Cc----eEE
Confidence 256777 4432 33322 3 479999885432333444321 011122211 12 233
Q ss_pred eeEeecC---chhHHhhhhccc
Q 020472 269 GIACRSN---DEKMVPFTTHSQ 287 (326)
Q Consensus 269 AVe~R~d---D~~~~~lL~~~~ 287 (326)
.+.+|++ ++.+..+++.++
T Consensus 199 viv~r~~~~~~~~vk~l~~a~~ 220 (241)
T 1xs5_A 199 VLVVKRGNEADARVQAVLRALC 220 (241)
T ss_dssp EEEEETTCTTCHHHHHHHHHHT
T ss_pred EEEEECCccChHHHHHHHHHHC
Confidence 4456654 345666666655
No 10
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=96.14 E-value=0.011 Score=49.62 Aligned_cols=148 Identities=11% Similarity=0.086 Sum_probs=82.8
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc---cCcccCCCCCEEecCChHHHHHHHhhCC
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRRKSQILHRYP 207 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~---~~l~dLp~ga~IGTSS~RR~aQL~~~~P 207 (326)
++.++|.+|++|+++.++-.-|. ....+....+. ......+++.+++ .+++|| .|.+||+..---.......+|
T Consensus 61 ~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~p~~-~~~~~~~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~~ 137 (242)
T 3del_B 61 ALILNLKQHRIDAVITGMSITPS-RLKEILMIPYY-GEEIKHLVLVFKGENKHPLPLT-QYRSVAVQTGTYQEAYLQSLS 137 (242)
T ss_dssp GHHHHHHTTSSSEECSSBBCCHH-HHTTEEEEEEE-EEEESEEEEEEESCCSCCCCGG-GSSCEEEETTSHHHHHHHHST
T ss_pred HHHHHHhCCCcCEEEecCcCCHH-HHhcccceeee-ecCCceEEEEeCCCCCCCHHHh-CCCEEEEEcCcHHHHHHHhCC
Confidence 46689999999999854433221 11222221111 0022235555432 456777 477777644333333334489
Q ss_pred CCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHhhhh
Q 020472 208 SLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 284 (326)
Q Consensus 208 dl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL~ 284 (326)
+.+++ .. .|.+.-++.|.+|++||++....-+..+--......++.. .+.+.+-.--+++.++++++++.+.++
T Consensus 138 ~~~~~-~~-~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~l~~~l~ 211 (242)
T 3del_B 138 EVHIR-SF-DSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATI-DLPEDQWVLGYGIGVASDRPALALKIE 211 (242)
T ss_dssp TCCEE-EE-SSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEE-ECCGGGCEEEEEEEEETTCHHHHHHHH
T ss_pred CceEE-EE-CCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecC-ccCcccccceEEEEEeCCCHHHHHHHH
Confidence 99998 55 4899999999999999999976655444211111122221 111111001167888888887766554
No 11
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=95.62 E-value=0.12 Score=42.57 Aligned_cols=147 Identities=12% Similarity=0.198 Sum_probs=82.5
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCC-cceeeccCc--cCcccCCCCCEEecCChH-HHHHHHhhC
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDV-RDAFISLSA--ASLAELPAGSIVGTASLR-RKSQILHRY 206 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDp-rD~LV~~~~--~~l~dLp~ga~IGTSS~R-R~aQL~~~~ 206 (326)
++.++|.+|++|+++.++-.-|. ..+.+.... +=-.. ..+++.+++ .+++|| .|.+||+..-- -...++..+
T Consensus 56 ~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~~~ 131 (229)
T 2y7i_A 56 SLIPSLRFKKFDAVIAGMDMTPK-REQQVSFSQ--PYYEGLSAVVVTRKGAYHTFADL-KGKKVGLENGTTHQRYLQDKQ 131 (229)
T ss_dssp GHHHHHHTTSCSEECSSCBCCHH-HHTTSEECS--CSBCCCCEEEEEETTSCCSTGGG-TTCEEEEETTSHHHHHHHHHC
T ss_pred HHHHHHhCCCceEEEecCccCHH-Hhcceeecc--ccccCCcEEEEEeCCCCCCHHHH-CCCEEEEecCCcHHHHHHHhC
Confidence 46788999999999854321111 112222211 11111 345555432 467777 58888864322 244566678
Q ss_pred CCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCC-ccceeeecCCCCCCCcccceeeeEeecCchhHHhhhh
Q 020472 207 PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT-ENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 284 (326)
Q Consensus 207 Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~-~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL~ 284 (326)
|+.+++ .. .|.++-++.|.+|++||++....-+..+--. ..+ .++++...-|..-..-+++.++++++++.+.++
T Consensus 132 ~~~~~~-~~-~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 207 (229)
T 2y7i_A 132 QAITPV-AY-DSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDY-AIMDERASDPDYYGKGLGIAVRKDNDALLQEIN 207 (229)
T ss_dssp TTSEEE-EE-SCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTE-EECSCCBCCTTTSCCCBCCEECTTCHHHHHHHH
T ss_pred CCCeEE-ec-CCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCe-EEeccccccccccccceEEEEeCCCHHHHHHHH
Confidence 999988 55 4889999999999999999976654332111 122 223221101111112456677888776655554
No 12
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=95.54 E-value=0.026 Score=47.68 Aligned_cols=142 Identities=10% Similarity=0.076 Sum_probs=83.2
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc-----cCcccCCC-CCEEecCChHH-HHHHH
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-----ASLAELPA-GSIVGTASLRR-KSQIL 203 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~-----~~l~dLp~-ga~IGTSS~RR-~aQL~ 203 (326)
++-++|.+|++|+++-++-.-|. ..+.+.... +=-....+++.++. .+++||.. |.+||+..--- ...+.
T Consensus 55 ~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL~~~g~~i~v~~g~~~~~~l~ 131 (245)
T 3k4u_A 55 GLIPGLVTEKFDIIISGMTISQE-RNLRVNFVE--PYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAK 131 (245)
T ss_dssp GHHHHHHTTSCSEECSSCBCCHH-HHTTSEECS--CSEEECEEEEEETTTTTTCCSGGGGCCSSCEEEEETTSHHHHHHH
T ss_pred HHHHHHhCCCcCEEEecCcCCHH-HHhhcCcch--hhheeceEEEEECCcccccCCHHHhccCCcEEEEeCCcHHHHHHH
Confidence 56789999999998765432221 111121111 11111234444332 46778853 77887643332 44566
Q ss_pred hhCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhh----cccCCCccceeeecCCCCCCCcccceeeeEeecCchhH
Q 020472 204 HRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 279 (326)
Q Consensus 204 ~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL----~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~ 279 (326)
..+|+.+++ ... |.+.-++.|.+|++||++....-+ .+.+ ...+ ..+.. . ...--+++-++++++++
T Consensus 132 ~~~~~~~~~-~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~-~~~~-~~~~~-~----~~~~~~~~~~~k~~~~l 202 (245)
T 3k4u_A 132 RLFKNAKLK-TYD-TEAEAVQEVLNGKADMFIFDLPFNVAFMAQKG-QGYL-VHLDT-S----LTYEPLGWAIKKGDPDF 202 (245)
T ss_dssp HHCSSSEEE-EES-SHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTT-TTTE-EEECC-C----CSCEEECCEECTTCHHH
T ss_pred hhCCcCCEE-EeC-CHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCC-ccce-eecCC-C----cccccEEEEEcCCCHHH
Confidence 679999998 554 789999999999999999976443 3333 1122 12221 1 12334677888888866
Q ss_pred Hhhhh
Q 020472 280 VPFTT 284 (326)
Q Consensus 280 ~~lL~ 284 (326)
.+.++
T Consensus 203 ~~~ln 207 (245)
T 3k4u_A 203 LNWLN 207 (245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 13
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=95.35 E-value=0.031 Score=49.34 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=79.4
Q ss_pred HHHHHHHcCCCcEEEeeCCC-CCCCCCCCceeeeecCCCCCcceeeccC---ccCcccCCCCCEEecCChHHHHHHHhhC
Q 020472 131 EIDEALINSQIDIAVHSMKD-VPTYLPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTASLRRKSQILHRY 206 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKD-lPt~lp~gL~iaAv~kReDprD~LV~~~---~~~l~dLp~ga~IGTSS~RR~aQL~~~~ 206 (326)
++.++|.+|++|+++-++-. -| +....+.+.. +=.....++++++ .++++|| +|.+||+..---...+...+
T Consensus 107 ~~~~~l~~G~~D~~~~~~~~~t~-~r~~~~~~~~--p~~~~~~~l~~~~~~~i~s~~dL-~G~~v~v~~g~~~~~~l~~~ 182 (283)
T 2yln_A 107 SMMAGLKAGRFDVVANQVGLTSP-ERQATFDKSE--PYSWSGAVLVAHNDSNIKSIADI-KGVKTAQSLTSNYGEKAKAA 182 (283)
T ss_dssp GHHHHHHHTSCSEECSSCCCCSH-HHHHHEEECS--CSEEECEEEEEETTCSCCSGGGC-TTSEEEECTTSHHHHHHHHT
T ss_pred HHHHHHHCCCcCEEEecCccCCh-hhhcceEecc--CeeeecEEEEEECCCCCCCHHHh-CCCEEEEecCchHHHHHHHc
Confidence 46789999999999855432 11 1111122111 1111123455544 3578899 79999875433333333333
Q ss_pred CCCEEEeccCCCHHHHHhhhccCCccEEeeehhhh----cccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHhh
Q 020472 207 PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPF 282 (326)
Q Consensus 207 Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL----~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~l 282 (326)
+++++ .. .+...-++.|.+|++||++....-+ ++.+.. .+ .+++...+-+ ..-+++.++++++++.+.
T Consensus 183 -~~~~~-~~-~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~-~l-~~~~~~~~~~---~~~~~i~~~k~~~~l~~~ 254 (283)
T 2yln_A 183 -GAQLV-PV-DGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNA-GV-KIVWSAPADE---KVGSGLIVNKGNDEAVAK 254 (283)
T ss_dssp -TCEEE-EC-SSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTS-SE-EEEEECCGGG---CEEECCEEESSCHHHHHH
T ss_pred -CCeEE-Ee-CCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCC-cE-EEccCcccCC---cccEEEEEeCCCHHHHHH
Confidence 67777 44 4789999999999999999865433 333322 11 2222011110 234677888888766555
Q ss_pred hh
Q 020472 283 TT 284 (326)
Q Consensus 283 L~ 284 (326)
++
T Consensus 255 i~ 256 (283)
T 2yln_A 255 FS 256 (283)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 14
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=95.24 E-value=0.087 Score=43.09 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=81.6
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC----ccCcccCCCCCEEecCChH-HHHHHHhh
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS----AASLAELPAGSIVGTASLR-RKSQILHR 205 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~----~~~l~dLp~ga~IGTSS~R-R~aQL~~~ 205 (326)
++.++|.+|++|+++.++-.-|. ..+.+.... +=-....+++.++ ..+++|| .|.+||+..-- -...+...
T Consensus 52 ~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~~--p~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~ 127 (226)
T 1wdn_A 52 GIIPALQTKNVDLALAGITITDE-RKKAIDFSD--GYYKSGLLVMVKANNNDVKSVKDL-DGKVVAVKSGTGSVDYAKAN 127 (226)
T ss_dssp GHHHHHHTTSSSEEEEEEECCHH-HHTTSEECS--CCEEEEEEEEEETTCCSCSSSTTT-TTCEEEEETTSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEcCcCCHH-HhCcccccc--chhcCceEEEEeCCCCCCCCHHHh-CCCEEEEEcCCcHHHHHHHh
Confidence 57789999999999865432221 112222210 0001123444432 2357777 57788863222 23456666
Q ss_pred CCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcc----cCCCccceeeecCCCCCCCcccceeeeEeecCchhHHh
Q 020472 206 YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKR----LSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVP 281 (326)
Q Consensus 206 ~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~R----Lgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~ 281 (326)
+|+.+++ .. .+.++-++.|.+|++|+++....-+.. .+. ..+ .++++ .....-+++.++++++++.+
T Consensus 128 ~~~~~~~-~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-~~l-~~~~~-----~~~~~~~~~~~~k~~~~l~~ 198 (226)
T 1wdn_A 128 IKTKDLR-QF-PNIDNAYMELGTNRADAVLHDTPNILYFIKTAGN-GQF-KAVGD-----SLEAQQYGIAFPKGSDELRD 198 (226)
T ss_dssp CCCSEEE-EE-SSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTT-TTE-EEEEE-----EEEEEEEEEEECTTCHHHHH
T ss_pred CCCceEE-Ee-CCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCC-Cce-EEecC-----CcccCceEEEEeCCCHHHHH
Confidence 8999887 44 488999999999999999987654433 222 122 12211 12234577888888766655
Q ss_pred hhh
Q 020472 282 FTT 284 (326)
Q Consensus 282 lL~ 284 (326)
.++
T Consensus 199 ~~~ 201 (226)
T 1wdn_A 199 KVN 201 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 15
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=95.08 E-value=0.022 Score=47.73 Aligned_cols=145 Identities=8% Similarity=0.033 Sum_probs=81.7
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC-----ccCcccCC-CCCEEecCC-hHHHHHHH
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-----AASLAELP-AGSIVGTAS-LRRKSQIL 203 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~-----~~~l~dLp-~ga~IGTSS-~RR~aQL~ 203 (326)
++.++|.+|++|+++-++-.-|. ..+.+.... +=-....+++.++ ..+++||. +|.+||+-. .--...+.
T Consensus 65 ~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~fs~--p~~~~~~~~~~~~~~~~~i~~~~dL~~~g~~v~~~~g~~~~~~l~ 141 (239)
T 3kbr_A 65 NLMRDFADDRFDIAMSGISINLE-RQRQAYFSI--PYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFAR 141 (239)
T ss_dssp THHHHHHTTCCSEECSSCBCCHH-HHTTCEECS--CSEEECEEEEEEGGGGGGGSSHHHHSSTTCEEEECTTSHHHHHHH
T ss_pred HHHHHHHCCCcCEEEeCCcCCHH-HcCccccch--HHhccCcEEEEECCcccccCCHHHhcCCCcEEEEcCCCcHHHHHH
Confidence 46789999999999755432221 111111110 0001112344332 23567774 377888632 22345677
Q ss_pred hhCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHhhh
Q 020472 204 HRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFT 283 (326)
Q Consensus 204 ~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL 283 (326)
..+|+.+++ ... |.+.-++.|.+|++||++....-+..+-....-...+.+.. .....-+++.+++ ++++.+.+
T Consensus 142 ~~~~~~~~~-~~~-~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k-~~~l~~~l 215 (239)
T 3kbr_A 142 ANLKKARIL-VHP-DNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQ---PFDFAEKAYLLPR-DEAFKRYV 215 (239)
T ss_dssp HHCSSSEEE-ECC-CTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC----CCCCEEECCEECS-CHHHHHHH
T ss_pred HhCCCCceE-EeC-CHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCC---CccccceEEEEcC-CHHHHHHH
Confidence 779999998 554 78889999999999999987665433311111112222111 1224557778888 77766655
Q ss_pred h
Q 020472 284 T 284 (326)
Q Consensus 284 ~ 284 (326)
+
T Consensus 216 n 216 (239)
T 3kbr_A 216 D 216 (239)
T ss_dssp H
T ss_pred H
Confidence 4
No 16
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=95.03 E-value=0.28 Score=44.20 Aligned_cols=187 Identities=14% Similarity=0.093 Sum_probs=107.1
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEEE
Q 020472 66 AIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAV 145 (326)
Q Consensus 66 ~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiAV 145 (326)
.+|+||+-++.=..+.++.+...|++. ++ +++++. ..|+ +..+-+||.+|+||+++
T Consensus 6 ~~i~ig~~~~~~~~~~~~~~~~~le~~--G~----~Ve~~~--~~g~----------------~~~~~~al~~G~iD~~~ 61 (275)
T 1sw5_A 6 ERVVIGSKPFNEQYILANMIAILLEEN--GY----KAEVKE--GLGG----------------TLVNYEALKRNDIQLYV 61 (275)
T ss_dssp CCEEECCCSSHHHHHHHHHHHHHHHHT--TC----CEEECT--TCCS----------------HHHHHHHHHHTSSSEEE
T ss_pred CCEEEEcCCCcHHHHHHHHHHHHHHHc--CC----cEEEEe--CCCc----------------hHHHHHHHHcCCCcEEE
Confidence 469999988776666777777888765 22 354432 1222 13466899999999998
Q ss_pred e--------eCCCCCCC--------------CCC--CceeeeecCCCCCcceeecc-------CccCcccCCCC---CEE
Q 020472 146 H--------SMKDVPTY--------------LPE--KTILPCNLQREDVRDAFISL-------SAASLAELPAG---SIV 191 (326)
Q Consensus 146 H--------SlKDlPt~--------------lp~--gL~iaAv~kReDprD~LV~~-------~~~~l~dLp~g---a~I 191 (326)
- =++..|.. +++ ++.+.+... .+..+.|+.+ .-++++||..- .++
T Consensus 62 eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~l~V~~~~a~~~~i~si~DL~g~~~~~~~ 140 (275)
T 1sw5_A 62 EYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLG-FRDDYALAVRADWAEENGVEKISDLAEFADQLVF 140 (275)
T ss_dssp EEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEE-EECCEEEEEEHHHHHHHTCCBGGGGTTTGGGCEE
T ss_pred eehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCC-CCCeeEEEEeHHHHHHcCCCcHHHHHhhhcceEe
Confidence 3 24443331 111 677666553 2445667764 34678888543 378
Q ss_pred ecCCh--HHH----HHHHhhCCCC-EEEeccCCCHHHHHhhhccCCccEEeeehh--hhcccCCCccceeeecCCCCCCC
Q 020472 192 GTASL--RRK----SQILHRYPSL-KVMENFRGNVQTRLRKLNERVVQATLLALA--GLKRLSMTENVTNILSVDDMLPA 262 (326)
Q Consensus 192 GTSS~--RR~----aQL~~~~Pdl-~v~~~iRGNV~TRL~KL~~ge~DAIILA~A--GL~RLgl~~~i~~~L~~~~~lPA 262 (326)
|+++- -|. ..++.+-=+. +++ ++ ......+.|.+|+.|++..-.- .+...++ ...-++..+.|.
T Consensus 141 g~~~~~~~~~~g~~~~~~~yGl~~~~~~-~~--~~~~~~~Al~~g~vd~~~~~~p~~~~~~~~l----~~L~d~~~~~~~ 213 (275)
T 1sw5_A 141 GSDPEFASRPDGLPQIKKVYGFEFKEVK-QM--EPTLMYEAIKNKQVDVIPAYTTDSRVDLFNL----KILEDDKGALPP 213 (275)
T ss_dssp EECHHHHHSTTSHHHHHHHHTCCCSEEE-EC--CGGGHHHHHHTTSCSEEEEETTCHHHHHTTE----EECBCTTCCSCC
T ss_pred ccCcccccccchHHHHHHhcCCCccccc-CC--CHHHHHHHHHcCCCeEEEEeCCCcchhcCCe----EEccCCcccCCc
Confidence 87653 110 1222221122 455 55 3456788899999999987322 2333332 223345555554
Q ss_pred cccceeeeEeecCc---hhHHhhhhccc
Q 020472 263 VAQGAIGIACRSND---EKMVPFTTHSQ 287 (326)
Q Consensus 263 ~GQGaLAVe~R~dD---~~~~~lL~~~~ 287 (326)
. -+...+|.+- +++.++|+.+.
T Consensus 214 -~--~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 214 -Y--DAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp -C--EEEEEECTTGGGCHHHHHHHHTTT
T ss_pred -c--ceeeeeehhhccChHHHHHHHHHH
Confidence 2 2344566542 67778887775
No 17
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=94.99 E-value=0.093 Score=46.48 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=82.8
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
.++||||.-.+.....-+. ....+++.+|++ +++++...+ | .++.++|.+|++|++
T Consensus 2 ~~~lrig~~~~~~~~~~a~-~~g~~~~~~~g~----~v~~~~~~~-~------------------~~~~~~l~~G~~D~~ 57 (308)
T 2x26_A 2 PEALRIGYQKGSIGMVLAK-SHQLLEKRYPES----KISWVEFPA-G------------------PQMLEALNVGSIDLG 57 (308)
T ss_dssp CSEEEEEECTTCHHHHHHH-HTTHHHHHCTTS----EEEEEECSS-H------------------HHHHHHHHHTSCSEE
T ss_pred CeEEEEEccCCchHHHHHH-hcChHhHhcCCC----ceEEEECCC-c------------------HHHHHHHHCCCCCEE
Confidence 3579999977643233222 234567777766 466655422 1 257799999999999
Q ss_pred EeeCCCCCCCCCCC--ceeeeecCCCCCcceeeccCc---cCcccCCCCCEEecC--C-hHHH--HHHHhh--CC-CCEE
Q 020472 145 VHSMKDVPTYLPEK--TILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTA--S-LRRK--SQILHR--YP-SLKV 211 (326)
Q Consensus 145 VHSlKDlPt~lp~g--L~iaAv~kReDprD~LV~~~~---~~l~dLp~ga~IGTS--S-~RR~--aQL~~~--~P-dl~v 211 (326)
+-+.-..-.....| +.+.+.........+++.++. ++++|| .|-+||+. | .+.. ..++.. .| ++++
T Consensus 58 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~i~s~~dL-~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~ 136 (308)
T 2x26_A 58 STGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADL-KGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP 136 (308)
T ss_dssp EECSHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGG-TTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEE
T ss_pred cccCcHHHHHHhcCCCeEEEEEecCCCCceEEEEeCCCCCCCHHHc-CCCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEE
Confidence 86432100001123 333333322222445665432 467787 47788863 2 2221 122222 12 3555
Q ss_pred EeccCCCHHHHHhhhccCCccEEeeehhh
Q 020472 212 MENFRGNVQTRLRKLNERVVQATLLALAG 240 (326)
Q Consensus 212 ~~~iRGNV~TRL~KL~~ge~DAIILA~AG 240 (326)
+ .. +...-+..|.+|+.||.++...-
T Consensus 137 ~-~~--~~~~~~~al~~G~vDa~~~~~~~ 162 (308)
T 2x26_A 137 T-YL--TPADARAAFQQGNVDAWAIWDPY 162 (308)
T ss_dssp E-EC--CHHHHHHHHHTTSSSEEEEETTH
T ss_pred E-ec--ChHHHHHHHHcCCCCEEEecchh
Confidence 4 33 46788899999999999885443
No 18
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=94.94 E-value=0.12 Score=45.63 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=82.5
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC---ccCcccCCCCCEEecCChH-HHHHHHhhC
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTASLR-RKSQILHRY 206 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~---~~~l~dLp~ga~IGTSS~R-R~aQL~~~~ 206 (326)
++.++|.+|++|+++-++-.-|. ....+.+.. +=.....+++.++ .++++|| .|.+||+..-- =...+...+
T Consensus 108 ~~~~~l~~G~~D~~~~~~~~~~~-r~~~~~~~~--p~~~~~~~l~~~~~~~i~sl~dL-~gk~v~~~~g~~~~~~l~~~~ 183 (291)
T 2yjp_A 108 NRVEYVRSGKVDLILANFTQTPE-RAEAVDFAD--PYMKVALGVVSPKNKPITDMAQL-KDQTLLVNKGTTADAFFTKSH 183 (291)
T ss_dssp GHHHHHHTTSCSEECSSCBCCHH-HHTTEEECC--CCEEECEEEEEETTSCCCSGGGG-TTSEEEEETTSHHHHHHHHHC
T ss_pred HHHHHHhCCCeeEEEeCCCCChH-HHccceecc--CeeecceEEEEeCCCCCCCHHHh-CCCEEEEecCCcHHHHHHHhC
Confidence 47789999999999854321111 112222211 1111123455543 3567888 58888864221 134566678
Q ss_pred CCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCC-ccceeeecCCCCCCCcccceeeeEeecCchhHHhhhh
Q 020472 207 PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT-ENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 284 (326)
Q Consensus 207 Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~-~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL~ 284 (326)
|+.+++ .. .+.+.-++.|.+|++||++....-+..+-.. ..+ .+++. .+ ..+..+++.++++++++.+.++
T Consensus 184 ~~~~~~-~~-~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~-~~~~~-~~---~~~~~~~~~~~k~~~~l~~~l~ 255 (291)
T 2yjp_A 184 PEVKLL-KF-DQNTETFDALKDGRGVALAHDNALLWAWAKENPNF-EVAIG-NL---GPAEFIAPAVQKGNADLLNWVN 255 (291)
T ss_dssp TTSEEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTE-EEEEC-CS---SSCEEECCEEETTCHHHHHHHH
T ss_pred CCceEE-Ee-CCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCe-EEcCC-cc---cCCcceEEEEeCCCHHHHHHHH
Confidence 999988 55 4889999999999999999966544332111 111 22221 11 1122347788888886655554
No 19
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=94.85 E-value=0.12 Score=44.82 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=84.1
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc----cCcccCCCCCEEecCChH-HHHHHHh
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELPAGSIVGTASLR-RKSQILH 204 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~----~~l~dLp~ga~IGTSS~R-R~aQL~~ 204 (326)
.++.++|.+|++|++. ++-.-|. ....+.... +=-....+++.++. .+++|| .|.+||+..-- -...+..
T Consensus 82 ~~~~~~l~~G~~D~~~-~~~~t~~-r~~~~~fs~--p~~~~~~~l~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~ 156 (267)
T 3mpk_A 82 EELIAKLRSGEADMAG-ALFVNSA-RESFLSFSR--PYVRNGMVIVTRQDPDAPVDADHL-DGRTVALVRNSAAIPLLQR 156 (267)
T ss_dssp HHHHHHHHHTSCSEEE-EEECCGG-GTTTEEECS--CSEEECEEEEEESSTTSCSSGGGC-TTCEEEEETTCTHHHHHHH
T ss_pred HHHHHHHHCCCccEEe-cccCChh-hhcceEech--hhccCceEEEEECCCCCCCCHHHH-CCCEEEEeCCchhHHHHHH
Confidence 4677899999999976 3322221 122222211 00111234444332 356777 47788764322 2345777
Q ss_pred hCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhccc---CCCccceeeecCCCCCCCcccceeeeEeecCchhHHh
Q 020472 205 RYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRL---SMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVP 281 (326)
Q Consensus 205 ~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RL---gl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~ 281 (326)
.+|+.+++ .. .|.++-++.|.+|++||+|.-..-+..+ ...+.+ .+..+ ++. ...-+++.++++++++.+
T Consensus 157 ~~~~~~~~-~~-~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l-~~~~~---~~~-~~~~~~~~~~k~~~~l~~ 229 (267)
T 3mpk_A 157 RYPQAKVV-TA-DNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKL-RIASA---LDL-PPAEIALATTRGQTELMS 229 (267)
T ss_dssp HCTTSEEE-EE-SSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTE-EEEEE---CSS-CCEEEEEEEETTCHHHHH
T ss_pred hCCCcEEE-Ee-CCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCce-EEEec---cCC-CceeEEEEEcCCCHHHHH
Confidence 89999998 55 5899999999999999999976544322 111112 11111 111 235677888999887766
Q ss_pred hhh
Q 020472 282 FTT 284 (326)
Q Consensus 282 lL~ 284 (326)
.++
T Consensus 230 ~ln 232 (267)
T 3mpk_A 230 ILN 232 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 20
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=94.24 E-value=0.099 Score=48.65 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=76.1
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
.++|+||.- ++-+. ....+...+++. ++ ++|++.+..-. +..+||.+|++|++
T Consensus 38 ~~~i~IG~~-~~~~~-~~~~~~~~~~~~--G~----~Ve~~~f~~~~-------------------~~~~AL~~G~iD~~ 90 (295)
T 1p99_A 38 DKKVTIGVA-SNDTK-AWEKVKELAKKD--DI----DVEIKHFSDYN-------------------LPNKALNDGDIDMN 90 (295)
T ss_dssp --CEEEEES-SSCCH-HHHHHHHHHGGG--TC----CEEEEECSSTT-------------------SHHHHHHTTSSSEE
T ss_pred CCeEEEEEe-CCcHH-HHHHHHHHHHHc--CC----eEEEEEeCChH-------------------HHHHHHHcCCCCEE
Confidence 356999987 65542 123355566654 23 57777664311 35689999999998
Q ss_pred E--eeCCCCCCC--C--CC-Cc--eeeeecCCCCCcceeeccCccCcccCCCCCEEecC----ChHHHHHHHhh------
Q 020472 145 V--HSMKDVPTY--L--PE-KT--ILPCNLQREDVRDAFISLSAASLAELPAGSIVGTA----SLRRKSQILHR------ 205 (326)
Q Consensus 145 V--HSlKDlPt~--l--p~-gL--~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTS----S~RR~aQL~~~------ 205 (326)
. |. |.. . .. |. .+++..-.+ | ..+.+.+.++++|||+|.+|+.. .-=|.-+++..
T Consensus 91 ~~~~~----~~l~~~~~~~~g~~l~~v~~~~~~-p-~g~ys~~iksl~DL~~Gk~IAip~~~s~~~~~l~lL~~~Gli~l 164 (295)
T 1p99_A 91 AFQHF----AFLDQYKKAHKGTKISALSTTVLA-P-LGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKL 164 (295)
T ss_dssp EEEEH----HHHHHHHHHCTTCCEEEEEEEEEC-C-CEEECSSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEE
T ss_pred ccCCH----HHHHHHHHhcCCCCEEEEEeeccc-c-ceeecCCCCChHHcCCCCEEEecCCCcHHHHHHHHHHHCCCccc
Confidence 7 32 110 0 11 33 333322222 2 35566778899999999999653 44444444431
Q ss_pred ---------------C-CCCEEEeccCCCHHHHHhhhccCCccEEeeeh
Q 020472 206 ---------------Y-PSLKVMENFRGNVQTRLRKLNERVVQATLLAL 238 (326)
Q Consensus 206 ---------------~-Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~ 238 (326)
+ .+++++ ++-..-- .+-| ++.||+++..
T Consensus 165 ~~~~~~~~t~~dI~~np~~v~~v-~~~~~~~--~~al--~~VDaa~i~~ 208 (295)
T 1p99_A 165 KKDFGLAGTVKDITSNPKHLKIT-AVDAQQT--ARAL--SDVDIAVINN 208 (295)
T ss_dssp CTTCCTTCCGGGEEECTTCCEEE-EECGGGT--TGGG--GTSSEEEECH
T ss_pred cCCCCCcCChhhhhcCCCceEEE-EcCHHHH--HHHh--hcCCEEEECc
Confidence 1 256777 5543211 1223 5799998843
No 21
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=94.18 E-value=0.15 Score=43.56 Aligned_cols=145 Identities=12% Similarity=0.134 Sum_probs=77.5
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC----ccCcccCCCCCEEecCC-hHHHHHHHhh
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS----AASLAELPAGSIVGTAS-LRRKSQILHR 205 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~----~~~l~dLp~ga~IGTSS-~RR~aQL~~~ 205 (326)
++-.+|.+|++|+++.++-.-|.- .+.+... .+--..+.-+++.++ ..++.+| .|.+||+.. .--...+...
T Consensus 65 ~~~~~l~~g~~d~~~~~~~~t~eR-~~~~~fs-~py~~~~~~~~v~~~~~~~~~~~~dl-~g~~i~v~~g~~~~~~l~~~ 141 (243)
T 4h5g_A 65 NVLTSLQTGKADLAVAGISATDER-KEVFDFS-IPYYENKISFLVHKADVEKYKDLTSL-ESANIAAQKGTVPESMVKEQ 141 (243)
T ss_dssp GHHHHHHTTSCSEECSSCBCCHHH-HTTEEEC-SCSBCCCEEEEEEGGGTTTCCSHHHH-HTSEEEEETTSHHHHHHHHH
T ss_pred HHHHHHHcCCCCcccccccCChhH-ccEEEcc-CccccCcccccccccccccccccccC-CCCEEEecCCcHHHHHHHHh
Confidence 456789999999998766432210 1111110 000111111222221 1234555 466776543 2335667888
Q ss_pred CCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcc-cCCCcccee-eecCCCCCCCcccceeeeEeecCchhHHhhh
Q 020472 206 YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKR-LSMTENVTN-ILSVDDMLPAVAQGAIGIACRSNDEKMVPFT 283 (326)
Q Consensus 206 ~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~R-Lgl~~~i~~-~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL 283 (326)
+|+.+++ ... |.++-++.|.+|++|+++.-..-+.. +........ ..... +..++ -+++-+|++|+++.+.+
T Consensus 142 ~~~~~i~-~~~-~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~a~~k~~~~L~~~~ 215 (243)
T 4h5g_A 142 LPKAQLT-SLT-NMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLK---MKDGD-ANAVALRKNSDDLKEVV 215 (243)
T ss_dssp CTTSEEE-EES-CHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCC---CCSSC-CBCCEEESSCHHHHHHH
T ss_pred cccceeE-EeC-CHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCC---cccCc-eEEEEEeCCCHHHHHHH
Confidence 9999998 655 88999999999999999985543221 111111100 11111 11111 25677799998776655
Q ss_pred h
Q 020472 284 T 284 (326)
Q Consensus 284 ~ 284 (326)
+
T Consensus 216 n 216 (243)
T 4h5g_A 216 D 216 (243)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=94.16 E-value=0.18 Score=42.56 Aligned_cols=147 Identities=10% Similarity=0.110 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC-----ccCcccCCCCCEEecCChHH-HHHHH
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-----AASLAELPAGSIVGTASLRR-KSQIL 203 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~-----~~~l~dLp~ga~IGTSS~RR-~aQL~ 203 (326)
.++.++|.+|++|+++-.+-.-|. ..+.+.... +=-....+++.++ ..+++|| .|.+||+..--- ...+.
T Consensus 91 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~ 166 (269)
T 4i62_A 91 DNVLASVQSGKADLAISGVSKTDE-RSKVFDFST--PYYTAKNKLIVKKSDLATYQSVNDL-AQKKVGAQKGSIQETMAK 166 (269)
T ss_dssp HHHHHHHHTTSCSEECSSCBCCHH-HHTTEEECS--CCEECCEEEEEEGGGTTTCSSGGGG-C-CEEEEETTSHHHHHHH
T ss_pred HHHHHHHhCCCccEEecCCcCCHh-Hhhceeccc--chhhcceEEEEECCccccccCHHHh-CCCeEEEecCchHHHHHH
Confidence 357789999999998754322211 111222111 0111122344432 2467777 578888643322 45567
Q ss_pred hhCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHhhh
Q 020472 204 HRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFT 283 (326)
Q Consensus 204 ~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL 283 (326)
..+|+.+++ .. .+.++-++.|.+|++||++....-+..+-.+..-...... .+ +....--+++.++++++++.+.+
T Consensus 167 ~~~~~~~~~-~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~l 242 (269)
T 4i62_A 167 DLLQNSSLV-SL-PKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADL-NF-EKEQDDSYAVAMKKDSKELKEAV 242 (269)
T ss_dssp HHCTTSEEE-EE-SCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSC-CC-CC-CCCEECCEEESSCHHHHHHH
T ss_pred HhCCCCcEE-ec-CCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEee-cc-CCCcccceEEEEeCCCHHHHHHH
Confidence 778999988 54 4899999999999999999876554332111111111111 11 11112345777888887665555
Q ss_pred h
Q 020472 284 T 284 (326)
Q Consensus 284 ~ 284 (326)
+
T Consensus 243 ~ 243 (269)
T 4i62_A 243 D 243 (269)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=94.15 E-value=0.22 Score=41.52 Aligned_cols=144 Identities=9% Similarity=0.137 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC----ccCcccCCCCCEEecCChH----HHHH
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS----AASLAELPAGSIVGTASLR----RKSQ 201 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~----~~~l~dLp~ga~IGTSS~R----R~aQ 201 (326)
.++.++|.+|++|+++-++-.-|. ..+.+... . +=-....+++.++ ..+++|| .|.+||+-.-- --.+
T Consensus 57 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~s-~-p~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~ 132 (246)
T 4eq9_A 57 SGVFAGLDADRYNMAVNNLSYTKE-RAEKYLYA-A-PIAQNPNVLVVKKDDSSIKSLDDI-GGKSTEVVQATTSAKQLEA 132 (246)
T ss_dssp HHHHHHHHTTSCSEECSSCCCCHH-HHHHEEEC-C-CCEECCEEEEEETTCCSCSSGGGC-TTCEEEECTTCHHHHHHHH
T ss_pred HHHHHHHhCCCcCEEecccccChh-hhhceeec-c-ceecCceEEEEECCCCCCCCHHHh-CCCEEEEecCccHHHHHHH
Confidence 457789999999998744221111 01111111 0 0001123444433 2457777 47788764322 2223
Q ss_pred HHhhCCC--CEEEeccCCCHHHHHhhhccCCccEEeeehhhhc----ccCCCccceeeecCCCCCCCcccceeeeEeecC
Q 020472 202 ILHRYPS--LKVMENFRGNVQTRLRKLNERVVQATLLALAGLK----RLSMTENVTNILSVDDMLPAVAQGAIGIACRSN 275 (326)
Q Consensus 202 L~~~~Pd--l~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~----RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~d 275 (326)
+...+|+ ++++ ....+.++-++.|.+|++||++....-+. +.+... + .+.... -.-+..+++.++++
T Consensus 133 ~~~~~~~~~~~~~-~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~-~-~~~~~~----~~~~~~~~~~~~k~ 205 (246)
T 4eq9_A 133 YNAEHTDNPTILN-YTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDN-L-KVIELP----SDQQPYVYPLLAQG 205 (246)
T ss_dssp HHHHCTTSCCEEE-ECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTT-E-EEEECC----CSSCCEECCEEETT
T ss_pred HHhhCCCcceEEE-ecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCC-c-eEecCc----CCCCCcEEEEEcCC
Confidence 3336885 4554 34469999999999999999999766543 333321 2 122211 11122456678888
Q ss_pred chhHHhhhh
Q 020472 276 DEKMVPFTT 284 (326)
Q Consensus 276 D~~~~~lL~ 284 (326)
++++.+.++
T Consensus 206 ~~~l~~~ln 214 (246)
T 4eq9_A 206 QDELKSFVD 214 (246)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 876665554
No 24
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=94.00 E-value=0.13 Score=43.39 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=80.2
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecCChHHHHHHHhhCCCCE
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 210 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTSS~RR~aQL~~~~Pdl~ 210 (326)
++-.+|.+|++|+++-++-.-|. ..+.+...... -....+++.++.. +.|| .| +||+..---.......+ +.+
T Consensus 55 ~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~fs~p~--~~~~~~~~~~~~~-~~dL-~g-~igv~~g~~~~~~l~~~-~~~ 127 (232)
T 3i6v_A 55 SIIPNLVSGNYDTIIAGMSITDE-RDEVIDFTQNY--IPPTASSYVATSD-GADL-SG-IVAAQTATIQAGYIAES-GAT 127 (232)
T ss_dssp GHHHHHHTTSCSEECSSCBCCHH-HHTTSEEEEEE--ECCCEEEEEESST-TCCT-TS-EEEEETTSHHHHHHHHS-SSE
T ss_pred HHHHHHHCCCCCEEEeCCcCCHH-HHhhcCccccc--ccCCeEEEEECCC-hHHh-CC-CEEEecCchHHHHHHhc-CCe
Confidence 46689999999998876533221 12222222111 1122455555433 7788 56 99875444333333333 788
Q ss_pred EEeccCCCHHHHHhhhccCCccEEeeehhhhc----ccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHhhhh
Q 020472 211 VMENFRGNVQTRLRKLNERVVQATLLALAGLK----RLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 284 (326)
Q Consensus 211 v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~----RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL~ 284 (326)
++ ... +.+.-++.|.+|++||++.-..-+. +.+....+ +.. |.....-+++-++++++++.+.++
T Consensus 128 ~~-~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~k~~~~l~~~ln 196 (232)
T 3i6v_A 128 LV-EFA-TPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMF---VGD----DVPLGGGVGMGLRESDGELRGKFD 196 (232)
T ss_dssp EE-EES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEE---EEE----EEECSSCEEEEECTTCHHHHHHHH
T ss_pred EE-EeC-CHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEE---ecC----CCCCCCcEEEEEeCCCHHHHHHHH
Confidence 87 554 8899999999999999998665443 33322111 111 111223466777888887766654
No 25
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=93.78 E-value=0.17 Score=41.69 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCC-CCCCceeeeecCCCCCcceeeccC-----ccCcccCCCCCEEecCChHHH-HHH
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTY-LPEKTILPCNLQREDVRDAFISLS-----AASLAELPAGSIVGTASLRRK-SQI 202 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~-lp~gL~iaAv~kReDprD~LV~~~-----~~~l~dLp~ga~IGTSS~RR~-aQL 202 (326)
.++.++|.+|++|+++-++-.-|.. .+..+.... +=-....+++.++ ..+++|| .|.+||+..---. ..+
T Consensus 55 ~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL-~g~~v~~~~g~~~~~~l 131 (233)
T 1ii5_A 55 SAGITAVAEGELDILIGPISVTPERAAIEGITFTQ--PYFSSGIGLLIPGTATPLFRSVGDL-KNKEVAVVRDTTAVDWA 131 (233)
T ss_dssp HHHHHHHHTTSCSEEEEEEECCHHHHTSTTEEECC--CCEEEEEEEEEEGGGTTTCSSGGGG-TTCEEEEETTSHHHHHH
T ss_pred HHHHHHHHCCCcCEEEeeeecCccccccceeEEcc--ceeecCeEEEEECCCCCCCCCHHHh-CCCeEEEECCccHHHHH
Confidence 4677899999999997643221111 012332210 0011123344432 2457777 5788886432222 233
Q ss_pred HhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhccc----CCCccceeeecCCCCCCCcccceeeeEeecCch
Q 020472 203 LHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRL----SMTENVTNILSVDDMLPAVAQGAIGIACRSNDE 277 (326)
Q Consensus 203 ~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RL----gl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~ 277 (326)
... +.+++ .. .|.++-++.|.+|+.||++....-+..+ +. ..+ .+++. .....-+++.++++++
T Consensus 132 ~~~--~~~~~-~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~k~~~ 199 (233)
T 1ii5_A 132 NFY--QADVR-ET-NNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPN-LNL-EVTEI-----RVSLEPYGFVLKENSP 199 (233)
T ss_dssp HHT--TCEEE-EE-SSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGG-GCE-EECSC-----CSEEEEEEEEEETTCT
T ss_pred HHc--CCCeE-Ec-CCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCC-CcE-EEeCc-----cccccceEEEEcCCch
Confidence 333 66776 44 5899999999999999999876654332 21 111 12221 1223456777788765
No 26
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=93.78 E-value=0.15 Score=44.93 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=63.5
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceeee--ecCCCCCcceeeccCccCcccCCCCCEEecCChH--HHHHHHhh
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPC--NLQREDVRDAFISLSAASLAELPAGSIVGTASLR--RKSQILHR 205 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaA--v~kReDprD~LV~~~~~~l~dLp~ga~IGTSS~R--R~aQL~~~ 205 (326)
.++.++|.+|++|+++-+.=-. .....|..+.+ ..-......++|.++. +|| +|-+||+++.- -...++..
T Consensus 48 ~~~~~~l~~G~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlv~~~~---~DL-kGK~Iav~~~~s~~~~ll~~~ 122 (280)
T 1zbm_A 48 ETLNRKAFNAEYEVTAISAHAY-ALLDDKYRILSAGASVGDGYGPVVVAKSE---ISL-DGKRIAVPGRYTTANLLLKLA 122 (280)
T ss_dssp HHHHHHGGGTCCSEEEEEHHHH-TTSTTTEEECSSCCEEESSCCCEEEESSC---CCC-TTCEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECHHHH-HHhcCCCcEEeeccccCCCeeEEEEEcCc---hhc-CCCEEEecCCCcHHHHHHHHH
Confidence 4677999999999998542111 12245666543 2222233456665542 777 68999985321 12335566
Q ss_pred CCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 206 YPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 206 ~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
..+.+++ .+. .+..+.-|.+|+.||.++.
T Consensus 123 l~~~~~~-~~~--~~~~~~al~~G~vDa~~~~ 151 (280)
T 1zbm_A 123 VEDFEPV-EMP--FDRIIQAVLDEEVDAGLLI 151 (280)
T ss_dssp CSSCEEE-ECC--GGGHHHHHHTTSSSEEEEC
T ss_pred hccCceE-ecC--HHHHHHHHHcCCCCEEEEe
Confidence 6777887 663 4678888999999998864
No 27
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=93.61 E-value=0.27 Score=41.14 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=75.9
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc---cCcccCCCCCEEecC---ChHHH-HH-H
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTA---SLRRK-SQ-I 202 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~---~~l~dLp~ga~IGTS---S~RR~-aQ-L 202 (326)
++.++|.+|++|+++-++-.-| +..+.+.... +=-.-..+++.+++ .+++|| .|.+||+. +.+.. .+ +
T Consensus 92 ~~~~~l~~g~~D~~~~~~~~~~-~~~~~~~~~~--p~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~~~~~~ 167 (259)
T 2v25_A 92 TRGPLLDNGSVDAVIATFTITP-ERKRIYNFSE--PYYQDAIGLLVLKEKKYKSLADM-KGANIGVAQAATTKKAIGEAA 167 (259)
T ss_dssp THHHHHHTTSCSEECSSCBCCH-HHHTTEEECS--CSEEEEEEEEEEGGGCCCSGGGC-TTCEEEEETTCSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEecCccCH-HHHhcCcccc--cceeCceEEEEeCCCCCCCHHHh-CCCEEEEecCCchHHHHHHHH
Confidence 3568899999999986532111 1122333321 10111224444332 467788 46777752 22221 11 1
Q ss_pred HhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHhh
Q 020472 203 LHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPF 282 (326)
Q Consensus 203 ~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~l 282 (326)
....-+.+++ .. .+.++-++.|.+|++|+++.....+..+--... .+++ . .....-+++.++++++++.+.
T Consensus 168 ~~~g~~~~~~-~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~~~~~k~~~~l~~~ 238 (259)
T 2v25_A 168 KKIGIDVKFS-EF-PDYPSIKAALDAKRVDAFSVDKSILLGYVDDKS--EILP-D----SFEPQSYGIVTKKDDPAFAKY 238 (259)
T ss_dssp HHTTCCCEEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTE--EECS-C----CCSEEEECCEEETTCHHHHHH
T ss_pred HhcCCceeEE-Ee-CCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCC--Cccc-c----ccccceeEEEEcCCCHHHHHH
Confidence 1222233666 44 488999999999999999997765544422211 1221 1 122345677888888766555
Q ss_pred hh
Q 020472 283 TT 284 (326)
Q Consensus 283 L~ 284 (326)
++
T Consensus 239 ~~ 240 (259)
T 2v25_A 239 VD 240 (259)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 28
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=93.31 E-value=0.11 Score=49.12 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=68.9
Q ss_pred cCCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCc
Q 020472 63 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQID 142 (326)
Q Consensus 63 ~~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iD 142 (326)
...++|+||.-..+-+.+=...++..|++.+ +++|++.+. |-. ...+||.+|+||
T Consensus 20 ~~~~tIkVG~~~~p~~~il~~~~k~~l~k~G------i~veiv~F~---Dy~----------------~pN~AL~~G~ID 74 (275)
T 3gxa_A 20 AAKKEIVFGTTVGDFGDMVKEQIQPELEKKG------YTVKLVEFT---DYV----------------RPNLALAEGELD 74 (275)
T ss_dssp ---CEEEEEEETTHHHHHHHHTHHHHHHTTT------CEEEEEEES---SSS----------------HHHHHHHHTSCS
T ss_pred CCCCeEEEEEeCCChHHHHHHHHHHHHHHcC------CeEEEEEeC---CcH----------------hHHHHHHcCCCC
Confidence 3457899999988766532223455666532 357777763 211 367899999999
Q ss_pred EEEeeCCCCCCC----CCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecCC----hHHHHHHHh
Q 020472 143 IAVHSMKDVPTY----LPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTAS----LRRKSQILH 204 (326)
Q Consensus 143 iAVHSlKDlPt~----lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTSS----~RR~aQL~~ 204 (326)
+..-- ..|-. -..|..+.++..-....-.|.+++.++++|||+|++|+... .=|.-+|+.
T Consensus 75 aN~fQ--h~pyL~~~nk~~g~~Lv~v~~~~~~p~glYS~kiksl~dL~~Ga~IAIPnDptN~~RaL~lL~ 142 (275)
T 3gxa_A 75 INVFQ--HKPYLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLD 142 (275)
T ss_dssp EEEEE--CHHHHHHHHHHHTCCEEEEEECCBCCCEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHH
T ss_pred eeecC--CHHHHHHHHHHcCCCEEEEeeccccceEEecCCCCCHHHcCCCCEEEecCCccHHHHHHHHHH
Confidence 98632 11211 01244444443323233457788899999999999999654 345555544
No 29
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=93.06 E-value=0.27 Score=43.02 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeee-c-CCCCCcceeeccCccCcccCCCCCEEecCChHHH--HHHHhh
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCN-L-QREDVRDAFISLSAASLAELPAGSIVGTASLRRK--SQILHR 205 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv-~-kReDprD~LV~~~~~~l~dLp~ga~IGTSS~RR~--aQL~~~ 205 (326)
.++.++|.+|++|+++-+.=-. ....+++.+.++ . -......++|+++. ++|| +|-+||++..--. ..++.+
T Consensus 40 ~~~~~al~~G~~D~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~lv~~~~--~~dL-kGk~Ia~~~~~~~~~~ll~~l 115 (272)
T 2czl_A 40 ETLNRWALEGRLPLTKLSYAAY-AQVRDRYVALRSGGALGRGVGPLVVARGP--LQAL-EGLRVAVPGRHTTAYFLLSLY 115 (272)
T ss_dssp HHHHHHHHTTCCSEEEEEHHHH-TTCTTTEEECSSSCEEESSCCCEEEESSC--CSCC-TTCEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEecHHHH-HhhhCceEEeecccccCCCCceEEEECCC--hHHh-CCCEEEeCCCCchHHHHHHHH
Confidence 4688999999999998664111 122333544432 0 11122345776653 7888 6899998643222 234555
Q ss_pred CCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 206 YPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 206 ~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
....+++ .+.. +..+.-|.+|+.||.++.
T Consensus 116 l~~~~~~-~~~~--~~~~~al~~G~vDa~~~~ 144 (272)
T 2czl_A 116 AQGFVPV-EVRY--DRILPMVAQGEVEAGLII 144 (272)
T ss_dssp CSSCEEE-ECCG--GGHHHHHHTTSSSEEEEC
T ss_pred hccCcee-ecCh--HHHHHHHHCCCCCEEEEe
Confidence 5666777 6653 477788889999999986
No 30
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=92.89 E-value=0.19 Score=42.98 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=72.2
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecC--CCCCcceeecc----CccCcccCCCCCEEecCCh----HHHH
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQ--REDVRDAFISL----SAASLAELPAGSIVGTASL----RRKS 200 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~k--ReDprD~LV~~----~~~~l~dLp~ga~IGTSS~----RR~a 200 (326)
++-.+|.+|++|+++.++-.-|. .-....++. -....-+++.+ ...+++|| .|-+||+..- --..
T Consensus 60 ~~~~~l~~g~~D~~~~~~~~t~e----R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~dL-~g~~v~v~~gs~~~~~~~ 134 (243)
T 4gvo_A 60 NLLVSLGAGKVDIVAHQMEKSKE----REKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDL-AGKRVITSATSNGALVLK 134 (243)
T ss_dssp GHHHHHHTTSCSEECSCCBCCHH----HHHHSEECSSCCEECCEEEEEETTCCSCSSGGGG-TTCEEEECTTCHHHHHHH
T ss_pred HHHHHHHCCCCCEecccCCCCHH----HhhhhhhhhhhcccccceEEEeccccccCchHHh-cCCeEEEecCchHHHHHH
Confidence 45678999999999876532221 000001100 00001112211 22457777 5788876432 1122
Q ss_pred HHHh-hCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhc----ccCCCccceeeecCCCCCCCcccceeeeEeecC
Q 020472 201 QILH-RYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLK----RLSMTENVTNILSVDDMLPAVAQGAIGIACRSN 275 (326)
Q Consensus 201 QL~~-~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~----RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~d 275 (326)
.+.. ..+...+. .--.+.+.-++.|.+|++||+|.-...+. ..+....+ +. +.....-+++-++++
T Consensus 135 ~~~~~~~~~~~~~-~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~k~ 205 (243)
T 4gvo_A 135 KINEEQGNNFEIA-YEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKV---VG-----DVLSNAKVYFMLGKD 205 (243)
T ss_dssp HHHHHTTSCSEEE-ECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEE---EE-----EEEECCEECCEECTT
T ss_pred HHHHhccccceec-cccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEE---ec-----cCCCCCcEEEEEeCC
Confidence 2222 33445444 22345677799999999999987554433 33332222 11 112233466778999
Q ss_pred chhHHhhhh
Q 020472 276 DEKMVPFTT 284 (326)
Q Consensus 276 D~~~~~lL~ 284 (326)
|+++.+.++
T Consensus 206 ~~~l~~~in 214 (243)
T 4gvo_A 206 ETKLSKKVD 214 (243)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 887766554
No 31
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=92.76 E-value=0.045 Score=46.43 Aligned_cols=144 Identities=16% Similarity=0.125 Sum_probs=77.7
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc-----cCcccCCC--CCEEecCChHHH-HHH
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-----ASLAELPA--GSIVGTASLRRK-SQI 202 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~-----~~l~dLp~--ga~IGTSS~RR~-aQL 202 (326)
++.++|.+|++|+++.++-.-|. ..+.+.... +=-....+++.++. .+++||.. |.+||+..---. ..+
T Consensus 63 ~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL~~~~g~~i~~~~g~~~~~~l 139 (257)
T 2q88_A 63 AMIPGLQAGRHDAITAGLFMKPE-RCAAVAYSQ--PILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLA 139 (257)
T ss_dssp GHHHHHHTTSCSEECSCCBCCHH-HHTTSEECS--CCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHH
T ss_pred HHHHHHHCCCcCEEEecccCCHH-HHhcccccc--chhcCceEEEEECCCccCCCCHHHHhccCCceEEEECCcccHHHH
Confidence 46688999999999754322111 111121110 11111234554332 34566642 778886433222 334
Q ss_pred Hhh-CCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhh----cccCCCccceeeecCCCCCCCcccceeeeEeecCch
Q 020472 203 LHR-YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDE 277 (326)
Q Consensus 203 ~~~-~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL----~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~ 277 (326)
... +|+.+++ ... |.+.-++.|.+|++|+++.....+ ++.+. ..+ ..+.+ +...+ .--+++.++++++
T Consensus 140 ~~~~~~~~~~~-~~~-~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~~-~~~~~~~~~k~~~ 212 (257)
T 2q88_A 140 LEAGVPRDRVI-VVP-DGQSGLKMLQDGRIDVYSLPVLSINDLVSKAND-PNV-EVLAP--VEGAP-VYCDGAAFRKGDE 212 (257)
T ss_dssp HHTTCCGGGEE-ECS-SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCC-TTE-EEECS--CBTCC-CEEBCCEECGGGH
T ss_pred HhcCCCCceEE-EcC-CHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCC-cce-eeecc--cCCcc-ccceEEEEcCCCH
Confidence 443 6878887 554 899999999999999999866543 33333 112 22322 11011 1124556777777
Q ss_pred hHHhhhh
Q 020472 278 KMVPFTT 284 (326)
Q Consensus 278 ~~~~lL~ 284 (326)
++.+.++
T Consensus 213 ~l~~~l~ 219 (257)
T 2q88_A 213 ALRDAFD 219 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 32
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=92.42 E-value=0.15 Score=43.16 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=80.5
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC----ccCcccCCCCCEEecCChHH-HHHHHhh
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS----AASLAELPAGSIVGTASLRR-KSQILHR 205 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~----~~~l~dLp~ga~IGTSS~RR-~aQL~~~ 205 (326)
++.++|.+|++|+++-++-.-|. ..+.+.... +=-....+++.++ ..+++|| .|.+||+..--- ...+...
T Consensus 73 ~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~ 148 (249)
T 4f3p_A 73 GLIPALQTQNIDVALSGMTIKEE-RRKAIDFSD--PYYDSGLAAMVQANNTTIKSIDDL-NGKVIAAKTGTATIDWIKAH 148 (249)
T ss_dssp GHHHHHHTTSCSEEEEEEECCHH-HHTTEEECS--CCEEEEEEEEEETTCCSCCSSGGG-TTSEEEEETTSHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEeccccCHH-HHcCcceec--ceeeccEEEEEECCCCCcCChHHh-CCCEEEEeCCChHHHHHHhc
Confidence 56689999999998754422221 111111110 0011223444432 2457777 578887643322 3456777
Q ss_pred CCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhccc----CCCccceeeecCCCCCCCcccceeeeEeecCchhHHh
Q 020472 206 YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRL----SMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVP 281 (326)
Q Consensus 206 ~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RL----gl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~ 281 (326)
+|+.+++ .. .|.+.-++.|.+|++||++....-+..+ +. ..+ .+.. +....--+++.++++++ +.+
T Consensus 149 ~~~~~~~-~~-~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~-~~l-~~~~-----~~~~~~~~~~~~~k~~~-l~~ 218 (249)
T 4f3p_A 149 LKPKEIR-QF-PNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGK-GRV-KVAG-----APVSGDKYGIGFPKGSP-LVA 218 (249)
T ss_dssp CCCSEEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTT-TTE-EEEE-----EEEEEEEEEEEEETTCT-HHH
T ss_pred CCCceEE-Ec-CCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCC-Cce-EEec-----CCCCCccEEEEEcCCch-HHH
Confidence 8999998 55 4899999999999999999976654333 22 112 1111 11233345777888776 544
Q ss_pred hhh
Q 020472 282 FTT 284 (326)
Q Consensus 282 lL~ 284 (326)
.++
T Consensus 219 ~l~ 221 (249)
T 4f3p_A 219 KVN 221 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 33
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=92.27 E-value=0.2 Score=46.26 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=69.5
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
.++|+||+-..+-+.. -+.++..|++.. ++ ++|++.+.. =. +...||.+|+||+.
T Consensus 5 ~~~ikVG~~~~p~~~i-l~~~~~~l~~k~-Gi----~veiv~F~D---y~----------------~pN~AL~~G~IDaN 59 (237)
T 3k2d_A 5 TSKVKVGVMAGAEAQV-AEVAAKVAKEKY-GL----DVELVTFTD---YV----------------TPNAALDDGSIDMN 59 (237)
T ss_dssp CCCEEEEEETTHHHHH-HHHHHHHHHHHH-CC----CEEEEEESC---TT----------------SHHHHHHHTSCSEE
T ss_pred CceEEEEEeCCChHHH-HHHHHHHHHHhc-CC----EEEEEEeCC---hH----------------hHHHHHHcCCCCee
Confidence 3679999988876642 245777777432 23 588887732 21 35689999999998
Q ss_pred EeeCC----CCCCCCCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecCC----hHHHHHHHh
Q 020472 145 VHSMK----DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTAS----LRRKSQILH 204 (326)
Q Consensus 145 VHSlK----DlPt~lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTSS----~RR~aQL~~ 204 (326)
.---. ..-. ..|..+.++..-.-..=.+.+++.+++.|||+|++|+.+. -=|.-+|+.
T Consensus 60 ~fQh~pyL~~~nk--~~g~~lv~v~~~~~~p~glYS~k~ksl~dL~~Ga~IaipnD~tN~~RaL~lL~ 125 (237)
T 3k2d_A 60 AFQHKPYLDRQVE--DRDYKLTIAGNTFVYPIAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLE 125 (237)
T ss_dssp EEEEHHHHHHHHH--HHCCCEEEEEECCCCCCEEECSSCSCSTTCCTTCEEEEECSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH--HCCCCEEEEeeecccceEEecCCCCCHHHhcCCCEEEecCCccHHHHHHHHHH
Confidence 54211 0000 1234444443322222456788899999999999999654 345555554
No 34
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=92.26 E-value=0.26 Score=42.16 Aligned_cols=142 Identities=12% Similarity=0.161 Sum_probs=79.3
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc---cCcccCCCCCEEecCChHHHHHH-----
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRRKSQI----- 202 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~---~~l~dLp~ga~IGTSS~RR~aQL----- 202 (326)
++.++|.+|++|+++-++-.-|. ..+.+.... +=-....+++.++. .+++|| .|.+||+..---....
T Consensus 71 ~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~fs~--p~~~~~~~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~~ 146 (268)
T 3hv1_A 71 MKETELKNGTIDLIWNGYSVTDE-RKQSADFTE--PYMVNEQVLVTKKSSGIDSVAGM-AGKTLGAQAGSSGYDAFNASP 146 (268)
T ss_dssp GHHHHHHHTSCSEECSSCBCCHH-HHTTCEECC--CCEEECEEEEEEGGGCCCSSGGG-TTCCEEEETTCHHHHHHHHCT
T ss_pred HHHHHHHCCCCCEEEecCccCHH-HHhcCcCcH--HHeeCceEEEEECCCCCCCHHHh-CCCEEEEEeCCchHHHHHHhh
Confidence 56789999999999854322221 111222111 11111234554432 457777 5778887544433322
Q ss_pred ---HhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhh----cccCCCccceeeecCCCCCCCcccceeeeEeecC
Q 020472 203 ---LHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRSN 275 (326)
Q Consensus 203 ---~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL----~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~d 275 (326)
+..+|+.+++ .. .|.+.-++.|.+|++||++....-+ ++.+....+. +++.. + ...-+++-++++
T Consensus 147 ~~~~~~~~~~~~~-~~-~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~-~~~~~-~----~~~~~~~~~~k~ 218 (268)
T 3hv1_A 147 KILKDVVANQKVV-QY-STFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYN-VMPAG-Y----EGESFAVGARKV 218 (268)
T ss_dssp TTTTTTSGGGCEE-EE-SSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEE-EEECS-S----CCEEECCEECTT
T ss_pred HHHhhhcccceEE-Ee-CCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceE-ECCCC-C----CCCcEEEEEcCC
Confidence 2235667877 44 4899999999999999999866543 3334322232 22211 1 122355667888
Q ss_pred chhHHhhhh
Q 020472 276 DEKMVPFTT 284 (326)
Q Consensus 276 D~~~~~lL~ 284 (326)
++++.+.++
T Consensus 219 ~~~l~~~ln 227 (268)
T 3hv1_A 219 DKTLIKKIN 227 (268)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 876665554
No 35
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=92.21 E-value=0.44 Score=41.62 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=81.4
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC---ccCcccCCCCCEEecCChH-HHHHHHhhC
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTASLR-RKSQILHRY 206 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~---~~~l~dLp~ga~IGTSS~R-R~aQL~~~~ 206 (326)
++.++|.+|++|+++-.+-.-| +..+.+.+.. +=-....+++.++ ..+++|| .|.+||+..-- -...+...+
T Consensus 97 ~~~~~l~~G~~D~~~~~~~~~~-~r~~~~~~s~--p~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~~ 172 (292)
T 1xt8_A 97 NRVEFLKSNKVDIILANFTQTP-QRAEQVDFCS--PYMKVALGVAVPKDSNITSVEDL-KDKTLLLNKGTTADAYFTQNY 172 (292)
T ss_dssp GHHHHHHTTSCSEECSSCBCCH-HHHTTEEECC--CCEEEEEEEEEETTCCCCSSGGG-TTSEEEEETTSHHHHHHHHHC
T ss_pred HHHHHHhCCCeeEEeecCCCCc-chhcceeeec--cceecceEEEEECCCCCCCHHHh-CCCEEEEeCCCcHHHHHHHhC
Confidence 4678899999999975432111 1122222211 1111123445443 2467788 48888864221 234566678
Q ss_pred CCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCC-ccceeeecCCCCCCCcccceeeeEeecCchhHHhhhh
Q 020472 207 PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT-ENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 284 (326)
Q Consensus 207 Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~-~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL~ 284 (326)
|+.+++ .. .+.+.-++.|.+|++||++....-+..+--. ..+ .++++ |-.-+..+++.++++++++.+.++
T Consensus 173 ~~~~~~-~~-~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l-~~~~~----~~~~~~~~~~~~~k~~~~l~~~l~ 244 (292)
T 1xt8_A 173 PNIKTL-KY-DQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDF-KMGIK----ELGNKDVIAPAVKKGDKELKEFID 244 (292)
T ss_dssp TTSEEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTE-EEEEE----EEEEEEEECCEEETTCHHHHHHHH
T ss_pred CCceEE-Ec-CCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCe-EEccc----ccccCceeEEEEeCCCHHHHHHHH
Confidence 999988 54 4889999999999999999976544332110 011 12211 111122347788888887666554
No 36
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=92.12 E-value=0.19 Score=44.71 Aligned_cols=108 Identities=9% Similarity=0.029 Sum_probs=64.4
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCC--CCceeeeecCCCCCcceeecc----CccCcccCCCCCEEecCChH-----H-
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLP--EKTILPCNLQREDVRDAFISL----SAASLAELPAGSIVGTASLR-----R- 198 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp--~gL~iaAv~kReDprD~LV~~----~~~~l~dLp~ga~IGTSS~R-----R- 198 (326)
++-++|.+|++|+++.+.-....... ..+...+..-+.+..-+++.+ ..++++|| +|.+||+++.- -
T Consensus 76 ~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL-~Gk~i~~~~~gs~~~~~~ 154 (346)
T 3qsl_A 76 KALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADL-KGRKIGVTAPGSSTNMVV 154 (346)
T ss_dssp HHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCCSGGGG-TTCEEEESSTTSHHHHHH
T ss_pred HHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcccCCCChHHc-CCCEEEECCCCcHHHHHH
Confidence 56789999999999876432211112 234444444444433333433 33578888 58899877421 1
Q ss_pred HHHHHhh--C-CCCEEEeccCCCHHHHHhhhccCCccEEeeehhhh
Q 020472 199 KSQILHR--Y-PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL 241 (326)
Q Consensus 199 ~aQL~~~--~-Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL 241 (326)
...++.. . .+++++ ++. +-...+.-|.+|+.||.++...-.
T Consensus 155 ~~~l~~~G~~~~~v~~~-~~~-~~~~~~~al~~G~vDa~~~~~p~~ 198 (346)
T 3qsl_A 155 NFFLAKHGLKASDVSFI-GVG-AGAGAVTALRSGQIDAISNTDPVV 198 (346)
T ss_dssp HHHHHHTTCCGGGSEEE-ECC-SSHHHHHHHHHTSCSEEEEETTHH
T ss_pred HHHHHHcCCCHHHeEEE-ecC-CcHHHHHHHHcCCccEEEecchhH
Confidence 1122222 2 367877 664 336677888999999999865443
No 37
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=92.02 E-value=0.2 Score=41.28 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=80.8
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC----ccCcccCCCCCEEecCChHH-HHHHHhh
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS----AASLAELPAGSIVGTASLRR-KSQILHR 205 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~----~~~l~dLp~ga~IGTSS~RR-~aQL~~~ 205 (326)
++.++|.+|++|++ -++-.-|. ....+...... -....+++.++ ..+++|| .|.+||+..--- ...+...
T Consensus 61 ~~~~~l~~g~~D~~-~~~~~~~~-r~~~~~~s~p~--~~~~~~~~~~~~~~~~~~~~dL-~g~~i~~~~g~~~~~~l~~~ 135 (234)
T 3h7m_A 61 EMFSALKSGRVDVL-QGISWSEK-RARQIDFTPPH--TIVYHAIFARRDSPPAAGLEDL-RGRKVALHRDGIMHEYLAER 135 (234)
T ss_dssp GHHHHHHTTSSSEE-EEEECCHH-HHTTEEEEEEE--EEEEEEEEEESSSCCCSSGGGG-TTSCEEEETTSHHHHHHHTT
T ss_pred HHHHHHhCCCeeEE-EeccCCHh-HHhhcCCCccc--cccceEEEEECCCCCCCCHHHh-CCCEEEEEeCchHHHHHHhc
Confidence 56789999999995 33321111 11222221110 01123445433 2457777 577777754322 3456777
Q ss_pred CCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhh----cccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHh
Q 020472 206 YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVP 281 (326)
Q Consensus 206 ~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL----~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~ 281 (326)
.|+.+++ .. .|.+.-++.|.+|++||++....-+ ++.+... + ..... .....-+++.++++++++.+
T Consensus 136 ~~~~~~~-~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~~~~~~~~~~~~~~l~~ 206 (234)
T 3h7m_A 136 GYGKDLV-LT-PTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTN-L-VPVAR-----SIAAQRYGYAVRQGDAELLA 206 (234)
T ss_dssp TCGGGEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTT-E-EEEEE-----EEEEEEEEEEEETTCHHHHH
T ss_pred CCCceEE-Ee-CCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCc-e-EEecc-----ccCCCceEEEEeCCCHHHHH
Confidence 8888887 54 4889999999999999999866543 3444332 2 11111 12233467788888876665
Q ss_pred hhh
Q 020472 282 FTT 284 (326)
Q Consensus 282 lL~ 284 (326)
.++
T Consensus 207 ~l~ 209 (234)
T 3h7m_A 207 RFS 209 (234)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 38
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=92.01 E-value=0.22 Score=41.38 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc----cCcccCCCCCEEecCChHH-HHHHHhh
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELPAGSIVGTASLRR-KSQILHR 205 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~----~~l~dLp~ga~IGTSS~RR-~aQL~~~ 205 (326)
++..+|.+|++|+++-++-.-|. ..+.+.... +=-....+++.+++ .+++|| .|.+||+..--- ...+...
T Consensus 54 ~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~~s~--p~~~~~~~l~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~~ 129 (239)
T 1lst_A 54 ALIPSLKAKKIDAIISSLSITDK-RQQEIAFSD--KLYAADSRLIAAKGSPIQPTLESL-KGKHVGVLQGSTQEAYANDN 129 (239)
T ss_dssp GHHHHHHTTSCSEECSSCBCCHH-HHHHCEECS--CSBCCCEEEEEETTCCCCSSHHHH-TTCEEEEETTSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECcCcCHH-Hhhceeecc--cceeCceEEEEeCCCCCCCCHHHh-CCCEEEEEcCccHHHHHHHh
Confidence 46789999999999764321111 001111110 11112234444332 256677 577887642221 2234444
Q ss_pred C--CCCEEEeccCCCHHHHHhhhccCCccEEeeehhhh
Q 020472 206 Y--PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL 241 (326)
Q Consensus 206 ~--Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL 241 (326)
+ ++++++ .. .|.++-++.|.+|++|+++.....+
T Consensus 130 ~~~~~~~~~-~~-~~~~~~~~~l~~G~vDa~~~~~~~~ 165 (239)
T 1lst_A 130 WRTKGVDVV-AY-ANQDLIYSDLTAGRLDAALQDEVAA 165 (239)
T ss_dssp TGGGTCEEE-EE-SSHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred cccCCCeEE-Ec-CCHHHHHHHHHcCCCCEEEeCcHHH
Confidence 4 678887 54 4899999999999999999876543
No 39
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=92.01 E-value=0.44 Score=39.79 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=41.6
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+=.+ ++..-.-.+...+++.||++. +++... + +.++.++|.+|++|+
T Consensus 6 ~~g~l~Ig~~~~-~~~~~lp~~l~~f~~~~P~v~----l~l~~~----~----------------~~~l~~~L~~g~iDl 60 (218)
T 2y7p_A 6 STRTFNLAMTDI-GEMYFMPPLMEALAQRAPHIQ----ISTLRP----N----------------AGNLKEDMESGAVDL 60 (218)
T ss_dssp CCCEEEEECCHH-HHHHHHHHHHHHHHHHCTTCE----EEEECC----C----------------TTTHHHHHHHTSSCE
T ss_pred cceEEEEEecHH-HHHHHHHHHHHHHHHHCCCCE----EEEEeC----C----------------cccHHHHHhCCCceE
Confidence 457899999643 444455567788889999863 544321 1 136889999999999
Q ss_pred EEee
Q 020472 144 AVHS 147 (326)
Q Consensus 144 AVHS 147 (326)
|+-.
T Consensus 61 ~i~~ 64 (218)
T 2y7p_A 61 ALGL 64 (218)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9964
No 40
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=91.73 E-value=0.38 Score=41.73 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=78.2
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc---cCcccCCCCCEEecCChHH-HHHHHh--
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRR-KSQILH-- 204 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~---~~l~dLp~ga~IGTSS~RR-~aQL~~-- 204 (326)
++..+|.+|++|+++-++-.-|. ..+.+......- ....+++.+++ .+++|| .|.+||+..--- ...+..
T Consensus 74 ~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~~s~p~~--~~~~~l~~~~~~~i~sl~dL-~g~~v~~~~g~~~~~~l~~~~ 149 (287)
T 2vha_A 74 NRIPLLQNGTFDFECGSTTNNVE-RQKQAAFSDTIF--VVGTRLLTKKGGDIKDFADL-KGKAVVVTSGTTSEVLLNKLN 149 (287)
T ss_dssp THHHHHHTTSCSEECSSCBCCHH-HHTTCEEEEEEE--EEEEEEEEETTSSCCSGGGG-TTCEEEEETTSHHHHHHHHHH
T ss_pred HHHHHHHCCCeeEEeccccCCcc-hhhcccccceee--ecceEEEEECCCCCCCHHHc-CCCEEEEeCCCcHHHHHHHHh
Confidence 46688999999999743321111 112222211110 11234554432 456777 477887632111 122222
Q ss_pred --hCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhccc----CCCccceeeecCCCCCCCcccceeeeEeecCchh
Q 020472 205 --RYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRL----SMTENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278 (326)
Q Consensus 205 --~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RL----gl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~ 278 (326)
..++.+++ ... +.+.-++.|.+|++|+++.....+..+ +....+ .++... ....-+++.+++++++
T Consensus 150 ~~~~~~~~~~-~~~-~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~k~~~~ 221 (287)
T 2vha_A 150 EEQKMNMRII-SAK-DHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNW-DIVGKP-----QSQEAYGCMLRKDDPQ 221 (287)
T ss_dssp HHTTCCCEEE-EES-SHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGE-EEESCC-----SCEEEEEEEECTTCHH
T ss_pred hccCCCceEE-EcC-CHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCce-EecCCc-----cccCceEEEEeCCCHH
Confidence 24688887 554 788999999999999999866544332 221222 222221 1234567888888877
Q ss_pred HHhhhh
Q 020472 279 MVPFTT 284 (326)
Q Consensus 279 ~~~lL~ 284 (326)
+.+.++
T Consensus 222 l~~~l~ 227 (287)
T 2vha_A 222 FKKLMD 227 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 41
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=91.62 E-value=0.19 Score=46.53 Aligned_cols=189 Identities=15% Similarity=0.092 Sum_probs=102.7
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-..+-+. .-+.++..|++.+ + ++|++.+.. | . ....||.+|+||+
T Consensus 2 ~~~~i~VG~~~~p~~~-i~~~v~~~l~k~G--i----~veiv~F~d-y--~----------------~pN~AL~~G~iD~ 55 (246)
T 4ef1_A 2 DDSVLKVGASPVPHAE-ILEHVKPLLEKEG--V----KLEVTTYTD-Y--V----------------LPNKALESGDIDA 55 (246)
T ss_dssp CCEEEEEEECTTTHHH-HHHHHHHHHHHTT--E----EEEEEECSS-S--S----------------HHHHHHHHTSCSE
T ss_pred CCcEEEEEEeCCChHH-HHHHHHHHHHhcC--C----EEEEEEeCC-c--h----------------hHHHHHHCCCCCE
Confidence 3568999999876553 1234777777642 3 466666532 1 1 3457999999999
Q ss_pred EEe--e--CCCCCCCCCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecCC----hHHHHHHHhhC------C--
Q 020472 144 AVH--S--MKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTAS----LRRKSQILHRY------P-- 207 (326)
Q Consensus 144 AVH--S--lKDlPt~lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTSS----~RR~aQL~~~~------P-- 207 (326)
..- - |...-. ..|..+.++..=...-=.+.+++.+++.|||+|++|+.+. -=|.-+|+... +
T Consensus 56 n~fQh~pyl~~~~k--~~g~~Lv~v~~~~~~p~glYS~kiksl~dL~~Ga~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~ 133 (246)
T 4ef1_A 56 NYFQHVPFFNEAVK--ENDYDFVNAGAIHLEPVGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGV 133 (246)
T ss_dssp EEEEEHHHHHHHHH--HHTCCEEEEEEEEECCCEEECSSCSSGGGSCTTCEEEEESCGGGHHHHHHHHHHTTSEEECTTC
T ss_pred EecCCHHHHHHHHH--HCCCCEEEEeeccccceEEecCCCCCHHHcCCCCEEEeecCCchHHHHHHHHHHCCCeeecCCC
Confidence 862 2 110000 1133333332111111356678889999999999999765 24455554321 1
Q ss_pred ---------------CCEE-EeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCcc-ceeeecCCCCCCCcccceeee
Q 020472 208 ---------------SLKV-MENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTEN-VTNILSVDDMLPAVAQGAIGI 270 (326)
Q Consensus 208 ---------------dl~v-~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~-i~~~L~~~~~lPA~GQGaLAV 270 (326)
+++| + ++-.. +=-+-|++|+.||.++---=...-|+... -.-+++... .+=+.-|
T Consensus 134 ~~~~~t~~DI~~Npk~l~~~~-el~aa--ql~~al~dg~vDaavin~n~a~~agl~p~~dal~~E~~~-----~~y~n~i 205 (246)
T 4ef1_A 134 DRTTATFDDIDKNTKKLKFNH-ESDPA--IMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAIALEKES-----SPYANII 205 (246)
T ss_dssp CGGGCCGGGEEEETTCCEEEE-EECGG--GHHHHHHTTCSSEEEECHHHHHHTTCCHHHHCSEECSCC-----GGGCEEE
T ss_pred CcCcCCHhHHhcCCCccEEee-ecCHH--HHHHHhccccccEEEEechHHHHcCCCCccCceEEcCCC-----CCeEEEE
Confidence 2567 6 55432 22345788999999884322222233311 000122211 1334455
Q ss_pred EeecC---chhHHhhhhcccc
Q 020472 271 ACRSN---DEKMVPFTTHSQA 288 (326)
Q Consensus 271 e~R~d---D~~~~~lL~~~~~ 288 (326)
.+|++ ++++..+.+.+|+
T Consensus 206 ~vr~~~~~~~~~k~lv~~~~s 226 (246)
T 4ef1_A 206 AVRKEDENNENVKKLVKVLRS 226 (246)
T ss_dssp EEEGGGTTCHHHHHHHHHHHS
T ss_pred EEeccccCCHHHHHHHHHHcC
Confidence 66764 4567777776664
No 42
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=90.94 E-value=0.44 Score=38.84 Aligned_cols=105 Identities=10% Similarity=0.166 Sum_probs=60.8
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeecc-------CccCcccCCCCCEEecCChHHH-HH
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISL-------SAASLAELPAGSIVGTASLRRK-SQ 201 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~-------~~~~l~dLp~ga~IGTSS~RR~-aQ 201 (326)
+++.++|.+|++|+++-++--.|. ..+.+.... +=-....+++.+ ...+++|| .|.+||+..---. ..
T Consensus 51 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~dL-~g~~i~~~~g~~~~~~ 126 (228)
T 2pyy_A 51 PELISAIKDNKVNLGIAAISITAE-REQNFDFSL--PIFASGLQIMVRNLESGTGDIRSIDDL-PGKVVATTAGSTAATY 126 (228)
T ss_dssp HHHHHHHHTTSCSEECSSCBCCHH-HHHHSEECS--CSEEEEEEEEEEC-----CCCCSGGGC-TTCEEEEETTSHHHHH
T ss_pred HHHHHHHHCCCcCEEEeccccCHH-HHccceecc--cchhcceEEEEECCccccCCcCCHHHc-CCCeEEEEcCcHHHHH
Confidence 567799999999999754321111 011111110 000111233333 22467788 5788886422222 23
Q ss_pred HHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhc
Q 020472 202 ILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLK 242 (326)
Q Consensus 202 L~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~ 242 (326)
+.. ++++++ .. .|..+-++.|.+|++|+++.....+.
T Consensus 127 l~~--~~~~~~-~~-~~~~~~~~~l~~g~~D~~~~~~~~~~ 163 (228)
T 2pyy_A 127 LRE--HHISVL-EV-PKIEEAYKALQTKKADAVVFDAPVLL 163 (228)
T ss_dssp HHH--TTCEEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHHH
T ss_pred HHH--cCCceE-ec-CCHHHHHHHHHcCCCCEEEecHHHHH
Confidence 333 567776 43 58999999999999999999765443
No 43
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=90.46 E-value=0.75 Score=41.41 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=80.3
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
...+||||.=+.+-++.=.. .+++.... ++.++++....+ ..++-++|.+|++|+
T Consensus 3 ~~~~irvg~~~~~~~~~~~~----~~~~~~~~--~g~~v~~~~~~~-------------------~~~~~~al~~G~~D~ 57 (283)
T 3hn0_A 3 EDTVIKVSVLRGPSVIAFAD----WLENPPII--DNKKVQVKVVDS-------------------PDLAQALLIKQETDI 57 (283)
T ss_dssp -CCEEEEEEESSTHHHHTHH----HHHSCCEE--TTEEEEEEEESC-------------------HHHHHHHHHTTCCSE
T ss_pred CcceEEEEecCCCcHHHHHH----HHhccccc--cCccEEEEEeCC-------------------HHHHHHHHHCCCCCE
Confidence 45689999998876543322 34433211 123455555432 246889999999999
Q ss_pred EEeeC--------CCCCCCCCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecCC---hHH---HHHHHhhCCCC
Q 020472 144 AVHSM--------KDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTAS---LRR---KSQILHRYPSL 209 (326)
Q Consensus 144 AVHSl--------KDlPt~lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTSS---~RR---~aQL~~~~Pdl 209 (326)
++-+. |.. .+.++++.... ...+|+++. | +|-+||++. .-- +..|...--|+
T Consensus 58 ~~~~~~~~~~~~~~g~------~~~i~~~~~~g--~~~lv~~~~-----L-kGK~Iav~~~gs~~~~ll~~~L~~~Gldv 123 (283)
T 3hn0_A 58 AVLPMINAANLYNKGI------KIKLAGCPIWG--TLYLVEKTP-----L-KEPALYVFGNGTTPDILTRYYLGRQRLDY 123 (283)
T ss_dssp EEEEHHHHHHHHHTTC------SCEEEEEEECC--CCEEEECSS-----C-CSCCEECSSTTSHHHHHHHHHHHHHTCCC
T ss_pred EEEcHHHHHHHHHCCC------CeEEEEEeccc--EEEEEecCC-----C-CCCEEEecCCCCcHHHHHHHHHHHcCCce
Confidence 98642 332 34556665433 234555532 4 688888642 111 11222222278
Q ss_pred EEEeccCCCHHHHHhhhccCCccEEeeeh
Q 020472 210 KVMENFRGNVQTRLRKLNERVVQATLLAL 238 (326)
Q Consensus 210 ~v~~~iRGNV~TRL~KL~~ge~DAIILA~ 238 (326)
+++ .+.-+-.....-|.+|+.||.++..
T Consensus 124 ~~~-~~~~~~~~~~~al~~G~vDa~~~~e 151 (283)
T 3hn0_A 124 PLN-YAFNTAGEITQGILAGKVNRAVLGE 151 (283)
T ss_dssp CEE-CSCCSHHHHHHHHHHTSCSEEEECT
T ss_pred EEE-EccCCHHHHHHHHHcCCCCEEEecc
Confidence 887 5543677888889999999999854
No 44
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=90.26 E-value=0.39 Score=44.59 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=68.7
Q ss_pred ceEEEEeCCCHHHHHHHHH-HHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 66 AIIRIGTRGSPLALAQAHE-TRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 66 ~~IrIGTR~S~LAlaQa~~-V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
.+|+||+-..+-+.+= +. ++..|++.+ + ++|++.+. |=. ....||.+|+||+-
T Consensus 1 ~~ikVG~~~~p~~~il-~~~~k~~l~k~G--i----~leiv~F~---Dy~----------------~pN~AL~~G~iDaN 54 (245)
T 3ir1_A 1 KEIVFGTTVGDFGDMV-KEQIQPELEKKG--Y----TVKLVEFT---DYV----------------RPNLALAEGELDIN 54 (245)
T ss_dssp CEEEEEEETTHHHHHH-HHTHHHHHHTTT--C----EEEEEEES---SSS----------------HHHHHHHHTSCSEE
T ss_pred CeEEEEEcCCChHHHH-HHHHHHHHHHcC--c----eEEEEEeC---CcH----------------hHHHHHHCCCcCee
Confidence 3699999888866532 33 456666532 3 57777763 321 36789999999987
Q ss_pred EeeCCCCCCC----CCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecCC----hHHHHHHHh
Q 020472 145 VHSMKDVPTY----LPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTAS----LRRKSQILH 204 (326)
Q Consensus 145 VHSlKDlPt~----lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTSS----~RR~aQL~~ 204 (326)
..-- .|-. -..|..+.++.+-.-.-=.+-++++++++|||+|++|+... .=|.-.|+.
T Consensus 55 ~fQh--~pyL~~~nk~~g~~Lv~v~~~~~~p~glYS~k~ksl~dl~~Ga~IaIPnDptN~~RaL~lL~ 120 (245)
T 3ir1_A 55 VFQH--KPYLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLD 120 (245)
T ss_dssp EEEC--HHHHHHHHHHHTCCEEEEEECCBCCCEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHH
T ss_pred ccCC--HHHHHHHHHHcCCCEEEEeeecccceEEecCCCCCHHHcCCCCEEEecCCccHHHHHHHHHH
Confidence 5322 1110 01244555554333333456688899999999999999643 355555554
No 45
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=90.00 E-value=0.28 Score=45.60 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=67.8
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEEE
Q 020472 66 AIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAV 145 (326)
Q Consensus 66 ~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiAV 145 (326)
++|+||+-..+-+.. -+.++..+++.+ + +++++.+. |= -...+||.+|+||+..
T Consensus 11 ~~ikVG~~~~p~~~i-l~~v~~~~~k~G--i----~veiv~F~---Dy----------------~~pN~AL~~G~iDaN~ 64 (252)
T 4ib2_A 11 KTIKVAASATPHAEI-LEQAKSILKKEG--Y----QLEVTVFD---DY----------------VQPNEVVESGEFDANY 64 (252)
T ss_dssp HEEEEEECTTTHHHH-HHHHHHHHHHTT--C----EEEEEECS---SS----------------SHHHHHHHTTSSSEEE
T ss_pred ceEEEEEcCCChHHH-HHHHHHHHHhcC--C----eEEEEEec---Ch----------------hhHHHHHHcCCcCeee
Confidence 579999988776642 134677777643 3 57777663 21 1467899999999975
Q ss_pred eeCCCCCCC----CCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecCCh----HHHHHHHh
Q 020472 146 HSMKDVPTY----LPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASL----RRKSQILH 204 (326)
Q Consensus 146 HSlKDlPt~----lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTSS~----RR~aQL~~ 204 (326)
---. |-. -..|..+.++..-...--.+.+++.+++.|||+|++|+.+.- =|.-+|+.
T Consensus 65 fQh~--pyL~~~~k~~g~~lv~v~~~~~~p~glyS~kiksl~dLk~Ga~IAipnd~sN~~RaL~lL~ 129 (252)
T 4ib2_A 65 FQHV--PYLESFNEEKGTHLVDAGDIHYEPFGIYPGTKKSLDEISEGDKIAVPNDTTNEARALLLLQ 129 (252)
T ss_dssp EEEH--HHHHHHHHHHCCCEEEEEEEEECCCEEEESSCSCGGGCCTTCEEEEECSHHHHHHHHHHHH
T ss_pred cCCH--HHHHHHHHHCCCCEEEEeeccccceEeecCCcCCHHHcCCCCEEEeeCCCCHHHHHHHHHH
Confidence 3221 100 012344444432222223566788899999999999997543 45545554
No 46
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=89.94 E-value=1.5 Score=35.15 Aligned_cols=181 Identities=11% Similarity=0.063 Sum_probs=99.2
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
.++|+||+=.+.... ---.+...+++.||++. +++.... ..++.++|.+|++|++
T Consensus 3 ~g~l~Ig~~~~~~~~-~l~~~l~~~~~~~P~i~----i~i~~~~--------------------~~~~~~~l~~g~~Dl~ 57 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPY-LLPKLIVSLRRTAPKMP----LMLEENY--------------------THTLTESLKRGDVDAI 57 (219)
T ss_dssp CCCEEEEEETTTHHH-HHHHHHHHHHHHSTTCC----EEEEEEC--------------------HHHHHHHHHHTSSSEE
T ss_pred CCcEEEEEcchhhHH-HHHHHHHHHHHHCCCcE----EEEEeCC--------------------cHHHHHHHHcCCCCEE
Confidence 467999998775444 44556677788899873 6654332 3578899999999999
Q ss_pred EeeCCCCCCCCCCCceeeeecCCCCCcceeeccC-------ccCcccCCCCCEEecC--ChHHHHHHHhh----------
Q 020472 145 VHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-------AASLAELPAGSIVGTA--SLRRKSQILHR---------- 205 (326)
Q Consensus 145 VHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~-------~~~l~dLp~ga~IGTS--S~RR~aQL~~~---------- 205 (326)
+-.... .++++....+. .++--+++.++ ..++++|..-..|..+ +.-|. .+...
T Consensus 58 i~~~~~----~~~~~~~~~l~--~~~~~~v~~~~~pl~~~~~~~~~~L~~~~~i~~~~~~~~~~-~~~~~~~~~g~~~~~ 130 (219)
T 3jv9_A 58 IVAEPF----QEPGIVTEPLY--DEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRD-QVLSSCSELAAKQRI 130 (219)
T ss_dssp EEESSC----CCTTEEEEEEE--EEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHH-HHHHHCSTTHHHHHH
T ss_pred EEcCCC----CCCCeeEEEee--eceEEEEEeCCCCcccCCCCCHHHhcCCcEEEecCCccHHH-HHHHHHHhhhhhhcc
Confidence 987632 24565433222 22222222222 2356677665555432 22222 22222
Q ss_pred -CCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCc---hhHHh
Q 020472 206 -YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND---EKMVP 281 (326)
Q Consensus 206 -~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD---~~~~~ 281 (326)
.|+..+. =.|.++-+.-+.+|.. ..+++..-...+ ....+ ..++.+.. .-.--+.+.++++. +.+..
T Consensus 131 ~~~~~~~~---~~~~~~~~~~v~~g~g-i~~~p~~~~~~~-~~~~l-~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~ 201 (219)
T 3jv9_A 131 QGLTNTLQ---GSSINTIRHMVASGLA-ISVLPATALTEN-DHMLF-SIIPFEGT---PPSRRVVLAYRRNFVRPKALSA 201 (219)
T ss_dssp HTTTSSCE---ESSHHHHHHHHHHTSC-EEEEEGGGCCTT-CTTTE-EEECCSSS---CCEEEEEEEEETTCSCHHHHHH
T ss_pred CCCCceEE---eCCHHHHHHHHHcCCc-EEehhHHHHHhc-cCCcE-EEEecCCC---CcceeEEEEEecCccccHHHHH
Confidence 3443332 3588999998888854 344555444443 22233 33444332 22345667777653 34444
Q ss_pred hhhcc
Q 020472 282 FTTHS 286 (326)
Q Consensus 282 lL~~~ 286 (326)
+++.+
T Consensus 202 ~~~~l 206 (219)
T 3jv9_A 202 MKAAI 206 (219)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 47
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=89.84 E-value=0.19 Score=46.51 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=68.2
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-..+-+.+ -+.|+..|++.. ++ ++|++.+. |= -+...||.+|+||+
T Consensus 5 ~~~~ikVG~~~~p~~~i-l~~v~~~l~k~~-Gi----~veiv~F~---Dy----------------~~pN~AL~~G~IDa 59 (245)
T 3up9_A 5 DVVTLTVGATPSPHAKI-LTYINDNLAADA-GI----KLDIVEYT---DY----------------VQPNTALNDGDLDA 59 (245)
T ss_dssp CCEEEEEEECTTTHHHH-HHHHHHHTHHHH-TE----EEEEEECS---SS----------------HHHHHHHHTTSCSE
T ss_pred CCceEEEEEeCCChHHH-HHHHHHHHHHHc-CC----eEEEEEec---Cc----------------ccHHHHHHcCCCce
Confidence 34679999887766542 245777776532 12 47777663 21 24678999999999
Q ss_pred EEeeCC----CCCCCCCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecCCh----HHHHHHHh
Q 020472 144 AVHSMK----DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASL----RRKSQILH 204 (326)
Q Consensus 144 AVHSlK----DlPt~lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTSS~----RR~aQL~~ 204 (326)
..---+ ..-. ..|..+..+..-.-..=.+.++++++++|||+|++|+...- =|.-.|+.
T Consensus 60 N~fQH~pyL~~~nk--~~g~~lv~v~~~~~~p~giYS~k~ksl~dL~~Ga~IaIPnD~tN~~RaL~lL~ 126 (245)
T 3up9_A 60 NFYQTVPYLENAEK--QFGYNFEAGEGIHLEPLGVFSNKHKSLDELPDGGTIGIISDTANQSRALELLA 126 (245)
T ss_dssp EEEEEHHHHHHHHH--HHCCCEEECCCCEECCCEEECSSCSCGGGCCTTEEEEEECSHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHH--HCCCCEEEEeeecccceEEEeCCCCCHHHcCcCCEEEEecCcchHHHHHHHHH
Confidence 754211 0000 11333444332222223566788999999999999997543 45555544
No 48
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=89.79 E-value=0.37 Score=44.49 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=68.9
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
+++|+||+-..+-+.. -+.++..|++.. ++++|++.+.. =. ...+||.+|+||+.
T Consensus 2 ~~~ikVG~~~~p~~~i-~~~~~~~l~~~~-----Gi~veiv~F~D---y~----------------~pN~AL~~G~iDaN 56 (240)
T 3tqw_A 2 NAMVRVGTIAGPETQL-MEVAKQVALNRY-----GLHVNIITFSD---YN----------------TPNEALADGSVDAN 56 (240)
T ss_dssp --CEEEEEETTHHHHH-HHHHHHHHHHHH-----CCCEEEEEESC---TT----------------SHHHHHHTTSCSEE
T ss_pred CceEEEEEeCCChHHH-HHHHHHHHHHhc-----CCeEEEEEeCC---hH----------------hHHHHHHcCCcCee
Confidence 3579999998876642 245777787432 22588887732 21 35689999999998
Q ss_pred E--ee--CCCCCCCCCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecC----ChHHHHHHHhh
Q 020472 145 V--HS--MKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTA----SLRRKSQILHR 205 (326)
Q Consensus 145 V--HS--lKDlPt~lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTS----S~RR~aQL~~~ 205 (326)
. |. |...-. ..|..+.++..-....-.+.+++.+++.|||+|++|+.+ .-=|.-+++..
T Consensus 57 ~fQh~pyl~~~~k--~~g~~lv~v~~~~~~p~glYS~k~ksl~dL~~Ga~Iaipnd~tn~~RaL~lL~~ 123 (240)
T 3tqw_A 57 MFQHLPYLKAQIE--MRGYKIVSIGKTFVYPMGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEK 123 (240)
T ss_dssp EEEEHHHHHHHHH--HHCCCEEEEEEEEECCCEEECSSCSSGGGCCTTCEEEEECSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH--HCCCCEEEEeeccccceEEecCCCCCHHHhcCCCEEEEecCccHHHHHHHHHHH
Confidence 4 32 211100 113333333222222245778889999999999999954 44566666653
No 49
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=89.56 E-value=1.3 Score=36.85 Aligned_cols=177 Identities=9% Similarity=-0.019 Sum_probs=92.6
Q ss_pred cCCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCc
Q 020472 63 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQID 142 (326)
Q Consensus 63 ~~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iD 142 (326)
...++|+||+=.+. +..-.-.+...+++.||++. +++.... ..++.++|.+|++|
T Consensus 16 ~~~g~l~Ig~~~~~-~~~~l~~~l~~f~~~~P~i~----l~~~~~~--------------------~~~~~~~l~~g~~D 70 (241)
T 3oxn_A 16 QCDQTFTIATTDYA-MQTILPFALPRIYQEAPNVS----FNFLPLQ--------------------HDRLSDQLTYEGAD 70 (241)
T ss_dssp SCCCEEEEEECSHH-HHHTHHHHHHHHHHHCTTCE----EEEEECC--------------------GGGHHHHHHTSCCS
T ss_pred cCCceEEEEechHH-HHHHHHHHHHHHHHHCCCCE----EEEEECC--------------------cccHHHHHHcCCCC
Confidence 45678999998774 44455566778888899863 5544321 13688999999999
Q ss_pred EEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc------cCcccCCCCCEEecCCh-HHHHHHHhhC---CCCEEE
Q 020472 143 IAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA------ASLAELPAGSIVGTASL-RRKSQILHRY---PSLKVM 212 (326)
Q Consensus 143 iAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~------~~l~dLp~ga~IGTSS~-RR~aQL~~~~---Pdl~v~ 212 (326)
+++..... .++++....+. .++--+++.++. .++++|..-..|..+.. .-..++...+ ...++.
T Consensus 71 l~i~~~~~----~~~~~~~~~l~--~~~~~~v~~~~hpl~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (241)
T 3oxn_A 71 LAICRPTG----PVEPLRSEILG--RVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMV 144 (241)
T ss_dssp EEEECCSS----CCTTEEEEEEE--CCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTSCCCEEE
T ss_pred EEEecCCC----CCccceeEEee--cccEEEEEeCCCCcccCCCCHHHHhcCCeEEEecCCCccchhHHHHHhhccceEE
Confidence 99986432 35566543332 333333333322 23444544444543322 1112222222 344444
Q ss_pred eccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCc
Q 020472 213 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND 276 (326)
Q Consensus 213 ~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD 276 (326)
-.-.|+.+-+.-+.+|..= .+++..-.....-...+ ..++.+...| .--+.+.++++.
T Consensus 145 -~~~~~~~~~~~~v~~g~gi-ailp~~~~~~~~~~~~l-~~~~~~~~~~---~~~~~l~~~~~~ 202 (241)
T 3oxn_A 145 -LRAYHLEAALAIVDTLPII-ITVPADLAYLVAERYDL-VVKPLPFQFT---PFDYSMIWHARC 202 (241)
T ss_dssp -EECSSTHHHHHHC--CCCE-EEEEHHHHHHHHHHTTE-EEECCSSCCC---CCCEEEEEEGGG
T ss_pred -EECCcHHHHHHHHhCCCeE-EEcHHHHHHHhcccCCc-eEeCCCCCCC---cccEEEEEcCcC
Confidence 3457888888888887543 34444433322111122 2333332222 234667776643
No 50
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=89.29 E-value=0.39 Score=41.44 Aligned_cols=107 Identities=9% Similarity=0.115 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc---cCcccCCCCCEEecCChHH-HHHHHhh
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRR-KSQILHR 205 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~---~~l~dLp~ga~IGTSS~RR-~aQL~~~ 205 (326)
.++.++|.+|++|+++-.+-..|. ..+.+.... +=-....+++.++. .+++|| .|.+||+..--- ...+...
T Consensus 90 ~~~~~~l~~G~~D~~~~~~~~~~~-r~~~~~~s~--p~~~~~~~l~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~ 165 (272)
T 2pvu_A 90 DPLFASLQSKEVDMGISGITITDE-RKQSYDFSD--PYFEATQVILVKQGSPVKNALDL-KGKTIGVQNATTGQEAAEKL 165 (272)
T ss_dssp HHHHHHHHHTSSSEECSSCBCCHH-HHTTEEECS--CCEEECEEEEEETTCCCCSGGGG-TTSCEEEETTSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEeCCcCCHH-HHhcCccch--hhhccceEEEEECCCCCCCHHHh-CCCeEEEEcCchHHHHHHHh
Confidence 467889999999999754321111 112222211 00011234444332 456777 477777632211 2344444
Q ss_pred CC-CCEEEeccCCCHHHHHhhhccCCccEEeeehhhhc
Q 020472 206 YP-SLKVMENFRGNVQTRLRKLNERVVQATLLALAGLK 242 (326)
Q Consensus 206 ~P-dl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~ 242 (326)
++ +.+++ .. .+.++-++.|.+|++|+++.....+.
T Consensus 166 ~~~~~~i~-~~-~~~~~~~~~l~~G~vDa~~~~~~~~~ 201 (272)
T 2pvu_A 166 FGKGPHIK-KF-ETTVVAIMELLNGGVDAVITDNAVAN 201 (272)
T ss_dssp HCSSTTEE-EE-SSHHHHHHHHHTTSCSEEEEEHHHHH
T ss_pred cCCCCeEE-Ec-CCHHHHHHHHHcCCccEEEeCHHHHH
Confidence 44 66776 45 58999999999999999998765443
No 51
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=89.21 E-value=1.2 Score=36.49 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=41.8
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
.++||||+=.+.-. .---.+...+++.||++. +++.... +.++.++|.+|++|+|
T Consensus 4 ~g~lrIg~~~~~~~-~~l~~~l~~f~~~~P~v~----l~l~~~~--------------------~~~~~~~l~~g~~Dl~ 58 (219)
T 1i6a_A 4 SGPLHIGLIPTVGP-YLLPHIIPMLHQTFPKLE----MYLHEAQ--------------------THQLLAQLDSGKLDAV 58 (219)
T ss_dssp CEEEEEEECTTTHH-HHHHHHHHHHHHHCTTEE----EEEEECC--------------------HHHHHHHHHHTSCSEE
T ss_pred ceEEEEEeccchhh-hhhhHHHHHHHHHCCCeE----EEEEECC--------------------hHHHHHHHHcCCeeEE
Confidence 46899999877543 344556777888899752 4443211 3578899999999999
Q ss_pred EeeC
Q 020472 145 VHSM 148 (326)
Q Consensus 145 VHSl 148 (326)
+-..
T Consensus 59 i~~~ 62 (219)
T 1i6a_A 59 ILAL 62 (219)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9754
No 52
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=89.19 E-value=13 Score=33.77 Aligned_cols=156 Identities=9% Similarity=0.042 Sum_probs=93.4
Q ss_pred eEEEEe---CCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 67 IIRIGT---RGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 67 ~IrIGT---R~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
++|+++ -++.... .++..++.+++...+ ++++..... |- +|+ -.|+=+++..|.+|+
T Consensus 2 ~lk~~~~~~~~~~~~~-~~~~fa~~v~~~s~G-----~i~i~~~~~-g~---------Lg~----~~~~~~~v~~G~id~ 61 (301)
T 2pfz_A 2 KWDLPTAYPASNLHVE-NLTQFVKDVDSLSGG-----KLKITLHNN-AS---------LYK----APEIKRAVQGNQAQI 61 (301)
T ss_dssp EEEEECSSCTTSHHHH-HHHHHHHHHHHHHTT-----SCEEEEECT-TS---------SSC----GGGHHHHHHTTSSSE
T ss_pred eeEecccCCCCchhhH-HHHHHHHHHHHHcCC-----eEEEEEccC-cc---------cCC----hHHHHHHHHCCceee
Confidence 467776 3455543 456778888776432 355544422 21 122 146679999999999
Q ss_pred EEeeCC------------CCCCCCC----------------------CCceeeeecCCCCCcceeec-cCccCcccCCCC
Q 020472 144 AVHSMK------------DVPTYLP----------------------EKTILPCNLQREDVRDAFIS-LSAASLAELPAG 188 (326)
Q Consensus 144 AVHSlK------------DlPt~lp----------------------~gL~iaAv~kReDprD~LV~-~~~~~l~dLp~g 188 (326)
++-+.- |+|-..+ .|+.+.+...-. ++. +.+ +.-++++|| +|
T Consensus 62 ~~~~~~~~~~~~p~~~~~~lPf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~-~~~-~~~~~pI~s~~Dl-kG 138 (301)
T 2pfz_A 62 GEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWP-PQG-IFANRDIKQVSDM-KG 138 (301)
T ss_dssp EEEEGGGGTTTCGGGTGGGSTTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECC-CCE-EEESSCCSSGGGG-TT
T ss_pred EechhhhccccCchhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccC-Ccc-eeeCCCCCChHHh-cC
Confidence 988742 5665332 366666553322 333 334 334578888 79
Q ss_pred CEEecCChHHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccc
Q 020472 189 SIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENV 250 (326)
Q Consensus 189 a~IGTSS~RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i 250 (326)
.+|.|.+.=-...++.+ ....+ ++. ...=...|.+|..||..-+...+.-.++.+-.
T Consensus 139 ~KiR~~~~~~~~~~~~l--Ga~pv-~~~--~~E~y~ALq~G~vDg~~~~~~~~~~~~~~ev~ 195 (301)
T 2pfz_A 139 LKWRAYSPVTAKIAELV--GAQPV-TVQ--QAELAQAMATGVIDSYMSSGSTGFDTKTYEYI 195 (301)
T ss_dssp CEEEESSHHHHHHHHHH--TCEEE-ECC--GGGHHHHHHTTSCSEEEECHHHHHHTTGGGTC
T ss_pred CEEecCChhHHHHHHHc--CCcce-ecC--HHHHHHHHhcCeeeEEecCccccccccHHHHh
Confidence 99998653223444444 45666 554 33344456689999998888887777765443
No 53
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=89.18 E-value=0.89 Score=39.31 Aligned_cols=140 Identities=13% Similarity=0.119 Sum_probs=74.9
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC-----ccCcccCCCCCEEecCChHHHHHHHhh
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-----AASLAELPAGSIVGTASLRRKSQILHR 205 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~-----~~~l~dLp~ga~IGTSS~RR~aQL~~~ 205 (326)
++.++|.+|++|+++-++---|. ..+.+.... +=-....+++.++ ..+++|| .|.+||+..---.......
T Consensus 74 ~~~~~l~~G~~D~~~~~~~~t~~-r~~~~~fs~--p~~~~~~~l~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~ 149 (271)
T 2iee_A 74 GMLTAVNSGQVDAAANDIDVTKD-REEKFAFST--PYKYSYGTAIVRKDDLSGIKTLKDL-KGKKAAGAATTVYMEVARK 149 (271)
T ss_dssp THHHHHHHTSSSEECSSCBCCHH-HHTTEEECC--CSEEEEEEEEECTTTGGGCSSGGGG-TTCEEESCTTSHHHHHHHH
T ss_pred HHHHHHHCCCcCEEEeCCcCChh-hccceEEee--cceeCCeEEEEECCCCCCCCCHHHh-CCCEEEEeCCccHHHHHHH
Confidence 46688999999999876421111 112222211 0011123444432 2457787 6888987543333333344
Q ss_pred CCCCEEEeccCCCHHHH--HhhhccCCccEEeeehh-h---hc-ccCCCccceeeecCCCCCCCcccceeeeEeecCchh
Q 020472 206 YPSLKVMENFRGNVQTR--LRKLNERVVQATLLALA-G---LK-RLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEK 278 (326)
Q Consensus 206 ~Pdl~v~~~iRGNV~TR--L~KL~~ge~DAIILA~A-G---L~-RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~ 278 (326)
++. +++ .. .|.++- ++.|.+|++| .++... . +. ..+ ...+ .+++. +.....-+++.+++++++
T Consensus 150 ~~~-~~~-~~-~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~-~~~~-~~~~~----~~~~~~~~~~~~~k~~~~ 219 (271)
T 2iee_A 150 YGA-KEV-IY-DNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFP-DLNI-TIHPD----IKYMPNKQALVMKKSNAA 219 (271)
T ss_dssp TTC-EEE-EC-SSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCT-TSSC-EECSS----CCEEEEEECCEEETTCHH
T ss_pred cCC-ceE-Ee-CChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCC-CCce-EEecC----CCcccceEEEEEcCCCHH
Confidence 554 776 55 466777 9999999999 555432 2 22 211 1122 11211 122345577888888876
Q ss_pred HHhhhh
Q 020472 279 MVPFTT 284 (326)
Q Consensus 279 ~~~lL~ 284 (326)
+.+.++
T Consensus 220 l~~~ln 225 (271)
T 2iee_A 220 LQKKMN 225 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 54
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=89.10 E-value=0.48 Score=43.93 Aligned_cols=192 Identities=14% Similarity=0.093 Sum_probs=108.0
Q ss_pred cCCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCc
Q 020472 63 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQID 142 (326)
Q Consensus 63 ~~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iD 142 (326)
...++|+||+-..+-|.. -+.|+..|++.+ + ++|++.+ .|=. ....||.+|+||
T Consensus 3 ~~~k~i~vgat~~P~aei-l~~vk~~l~k~G--i----~leiv~F---~Dy~----------------~pN~AL~~G~iD 56 (249)
T 4got_A 3 SGKKEIVVAATKTPHAEI-LKEAEPLLKEKG--Y----TLKVKVL---SDYK----------------MYNKALADKEVD 56 (249)
T ss_dssp CCTTEEEEEECTTTHHHH-HHHHHHHHHTTT--C----EEEEECC---SSTH----------------HHHHHHHTTSCS
T ss_pred CCCceEEEEeCCCCHHHH-HHHHHHHHHhcC--C----eEEEEEe---CCcc----------------chhHHHHcCCcc
Confidence 356789999999888864 467888888753 3 4777666 2332 478999999999
Q ss_pred EEE--eeC--CCCCCCCCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEecC----ChHHHHHHHhhC------C-
Q 020472 143 IAV--HSM--KDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTA----SLRRKSQILHRY------P- 207 (326)
Q Consensus 143 iAV--HSl--KDlPt~lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGTS----S~RR~aQL~~~~------P- 207 (326)
+-. |-. ..- ..-..|..++++.+-.-.-=.+-|++++++.+||+|++|+-. -.=|.-.|+... +
T Consensus 57 aN~fQH~pyL~~~-~k~~~g~~lv~v~~~~~~P~glYS~k~ksl~dl~~Ga~IaIPnDptN~~RaL~lL~~aGLIkLk~~ 135 (249)
T 4got_A 57 ANYFQHIPYLEQE-MKENTDYKLVNAGAVHLEPFGIYSKTYKSLKDLPDGATIILTNNVAEQGRMLAMLENAGLITLDSK 135 (249)
T ss_dssp EEEEEEHHHHHHH-HHHCTTCCEEEEEEEEECCCEEECSSCSSGGGCCTTCEEEEECCGGGHHHHHHHHHHTTSCEECTT
T ss_pred eeeccCHHHHHHH-HHhCCCCceEEeeeeeeccccccccCcCchhhcCCCCEEEEecCccchHHHHHHHHHCCCEEECCC
Confidence 987 421 100 001224445444333222234557888999999999999853 344666666533 1
Q ss_pred ----------------CCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccc-eeeecCCCCCCCcccceeee
Q 020472 208 ----------------SLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENV-TNILSVDDMLPAVAQGAIGI 270 (326)
Q Consensus 208 ----------------dl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i-~~~L~~~~~lPA~GQGaLAV 270 (326)
+++|+ ++-..-- -+-|++++.|+.++----...-|+...- .-.++... .. +=+.-+
T Consensus 136 ~~~~~~t~~DI~~Npk~l~~~-e~~aaql--~r~l~d~~vD~avin~n~a~~agl~p~~dal~~E~~~--~~--py~Nvi 208 (249)
T 4got_A 136 VETVDATLKDIKKNPKNLEFK-KVAPELT--AKAYENKEGDAVFINVNYAIQNKLNPKKDAIEVESTK--NN--PYANII 208 (249)
T ss_dssp SCGGGCCGGGEEECTTCCEEE-EECTTTH--HHHHHTTCSSEEEECHHHHHHTTCCHHHHCSEECCST--TC--CCCEEE
T ss_pred CCccccCcchhhhCCccccce-ecCHhHh--hhhcccccccEEEechhHHHHcCCChhhhhhcccCCC--CC--ceEEEE
Confidence 24455 4432211 2345677789888743222222332100 00111100 01 124456
Q ss_pred EeecCc---hhHHhhhhcccc
Q 020472 271 ACRSND---EKMVPFTTHSQA 288 (326)
Q Consensus 271 e~R~dD---~~~~~lL~~~~~ 288 (326)
.+|++| +++..+.+.+|+
T Consensus 209 vvr~~d~d~~~ik~lv~a~~s 229 (249)
T 4got_A 209 AVRKGEEDSAKIKALMEVLHS 229 (249)
T ss_dssp EEETTCTTSHHHHHHHHHHTS
T ss_pred EEcccccCCHHHHHHHHHHCC
Confidence 677644 566777776664
No 55
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=88.76 E-value=13 Score=33.52 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=94.6
Q ss_pred eEEEEeC---CCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 67 IIRIGTR---GSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 67 ~IrIGTR---~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
++|+++= ++.... .++..++.+++...+ ++++..... |- +|+ -.|+=+++..|.+|+
T Consensus 3 ~lk~~~~~~~~~~~~~-~~~~fa~~v~e~s~G-----~i~i~~~~~-g~---------Lg~----~~~~~e~v~~G~id~ 62 (301)
T 2pfy_A 3 SWTMTAEQPDANYLTQ-NARQFADEVKAATAG-----ALEIKVQSN-ST---------LLK----RPEVKRGVQQGVVQI 62 (301)
T ss_dssp EEEEECSSCTTSHHHH-HHHHHHHHHHHHTTT-----SEEEEEECT-TS---------SSC----GGGHHHHHHHTSSSE
T ss_pred EEEecccCCCCcchhH-HHHHHHHHHHHHcCC-----eEEEEEccc-hh---------hCC----hHHHHHHHHCCCeee
Confidence 5778773 455543 456788888876533 466655532 21 122 146669999999999
Q ss_pred EEeeCC------------CCCCCCC----------------------CCceeeeecCCCCCcceeec-cCccCcccCCCC
Q 020472 144 AVHSMK------------DVPTYLP----------------------EKTILPCNLQREDVRDAFIS-LSAASLAELPAG 188 (326)
Q Consensus 144 AVHSlK------------DlPt~lp----------------------~gL~iaAv~kReDprD~LV~-~~~~~l~dLp~g 188 (326)
++-+.- |+|--.+ .|+.+.+...-. ++. +.+ +.-.+++|| +|
T Consensus 63 ~~~~~~~~~~~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~-~~~-~~~~~pI~s~~Dl-kG 139 (301)
T 2pfy_A 63 GEVLVSALGNEDPLFEIDSVPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWP-PQG-IYTKKPVAALADL-KG 139 (301)
T ss_dssp EEEEGGGGTTTCGGGGGGGSTTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECC-CCE-EEESSCCSSGGGG-TT
T ss_pred ehhhhhhhhccCcccccccCCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCC-Ccc-eecCCCCCCHHHh-CC
Confidence 988742 5665432 366666543322 333 334 334578888 79
Q ss_pred CEEecCChHHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccc
Q 020472 189 SIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENV 250 (326)
Q Consensus 189 a~IGTSS~RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i 250 (326)
.+|.|.+.=-...++.+ ....+ ++. ...=..-|.+|..||..-....+.-.++.+-.
T Consensus 140 ~KiR~~~~~~~~~~~~l--Ga~pv-~~~--~~E~y~ALq~G~vDg~~~~~~~~~~~~~~ev~ 196 (301)
T 2pfy_A 140 TRFRAYSASTSHMAALM--GAVPT-TVQ--TPEVPQAFSTGVIDAMLTSPATGVDSQAWDYV 196 (301)
T ss_dssp CEEEECSHHHHHHHHHT--TSEEE-ECC--GGGHHHHHHTTSCSBEEECHHHHHHTTGGGTC
T ss_pred CEEeecChhHHHHHHHc--CCcce-ecc--HHHHHHHHhcceeeeEecCccccccccHHHHh
Confidence 99998653223344443 46666 664 23333445689999998888877777765433
No 56
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=88.00 E-value=1.1 Score=37.07 Aligned_cols=186 Identities=12% Similarity=0.080 Sum_probs=93.1
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++||||+=.+. +..---.+...+++.||++. +++... + +.++.++|.+|++|+
T Consensus 12 ~~g~lrIg~~~~~-~~~~l~~~l~~f~~~~P~v~----l~l~~~----~----------------~~~~~~~l~~g~~Dl 66 (228)
T 2fyi_A 12 TSGVLTIATTHTQ-ARYSLPEVIKAFRELFPEVR----LELIQG----T----------------PQEIATLLQNGEADI 66 (228)
T ss_dssp CCEEEEEEECHHH-HHHTHHHHHHHHHHHCTTEE----EEEEEC----C----------------HHHHHHHHHHTSCSE
T ss_pred CcceEEEeeccch-HHHHHHHHHHHHHHHCCCcE----EEEEeC----C----------------HHHHHHHHHcCCccE
Confidence 3578999996653 44445567778888999752 444221 1 247889999999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC-------ccCcccCCCCCEEecC---ChHHH--HHHHhhCCCCEE
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-------AASLAELPAGSIVGTA---SLRRK--SQILHRYPSLKV 211 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~-------~~~l~dLp~ga~IGTS---S~RR~--aQL~~~~Pdl~v 211 (326)
++-.. +...++++....+ ..++.-+++.++ ..+++||..-..|..+ ..|+. ..+....-..++
T Consensus 67 ~i~~~---~~~~~~~l~~~~l--~~~~~~~v~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (228)
T 2fyi_A 67 GIASE---RLSNDPQLVAFPW--FRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADI 141 (228)
T ss_dssp EEESS---SSTTCTTEEEEEE--EEECEEEEEETTCGGGTSSSCCHHHHTTSCEEEECTTSTTHHHHHHHHHHTTCCCCE
T ss_pred EEEec---ccCCCCCceEEEe--eecceEEEecCCCCccccCccCHHHHcCCCeEEecCCccHHHHHHHHHHHcCCCcce
Confidence 99752 1112445543221 112222222222 1234555544555432 23332 122332222333
Q ss_pred EeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCc---hhHHhhhhcc
Q 020472 212 MENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND---EKMVPFTTHS 286 (326)
Q Consensus 212 ~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD---~~~~~lL~~~ 286 (326)
. -.-.|+++-+.-+.+|.. -.+++....... ....+ ..++.+...+ .-.+.+.++++. +.+..+++.+
T Consensus 142 ~-~~~~~~~~~~~lv~~G~G-ia~lp~~~~~~~-~~~~l-~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~f~~~l 212 (228)
T 2fyi_A 142 V-LSAQDSDVIKTYVALGLG-IGLVAEQSSGEQ-EEENL-IRLDTRHLFD---ANTVWLGLKRGQLQRNYVWRFLELC 212 (228)
T ss_dssp E-EEESSHHHHHHHHHHTSC-EEEEEGGGGSTT-CCTTE-EEECCTTTSC---CEEEEEEEETTCCBCHHHHHHHHHH
T ss_pred E-EEeCCHHHHHHHHHhCCC-EEEeehHhhhhc-ccCCe-EEEECCCccc---ceEEEEEEeCCCcCCHHHHHHHHHH
Confidence 3 234688988888888743 334554333221 12222 2333332222 234666776653 2344444444
No 57
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=87.89 E-value=7.6 Score=31.09 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=74.7
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
.++|+||+-.+.-.. ---.+...+++.||++. +++... + ..++.++|.+|++|+|
T Consensus 4 ~g~l~Ig~~~~~~~~-~l~~~l~~f~~~~P~i~----i~l~~~----~----------------~~~l~~~l~~g~~Dl~ 58 (209)
T 2ql3_A 4 AGPIAVGCYPALGPT-ILPSMLYAFTAEYPRAS----VEFRED----T----------------QNRLRTQLEGGELDVA 58 (209)
T ss_dssp CEEEEEEECGGGTTT-THHHHHHHHHHHCTTEE----EEEEEC----C----------------HHHHHHHHHTTSCSEE
T ss_pred ceeEEEeechhhhhh-hHHHHHHHHHHHCCCce----EEEEEC----c----------------HHHHHHHHHcCCccEE
Confidence 467999987764332 23345667788899752 444321 1 2478899999999999
Q ss_pred EeeCCCCCCCCCCCceeeeecCCCCCcceeeccC--------ccCcccCCCCCEEecC--ChHHH-HH-HHhh--CCCCE
Q 020472 145 VHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS--------AASLAELPAGSIVGTA--SLRRK-SQ-ILHR--YPSLK 210 (326)
Q Consensus 145 VHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~--------~~~l~dLp~ga~IGTS--S~RR~-aQ-L~~~--~Pdl~ 210 (326)
+-.... .++++...-+. .++--+++.++ ..+++||..-..|..+ ..|+. .+ +... .|+..
T Consensus 59 i~~~~~----~~~~l~~~~l~--~~~~~~v~~~~hpl~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 132 (209)
T 2ql3_A 59 IVYDLD----LSPEWQTVPLM--TREPMVVLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCREAGFAPRVA 132 (209)
T ss_dssp EEESSS----CCTTEEEEEEE--EECCEEEEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHHHHTCCCCEE
T ss_pred EEecCC----CCCCceEEEee--cCceEEEEeCCCccccCCCCcCHHHHhCCCEEeeCChhHHHHHHHHHHHcCCCCceE
Confidence 976421 23455422211 12222222221 2345666655666543 23332 12 2222 34433
Q ss_pred EEeccCCCHHHHHhhhccCCccEEe
Q 020472 211 VMENFRGNVQTRLRKLNERVVQATL 235 (326)
Q Consensus 211 v~~~iRGNV~TRL~KL~~ge~DAII 235 (326)
+ .-.|+++-+.-+..|..=+++
T Consensus 133 ~---~~~~~~~~~~~v~~g~Gi~~l 154 (209)
T 2ql3_A 133 Y---RTANFETARAFVGRGLGWTLL 154 (209)
T ss_dssp E---EESCHHHHHHHHHHTSCBEEE
T ss_pred E---EECCHHHHHHHHHcCCeEEEe
Confidence 3 335889988888888544443
No 58
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=86.96 E-value=1.4 Score=40.78 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=82.6
Q ss_pred cCCceEEEEeCCCH--HHHH-HHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcC
Q 020472 63 TKVAIIRIGTRGSP--LALA-QAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINS 139 (326)
Q Consensus 63 ~~~~~IrIGTR~S~--LAla-Qa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g 139 (326)
...++|+||.=.+. -.+. +-..+.+.|.+.. ++ +++++...+ -.++.++|.+|
T Consensus 11 ~~~~~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~l-G~----~ve~~~~~~-------------------~~~~i~aL~~G 66 (321)
T 3p7i_A 11 EQEKALNFGIISTESQQNLKPQWTPFLQDMEKKL-GV----KVNAFFAPD-------------------YAGIIQGMRFN 66 (321)
T ss_dssp ---CCEEEEECCSSCHHHHHHHHHHHHHHHHHHH-TS----CEEEECCSS-------------------HHHHHHHHHTT
T ss_pred hcCCcEEEEEecCCCHHHHHHHHHHHHHHHHHHH-CC----CEEEEecCC-------------------HHHHHHHHHcC
Confidence 34567888876543 3332 2234666666543 12 455543211 13678999999
Q ss_pred CCcEEEeeCCC-CCCCCCCCceeeeecC--CCCCcc--eeeccC---ccCcccCC---CCCEEec-----CChHHHHH--
Q 020472 140 QIDIAVHSMKD-VPTYLPEKTILPCNLQ--REDVRD--AFISLS---AASLAELP---AGSIVGT-----ASLRRKSQ-- 201 (326)
Q Consensus 140 ~iDiAVHSlKD-lPt~lp~gL~iaAv~k--ReDprD--~LV~~~---~~~l~dLp---~ga~IGT-----SS~RR~aQ-- 201 (326)
++|+++-+... +......+..+.+.+. ..+|.. +||.++ .++++||- +|-+||. +|-.-...
T Consensus 67 ~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds~i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~ 146 (321)
T 3p7i_A 67 KVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYY 146 (321)
T ss_dssp SCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHH
T ss_pred CCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCCCCCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHH
Confidence 99999854210 1111123455444432 223332 566553 34677871 4567762 22111111
Q ss_pred H-Hhh--CCC-CEEEeccCCCHHHHHhhhccCCccEEeeehhhhccc
Q 020472 202 I-LHR--YPS-LKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRL 244 (326)
Q Consensus 202 L-~~~--~Pd-l~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RL 244 (326)
+ ... .|+ ++.+ ..|+-+.-+.-|.+|++|+.+.....+..+
T Consensus 147 l~~~~Gi~~~~~~~v--~~~~~~~a~~al~~G~vDa~~~~~~~~~~~ 191 (321)
T 3p7i_A 147 VFAKNNISASDFKRT--VNAGHETNALAVANKQVDVATNNTENLDKL 191 (321)
T ss_dssp TTGGGTCCGGGSSEE--EECCHHHHHHHHHTTSSSEEEEEHHHHHTH
T ss_pred HHHHcCCChhHceee--ecCCHHHHHHHHHCCCceEEEechHHHHHH
Confidence 2 222 122 4444 368888889999999999999876554443
No 59
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=86.70 E-value=1.3 Score=36.91 Aligned_cols=136 Identities=14% Similarity=0.133 Sum_probs=74.2
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+=.+. +..---.+...+++.||++. +++... + +.++.+.|.+|++|+
T Consensus 25 ~~g~l~Ig~~~~~-~~~~l~~~l~~f~~~~P~i~----l~i~~~----~----------------~~~~~~~L~~g~~Dl 79 (238)
T 3onm_A 25 MEGSLIIGASDDT-ADTLLPFLLNRVATLYPRLA----IDVRVK----R----------------SPFIADMLSSGEVDL 79 (238)
T ss_dssp --CCEEEEECHHH-HTTHHHHHHHHHHHHCTTCC----EEEEEC----C----------------HHHHHHHHHHTSCSE
T ss_pred CceeEEEeccchh-hHHHHHHHHHHHHHHCCCcE----EEEEEC----C----------------HHHHHHHHHCCCccE
Confidence 4578999997664 44455567778888899873 555432 1 357899999999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEec--CCh-HHH--HHHHhhCCCCEEEeccCCC
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGT--ASL-RRK--SQILHRYPSLKVMENFRGN 218 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGT--SS~-RR~--aQL~~~~Pdl~v~~~iRGN 218 (326)
++-... ++++... .-..++- ++|+.+...+.....-..|.. .+. |+. ..+.......++. -.=.|
T Consensus 80 ~i~~~~------~~~~~~~--~l~~~~~-~~v~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (238)
T 3onm_A 80 AITTAK------VDSHPHV--ILRTSPT-LWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIA-YVASS 149 (238)
T ss_dssp EEECSC------C-CCCEE--EEEEECE-EEEEETTCCCCTTSCEEEEEESSSCHHHHHHHHHHHHTTCCEEEE-EEESS
T ss_pred EEEecC------CCCcceE--EeecCCE-EEEEcCCCCcccCCCcceEECCCchhHHHHHHHHHHHCCCCeEEE-EEeCC
Confidence 998653 2233322 2222332 333332222222211112222 222 221 2233333444544 34578
Q ss_pred HHHHHhhhccCCccEE
Q 020472 219 VQTRLRKLNERVVQAT 234 (326)
Q Consensus 219 V~TRL~KL~~ge~DAI 234 (326)
..+-+.-+.+|..=|+
T Consensus 150 ~~~~~~~v~~g~Giai 165 (238)
T 3onm_A 150 LSAIRAAVRAGLGVTA 165 (238)
T ss_dssp HHHHHHHHHTTSCBEE
T ss_pred HHHHHHHHHcCCeEEE
Confidence 9999998888854343
No 60
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=86.26 E-value=2.9 Score=33.96 Aligned_cols=186 Identities=10% Similarity=0.021 Sum_probs=93.4
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-.+....+ .-.+...+++.+|++. +++.... +.++.++|.+|++|+
T Consensus 9 ~~g~l~Ig~~~~~~~~~-l~~~l~~~~~~~P~v~----i~~~~~~--------------------~~~~~~~l~~g~~Dl 63 (232)
T 3ho7_A 9 LTGRLNIAVLPTIAPYL-LPRVFPIWKKELAGLE----IHVSEMQ--------------------TSRCLASLLSGEIDM 63 (232)
T ss_dssp -CEEEEEEECTTTHHHH-HHHHHHHHHHHSTTEE----EEEEECC--------------------HHHHHHHHHHTSCSE
T ss_pred cceeEEEEeccccchhh-hHHHHHHHHHHCCCcE----EEEEeCC--------------------HHHHHHHHHcCCCCE
Confidence 45789999998865553 4455666777899752 4443221 357889999999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC-------ccCcccCCCCCEEecC---ChHH-HHHHHh-hCCC-CE
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-------AASLAELPAGSIVGTA---SLRR-KSQILH-RYPS-LK 210 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~-------~~~l~dLp~ga~IGTS---S~RR-~aQL~~-~~Pd-l~ 210 (326)
++-....- ++++....+. .++--+++.++ ..+++||..-..|..+ ..|+ ..++.. .... .+
T Consensus 64 ~i~~~~~~----~~~l~~~~l~--~~~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (232)
T 3ho7_A 64 AIIASKAE----TEGLEDDLLY--YEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQ 137 (232)
T ss_dssp EEESSCCC----CTTEEEEEEE--EEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSS
T ss_pred EEEcCCCC----CCCeEEEEec--ccCEEEEEcCCCccccCCCcCHHHhcCCCEEEecCCCcHHHHHHHHHHHcCCCcCc
Confidence 99865322 2455433222 12222222222 1245555443333321 1222 222222 2211 33
Q ss_pred EEeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCc---hhHHhhhhcc
Q 020472 211 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND---EKMVPFTTHS 286 (326)
Q Consensus 211 v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD---~~~~~lL~~~ 286 (326)
+. -.-.|.++-+.-+.+|..=+ +++..-....--...+ ..++.+.. .-.--+.+.++++. +.+..+++.+
T Consensus 138 ~~-~~~~~~~~~~~~v~~g~gi~-~~p~~~~~~~~~~~~l-~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~l 210 (232)
T 3ho7_A 138 TA-YSGGSMEAFMRLVESGQGIT-FIPQLTVEQLSPSQKE-LVRPFGMP---RPVREVRLAVRQDYSRRKLREQLIGLL 210 (232)
T ss_dssp EE-EESCCHHHHHHHHHTTCCEE-EEEGGGGGGSCHHHHT-TEECBCSS---EEEEEEEEEEETTCSCHHHHHHHHHHH
T ss_pred ee-EEeCCHHHHHHHHHcCCcEE-EecHHHhhhhcccCce-EEEEccCC---CceEEEEEEEeCCCccCHHHHHHHHHH
Confidence 43 34578999999888885433 4444333322111111 12222221 22345667777654 3444444444
No 61
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=85.76 E-value=0.48 Score=40.64 Aligned_cols=140 Identities=12% Similarity=0.044 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeecc-----CccCcccCCCCCEEecCChH-HHHHHH
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISL-----SAASLAELPAGSIVGTASLR-RKSQIL 203 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~-----~~~~l~dLp~ga~IGTSS~R-R~aQL~ 203 (326)
.++.++|.+|++|+++-++-.-|.. .+.+.... +=-....+++.+ ...+++|| .|.+||+..-- -...+.
T Consensus 78 ~~~~~~l~~g~~D~~~~~~~~t~~r-~~~~~fs~--p~~~~~~~~~~~~~~~~~i~~~~dL-~g~~v~v~~g~~~~~~l~ 153 (259)
T 4dz1_A 78 DGMLGAVASGQADVAFSGISITDKR-KKVIDFSE--PYYINSFYLVSMANHKITLNNLNEL-NKYSIGYPRGMAYSDLIK 153 (259)
T ss_dssp HHHHHHHHHTSSSEEEEEEECCHHH-HTTEEECC--CSEEEEEEEEEETTSCCCCCSGGGG-GGSCEEEETTSTHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCcCCHHH-hhcccccc--chhhCceEEEEEcCCCCCCCCHHHh-CCCEEEEeCCcHHHHHHH
Confidence 3567899999999987653222211 11111110 000111223332 12356777 46677653211 134455
Q ss_pred hhCCC------CEEEeccCCCHHHHHhhhccCCccEEeeehhhhccc----CCCccceeeecCCCCCCCcccceeeeEee
Q 020472 204 HRYPS------LKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRL----SMTENVTNILSVDDMLPAVAQGAIGIACR 273 (326)
Q Consensus 204 ~~~Pd------l~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RL----gl~~~i~~~L~~~~~lPA~GQGaLAVe~R 273 (326)
..+|+ .+++ .. .|.+.-++.|.+|++||++....-+..+ +....+ ... .....-+++-++
T Consensus 154 ~~~~~~g~~~~~~~~-~~-~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~ 223 (259)
T 4dz1_A 154 NDLEPKGYYSLSKVK-LY-PTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIES--RYV------FKNVDQLGIAFK 223 (259)
T ss_dssp HHTGGGTSCCGGGCE-EE-SSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEE--EEE------EEEEEEEEEEEE
T ss_pred HhcccccccccceeE-ec-CCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEe--ecc------cCCCceEEEEEe
Confidence 56665 6666 44 4889999999999999999976654332 222111 110 112344688889
Q ss_pred cCchhHHhhhh
Q 020472 274 SNDEKMVPFTT 284 (326)
Q Consensus 274 ~dD~~~~~lL~ 284 (326)
+++ ++.+.++
T Consensus 224 k~~-~l~~~ln 233 (259)
T 4dz1_A 224 KGS-PVRDDFN 233 (259)
T ss_dssp TTC-HHHHHHH
T ss_pred CCh-HHHHHHH
Confidence 988 4555444
No 62
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=85.59 E-value=1.6 Score=38.59 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=40.9
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
.++|+||+- +.++..-.-.+...+.+.||++. +++.. ++. .++.+.|.+|++|+|
T Consensus 104 ~~~l~Ig~~-~~~~~~~l~~~l~~f~~~~P~v~----l~l~~----~~~----------------~~~~~~l~~g~~Dl~ 158 (315)
T 1uth_A 104 TRTFNLAMT-DIGEMYFMPPLMEALAQRAPHIQ----ISTLR----PNA----------------GNLKEDMESGAVDLA 158 (315)
T ss_dssp CCEEEEECC-HHHHHHHHHHHHHHHHHHCTTCE----EEEEC----TTS----------------SCHHHHHHHTSCCEE
T ss_pred ceEEEEEec-hHHHHHHHHHHHHHHHHHCCCcE----EEEEe----CCc----------------ccHHHHHHCCCCCEE
Confidence 468999994 34555555667777888999862 44322 111 257789999999999
Q ss_pred EeeC
Q 020472 145 VHSM 148 (326)
Q Consensus 145 VHSl 148 (326)
+...
T Consensus 159 i~~~ 162 (315)
T 1uth_A 159 LGLL 162 (315)
T ss_dssp EECC
T ss_pred EecC
Confidence 9764
No 63
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=85.43 E-value=3 Score=36.72 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=56.2
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCC--ceeeeecCCCCCcceeeccC---ccCcccCCCCCEEecCChH----HH-H
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEK--TILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTASLR----RK-S 200 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~g--L~iaAv~kReDprD~LV~~~---~~~l~dLp~ga~IGTSS~R----R~-a 200 (326)
++-++|.+|++|+++-+.-.+-.....| +...+..-..++ ..+++++ .++++|| +|.+||++..- -- .
T Consensus 46 ~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~s~i~s~~DL-~Gk~i~~~~~~~~~~~~~~ 123 (302)
T 3ix1_A 46 DPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPL-NHVMFLAEQDFDSPADL-VGLTVGYPGIPVNEPILKT 123 (302)
T ss_dssp HHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCC-EEEEEEGGGCCSSGGGG-TTSEEEECSCTTHHHHHHH
T ss_pred hHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCC-EEEEEECCCCCCChHHc-CCCEEEeCCCcchHHHHHH
Confidence 5679999999999987621100011233 333333333333 5555543 3567888 58899875421 11 1
Q ss_pred HHHhh--C-CCCEEEeccCCCHHHHHhhhccCCccEEe
Q 020472 201 QILHR--Y-PSLKVMENFRGNVQTRLRKLNERVVQATL 235 (326)
Q Consensus 201 QL~~~--~-Pdl~v~~~iRGNV~TRL~KL~~ge~DAII 235 (326)
.++.. . .+++++ ++..++ +.-|.+|+.||++
T Consensus 124 ~l~~~Gl~~~~v~~~-~~~~~~---~~al~~G~vDa~~ 157 (302)
T 3ix1_A 124 MVEAAGGDYEQVHLM-DVGFEL---GASIVSGRADAVV 157 (302)
T ss_dssp HHHHTTCCGGGCEEE-ECTTCH---HHHHHHSSSSEEE
T ss_pred HHHHcCCCHHHeEEE-ecCccH---HHHHhCCCCCEEE
Confidence 22221 1 247888 775554 3456689999987
No 64
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=85.07 E-value=0.33 Score=44.36 Aligned_cols=167 Identities=16% Similarity=0.100 Sum_probs=88.0
Q ss_pred HHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEEEeeCCCCCCCC-CCCceee-e
Q 020472 86 RNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYL-PEKTILP-C 163 (326)
Q Consensus 86 ~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiAVHSlKDlPt~l-p~gL~ia-A 163 (326)
+.-|.+.+-+ .++++..+.+.+-+ =.+|.+|++|+||-|+===|..+ ..++.++ -
T Consensus 34 atgl~~~f~g----i~~~i~~mrg~~~R-------------------I~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vd 90 (231)
T 2ozz_A 34 ASGLKAQFDG----IPFYYAHMRGADIR-------------------VECLLNGVYDMAVVSRLAAESYLSQNNLCIALE 90 (231)
T ss_dssp HHHHHHTTTT----SCEEEEECSCHHHH-------------------HHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHhcC----CcEEEEEccChHHH-------------------HHHHHcCCCCEEEEecccchhhhcccCeEEEEE
Confidence 3445555533 35888777554333 38999999999999851100000 0112221 1
Q ss_pred ecCCCC-CcceeeccCccCcccCCCCCEEecC--ChHHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEee----
Q 020472 164 NLQRED-VRDAFISLSAASLAELPAGSIVGTA--SLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLL---- 236 (326)
Q Consensus 164 v~kReD-prD~LV~~~~~~l~dLp~ga~IGTS--S~RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIIL---- 236 (326)
+.+--- ....+|.++.. -..+ .+||-- |.--..--...+++.+|+ -+.-+..+=+..|.+|+.||+|+
T Consensus 91 Fg~~yYv~~h~li~~~~~-~~~i---krVGvd~gS~dq~~lt~~~~~g~~Ve-~ve~~y~~~i~~L~~G~IDA~Iwn~d~ 165 (231)
T 2ozz_A 91 LGPHTYVGEHQLICRKGE-SGNV---KRVGLDSRSADQKIMTDVFFGDSDVE-RVDLSYHESLQRIVKGDVDAVIWNVVA 165 (231)
T ss_dssp CCTTSSSCCEEEEEETTC-GGGC---CEEEECTTCHHHHHHHHHHHTTSCCE-EEECCHHHHHHHHHHTSCCEEEEEC-C
T ss_pred cCCCccccCeEEEEeCCC-cccc---EEEEecCCChhHHHHHhhhcCCCeEE-EEECCHHHHHHHHHcCCccEEEEcCcc
Confidence 111111 22335544321 1112 688853 333222222334777765 55567899999999999999999
Q ss_pred ehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCchhHHhhhhcc
Q 020472 237 ALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHS 286 (326)
Q Consensus 237 A~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD~~~~~lL~~~ 286 (326)
+.|. ...++. ...+.........+..+ |.+|++|+++.++|+..
T Consensus 166 ~~a~-~~~~l~---~~~l~~~~~~~~~~eav--I~v~k~n~~L~~~ln~~ 209 (231)
T 2ozz_A 166 ENEL-TMLGLE---ATPLTDDPRFLQATEAV--VLTRVDDYPMQQLLRAV 209 (231)
T ss_dssp HHHH-HHTTEE---EEECCSCHHHHHTTCEE--EEEETTCHHHHHHHHHH
T ss_pred hhhh-cCCCcc---eeccccccccccCCceE--EEEECCCHHHHHHHHHH
Confidence 3333 121111 11121111112233333 67799999999988853
No 65
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=84.96 E-value=12 Score=29.89 Aligned_cols=137 Identities=10% Similarity=0.075 Sum_probs=76.6
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+=.|....+=. .+...+++.||++. +++.. |+ +.++.++|.+|++|+
T Consensus 6 ~~g~l~Ig~~~~~~~~~l~-~~l~~f~~~~P~i~----i~i~~----~~----------------~~~~~~~l~~g~~Di 60 (222)
T 4ab5_A 6 EAGELRIAVECHTCFDWLM-PAMGEFRPMWPQVE----LDIVS----GF----------------QADPVGLLLQHRADL 60 (222)
T ss_dssp TTEEEEEECCCTTTHHHHH-HHHHHHHHHSTTEE----EEEEC----CC----------------CSCTHHHHHTTSCSE
T ss_pred ccceEEEEEehHHHHHHHH-HHHHHHHHHCCCcE----EEEec----CC----------------HHHHHHHHHcCCcCE
Confidence 4568999998876554433 46677788899752 44432 11 135779999999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc-------cCcccCCCCCEEecC---ChHH-HHH-HHh--hCCCC
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-------ASLAELPAGSIVGTA---SLRR-KSQ-ILH--RYPSL 209 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~-------~~l~dLp~ga~IGTS---S~RR-~aQ-L~~--~~Pdl 209 (326)
++-.... .++++....+. .++--+++.+++ .++++|..-..|..+ ..|+ ..+ +.. ..|+
T Consensus 61 ~i~~~~~----~~~~~~~~~l~--~~~~~~v~~~~~pl~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 133 (222)
T 4ab5_A 61 AIVSEAE----KQNGISFQPLF--AYEMVGICAPDHPLAAKNVWTAEDFIGETLITYPVPDEMLDLPKKILIPKNINPP- 133 (222)
T ss_dssp EEESCCC----CCTTEEEEEEE--EEEEEEEECTTSGGGGCSEECGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCC-
T ss_pred EEecCCC----CcCCeEEEEee--cCcEEEEecCCChhhccCCcCHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCC-
Confidence 9986432 24455432222 222222222221 246667655555532 2232 112 122 2344
Q ss_pred EEEeccCCCHHHHHhhhccCCccEEe
Q 020472 210 KVMENFRGNVQTRLRKLNERVVQATL 235 (326)
Q Consensus 210 ~v~~~iRGNV~TRL~KL~~ge~DAII 235 (326)
+. .-.|.++-+.-+.+|..=+++
T Consensus 134 -~~--~~~~~~~~~~~v~~g~gi~~~ 156 (222)
T 4ab5_A 134 -RR--HSELTIAIIQLVASRRGIAAL 156 (222)
T ss_dssp -EE--ECSCHHHHHHHHHTTSCBEEE
T ss_pred -eE--ecCCHHHHHHHHHcCCeEEEc
Confidence 22 356889988888888654443
No 66
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=84.49 E-value=5.7 Score=33.63 Aligned_cols=59 Identities=20% Similarity=0.114 Sum_probs=40.4
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-.+.- . --..+...+++.||++. +++... + +.++.+.|.+|++|+
T Consensus 26 ~~g~l~Ig~~~~~~-~-~l~~~l~~f~~~~P~i~----v~i~~~----~----------------~~~~~~~l~~g~~Di 79 (290)
T 1twy_A 26 QASEITISGSTSVA-R-IMDVLAEKYNQQHPETY----VAVQGV----G----------------STAGISLLKKGVADI 79 (290)
T ss_dssp --CEEEEEECHHHH-H-HHHHHHHHHHHHCTTCE----EEEEES----C----------------HHHHHHHHHTTSCSE
T ss_pred cCCCEEEecCcchH-H-HHHHHHHHHHhhCCCce----EEEEec----C----------------cHHHHHHHhcCCCcE
Confidence 35789999977644 2 34556777888899762 544321 1 246788999999999
Q ss_pred EEeeC
Q 020472 144 AVHSM 148 (326)
Q Consensus 144 AVHSl 148 (326)
++-..
T Consensus 80 ~i~~~ 84 (290)
T 1twy_A 80 AMTSR 84 (290)
T ss_dssp EEESS
T ss_pred EEecC
Confidence 99754
No 67
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=82.16 E-value=0.58 Score=41.32 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCC----------CCCCCceeeeecCCCCCcceeeccCccCcccCCCCCEEec---CChH
Q 020472 131 EIDEALINSQIDIAVHSMKDVPT----------YLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGT---ASLR 197 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt----------~lp~gL~iaAv~kReDprD~LV~~~~~~l~dLp~ga~IGT---SS~R 197 (326)
++-.+|.+|++|+++.++---|. ....+..+. .++.++-.-+--..++++++|..|.+||+ +|.
T Consensus 96 ~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~--~~~~~~~~~~~dl~~~~~~~l~~~~~vg~v~~~s~- 172 (284)
T 2a5s_A 96 GMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVM--VSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGST- 172 (284)
T ss_dssp HHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEE--EETTCCCCSTTSHHHHSGGGSSSCCCEECCTTSHH-
T ss_pred HHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcCEEEE--EECCcccccccccccCChhHcCCCceEEEEeCCch-
Confidence 57789999999999976432211 111122211 11111100000001233455545778884 333
Q ss_pred HHHHHHhhCCCC--EEEeccC-CCHHHHHhhhccCCccEEeeehhhhcc
Q 020472 198 RKSQILHRYPSL--KVMENFR-GNVQTRLRKLNERVVQATLLALAGLKR 243 (326)
Q Consensus 198 R~aQL~~~~Pdl--~v~~~iR-GNV~TRL~KL~~ge~DAIILA~AGL~R 243 (326)
...+...+|+. .++ ... .|.+.-+++|.+|++||+|.-..-+..
T Consensus 173 -~~~l~~~~~~~~~~i~-~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~ 219 (284)
T 2a5s_A 173 -ERNIRNNYPYMHQYMT-RFNQRGVEDALVSLKTGKLDAFIYDAAVLNY 219 (284)
T ss_dssp -HHHHHTTCHHHHHHHG-GGCCSSHHHHHHHHHTTSCSEEEEEHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH-hccCCCHHHHHHHHHcCCeeEEEEchHHHHH
Confidence 44566667764 233 332 689999999999999999997665443
No 68
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=82.13 E-value=16 Score=32.02 Aligned_cols=144 Identities=14% Similarity=0.123 Sum_probs=76.5
Q ss_pred CceEEEEeCCCHHH-HHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 65 VAIIRIGTRGSPLA-LAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 65 ~~~IrIGTR~S~LA-laQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
.++|+||+=.+--. ..-++.+.+.+.+.+|++ ++++ ..+.| ..++-++|.+|++|+
T Consensus 18 ~~~i~i~~~~~~g~~~~~~~~la~~~~~~~~g~----~v~v--~~~~~-----------------~~~~~~~l~~g~~Dl 74 (314)
T 1us5_A 18 QEFITIGSGSTTGVYFPVATGIAKLVNDANVGI----RANA--RSTGG-----------------SVANINAINAGEFEM 74 (314)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSE----EEEE--ECCSC-----------------HHHHHHHHHTTSCSE
T ss_pred CceEEEEeCCCCchhHHHHHHHHHHHHhcCCCc----eEEE--EecCc-----------------HHHHHHHHHcCCCcE
Confidence 36799998632111 113345666676656653 2433 32211 235668999999999
Q ss_pred EEeeC--------CCC--CCC--CCCCceeeeecCCCCCcceeeccC---ccCcccCCCCCEEecC---C-hHHH-HHHH
Q 020472 144 AVHSM--------KDV--PTY--LPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTA---S-LRRK-SQIL 203 (326)
Q Consensus 144 AVHSl--------KDl--Pt~--lp~gL~iaAv~kReDprD~LV~~~---~~~l~dLp~ga~IGTS---S-~RR~-aQL~ 203 (326)
++-+. +.. |-. ..+++...+..-+ ++ -++|.+. .++++||. |.+|+++ | .+.. .++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~-~~lvv~~~~~i~sl~dL~-g~~i~~~~~gs~~~~~~~~~l 151 (314)
T 1us5_A 75 ALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALYP-EV-VHVVARKDAGIRTVADLK-GKRVVVGDVGSGTEQNARQIL 151 (314)
T ss_dssp EEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEEE-EE-EEEEEETTSSCSSGGGGT-TSEEECCCTTCHHHHHHHHHH
T ss_pred EEEccHhHHHHhcCCCCCCCCCCCccchhehhhcCc-ce-EEEEEECCCCCCcHHHhC-CCEeecCCCCchHHHHHHHHH
Confidence 97542 111 211 1245655433322 22 3455542 35788885 5677662 2 2322 1222
Q ss_pred h-h--CC-CC-EEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 204 H-R--YP-SL-KVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 204 ~-~--~P-dl-~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
. . .| ++ ++. . .| -..-+..|.+|+.|+.+..
T Consensus 152 ~~~G~~~~~v~~~~-~-~~-~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 152 EAYGLTFDDLGQAI-R-VS-ASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp HHTTCCGGGSSEEE-C-CC-HHHHHHHHHTTSCSEEEEE
T ss_pred HHcCCCHHHcCcee-c-CC-HHHHHHHHHcCCccEEEEc
Confidence 2 2 12 23 344 3 34 5677888999999999853
No 69
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=80.92 E-value=3.6 Score=32.81 Aligned_cols=138 Identities=12% Similarity=0.017 Sum_probs=71.3
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-.+. +..---.+...+++.||++. +++. + .|. +++ |.+|++|+
T Consensus 5 ~~g~l~Ig~~~~~-~~~~l~~~l~~f~~~~P~v~----l~i~---~-~~~------------------~~~-l~~g~~D~ 56 (213)
T 3hhf_B 5 PQGVLSVDSAMPM-VLHLLAPLAAKFNERYPHIR----LSLV---S-SEG------------------YIN-LIERKVDI 56 (213)
T ss_dssp CCEEEEEEECHHH-HHHTHHHHHHHHHHHCTTEE----EEEE---C-CST------------------THH-HHTTSSSE
T ss_pred CCceEEEecCHHH-HHHHHHHHHHHHHHHCCCcE----EEEE---e-CCc------------------HHH-HHhCCccE
Confidence 4568999997664 44455667788888899752 4444 2 221 333 89999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeecc-------CccCcccCCCCCEEecCC---hHHHHH--HHh--hCCCC
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISL-------SAASLAELPAGSIVGTAS---LRRKSQ--ILH--RYPSL 209 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~-------~~~~l~dLp~ga~IGTSS---~RR~aQ--L~~--~~Pdl 209 (326)
++-.... .++++..-.+. +++--+++.+ +..++++|..-..|..+. .++... +.. ..|+.
T Consensus 57 ~i~~~~~----~~~~~~~~~l~--~~~~~~v~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (213)
T 3hhf_B 57 ALRAGEL----DDSGLRARHLF--DSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISP 130 (213)
T ss_dssp EEECC------CCSSEEEEEEE--EECEEEEECHHHHHHHCCCSSGGGGGGSCBCEESSCGGGGEEEEECTTSCEEECCC
T ss_pred EEEEecC----CCccceEEeee--cceEEEEeCHHHHHhcCCCCCHHHhcCCCeEEecCCCCccchhhhhCCCccccccC
Confidence 9976421 14565433322 2222222222 123455654444443221 121100 000 11222
Q ss_pred EEEeccCCCHHHHHhhhccCCccEEeeehh
Q 020472 210 KVMENFRGNVQTRLRKLNERVVQATLLALA 239 (326)
Q Consensus 210 ~v~~~iRGNV~TRL~KL~~ge~DAIILA~A 239 (326)
.+ .=.|.++-+.-+.+|..=| +++..
T Consensus 131 ~~---~~~~~~~~~~~v~~g~Gi~-~lp~~ 156 (213)
T 3hhf_B 131 HF---TASSGEILRSLCLSGCGIV-CLSDF 156 (213)
T ss_dssp SS---EESSHHHHHHHHHTTSCBE-EEEHH
T ss_pred ce---eeCCHHHHHHHHHcCCcEE-EeeHH
Confidence 22 2368888888888886444 44443
No 70
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=80.53 E-value=2.5 Score=36.73 Aligned_cols=146 Identities=15% Similarity=0.012 Sum_probs=75.2
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+=.+ ++..-.-.+...+.+.||++. +++....+ .++.+.|.+|++|+
T Consensus 99 ~~~~l~Ig~~~~-~~~~~l~~~l~~f~~~~P~i~----i~l~~~~~--------------------~~~~~~l~~g~~Dl 153 (310)
T 2esn_A 99 SQRTFVFAATDY-TAFALLPPLMNRLQHSAPGVR----LRLVNAER--------------------KLSVEALASGRIDF 153 (310)
T ss_dssp CCCEEEEECCHH-HHHHHHHHHHHHHHHHSTTCE----EEEECCSS--------------------SCCHHHHHHTSSSE
T ss_pred cCceEEEEeChH-HHHHHHHHHHHHHHHHCCCeE----EEEEeCCc--------------------ccHHHHHHcCCCCE
Confidence 356899999654 455556667777888899862 44432211 24568899999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc------cCcccCCCCCEEecC---ChHH-HHH-HHhhCCCCEEE
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA------ASLAELPAGSIVGTA---SLRR-KSQ-ILHRYPSLKVM 212 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~------~~l~dLp~ga~IGTS---S~RR-~aQ-L~~~~Pdl~v~ 212 (326)
|+-..-+.|. .++++....+. .++--+++.+++ .+++||..-..|..+ ..|+ ..+ +....-..++.
T Consensus 154 ~i~~~~~~~~-~~~~l~~~~l~--~~~~~~v~~~~~pl~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 230 (310)
T 2esn_A 154 ALGYDEEHER-LPEGIQAHDWF--ADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVA 230 (310)
T ss_dssp EEECCSTTCC-CCTTEEEEEEE--EECEEEEEESSCTTCSSSCCHHHHHTSEEEEECTTCCSSCHHHHHHHHTTCCCEEE
T ss_pred EEecCccccc-CCcCcceeeee--ccceEEEEeCCCCCcCCCCCHHHHhcCCcEEEeCCCCcccHHHHHHHhCCCCeeEE
Confidence 9976200111 24555432222 122222222221 233444332333322 1222 222 23222233443
Q ss_pred eccCCCHHHHHhhhccCCccEEeeehh
Q 020472 213 ENFRGNVQTRLRKLNERVVQATLLALA 239 (326)
Q Consensus 213 ~~iRGNV~TRL~KL~~ge~DAIILA~A 239 (326)
-.-.|.++-+.-+.+|..=| +++..
T Consensus 231 -~~~~~~~~~~~~v~~g~Gia-~lp~~ 255 (310)
T 2esn_A 231 -VQLPTVLAALFLAGSTDFLL-TAPRH 255 (310)
T ss_dssp -EEESCHHHHHHHHHTSSCEE-EEEHH
T ss_pred -EeCCCHHHHHHHHhcCCeEE-EcHHH
Confidence 34468899888888885433 44443
No 71
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=80.14 E-value=2.8 Score=37.72 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=58.6
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCC---ceeeeecCCCCCcceeecc----CccCcccCCCCCEEecCC---hHHH-
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEK---TILPCNLQREDVRDAFISL----SAASLAELPAGSIVGTAS---LRRK- 199 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~g---L~iaAv~kReDprD~LV~~----~~~~l~dLp~ga~IGTSS---~RR~- 199 (326)
++-++|.+|++|+++-+.--+-.....| +.+++..-+......++.+ ..++++|| -+||+++ .--.
T Consensus 57 ~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~~ds~~i~s~~DL---K~i~~~~~gs~~~~~ 133 (321)
T 2x7q_A 57 RLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVSTGSNRDDVTDAKQL---KRIGVSRIGSGSYVM 133 (321)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEESSCTTCSSGGGC---CEEEESSTTSHHHHH
T ss_pred HHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEEECCCCCCCCChHHc---ceEEeeCCCcHHHHH
Confidence 3668999999999985431110001122 5555544433222245543 23578899 5888764 1111
Q ss_pred -HHH-Hh--hCCCCEEEeccCCCHHHHHhhhccC----CccEEee
Q 020472 200 -SQI-LH--RYPSLKVMENFRGNVQTRLRKLNER----VVQATLL 236 (326)
Q Consensus 200 -aQL-~~--~~Pdl~v~~~iRGNV~TRL~KL~~g----e~DAIIL 236 (326)
..+ +. +-|+++++ .+. +....+.-|.+| +.||++.
T Consensus 134 ~~~l~~~~Gl~~dv~~v-~~~-~~~~~~~al~~G~~~~~vDa~~~ 176 (321)
T 2x7q_A 134 SFVLAHQLGVPSFDQFQ-VLS-NFKNLRDSVNLKDGVEGSDAFMW 176 (321)
T ss_dssp HHHHHHHHTSCCCCEEE-ECC-SHHHHHHHHTTCTTSCCCSEEEE
T ss_pred HHHHHHhcCCCcceEEE-EcC-ChHHHHHHHHcCCCccceEEEEe
Confidence 122 22 22357887 664 678889999999 9999754
No 72
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=79.52 E-value=18 Score=33.16 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=75.5
Q ss_pred CceEEEEeCCCHH-HHHHHHHHHHHHHhh-CCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCc
Q 020472 65 VAIIRIGTRGSPL-ALAQAHETRNKLMAL-HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQID 142 (326)
Q Consensus 65 ~~~IrIGTR~S~L-AlaQa~~V~~~L~~~-~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iD 142 (326)
.++|+|+|=..-= --.-++.+.+.|.+. .+.. .++++...+.|.. +.-.+|.+|++|
T Consensus 31 ~~~i~i~~g~~gG~~~~~~~~la~~l~~~~~~~~----g~~v~v~~~~g~~-----------------~~i~~l~~g~~D 89 (327)
T 4ddd_A 31 REYILIGTGSMTGVYYPIGGSICRFIASDYGKDN----KIICSISSTTGSV-----------------YNLNSIRYSNMD 89 (327)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHHGGGT----SEEEEEECCCCHH-----------------HHHHHHHTTSCS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhccCCCC----CeEEEEEecCcHH-----------------HHHHHHHcCCCc
Confidence 4678998752210 011234455555554 1111 1455555544421 233578899999
Q ss_pred EEEeeC--------CCCCCC---CCCCceeeeecCCCCCcceeeccC---ccCcccCCCCCEEecCC----hHHHH-HH-
Q 020472 143 IAVHSM--------KDVPTY---LPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTAS----LRRKS-QI- 202 (326)
Q Consensus 143 iAVHSl--------KDlPt~---lp~gL~iaAv~kReDprD~LV~~~---~~~l~dLp~ga~IGTSS----~RR~a-QL- 202 (326)
+++-+. +..|-. ..+.+..++..-. ++. +||.++ .++++||. |-+|+.++ .+... ++
T Consensus 90 ~~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~~~-~~~-~lvv~~ds~i~sl~DL~-gk~v~~~~~Gs~~~~~~~~~l 166 (327)
T 4ddd_A 90 ISIVQSDLEYYAYNGLGFYEKMLPMDNLRMLASLHK-EYL-TIVVKKSSNISVIDDIK-GKRVNIGSPGTGVRVAMLKLL 166 (327)
T ss_dssp EEEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEEEE-EEE-EEEEETTSSCCSGGGGT-TSEEECCSTTSHHHHHHHHHH
T ss_pred EEEECcHHHHHHHhCcCcccccCCCcchhehhccCC-ccE-EEEEECCCCCCCHHHhC-CCEEecCCCCccHHHHHHHHH
Confidence 997653 111211 1244554443322 332 344432 35788884 66776632 22221 12
Q ss_pred Hhh--CC-CCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 203 LHR--YP-SLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 203 ~~~--~P-dl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
+.. .+ ++..+ +..|. ..-+.-|.+|+.|+++..
T Consensus 167 ~~~Gi~~~~v~~v-~~~g~-~~a~~aL~~G~vDa~~~~ 202 (327)
T 4ddd_A 167 GEKGWTKKDFSVM-AELKS-SEQAQALCDNKIDVMVDV 202 (327)
T ss_dssp HHHTCCGGGCSEE-ECCCH-HHHHHHHHTTSCSBEEEE
T ss_pred HHcCCChHhcchh-hcCCH-HHHHHHHHcCCCCEEEEc
Confidence 222 22 33334 45654 667888999999999873
No 73
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=79.40 E-value=5.2 Score=32.88 Aligned_cols=142 Identities=12% Similarity=0.102 Sum_probs=73.9
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+=.+... .-.-.+...+++.||++. +++.... ..++.+.|.+|++|+
T Consensus 28 ~~g~l~Ig~~~~~~~-~~l~~~l~~f~~~~P~v~----l~~~~~~--------------------~~~~~~~l~~g~~Dl 82 (238)
T 2hxr_A 28 TRGSLRIAVTPTFTS-YFIGPLMADFYARYPSIT----LQLQEMS--------------------QEKIEDMLCRDELDV 82 (238)
T ss_dssp ---CEEEEECHHHHT-TTHHHHHHHHHHHCTTSC----EEEEECC--------------------HHHHHHHHHTTSCSE
T ss_pred cCCeEEEeechhhHH-HHHHHHHHHHHHhCCCcE----EEEEECC--------------------HHHHHHHHHcCCCcE
Confidence 346799998765433 334445677888899863 5553321 247888999999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC-------ccCcccCCCCCEEecC--C-hHHH-HH-HHhhCCCCEE
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-------AASLAELPAGSIVGTA--S-LRRK-SQ-ILHRYPSLKV 211 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~-------~~~l~dLp~ga~IGTS--S-~RR~-aQ-L~~~~Pdl~v 211 (326)
++-.... .++++....+. .++--+++.++ ..+++||..-..|..+ + .|+. .+ +....-..++
T Consensus 83 ~i~~~~~----~~~~l~~~~l~--~~~~~~v~~~~hpl~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (238)
T 2hxr_A 83 GIAFAPV----HSPELEAIPLL--TESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQV 156 (238)
T ss_dssp EEEESSC----CCTTEEEEEEE--EEEEEEEEETTSGGGGCSEECGGGGGGCEEEEECTTSHHHHHHHHHHHHTTCCCEE
T ss_pred EEEcCCC----Ccccceeeeec--cCcEEEEEcCCCcccccCCCCHHHHhcCCeEEecCCccHHHHHHHHHHHcCCCCCe
Confidence 9975421 24555432221 12222222221 1245555444445332 2 3321 12 2222223333
Q ss_pred EeccCCCHHHHHhhhccCCccEEeeeh
Q 020472 212 MENFRGNVQTRLRKLNERVVQATLLAL 238 (326)
Q Consensus 212 ~~~iRGNV~TRL~KL~~ge~DAIILA~ 238 (326)
. -.-.|+++-+.-+.+|..=+ +++.
T Consensus 157 ~-~~~~~~~~~~~~v~~g~Gi~-~lp~ 181 (238)
T 2hxr_A 157 V-IEANSISAVLELIRRTSLST-LLPA 181 (238)
T ss_dssp E-EEESCHHHHHHHHHHSSCBE-EEET
T ss_pred E-EEeCCHHHHHHHHHcCCcEE-EecH
Confidence 3 23368999888888885434 4444
No 74
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=78.30 E-value=4.3 Score=36.49 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=40.8
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhh---C--CCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHc
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMAL---H--PELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALIN 138 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~---~--p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~ 138 (326)
...+|+||+ .|..+..-...+...+++. | |++. +++..-. +.++.++|.+
T Consensus 18 ~~g~L~Ig~-~~~~~~~~lp~ll~~F~~~~~~~~~P~v~----v~l~~~~--------------------s~~l~~~l~~ 72 (294)
T 3cvg_A 18 SPVQLRIGN-GGAGQSGLVKELADAFIKSKVDSGSAPFK----VAWYKSD--------------------TTVTINYLKD 72 (294)
T ss_dssp -CEEEEEEE-SHHHHHTHHHHHHHHHHHHHHSCC---CE----EEEEECC--------------------HHHHHHHHHT
T ss_pred CCceEEEEe-ccchhHHHHHHHHHHHHhhhcccCCCCeE----EEEEeCC--------------------HHHHHHHHHc
Confidence 346899996 4555555566788888888 9 9762 5444321 3578899999
Q ss_pred CCCcEEEeeC
Q 020472 139 SQIDIAVHSM 148 (326)
Q Consensus 139 g~iDiAVHSl 148 (326)
|++|+++-+.
T Consensus 73 G~~Dl~i~~~ 82 (294)
T 3cvg_A 73 GIVDVGITYS 82 (294)
T ss_dssp TSCSEEEESC
T ss_pred CCCcEEEEcC
Confidence 9999998653
No 75
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=77.83 E-value=32 Score=29.32 Aligned_cols=140 Identities=13% Similarity=0.037 Sum_probs=75.3
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-.+.... ---.+...+++.||++. +++... + ..++.+.|.+|++|+
T Consensus 93 ~~g~l~i~~~~~~~~~-~l~~~l~~f~~~~P~i~----i~l~~~----~----------------~~~~~~~l~~g~~Dl 147 (306)
T 3fzv_A 93 IAGQIDIGCFETVAPL-YLPGLIAGFRQAYPGVE----IRIRDG----E----------------QQELVQGLTSGRFDL 147 (306)
T ss_dssp CCEEEEEEEEGGGHHH-HHHHHHHHHHHHCTTEE----EEEEEE----C----------------HHHHHHHHHHTSCSE
T ss_pred CCceEEEEechhhhHH-HHHHHHHHHHHHCCCeE----EEEEeC----C----------------HHHHHHHHHCCCccE
Confidence 3578999997775443 34456667778899752 444321 1 257889999999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc-------cCcccCCCCCEEec--CChHHH--HHHHhhCCCCEEE
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-------ASLAELPAGSIVGT--ASLRRK--SQILHRYPSLKVM 212 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~-------~~l~dLp~ga~IGT--SS~RR~--aQL~~~~Pdl~v~ 212 (326)
|+....+. ++++..-.+.. +++--+++.+++ .+++||..-..|.. .+.|+. ..+....-..++.
T Consensus 148 ~i~~~~~~----~~~l~~~~l~~-~~~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 222 (306)
T 3fzv_A 148 AFLYEHDL----DSTIETEPLMP-PQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIA 222 (306)
T ss_dssp EEECSSSC----CTTEEEEESSC-CBCCEEEEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEE
T ss_pred EEEecccc----ccccceeeeee-ccccEEEecCCCcccCCCCCCHHHHcCCCEEEecCCcchHHHHHHHHHcCCCCCeE
Confidence 99865433 33443222211 222223332221 24455555445542 222332 1222222223333
Q ss_pred eccCCCHHHHHhhhccCCccEE
Q 020472 213 ENFRGNVQTRLRKLNERVVQAT 234 (326)
Q Consensus 213 ~~iRGNV~TRL~KL~~ge~DAI 234 (326)
-.-.|+++-+.-+.+|..=++
T Consensus 223 -~~~~~~~~~~~~v~~g~Gia~ 243 (306)
T 3fzv_A 223 -FSSPSIEMVRGMVGQGFGFSL 243 (306)
T ss_dssp -EEESCHHHHHHHHHTTSCBEE
T ss_pred -EEeCCHHHHHHHHHcCCCEEE
Confidence 234688888888888854333
No 76
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=77.32 E-value=12 Score=33.90 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=62.6
Q ss_pred HHHHHHcCCCcEEEeeCCCCCCCCCCCc--eeeeecCCCCCcceeeccCc---cCcccCCCCCEEecCChHHHHHHHhh-
Q 020472 132 IDEALINSQIDIAVHSMKDVPTYLPEKT--ILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRRKSQILHR- 205 (326)
Q Consensus 132 Le~ALl~g~iDiAVHSlKDlPt~lp~gL--~iaAv~kReDprD~LV~~~~---~~l~dLp~ga~IGTSS~RR~aQL~~~- 205 (326)
.-++|..|++|+++...-.+-.....|. .+++..-..++.-+++.++. +++.|| +|-+||+...==...++..
T Consensus 51 ~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dL-kGK~ig~~~~~~~~~l~~~L 129 (342)
T 4esw_A 51 VTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSL-KGKRIGYVGEFGKIQVDELT 129 (342)
T ss_dssp HHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGG-TTCEEEESSSHHHHHHHHHH
T ss_pred HHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEeccCCcccccccccccccCCHHHh-CCCEEEecCCchHHHHHHHH
Confidence 4589999999999876422211122333 33333334444444443321 346777 6889987543223333322
Q ss_pred -----C-CCCEEEeccCCCHHHHHhhhccCCccEEeeeh--------hhhcccCCCc
Q 020472 206 -----Y-PSLKVMENFRGNVQTRLRKLNERVVQATLLAL--------AGLKRLSMTE 248 (326)
Q Consensus 206 -----~-Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~--------AGL~RLgl~~ 248 (326)
- .+.+++ ++-.+. ..-|.+|+.||.+... .++.+.|...
T Consensus 130 ~~~Gl~~~dv~~v-~~~~~~---~~al~~G~vDa~~~~~p~~~~~~~~~~~~~g~~~ 182 (342)
T 4esw_A 130 KHYGMTPDDYVAV-RCGMNV---AKYILEGTIDCGIGIECIQQVELEEALKEQGKDS 182 (342)
T ss_dssp GGGTCCGGGSEEE-ECGGGH---HHHHHHTSSSEEEEETTTHHHHHHHHHHHTTCCG
T ss_pred HHcCCChhheEEe-cCCHHH---HHHHHcCCCCEEEEeccchHHHHHHHHHhhCccc
Confidence 1 356776 665444 3457789999998743 3455556543
No 77
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=77.13 E-value=5.7 Score=37.71 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=60.7
Q ss_pred HHHHHHHcCC----CcEEEeeCCCCCC---------CCCCCceeeeecCCCCCcceeecc-Cc------cCc-------c
Q 020472 131 EIDEALINSQ----IDIAVHSMKDVPT---------YLPEKTILPCNLQREDVRDAFISL-SA------ASL-------A 183 (326)
Q Consensus 131 ELe~ALl~g~----iDiAVHSlKDlPt---------~lp~gL~iaAv~kReDprD~LV~~-~~------~~l-------~ 183 (326)
++-++|..|+ +|+++-. -++|. .....+.+++...+. . .+++.+ +. +++ .
T Consensus 75 ~~~~al~~G~~~~giD~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-~~i~v~~~~~~~~i~~s~~~l~~~~~ 151 (417)
T 2g29_A 75 TTRDNLVLGSASGGIDGAHIL-TPMPYLITMGTVTDGKPTPMYILARLNVN-G-QGIQLGNNYKDLKVGTDAAPLKEAFA 151 (417)
T ss_dssp HHHHHHHHCGGGTSCSEEEEE-THHHHHHHHCTTSSSCCCCEEEEEECCBS-C-EEEEECGGGGGGCCCSCCTTHHHHHH
T ss_pred HHHHHHHCCCCcCCcCeEeec-chHHHHHHhCcccCCCCCCEEEEEEeccC-C-eEEEEecchhhccccCCHHHHHHHHH
Confidence 5679999999 9999753 24441 113344555554333 2 444443 22 343 4
Q ss_pred cCCCCCEEecC---ChHHH---HHHHh--hCC--CCEEEeccCCCHHHHHhhhccCCccEEeeehh
Q 020472 184 ELPAGSIVGTA---SLRRK---SQILH--RYP--SLKVMENFRGNVQTRLRKLNERVVQATLLALA 239 (326)
Q Consensus 184 dLp~ga~IGTS---S~RR~---aQL~~--~~P--dl~v~~~iRGNV~TRL~KL~~ge~DAIILA~A 239 (326)
|| +|-+||++ |.-.. ..|.. +.| |++++ .+. -...+.-|.+|+.||.++..-
T Consensus 152 dL-kGk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v-~~~--~~~~~~aL~~G~vDa~~~~eP 213 (417)
T 2g29_A 152 KV-TDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTI-VVP--PAQMVANVKVNAMESFCVGEP 213 (417)
T ss_dssp TS-SSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEE-ECC--GGGHHHHHHTTSCSEEEEETT
T ss_pred hc-CCCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEE-ECC--HHHHHHHHHcCCCCEEEeCCC
Confidence 56 48899975 32211 11222 234 68888 773 367788899999999998643
No 78
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=76.23 E-value=35 Score=28.90 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=78.1
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-.+....+ .-.+...+++.||++. +++... + ..++.+.|.+|++|+
T Consensus 89 ~~g~l~Ig~~~~~~~~~-l~~~l~~f~~~~P~i~----l~~~~~----~----------------~~~~~~~l~~g~~Dl 143 (294)
T 1ixc_A 89 DVGELSVAYFGTPIYRS-LPLLLRAFLTSTPTAT----VSLTHM----T----------------KDEQVEGLLAGTIHV 143 (294)
T ss_dssp CCEEEEEEECSGGGGTH-HHHHHHHHHHHCTTEE----EEEEEC----C----------------HHHHHHHHHHTSCSE
T ss_pred CCceEEEEEccchhHHH-HHHHHHHHHHHCCCcE----EEEEeC----C----------------HHHHHHHHHCCCccE
Confidence 45789999987754333 3345567778899752 444322 1 247889999999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC-------ccCcccCCCCCEEecC-----ChHHH-HH-HHhhCCCC
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-------AASLAELPAGSIVGTA-----SLRRK-SQ-ILHRYPSL 209 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~-------~~~l~dLp~ga~IGTS-----S~RR~-aQ-L~~~~Pdl 209 (326)
|+..... .++++....+. .++--+++.++ ..+++||..-..|..+ ..|+. .+ +....-..
T Consensus 144 ~i~~~~~----~~~~l~~~~l~--~~~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~ 217 (294)
T 1ixc_A 144 GFSRFFP----RHPGIEIVNIA--QEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEP 217 (294)
T ss_dssp EEESCCC----CCTTEEEEEEE--EEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCC
T ss_pred EEEecCC----CCCCceEEEEe--eccEEEEEeCCCccccCCccCHHHHcCCCEEeeCCCCCchHHHHHHHHHHHCCCCc
Confidence 9976432 14565433222 12222222221 1246666555555443 33432 12 22222233
Q ss_pred EEEeccCCCHHHHHhhhccCCccEEe
Q 020472 210 KVMENFRGNVQTRLRKLNERVVQATL 235 (326)
Q Consensus 210 ~v~~~iRGNV~TRL~KL~~ge~DAII 235 (326)
++. -.=.|.++-+.-+.+|..=|++
T Consensus 218 ~~~-~~~~~~~~~~~~v~~g~Gia~l 242 (294)
T 1ixc_A 218 RIA-RVVEDATAALALTMAGAASSIV 242 (294)
T ss_dssp EEE-EECSSHHHHHHHHHTTSCBEEE
T ss_pred cee-eecCCHHHHHHHHHcCCeEEEe
Confidence 443 3446899999888888654444
No 79
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=74.35 E-value=42 Score=28.91 Aligned_cols=188 Identities=10% Similarity=0.006 Sum_probs=95.1
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-.+.... ---.+...+.+.||++. +++....+ .++.+.|.+|++|+
T Consensus 90 ~~g~l~I~~~~~~~~~-~l~~~l~~f~~~~P~i~----i~l~~~~~--------------------~~~~~~l~~g~~Dl 144 (305)
T 3fxq_A 90 WEGHITFAASPAIALA-ALPLALASFAREFPDVT----VNVRDGMY--------------------PAVSPQLRDGTLDF 144 (305)
T ss_dssp HHTEEEEEECHHHHHT-HHHHHHHHHHHHCTTCE----EEEEECCT--------------------TTTHHHHHHTSSSE
T ss_pred CCceEEEEechHHHHH-HHHHHHHHHHHHCCCCE----EEEEECCH--------------------HHHHHHHHcCCCCE
Confidence 3578999998765443 34455667788899863 55433211 24668899999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc-----cCcccCCCCCEEecC---ChHH-HHHHH-h-hCCCCEEE
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-----ASLAELPAGSIVGTA---SLRR-KSQIL-H-RYPSLKVM 212 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~-----~~l~dLp~ga~IGTS---S~RR-~aQL~-~-~~Pdl~v~ 212 (326)
|+-....-+ .++++..-.+. +++.-+++.+++ .+++||..-..|..+ +.++ ..++. . -.+..++.
T Consensus 145 ai~~~~~~~--~~~~l~~~~L~--~~~~~~v~~~~hpla~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 220 (305)
T 3fxq_A 145 ALTAAHKHD--IDTDLEAQPLY--VSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLG 220 (305)
T ss_dssp EEEECCGGG--SCTTEEEEEEE--ECCEEEEEETTCTTTTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCCCC--CccCeeEEEee--cCcEEEEEcCCCCCCCCCCHHHHhCCCeEeeCCCCCHHHHHHHHHHHcCCCCCCce
Confidence 998754321 24455332222 122222222221 246666555555432 2232 12222 2 12233333
Q ss_pred eccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCc---hhHHhhhhcc
Q 020472 213 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND---EKMVPFTTHS 286 (326)
Q Consensus 213 ~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD---~~~~~lL~~~ 286 (326)
-.-.|+.+-+.-+.+|.. -.+++..-+...--...+ ..++++...| +--+.+.++++. +.+..+++.+
T Consensus 221 -~~~~~~~~~~~~v~~g~g-ia~lp~~~~~~~~~~~~L-~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~f~~~l 291 (305)
T 3fxq_A 221 -LVCESFLALPGVVAHSDL-LTTMPRTLYERNAFKDQL-CSIPLQDALP---NPTIYVLRRHDLPVTPAAAGLIRWI 291 (305)
T ss_dssp -EEECCTTTHHHHHHTSSC-EEEEEHHHHHSSTTGGGE-EECCCSSCCC---CCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred -EEeCCHHHHHHHHHhCCE-EEEeeHHHHhhhhhcCCE-EEeeCCCCCC---CCceEEEEeCCCCCCHHHHHHHHHH
Confidence 233578888877777754 334555444332222223 2344433222 335667777653 4555555544
No 80
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=74.26 E-value=51 Score=29.90 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCcEEEeeC------------CCCCCCCCC--------------------------CceeeeecCCCCCc
Q 020472 130 KEIDEALINSQIDIAVHSM------------KDVPTYLPE--------------------------KTILPCNLQREDVR 171 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSl------------KDlPt~lp~--------------------------gL~iaAv~kReDpr 171 (326)
.|+=+++..|.+|+++-+. =|+|-..++ |+.+.++... .++
T Consensus 46 ~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~-g~~ 124 (316)
T 2vpn_A 46 DDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPYLMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPE-GEM 124 (316)
T ss_dssp -CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTTCSCSSHHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEE-EEE
T ss_pred HHHHHHHhCCCceEEeecchhhhccCcchhheecCeecCCHHHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecC-Cce
Confidence 4677999999999998772 167765544 4555555421 222
Q ss_pred ceeec-cCccCcccCCCCCEEec-CChHHHHHHHhhCCCCEEEeccC-CCHHHHHhhhccCCccEEeeehhhhcccCCCc
Q 020472 172 DAFIS-LSAASLAELPAGSIVGT-ASLRRKSQILHRYPSLKVMENFR-GNVQTRLRKLNERVVQATLLALAGLKRLSMTE 248 (326)
Q Consensus 172 D~LV~-~~~~~l~dLp~ga~IGT-SS~RR~aQL~~~~Pdl~v~~~iR-GNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~ 248 (326)
.+.+ +.-++++|| +|.+|.| .|.=-...++.+ ....+ ++- +.|-+- |..|..||.......+..+++.+
T Consensus 125 -~~~~~~pI~s~~Dl-kG~KiR~~~~~~~~~~~~~l--Ga~pv-~m~~~Evy~A---Lq~G~VDg~~~~~~~~~~~~~~e 196 (316)
T 2vpn_A 125 -VVTADEPITSPEDF-DNKKIRTMTNPLLAETYKAF--GATPT-PLPWGEVYGG---LQTGIIDGQENPIFWIESGGLYE 196 (316)
T ss_dssp -EEEESSCCCSGGGG-TTCEEEECSCHHHHHHHHHH--TCEEE-ECCGGGHHHH---HHHTSCSEEEEEHHHHHHTTGGG
T ss_pred -EEecCCCCCChHHh-CCCEEEeCCCHHHHHHHHHc--CCeee-ecCHHHHHHH---HHcCCcceeeCCHHHHHhcCHHH
Confidence 2333 234577888 7999988 443223445554 35556 554 345554 45799999999888887777654
Q ss_pred cc
Q 020472 249 NV 250 (326)
Q Consensus 249 ~i 250 (326)
-.
T Consensus 197 v~ 198 (316)
T 2vpn_A 197 VS 198 (316)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 81
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=72.36 E-value=5.7 Score=36.24 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=82.9
Q ss_pred CceEEEEeCCCH--HHHHH-HHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCC
Q 020472 65 VAIIRIGTRGSP--LALAQ-AHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQI 141 (326)
Q Consensus 65 ~~~IrIGTR~S~--LAlaQ-a~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~i 141 (326)
.++|+||.-.+. ..+.+ -..+.+.|.+.. ++ +++++...+ -.++.++|.+|++
T Consensus 3 ~~~l~iG~~p~~~p~~~~~~~~~l~~~l~k~l-G~----~ve~~~~~~-------------------~~~~i~al~~G~v 58 (310)
T 3n5l_A 3 QPVINFGIISTESSQNLKSIWEPFLKDMSQQT-GY----QVKAFFAPD-------------------YAGIIQGMRFDKV 58 (310)
T ss_dssp CCEEEEEECCSSCHHHHHHHHHHHHHHHHHHH-SS----EEEEECCSS-------------------HHHHHHHHHTTSC
T ss_pred CcEEEEEEecCCCHHHHHHHHHHHHHHHHHHh-CC----CEEEEeCCC-------------------HHHHHHHHHcCCC
Confidence 357899987654 22222 234666666543 12 355543211 1467899999999
Q ss_pred cEEEeeCCCCCC-CCCCCceeeeecC--CCCCc--ceeeccCc---cCcccCC---CCCEEecC-----ChHHHHH--H-
Q 020472 142 DIAVHSMKDVPT-YLPEKTILPCNLQ--REDVR--DAFISLSA---ASLAELP---AGSIVGTA-----SLRRKSQ--I- 202 (326)
Q Consensus 142 DiAVHSlKDlPt-~lp~gL~iaAv~k--ReDpr--D~LV~~~~---~~l~dLp---~ga~IGTS-----S~RR~aQ--L- 202 (326)
|+++-+....-. .-..+..+.+.+. -.+|. -+||.++. ++++||- +|-+||.. |-.-... +
T Consensus 59 Di~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~ 138 (310)
T 3n5l_A 59 DIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVF 138 (310)
T ss_dssp SEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTT
T ss_pred CEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCCCCCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHH
Confidence 999865211100 0012444444321 12332 25665433 4677872 46677631 2111111 1
Q ss_pred HhhCCC----CEEEeccCCCHHHHHhhhccCCccEEeeehhhhccc
Q 020472 203 LHRYPS----LKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRL 244 (326)
Q Consensus 203 ~~~~Pd----l~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RL 244 (326)
...--+ ++.+ ..|+.+.-+.-|.+|++|+.+.....+..+
T Consensus 139 ~~~Gi~~~~~~~~v--~~g~~~~~~~al~~G~vDa~~~~~~~~~~~ 182 (310)
T 3n5l_A 139 AKNNVDPVKAFKRT--LNSSHEVNALAVANKQVDVATFNTEGMERL 182 (310)
T ss_dssp TTTTCCHHHHSSEE--EECCHHHHHHHHHTTSSSEEEEEHHHHHHH
T ss_pred HHcCCChHHhcccc--ccCCHHHHHHHHHcCCccEEEecchhHHHH
Confidence 111111 3444 468988889999999999999976554443
No 82
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=70.62 E-value=67 Score=29.69 Aligned_cols=153 Identities=11% Similarity=0.025 Sum_probs=86.6
Q ss_pred ceEEEEeC---CCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCc
Q 020472 66 AIIRIGTR---GSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQID 142 (326)
Q Consensus 66 ~~IrIGTR---~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iD 142 (326)
.+++||+= ++.... ..+.+.+.+++...+ ++++....+ |- +|+ -.|+=++|..|.+|
T Consensus 34 ~~l~~~~~~~~~~~~~~-~~~~fa~~v~e~t~G-----~v~i~v~~~-g~---------Lg~----~~~~~e~v~~G~id 93 (361)
T 2zzv_A 34 YRWRIQTAWDAGTVGYS-LFQKFTERVKELTDG-----QLEVQPFPA-GA---------VVG----TFDMFDAVKTGVLD 93 (361)
T ss_dssp EEEEEEESSCTTSHHHH-HHHHHHHHHHHHTTT-----SEEEEEECT-TS---------SSC----GGGHHHHHHHTSSS
T ss_pred eEEEEeccCCCCCchhH-HHHHHHHHHHHhcCC-----eEEEEEeCC-Cc---------ccC----HHHHHHHHHcCcee
Confidence 46999974 344443 345678888776532 366655433 21 121 13666899999999
Q ss_pred EEEeeCC-------------CCCCCCC------------------------CCceeeeecCCCCCcceeec-cCccCccc
Q 020472 143 IAVHSMK-------------DVPTYLP------------------------EKTILPCNLQREDVRDAFIS-LSAASLAE 184 (326)
Q Consensus 143 iAVHSlK-------------DlPt~lp------------------------~gL~iaAv~kReDprD~LV~-~~~~~l~d 184 (326)
+++-+.- ++|-..+ .|+.+.+ .. .-++..+.+ +.-++++|
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~-~g~~~~~~~~~pI~s~~D 171 (361)
T 2zzv_A 94 GMNPFTLYWAGRMPVTAFLSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PV-QHDLNIIHSKKPIRRFED 171 (361)
T ss_dssp EEECBGGGGTTTCGGGGGSSCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EE-CCCCCCEEESSCCCSGGG
T ss_pred EEEeccccccccCcHHHHHhcCCCCcCCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-cc-CCccccceeCCCcCChHH
Confidence 9987742 3553321 1333332 11 112233333 23357788
Q ss_pred CCCCCEEecCChHHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeehhhh-cccCC
Q 020472 185 LPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL-KRLSM 246 (326)
Q Consensus 185 Lp~ga~IGTSS~RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL-~RLgl 246 (326)
| +|.+|.+.+.=-...++.+ ....+ ++- ...=..-|.+|..||.......+ .-.++
T Consensus 172 L-kG~kirv~~~~~~~~~~~l--Ga~pv-~~~--~~e~~~ALq~G~VDg~~~~~~~~~~~~~~ 228 (361)
T 2zzv_A 172 F-KGVKLRVPGGMIAEVFAAA--GASTV-LLP--GGEVYPALERGVIDAADFVGPAVNYNLGF 228 (361)
T ss_dssp G-TTCEEECCSHHHHHHHHHT--TCEEE-CCC--GGGHHHHHHTTSCSEEECSCHHHHHHTTH
T ss_pred h-CCCEEeecCHHHHHHHHHc--CCeee-ecC--hHHHHHHHHcCCcceeecCCcchhhhcCh
Confidence 8 7999998873222233333 56666 663 44556667899999998665555 44443
No 83
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=67.63 E-value=64 Score=28.30 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=74.3
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEEEe
Q 020472 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVH 146 (326)
Q Consensus 67 ~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiAVH 146 (326)
+|+||+-.+.... -.-.+...+.+.||++. +++.... +.++.+.|.+|++|+|+-
T Consensus 91 ~l~Ig~~~~~~~~-~l~~~l~~f~~~~P~v~----l~l~~~~--------------------~~~~~~~l~~g~~Dlai~ 145 (313)
T 2h98_A 91 TLRIGYVSSLLYG-LLPEIIYLFRQQNPEIH----IELIECG--------------------TKDQINALKQGKIDLGFG 145 (313)
T ss_dssp EEEEEECGGGGGT-THHHHHHHHHHHCTTSE----EEEEECC--------------------HHHHHHHHHHTSCSEEEE
T ss_pred EEEEEechHhHHh-HHHHHHHHHHHHCCCeE----EEEEeCC--------------------hHHHHHHHHcCCCCEEEE
Confidence 8999997765432 33445667778899863 5543221 246889999999999997
Q ss_pred eCCCCCCCCCCCceeeeecCCCCCcceeecc--------Cc-cCcccCCCCCEEec-----CChHHH-HH-HHh--hCCC
Q 020472 147 SMKDVPTYLPEKTILPCNLQREDVRDAFISL--------SA-ASLAELPAGSIVGT-----ASLRRK-SQ-ILH--RYPS 208 (326)
Q Consensus 147 SlKDlPt~lp~gL~iaAv~kReDprD~LV~~--------~~-~~l~dLp~ga~IGT-----SS~RR~-aQ-L~~--~~Pd 208 (326)
.... .++++....+.. ++.-+++.+ +. .+++||..-..|.. +..|+. .+ +.. ..|+
T Consensus 146 ~~~~----~~~~l~~~~L~~--~~~~~v~~~~hpl~~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (313)
T 2h98_A 146 RLKI----TDPAIRRIMLHK--EQLKLAIHKHHHLNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPS 219 (313)
T ss_dssp SSCC----CCTTEEEEEEEE--EEEEEEEETTSGGGGGTTSCBCGGGGTTSCEEECCCSSSSSHHHHHHHHHHHTTCCCS
T ss_pred eCCC----CCCCeeEEEeee--CcEEEEEcCCCcccccCCCCcCHHHHcCCCEEEecCCCCchHHHHHHHHHHHcCCCCC
Confidence 5422 244554322211 111111111 11 34566665556652 233432 12 222 2344
Q ss_pred CEEEeccCCCHHHHHhhhccCCccEEe
Q 020472 209 LKVMENFRGNVQTRLRKLNERVVQATL 235 (326)
Q Consensus 209 l~v~~~iRGNV~TRL~KL~~ge~DAII 235 (326)
..+. -.|.++-+.-+.+|..=|++
T Consensus 220 ~~~~---~~~~~~~~~~v~~g~Gia~l 243 (313)
T 2h98_A 220 KLTE---IREIQLALGLVAAGEGVCIV 243 (313)
T ss_dssp CEEE---CSCHHHHHHHHHTTSCBEEE
T ss_pred ceEE---eCCHHHHHHHHHcCCcEEEe
Confidence 4333 46889988888888654443
No 84
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=66.86 E-value=17 Score=32.85 Aligned_cols=184 Identities=15% Similarity=0.096 Sum_probs=102.3
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-+..=..+.++.++..|++. ++ +++++. |+. .-+.+||.+|+||+
T Consensus 14 ~~~~I~Ig~~~~te~~i~~~i~~~~Le~~--G~----~Ve~~~----~~~----------------~~~~~AL~~G~iD~ 67 (280)
T 3tmg_A 14 NLKSVKIGYVNWGGETAATNVLKVVFEKM--GY----NAEIFS----VTT----------------SIMYQYLASGKIDG 67 (280)
T ss_dssp -CEEEEEEECCCHHHHHHHHHHHHHHHHT--TE----EEEEEE----CCH----------------HHHHHHHHTTSSSE
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHHHHC--CC----ceEEEE----CCc----------------HHHHHHHHCCCCcE
Confidence 34689999999988888899999999863 22 455532 321 23568999999999
Q ss_pred EEeeCCCCCCC-------CCCCceeeeecCCCCCcceeeccCc---cCcccCCCC------CEEecC--C-hHH-HH-HH
Q 020472 144 AVHSMKDVPTY-------LPEKTILPCNLQREDVRDAFISLSA---ASLAELPAG------SIVGTA--S-LRR-KS-QI 202 (326)
Q Consensus 144 AVHSlKDlPt~-------lp~gL~iaAv~kReDprD~LV~~~~---~~l~dLp~g------a~IGTS--S-~RR-~a-QL 202 (326)
.+-- .+|.. ...++...+... .+....|+.+++ ++++||..- -++|.. + .++ .. .+
T Consensus 68 ~~e~--w~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~l~V~~~~~i~sisDL~~~~~~f~~~~~g~~~G~~~~~~~~~~l 144 (280)
T 3tmg_A 68 TVSS--WVPTADKFYYEKLKTKFVDLGANY-EGTIQGFVVPSYVPISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQAL 144 (280)
T ss_dssp EEEE--EETTTTHHHHHHHGGGEEEEEEEE-EEEEEEEEEETTSCCCBGGGGTTCGGGGTTEEECCSTTCHHHHHHHHHH
T ss_pred EEec--cCCcccHHHHHHhcCcEEEccccC-CCceEEEEECCCCCCCCHHHHHhhHHHcCCeEEecCCCchhHHHHHHHH
Confidence 8753 22321 123455444333 333466776653 567888643 356642 2 222 22 33
Q ss_pred HhhC--CCCEEEeccCCCHH-----HHHhhhccCCccEEee--ehhhhcccCCCccceeeecCCCCCCCcccceeeeEee
Q 020472 203 LHRY--PSLKVMENFRGNVQ-----TRLRKLNERVVQATLL--ALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACR 273 (326)
Q Consensus 203 ~~~~--Pdl~v~~~iRGNV~-----TRL~KL~~ge~DAIIL--A~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R 273 (326)
+.+- .+++++ .|.-. .+ +.+.+|+.|++.. .-.-+.++++ ...=||..+...+.+ +...+|
T Consensus 145 ~~yGL~~~~~~v---~~s~~~m~~~l~-~A~~~g~~~v~~~w~p~~~~~~~~l----~~LeD~k~~~~p~~~--~~~vvr 214 (280)
T 3tmg_A 145 NYYGLSKEYELV---PSSESVMLASLD-SSIKRNEWILVPLWKPHWAFSRYDI----KFLDDPDLIMGGIES--VHTLVR 214 (280)
T ss_dssp HHTTCTTTSEEE---CCCHHHHHHHHH-HHHHTTCCCCEEEEESCTHHHHSCE----EECBCTTCTTCSSEE--EEEEEE
T ss_pred HhcCCCCceEEE---eCCHHHHHHHHH-HHHHCCCCEEEEEecCchhhhcCCe----EEecCccccCCCcce--EEEEec
Confidence 3332 235555 35432 23 6788999987654 1122333322 111234443212333 445566
Q ss_pred c----CchhHHhhhhcc
Q 020472 274 S----NDEKMVPFTTHS 286 (326)
Q Consensus 274 ~----dD~~~~~lL~~~ 286 (326)
+ +.+++.++|+.+
T Consensus 215 ~~~~~~~P~~~~~L~~l 231 (280)
T 3tmg_A 215 LGLENDDFDAYYVFDHF 231 (280)
T ss_dssp TTHHHHCHHHHHHHHHC
T ss_pred cchhhHChHHHHHHHhC
Confidence 5 357888999887
No 85
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=66.09 E-value=8.1 Score=37.26 Aligned_cols=102 Identities=7% Similarity=0.058 Sum_probs=62.7
Q ss_pred HHHHHHHcCC----CcEEEeeCCCCCCCC---------CCCceeeeecCCCCCcceeeccCc------cC--------cc
Q 020472 131 EIDEALINSQ----IDIAVHSMKDVPTYL---------PEKTILPCNLQREDVRDAFISLSA------AS--------LA 183 (326)
Q Consensus 131 ELe~ALl~g~----iDiAVHSlKDlPt~l---------p~gL~iaAv~kReDprD~LV~~~~------~~--------l~ 183 (326)
++-++|.+|+ +|+++- +-++|... ...+.+++..-+. . .+++.++. .+ ++
T Consensus 78 ~~~~al~~G~~~~~~D~a~~-~~~~~~~~~~g~~~~~~g~~~~~v~~~~~~-g-~~i~v~~~~~~s~i~~~~~~lk~~i~ 154 (429)
T 2i49_A 78 SARDNVTIGSQGGGIDGGQW-QMPMPHLITEGIITNGNKVPMYVLAQLITQ-G-NGIAVAPMHEGKGVNLDITKAADYIK 154 (429)
T ss_dssp HHHHHHHHTGGGTSCSEEEE-CTTHHHHHHTTTTTTTCCCCEEEEEECCBC-C-EEEEECGGGTTTTCSSCCGGGHHHHH
T ss_pred HHHHHHHcCCCCCceeEEEe-ccHHHHHHHcCccccCCCCCEEEEEEeccC-C-cEEEEecchhhcccccchHHHHHHHH
Confidence 5778999999 999975 34454321 3345565555553 3 44544321 11 36
Q ss_pred cC-C-CCC--EEecC---ChHH---HHHHHh--hCC--CCEEEeccCCCHHHHHhhhccCCccEEeeeh
Q 020472 184 EL-P-AGS--IVGTA---SLRR---KSQILH--RYP--SLKVMENFRGNVQTRLRKLNERVVQATLLAL 238 (326)
Q Consensus 184 dL-p-~ga--~IGTS---S~RR---~aQL~~--~~P--dl~v~~~iRGNV~TRL~KL~~ge~DAIILA~ 238 (326)
|| . +|- +||++ |.-. +.-|.. +.| |++++ .+ +....+.-|.+|+.||+++..
T Consensus 155 dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v-~~--~~~~~~~aL~~G~iDa~~~~e 220 (429)
T 2i49_A 155 GFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLL-AV--PPAETVQGMRNGTMDAFSTGD 220 (429)
T ss_dssp THHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEE-EC--CHHHHHHHHHHTCCCEEEEET
T ss_pred HHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEE-EC--ChHHHHHHHHcCCccEEEecc
Confidence 66 3 266 89875 3221 112222 346 68888 77 468889999999999999864
No 86
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=65.51 E-value=68 Score=27.81 Aligned_cols=140 Identities=19% Similarity=0.088 Sum_probs=75.4
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEEEe
Q 020472 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVH 146 (326)
Q Consensus 67 ~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiAVH 146 (326)
+|+||+-.+.... ---.+...+.+.||++. +++.... +.++.+.|.+|++|+|+-
T Consensus 91 ~l~Ig~~~~~~~~-~l~~~l~~f~~~~P~v~----i~l~~~~--------------------~~~~~~~l~~g~~Dlai~ 145 (312)
T 2h9b_A 91 TIRIGFVGSLLFG-LLPRIIHLYRQAHPNLR----IELYEMG--------------------TKAQTEALKEGRIDAGFG 145 (312)
T ss_dssp EEEEEECGGGGGT-THHHHHHHHHHTCTTCE----EEEEECC--------------------HHHHHHHHHTTSCSEEEE
T ss_pred eEEEEechhhhHh-hHHHHHHHHHHHCCCcE----EEEEeCC--------------------HHHHHHHHHcCCCCEEEE
Confidence 8999997765432 33445667788899863 5543221 356889999999999997
Q ss_pred eCCCCCCCCCCCceeeeecCCCCCcceeecc--------Cc-cCcccCCCCCEEec-----CChHHH-HH-HHhhCCCCE
Q 020472 147 SMKDVPTYLPEKTILPCNLQREDVRDAFISL--------SA-ASLAELPAGSIVGT-----ASLRRK-SQ-ILHRYPSLK 210 (326)
Q Consensus 147 SlKDlPt~lp~gL~iaAv~kReDprD~LV~~--------~~-~~l~dLp~ga~IGT-----SS~RR~-aQ-L~~~~Pdl~ 210 (326)
.... .++++...-+. .++--+++.+ +. .+++||..-..|.. +..|+. .+ +....-..+
T Consensus 146 ~~~~----~~~~l~~~~L~--~~~~~~v~~~~hpla~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~ 219 (312)
T 2h9b_A 146 RLKI----SDPAIKHSLLR--NERLMVAVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPT 219 (312)
T ss_dssp SSCC----CCTTEEEEEEE--EEEEEEEEETTSGGGGGTTTCBCGGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCS
T ss_pred eCCC----CCCCceEEEee--cceEEEEEcCCCccccccCCCCCHHHHcCCCEEEeCCCCCchHHHHHHHHHHHcCCCCC
Confidence 5432 24555432221 1111111111 11 34667755555542 233442 12 222222223
Q ss_pred EEeccCCCHHHHHhhhccCCccEEeeehh
Q 020472 211 VMENFRGNVQTRLRKLNERVVQATLLALA 239 (326)
Q Consensus 211 v~~~iRGNV~TRL~KL~~ge~DAIILA~A 239 (326)
+. -.-.|+++-+.-+.+|..=|+ ++..
T Consensus 220 ~~-~~~~~~~~~~~~v~~g~Gia~-lp~~ 246 (312)
T 2h9b_A 220 KI-NEVREVQLALGLVAAGEGISL-VPAS 246 (312)
T ss_dssp EE-EECSSHHHHHHHHHTTSCBEE-EEGG
T ss_pred ce-EEecCHHHHHHHHHcCCcEEE-ecch
Confidence 33 234689998888888854333 4443
No 87
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=64.87 E-value=20 Score=32.00 Aligned_cols=184 Identities=11% Similarity=0.078 Sum_probs=105.1
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEEE
Q 020472 66 AIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAV 145 (326)
Q Consensus 66 ~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiAV 145 (326)
++|+||+-+..=..+.++.++..|++. +. +++++. |+. .-+-+||.+|+||+.+
T Consensus 2 ~~I~ig~~~w~e~~i~~~i~~~~Le~~--G~----~Ve~~~----~~~----------------~~~~~al~~G~iD~~~ 55 (256)
T 3l6g_A 2 KKVDLVYMNWDSEVASINVLTQAMKEH--GF----DVKTTA----LDN----------------AVAWQTVANGQADGMV 55 (256)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHT--TE----EEEEEE----CCH----------------HHHHHHHHTTSSSEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHHHHHHC--CC----ceEEEE----CCh----------------HHHHHHHHCCCCeEEE
Confidence 579999999999999999999999974 22 455532 221 2356899999999986
Q ss_pred eeCCCCCCC-------CCCCceeeeecCCCCCcceeeccCc---cCcccCCC---CCEEecC--C-hHH-HHHHHhhCCC
Q 020472 146 HSMKDVPTY-------LPEKTILPCNLQREDVRDAFISLSA---ASLAELPA---GSIVGTA--S-LRR-KSQILHRYPS 208 (326)
Q Consensus 146 HSlKDlPt~-------lp~gL~iaAv~kReDprD~LV~~~~---~~l~dLp~---ga~IGTS--S-~RR-~aQL~~~~Pd 208 (326)
--. +|.. ...++...+... .+..+.|+.+++ ++++||.+ |-++|.. + .++ ..+....||+
T Consensus 56 e~w--~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~l~Vp~~~~i~si~DL~~~~~g~~~g~~~G~~~~~~~~~~l~~y~g 132 (256)
T 3l6g_A 56 SAW--LPNTHKTQWQKYGKSVDLLGPNL-KGAKVGFVVPSYMNVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYDN 132 (256)
T ss_dssp EEE--ETTTTHHHHHHHGGGEEEEEEEE-EEEEEEEEEETTSCCCBGGGCSSGGGGEEECCCTTCHHHHHHHHHHTTCGG
T ss_pred ccc--CCcccHHHHHHhCCceEEccccC-CCceEEEEECCccCCCCHHHHHHhcCCeEEecCCCchhhHHHHHHHHhcCC
Confidence 431 2321 113344444333 334566776653 57888853 5566653 2 233 2233344543
Q ss_pred CE-EEeccCCCHHH-----HHhhhccCCccEEee--ehhhhcccCCCccceeeecCCCCCCCcccceeeeEeec----Cc
Q 020472 209 LK-VMENFRGNVQT-----RLRKLNERVVQATLL--ALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRS----ND 276 (326)
Q Consensus 209 l~-v~~~iRGNV~T-----RL~KL~~ge~DAIIL--A~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~----dD 276 (326)
+. +. .+.|.-.. + +.+.+|+.|++.. .-.-+.+.++ ...=||..+...+.+ +...+|+ +.
T Consensus 133 L~~~~-~v~~s~~~m~~~l~-~A~~~g~~~v~~~w~p~~~~~~~~l----~~LeDpk~~~~~~~~--~~~vvr~~~~~~~ 204 (256)
T 3l6g_A 133 LKDWK-LVPSSSGAMTVALG-EAIKQHKDIVITGWSPHWMFNKYDL----KYLADPKGTMGTSEN--INTIVRKGLKKEN 204 (256)
T ss_dssp GTTCE-EECCCHHHHHHHHH-HHHHTTCCCCEEEEESCTHHHHSCE----EECBCTTCTTCCCEE--EEEEEETTHHHHC
T ss_pred CCCeE-EecCCHHHHHHHHH-HHHHCCCCEEEEeecCchhhhhcCe----EEecCCccccCCcce--EEEeechhHHHHC
Confidence 33 33 44555432 3 6788999988765 1122333322 111244443222333 4445564 45
Q ss_pred hhHHhhhhcc
Q 020472 277 EKMVPFTTHS 286 (326)
Q Consensus 277 ~~~~~lL~~~ 286 (326)
+++.++|+.+
T Consensus 205 P~~~~~L~~~ 214 (256)
T 3l6g_A 205 PEAYKVLDKF 214 (256)
T ss_dssp HHHHHHHHHC
T ss_pred hHHHHHHHhc
Confidence 6888888877
No 88
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=59.88 E-value=11 Score=33.34 Aligned_cols=187 Identities=11% Similarity=0.108 Sum_probs=91.4
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-.+.... ---.+...+.+.||++. +++... + ..++.+.|.+|++|+
T Consensus 91 ~~g~l~I~~~~~~~~~-~l~~~l~~f~~~~P~v~----i~l~~~----~----------------~~~~~~~l~~g~~Dl 145 (324)
T 1al3_A 91 DKGSLYVATTHTQARY-ALPGVIKGFIERYPRVS----LHMHQG----S----------------PTQIAEAVSKGNADF 145 (324)
T ss_dssp CEEEEEEEECHHHHHH-TSHHHHHHHHHHCTEEE----EEEEEC----C----------------HHHHHHHHHTTCCSE
T ss_pred CCCeEEEEechhhhhh-HHHHHHHHHHHHCCCCE----EEEEEC----C----------------HHHHHHHHHCCCceE
Confidence 3468999987654332 23345667788899742 443221 1 246889999999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeeccCc-------cCcccCCCCCEEecC---ChHHH-HH-HHhhCCCCEE
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-------ASLAELPAGSIVGTA---SLRRK-SQ-ILHRYPSLKV 211 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~~-------~~l~dLp~ga~IGTS---S~RR~-aQ-L~~~~Pdl~v 211 (326)
|+.... ...++++....+. .++.-+++.+++ .+++||..-..|..+ ..|+. .+ +....-..++
T Consensus 146 ai~~~~---~~~~~~l~~~~L~--~~~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ 220 (324)
T 1al3_A 146 AIATEA---LHLYDDLVMLPCY--HWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRI 220 (324)
T ss_dssp EEESSC---CCTTSCEEEEEEE--EECEEEEECTTSTTTTTSCCCHHHHHTSEEEEECTTSTTHHHHHHHHHHHTCCCEE
T ss_pred EEEecC---CCCCCCeeEEEec--CCceEEEEcCCCccccCCCCCHHHHhCCCeEEecCCCcHHHHHHHHHHHcCCCCce
Confidence 997532 1124555432221 122222222221 233444333344432 22321 12 2222223344
Q ss_pred EeccCCCHHHHHhhhccCCccEEeeehhhhcccCCCccceeeecCCCCCCCcccceeeeEeecCc---hhHHhhhhccc
Q 020472 212 MENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND---EKMVPFTTHSQ 287 (326)
Q Consensus 212 ~~~iRGNV~TRL~KL~~ge~DAIILA~AGL~RLgl~~~i~~~L~~~~~lPA~GQGaLAVe~R~dD---~~~~~lL~~~~ 287 (326)
. -.-.|.++-+.-+.+|..=| +++..-.... ....+. .++.+...| .-.+.+.++++. +.+..+++.+.
T Consensus 221 ~-~~~~~~~~~~~lv~~G~Gia-ilp~~~~~~~-~~~~L~-~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~fi~~l~ 292 (324)
T 1al3_A 221 V-FTATDADVIKTYVRLGLGVG-VIASMAVDPV-SDPDLV-KLDANGIFS---HSTTKIGFRRSTFLRSYMYDFIQRFA 292 (324)
T ss_dssp E-EEESSHHHHHHHHHHTSCEE-EEEGGGCCTT-TCTTSE-EEECBTTBC---CEEEEEEEETTCCCCHHHHHHHHHHC
T ss_pred E-EEeCCHHHHHHHHHhCCCeE-Eechhhhhhh-ccCCeE-EEECCCCCc---ceEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 33468888888888885433 4444322221 122232 233333222 235677777654 34455555443
No 89
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=54.53 E-value=39 Score=30.67 Aligned_cols=189 Identities=12% Similarity=0.050 Sum_probs=104.7
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
..+|+||.-+..-..+.++.+...|++.+ + +++++. |+. ..+.+||.+|+||+.
T Consensus 6 ~~~I~ig~~~~~~~~~~~~i~~~~Le~~G--~----~Ve~~~----~~~----------------~~~~~Al~~G~iD~~ 59 (298)
T 2rin_A 6 CGTVRFSDVGWTDITATTATATTILEALG--Y----ETDVKV----LSV----------------PVTYTSLKNKDIDVF 59 (298)
T ss_dssp TTEEEEECCSCHHHHHHHHHHHHHHHHHT--C----EEEEEC----CCH----------------HHHHHHHHHTSCCEE
T ss_pred CCCEEEecCCCcHHHHHHHHHHHHHHHcC--C----ceEEEE----CCc----------------HHHHHHHHcCCcEEE
Confidence 35799999998888888898888898752 2 455543 321 235679999999999
Q ss_pred EeeCCCCC-C---CC--CCCceeeeecCCCCCcceeeccC------ccCcccCC------CCCEEecC---ChHH--HHH
Q 020472 145 VHSMKDVP-T---YL--PEKTILPCNLQREDVRDAFISLS------AASLAELP------AGSIVGTA---SLRR--KSQ 201 (326)
Q Consensus 145 VHSlKDlP-t---~l--p~gL~iaAv~kReDprD~LV~~~------~~~l~dLp------~ga~IGTS---S~RR--~aQ 201 (326)
+-..-..+ . .. ..++...+...- ...+.|+.++ -++++||. .|-++|.. +..+ ...
T Consensus 60 ~~~w~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~l~V~~~~ae~~I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~ 138 (298)
T 2rin_A 60 LGNWMPTMEADIAPYREDKSVETVRENLA-GAKYTLATNAKGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDM 138 (298)
T ss_dssp EEEEETTTHHHHHHHHTTTSEEEEEEEEE-EEEEEEEEEHHHHHHTCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHH
T ss_pred hhhccCchHHHHHHHhhCCCEEEeccCCC-CCeEEEEEchhHHhcCCCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHH
Confidence 74321111 0 01 245554443222 3446666543 36788886 47788773 2222 123
Q ss_pred HH--hh-CCCCEEEeccCCCHHH----HHhhhccCCccEEeeehh--hhcccCCCccceeeecCCCCCCC-cccceeeeE
Q 020472 202 IL--HR-YPSLKVMENFRGNVQT----RLRKLNERVVQATLLALA--GLKRLSMTENVTNILSVDDMLPA-VAQGAIGIA 271 (326)
Q Consensus 202 L~--~~-~Pdl~v~~~iRGNV~T----RL~KL~~ge~DAIILA~A--GL~RLgl~~~i~~~L~~~~~lPA-~GQGaLAVe 271 (326)
|+ .+ ..|++++ + +.-.. --+.+.+|+.|++..=.- -+..+++. ..=++..+.|. .+..-+.+.
T Consensus 139 l~~~~yGL~d~~~v-~--~~~~~~~a~~~~A~~~g~~~v~~~w~p~~~~~~~~l~----~L~d~k~~~~~~~~~~~~~~v 211 (298)
T 2rin_A 139 VEKGTFDLKGFEVV-E--SSEQGMLAQVARAEKSGDPIVFLGWEPHPMNANFKLT----YLSGGDDVFGPNYGGATVHTN 211 (298)
T ss_dssp HHHTGGGCTTCEEE-C--CCHHHHHHHHHHHHHTTCCCEEEEEESSTHHHHSCEE----ECBSCTTTTCHHHHEEEEEEE
T ss_pred hhhhcCCCCCceec-c--CCHHHHHHHHHHHHHCCCCEEEEEeccCchhhcCCee----ECCCCccccCCCCCcceEeee
Confidence 43 22 2366666 4 44322 125577899997765211 13333221 11123333332 223344455
Q ss_pred eecC----chhHHhhhhccc
Q 020472 272 CRSN----DEKMVPFTTHSQ 287 (326)
Q Consensus 272 ~R~d----D~~~~~lL~~~~ 287 (326)
+|++ .+++.++|+.+.
T Consensus 212 ~~~~~~~~~P~v~~~L~~~~ 231 (298)
T 2rin_A 212 VRAGYTTECPNVDKLLQNLS 231 (298)
T ss_dssp EETTHHHHSHHHHHHHHHCC
T ss_pred echHHHHHChHHHHHHHHcC
Confidence 6664 567888887664
No 90
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=54.20 E-value=14 Score=30.35 Aligned_cols=48 Identities=8% Similarity=0.012 Sum_probs=39.9
Q ss_pred CEEecCCh-------HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 189 SIVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 189 a~IGTSS~-------RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
-+||++.. ....+++..+|++++. -..++-+.-++.|.+|++|..|..
T Consensus 21 l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~-~~~~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 21 FTIATTDYAMQTILPFALPRIYQEAPNVSFN-FLPLQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp EEEEECSHHHHHTHHHHHHHHHHHCTTCEEE-EEECCGGGHHHHHHTSCCSEEEEC
T ss_pred EEEEechHHHHHHHHHHHHHHHHHCCCCEEE-EEECCcccHHHHHHcCCCCEEEec
Confidence 47888764 5567888899999997 777888888899999999998874
No 91
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=53.69 E-value=17 Score=29.64 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=38.5
Q ss_pred CEEecCC-------hHHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 189 SIVGTAS-------LRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 189 a~IGTSS-------~RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
-+||++. ++.-..++..||++++. -.-++-+.-++.|.+|++|..|..
T Consensus 32 l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~-~~~~~~~~~~~~l~~g~~Dl~i~~ 86 (238)
T 2hxr_A 32 LRIAVTPTFTSYFIGPLMADFYARYPSITLQ-LQEMSQEKIEDMLCRDELDVGIAF 86 (238)
T ss_dssp EEEEECHHHHTTTHHHHHHHHHHHCTTSCEE-EEECCHHHHHHHHHTTSCSEEEEE
T ss_pred EEEeechhhHHHHHHHHHHHHHHhCCCcEEE-EEECCHHHHHHHHHcCCCcEEEEc
Confidence 4777764 45677888999999997 777888888888999999988764
No 92
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=53.67 E-value=34 Score=29.13 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=37.4
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+=.+.... ---.+...+.+.||++. +++. + .|. + ..|.+|++|+
T Consensus 91 ~~g~l~I~~~~~~~~~-~l~~~l~~f~~~~P~v~----i~l~---~-~~~------------------~-~~l~~~~~Dl 142 (306)
T 3hhg_A 91 PQGVLSVDSAMPMVLH-LLAPLAAKFNERYPHIR----LSLV---S-SEG------------------Y-INLIERKVDI 142 (306)
T ss_dssp CCEEEEEEBCHHHHHH-THHHHHHHHHHHCTTEE----EEEE---C-CSS------------------S-HHHHTTSSSC
T ss_pred CCCcEEEEccHHHHHH-HHHHHHHHHHHHCCCeE----EEEE---e-ccc------------------h-hhHhhcCccE
Confidence 3568999997655443 34446677788899752 5443 1 111 1 3588999999
Q ss_pred EEeeC
Q 020472 144 AVHSM 148 (326)
Q Consensus 144 AVHSl 148 (326)
++...
T Consensus 143 ~i~~~ 147 (306)
T 3hhg_A 143 ALRAG 147 (306)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 99764
No 93
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=52.00 E-value=47 Score=29.38 Aligned_cols=58 Identities=10% Similarity=-0.025 Sum_probs=40.4
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
.++|+||.=.+..- -...+.+..++.||+.. +++... | +.++.++|++|++||+
T Consensus 3 ~G~l~i~gs~t~~~--~l~~~~~~f~~~~P~v~----i~v~~~---~-----------------S~~~~~~l~~g~~Dig 56 (264)
T 4ecf_A 3 GESITAVGSTALQP--LVEAAGEQYTGEHLGTF----INVQGG---G-----------------TGTGLSQIQEGAVQIG 56 (264)
T ss_dssp CEEEEEEECTTTHH--HHHHHHHHHHHHSTTEE----EEEEEE---C-----------------HHHHHHHHHHTSSSEE
T ss_pred CceEEEEecChHHH--HHHHHHHHHHHHCCCce----EEEEeC---C-----------------CHHHHHHHHcCCCchh
Confidence 36799997777643 34567788888899752 443222 1 3567899999999999
Q ss_pred EeeC
Q 020472 145 VHSM 148 (326)
Q Consensus 145 VHSl 148 (326)
+-+.
T Consensus 57 ~~~~ 60 (264)
T 4ecf_A 57 NSDL 60 (264)
T ss_dssp EESS
T ss_pred hccC
Confidence 9753
No 94
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=51.72 E-value=9.5 Score=30.51 Aligned_cols=47 Identities=6% Similarity=0.123 Sum_probs=37.6
Q ss_pred EEecCC-------hHHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 190 IVGTAS-------LRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 190 ~IGTSS-------~RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
+||+++ ++-..+++..+|++++. -.-|+-+.-++.|.+|++|-.|..
T Consensus 11 ~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~-i~~~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 11 RIAVECHTCFDWLMPAMGEFRPMWPQVELD-IVSGFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp EEECCCTTTHHHHHHHHHHHHHHSTTEEEE-EECCCCSCTHHHHHTTSCSEEEES
T ss_pred EEEEehHHHHHHHHHHHHHHHHHCCCcEEE-EecCCHHHHHHHHHcCCcCEEEec
Confidence 677664 34567788899999997 777777777888999999988874
No 95
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=50.61 E-value=8.6 Score=33.87 Aligned_cols=110 Identities=11% Similarity=0.095 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCCCCCCceeeeecCCCCCcceeeccC----ccCcccCC-----CCCEEecCChHH-HH
Q 020472 131 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS----AASLAELP-----AGSIVGTASLRR-KS 200 (326)
Q Consensus 131 ELe~ALl~g~iDiAVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~~----~~~l~dLp-----~ga~IGTSS~RR-~a 200 (326)
++-.+|.+|++|+++-++---|. ..+.+.... +=-...-+++.++ ..+++||. .|.+||+-.--- ..
T Consensus 107 ~~~~~l~~g~~D~~~~~~~~t~e-R~~~~~fs~--P~~~~~~~i~~~~~~~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~ 183 (294)
T 2rc8_A 107 GLVGDLLSGTANMAVTSFSINTA-RSQVIDFTS--PFFSTSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAED 183 (294)
T ss_dssp HHHHHHHHTSCSEECSSCBCCHH-HHTTSEECS--CSEEEEEEEEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHH
T ss_pred HHHHHHHCCCcCEEEeccccCHh-HhceEEEcc--chHhcceEEEEECCCCCcCChhhhhhcCcccCeEEEEEcCChHHH
Confidence 46688999999999865422111 001111100 0000011233322 13456653 277888742221 33
Q ss_pred HHHhhCCCCE--EEec-cCCCHHHHHhhhcc--CCccEEeeehhhhccc
Q 020472 201 QILHRYPSLK--VMEN-FRGNVQTRLRKLNE--RVVQATLLALAGLKRL 244 (326)
Q Consensus 201 QL~~~~Pdl~--v~~~-iRGNV~TRL~KL~~--ge~DAIILA~AGL~RL 244 (326)
.++..+|+.. +. . .-.|.+.-+++|.+ |+.||+|.-..-+..+
T Consensus 184 ~l~~~~~~~~~~i~-~~~~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~ 231 (294)
T 2rc8_A 184 YVRQSFPEMHEYMR-RYNVPATPDGVQYLKNDPEKLDAFIMDKALLDYE 231 (294)
T ss_dssp HHHHHCHHHHHHHG-GGCBSSHHHHHHHHHSSSCCCSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhcCCCHHHHHHHHHhccCceeEEEecHHHHHHH
Confidence 4555566542 11 1 13588999999999 9999999976655443
No 96
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=50.33 E-value=19 Score=28.61 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=34.3
Q ss_pred hHHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 196 LRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 196 ~RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
++.-++++..||++++. -.-++-+.-++.|.+|++|..|..
T Consensus 21 ~~~l~~f~~~~P~i~i~-l~~~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 21 PSMLYAFTAEYPRASVE-FREDTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp HHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHHHHCCCceEE-EEECcHHHHHHHHHcCCccEEEEe
Confidence 35567888999999997 777888888889999999987764
No 97
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=48.58 E-value=60 Score=29.34 Aligned_cols=95 Identities=13% Similarity=0.074 Sum_probs=60.0
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-++.=..+-++.+...|++.+ ++++++.+.+ + -+-+||.+|+||+
T Consensus 163 ~~~~I~ig~~~w~e~~~~~~v~~~~Le~~G------y~Ve~~~~~~-~-------------------~~~~al~~G~iD~ 216 (268)
T 2b4l_A 163 KGDKINLAYVAWDSEIASTNVIGKVLEDLG------YEVTLTQVEA-G-------------------PMWTAIATGSADA 216 (268)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHHHHHHHHT------CEEEEEECCT-T-------------------HHHHHHHHTSSSE
T ss_pred cCcceEEEccCccHHHHHHHHHHHHHHHcC------CceEEEECCh-H-------------------HHHHHHHCCCCeE
Confidence 446899999999888888888888898653 3566655411 1 2447999999999
Q ss_pred EEeeC-CCCC----CCCCCCceeeeecCCCCCcceeeccCc----cCcccC
Q 020472 144 AVHSM-KDVP----TYLPEKTILPCNLQREDVRDAFISLSA----ASLAEL 185 (326)
Q Consensus 144 AVHSl-KDlP----t~lp~gL~iaAv~kReDprD~LV~~~~----~~l~dL 185 (326)
.+-.. ...| .....+++..... -.+.++.|+.+++ ++++||
T Consensus 217 ~~e~w~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~Vp~~~~~i~si~DL 266 (268)
T 2b4l_A 217 SLSAWLPNTHKAYAAKYKGKYDDIGTS-MTGVKMGLVVPQYMKNVNSIEDL 266 (268)
T ss_dssp EEEEEETTTTHHHHHHTTTSEEEEEEE-EEEEEEEEEEETTCTTCCBGGGG
T ss_pred EehhhcCcCcHHHHHHHcCCeEEccCC-CCCCeEEEEEehhhcccCCHHHh
Confidence 84432 2222 1134566665554 3444566666543 245555
No 98
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=46.99 E-value=16 Score=29.66 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=36.8
Q ss_pred EEecCCh-------HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 190 IVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 190 ~IGTSS~-------RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
+||++.. .--..+++.||++++. -.-++-+.-++.|.+|++|..|..
T Consensus 8 rIg~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 8 HIGLIPTVGPYLLPHIIPMLHQTFPKLEMY-LHEAQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp EEEECTTTHHHHHHHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHHTSCSEEEEE
T ss_pred EEEeccchhhhhhhHHHHHHHHHCCCeEEE-EEECChHHHHHHHHcCCeeEEEec
Confidence 6776532 2345678899999997 777898888999999999987764
No 99
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=46.51 E-value=20 Score=28.83 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=39.5
Q ss_pred CEEecCCh-------HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeeh
Q 020472 189 SIVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 238 (326)
Q Consensus 189 a~IGTSS~-------RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~ 238 (326)
-+||++.. .-..+++..+|++++. -.-++-+.-++.|.+|++|..|...
T Consensus 13 l~Ig~~~~~~~~~l~~~l~~~~~~~P~v~i~-~~~~~~~~~~~~l~~g~~Dl~i~~~ 68 (232)
T 3ho7_A 13 LNIAVLPTIAPYLLPRVFPIWKKELAGLEIH-VSEMQTSRCLASLLSGEIDMAIIAS 68 (232)
T ss_dssp EEEEECTTTHHHHHHHHHHHHHHHSTTEEEE-EEECCHHHHHHHHHHTSCSEEEESS
T ss_pred EEEEeccccchhhhHHHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHcCCCCEEEEcC
Confidence 37776653 3457788899999998 7778999999999999999988754
No 100
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=45.03 E-value=3.8 Score=36.37 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=22.3
Q ss_pred CCCHHHHHhhhccCCccEEeeehhhhc
Q 020472 216 RGNVQTRLRKLNERVVQATLLALAGLK 242 (326)
Q Consensus 216 RGNV~TRL~KL~~ge~DAIILA~AGL~ 242 (326)
-.|.+.-+++|.+|+.||+|.-..-+.
T Consensus 203 ~~~~~~~~~~l~~G~vDa~i~d~~~~~ 229 (292)
T 1pb7_A 203 YESAAEAIQAVRDNKLHAFIWDSAVLE 229 (292)
T ss_dssp BSSHHHHHHHHHTTSCSEEEEEHHHHH
T ss_pred CCCHHHHHHHHHcCCceEEEEcHHHHH
Confidence 358899999999999999998665443
No 101
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=44.75 E-value=49 Score=30.35 Aligned_cols=188 Identities=12% Similarity=0.100 Sum_probs=106.9
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEEE
Q 020472 66 AIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAV 145 (326)
Q Consensus 66 ~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiAV 145 (326)
++|+||+-+..=..+=++.++..|++.+ +. +++++. ..|+. .-+.+||.+|+||+.+
T Consensus 12 ~~I~ig~~~~te~~il~~i~~~~Le~~~-G~----~V~~~~--~lg~~----------------~~~~~al~~G~iDv~~ 68 (284)
T 3r6u_A 12 QTIKIGAQSMSESEIIASMLGQLIEHHT-DL----KTTTIK--NLGSN----------------AVQQQALMNGEIDIAA 68 (284)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHS-SC----CEEEEE--EECSH----------------HHHHHHHHTTSCSEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHhcC-CC----CeEEEe--cCCch----------------HHHHHHHHcCCCCEEe
Confidence 6799999999999999999999999863 22 466543 22332 2356899999999999
Q ss_pred ---------eeCCCCCCCCC------------C--CceeeeecCCCCCcceeeccC-------ccCcccCCCC---CEEe
Q 020472 146 ---------HSMKDVPTYLP------------E--KTILPCNLQREDVRDAFISLS-------AASLAELPAG---SIVG 192 (326)
Q Consensus 146 ---------HSlKDlPt~lp------------~--gL~iaAv~kReDprD~LV~~~-------~~~l~dLp~g---a~IG 192 (326)
--+++-|..-| + |+....... .+-.+.|+.++ -++++||.+. .++|
T Consensus 69 ~eytGt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~laV~~~~a~~~~l~sisDL~~~~~~~~~g 147 (284)
T 3r6u_A 69 TRYTGDALTGTLRMEPEKDPDKALALTQREFKKRYDLKWYDSYG-FDNTYAFTVSKELADQYHLETVSDVKKWAPQLKLG 147 (284)
T ss_dssp EEEHHHHHHHTTCCCCCCSHHHHHHHHHHHHHHHHCEEECCCCS-CBCCEEEEEEHHHHHHHTCCBSGGGGGGGGGCEEE
T ss_pred hhccchhHHHhcCCCCCCCHHHHHHHHHHHhHhhcCeEEeccCC-cCCeEEEEEeHHHHhHcCCCCHHHHHhhhhceeec
Confidence 34453222111 1 444333222 23366777653 3567777543 4777
Q ss_pred cCCh--HHH-----HHHHhhCCCCE-EEeccCCCHHHHHhhhccCCccEEeeehh--hhcccCCCccceeeecCCCCCCC
Q 020472 193 TASL--RRK-----SQILHRYPSLK-VMENFRGNVQTRLRKLNERVVQATLLALA--GLKRLSMTENVTNILSVDDMLPA 262 (326)
Q Consensus 193 TSS~--RR~-----aQL~~~~Pdl~-v~~~iRGNV~TRL~KL~~ge~DAIILA~A--GL~RLgl~~~i~~~L~~~~~lPA 262 (326)
..+- -|. ...+.+--++. +. .+-.- .+-+.+.+|+++.+..=.- -+.+.+|. ..=|+..+.|+
T Consensus 148 ~~~ef~~r~G~G~~~l~~~YGl~~~~~~-~~~~g--~~~~A~~~~~~~v~~~wsp~~~~~~~dL~----~LeD~k~~fp~ 220 (284)
T 3r6u_A 148 VDNYWMKLKGNGYQDFTKTYGMTFGGTY-PMQIG--LVYDAVKSGKMDIVLAYSTDGRIKSYGLK----MLKDDKQFFPP 220 (284)
T ss_dssp ECTTGGGCSSSSHHHHHHHHCCCCSEEE-ECCGG--GHHHHHHHTSCSEEEEETTCHHHHHTTEE----ECBCTTCCSCC
T ss_pred cCcccccCchhHHHHHHHHcCCCccccc-ccCHH--HHHHHHHcCCCeEEEEeCCCchhhcCCce----EcCCCcccCCc
Confidence 6542 111 12223322332 44 44332 3456778899987654221 24444331 11134444443
Q ss_pred cccceeeeEeec----CchhHHhhhhccc
Q 020472 263 VAQGAIGIACRS----NDEKMVPFTTHSQ 287 (326)
Q Consensus 263 ~GQGaLAVe~R~----dD~~~~~lL~~~~ 287 (326)
-+ +...+|+ +.+++.++|+.+.
T Consensus 221 -~~--v~~vvr~~~~~~~P~~~~~L~~l~ 246 (284)
T 3r6u_A 221 -YD--CSPVVPEKVLKEHPELEGIIKKML 246 (284)
T ss_dssp -CB--EEEEEEHHHHHHSTTHHHHHHTTT
T ss_pred -cc--eeEEEcHHhhhHCHHHHHHHHHHH
Confidence 23 4456675 3568899998885
No 102
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=43.87 E-value=16 Score=29.38 Aligned_cols=136 Identities=10% Similarity=-0.000 Sum_probs=70.7
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+=.+.. ..---.+...+++.||++. +++. + +|.. .+|.+|++|+
T Consensus 10 ~~g~l~Ig~~~~~~-~~~l~~~l~~f~~~~P~i~----l~i~---~-~~~~-------------------~~l~~g~~Dl 61 (219)
T 3kos_A 10 TQEKLKIGVVGTFA-IGCLFPLLSDFKRSYPHID----LHIS---T-HNNR-------------------VDPAAEGLDY 61 (219)
T ss_dssp -CEEEEEEEEHHHH-HHTHHHHHHHHHHHCTTEE----EEEE---E-ECSC-------------------CCHHHHTCSE
T ss_pred cCCcEEEEeCHHHH-HHHHHhHHHHHHHHCCCce----EEEE---e-ccCc-------------------cccccCCccE
Confidence 45789999977643 3344556778888999752 4442 2 2210 1467999999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeecc-----CccCcccCCCCCEEecCChHHHHH-HHhhC--CCC--EEEe
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISL-----SAASLAELPAGSIVGTASLRRKSQ-ILHRY--PSL--KVME 213 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~-----~~~~l~dLp~ga~IGTSS~RR~aQ-L~~~~--Pdl--~v~~ 213 (326)
|+-.... .++++....+. .++- ++|+. +..++++|..-..|..+....-.+ +.... +.. ++.
T Consensus 62 ~i~~~~~----~~~~~~~~~l~--~~~~-~~v~~p~~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 133 (219)
T 3kos_A 62 TIRYGGG----AWHDTDAQYLC--SALM-SPLCSPTLASQIQTPADILKFPLLRSYRRDEWALWMQTVGEAPPSPTHNV- 133 (219)
T ss_dssp EEEEECS----CCTTEEEEEEE--ECCE-EEEBCHHHHTTCSSGGGGGGSCEEEESCTTHHHHHHHHTTCCCCCTTSCE-
T ss_pred EEEeCCC----CCCCceEEEec--ccce-EEEeChHHhhccCCHHHHhcCceeccCCccCHHHHHHHcCCCCCccccce-
Confidence 9975421 13455433222 1222 22221 223566665555555332221111 22222 221 121
Q ss_pred ccCCCHHHHHhhhccCCccEEe
Q 020472 214 NFRGNVQTRLRKLNERVVQATL 235 (326)
Q Consensus 214 ~iRGNV~TRL~KL~~ge~DAII 235 (326)
-.=.|+++-++-+.+|..=|++
T Consensus 134 ~~~~~~~~~~~~v~~g~Gi~~l 155 (219)
T 3kos_A 134 MVFDSSVTMLEAAQAGMGVAIA 155 (219)
T ss_dssp EEESCHHHHHHHHHTTSCBEEE
T ss_pred eEEccHHHHHHHHHcCCCeEee
Confidence 1236899988888888544443
No 103
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=41.63 E-value=56 Score=27.31 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=37.2
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+-.+.... -.-.+...+.+.||++. +++. + +|.. ..|++|++|+
T Consensus 86 ~~~~l~I~~~~~~~~~-~l~~~l~~f~~~~P~v~----i~~~---~-~~~~-------------------~~l~~~~~Dl 137 (300)
T 3mz1_A 86 PKGRLRVETASAFANL-VIIPALPEFHKKYPDIQ----IDLG---V-SDRT-------------------IDYLAENVDC 137 (300)
T ss_dssp CCEEEEEEECHHHHHH-THHHHHHHHHHHCTTEE----EEEE---E-CCCC---------------------CCCTTCCE
T ss_pred CCceEEEEecHHHHHH-HHHHHHHHHHHHCCCcE----EEEE---e-CCCc-------------------ccccccCCcE
Confidence 3568999997765443 34456677788899752 5442 2 2221 1478999999
Q ss_pred EEeeCC
Q 020472 144 AVHSMK 149 (326)
Q Consensus 144 AVHSlK 149 (326)
++....
T Consensus 138 ~i~~~~ 143 (300)
T 3mz1_A 138 AIRAGT 143 (300)
T ss_dssp EEEESS
T ss_pred EEEecc
Confidence 998743
No 104
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=40.31 E-value=27 Score=29.22 Aligned_cols=140 Identities=14% Similarity=0.030 Sum_probs=71.5
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcE
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDI 143 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDi 143 (326)
..++|+||+=.+....+= -.+...+.+.||++. +++. .+|.. +.|.+|++|+
T Consensus 89 ~~~~l~Ig~~~~~~~~~l-~~~l~~f~~~~P~v~----i~~~----~~~~~-------------------~~l~~~~~Dl 140 (291)
T 3szp_A 89 ASGRIRISAPSNLTKRMM-MPMFNAFMEKYPDIH----IELM----MSNQA-------------------DDLDPTEWDV 140 (291)
T ss_dssp SCEEEEEEEETTTHHHHT-HHHHHHHHHHCTTEE----EEEE----EECSC-------------------SCCCGGGCSE
T ss_pred CceEEEEeccHHHHHHHH-HHHHHHHHHHCCCeE----EEEE----EecCc-------------------cCccccCceE
Confidence 456899999887655443 445567778899752 5544 12211 2467899999
Q ss_pred EEeeCCCCCCCCCCCceeeeecCCCCCcceeecc-------CccCcccCCCCCEEecCChHHHHHHH------hhCCCCE
Q 020472 144 AVHSMKDVPTYLPEKTILPCNLQREDVRDAFISL-------SAASLAELPAGSIVGTASLRRKSQIL------HRYPSLK 210 (326)
Q Consensus 144 AVHSlKDlPt~lp~gL~iaAv~kReDprD~LV~~-------~~~~l~dLp~ga~IGTSS~RR~aQL~------~~~Pdl~ 210 (326)
++..... .++++...-+. +++--+++.+ ...++++|..-..|..+...+..... ...|+..
T Consensus 141 ~i~~~~~----~~~~l~~~~l~--~~~~~~v~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T 3szp_A 141 IFRVGPQ----RDSSLIARKIG--EVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVNSDRGR 214 (291)
T ss_dssp EEEESCC----CCTTCEEEEEE--EECEEEEECHHHHHHSCCCSSGGGGGGSCEEEETTBCSEEEECTTSCEEEECCCCS
T ss_pred EEEecCC----CCCCeeEEEec--ccceEEEECHHHHHhcCCCCCHHHHhcCCeeecCCCCceeEEcCCCceeEEeccCc
Confidence 9987632 24555433322 2222222221 22345666555555532211110000 0123322
Q ss_pred EEeccCCCHHHHHhhhccCCccEEeeehhhh
Q 020472 211 VMENFRGNVQTRLRKLNERVVQATLLALAGL 241 (326)
Q Consensus 211 v~~~iRGNV~TRL~KL~~ge~DAIILA~AGL 241 (326)
+. -.|+++-+.-+.+|..= .+++..-+
T Consensus 215 ~~---~~~~~~~~~~v~~g~Gi-ailp~~~~ 241 (291)
T 3szp_A 215 FQ---ASALNVVRSACSEGLGI-TLMPDVML 241 (291)
T ss_dssp EE---ESSHHHHHHHHHTTCCE-EEEEGGGT
T ss_pred eE---ECcHHHHHHHHHcCCcE-EEccHHHH
Confidence 22 34677777777777543 34444433
No 105
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=40.09 E-value=60 Score=29.57 Aligned_cols=99 Identities=16% Similarity=0.068 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceee---eecCCCCCcceeeccCccCcccCCCCCEEecCChHHHHH-----
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILP---CNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQ----- 201 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~ia---Av~kReDprD~LV~~~~~~l~dLp~ga~IGTSS~RR~aQ----- 201 (326)
.+|-++|++|++|++.=|.=..+. ..+.+.+. ++.......-++|..+ ..+.+| .+|++..-.....
T Consensus 48 ~~L~~~l~~G~lDi~~vs~~~~~~-~~~~~~~l~~~~i~a~g~v~s~~lv~~-~~i~~L---k~Va~~~~s~t~~~Ll~~ 122 (301)
T 2i6e_A 48 TQMNAALLSGEVDIANVSAVEFIR-HADTLAALPDFSVAVLGPVYSVNLFHT-CPLPEL---RRVALTSQSAMSVALLEV 122 (301)
T ss_dssp HHHHHHHHHSSCSEEEEEHHHHHH-TTTTEEEEEEEEEEESSCCSSEEEEES-SCGGGC---CEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEeCHHHHHh-hhCcEEEecCeEEEeeCCcceEEEEeC-CCHHHc---CEEEECCCChHHHHHHHH
Confidence 478899999999999666532222 23334322 4555566666666544 567888 6888765444322
Q ss_pred -HHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeeh
Q 020472 202 -ILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 238 (326)
Q Consensus 202 -L~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~ 238 (326)
|....-+.+++ ++-.....- .+|++||.++.-
T Consensus 123 lL~~~Gl~~~~~-~~~~~~~~~----l~~~~da~l~ig 155 (301)
T 2i6e_A 123 LLRQKGLSPVLE-RAEGTAESL----LAAGYDGVLRIG 155 (301)
T ss_dssp HHHHTTCCCEEE-ECCSCHHHH----HTTTCSEEEEES
T ss_pred HHHHCCCCcEEE-eCCchHHHH----hccCcCEEEEEC
Confidence 22211223566 555443332 248899988753
No 106
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=39.71 E-value=71 Score=29.20 Aligned_cols=191 Identities=13% Similarity=0.103 Sum_probs=106.1
Q ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhhCCC-cccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCc
Q 020472 64 KVAIIRIGTRGSPLALAQAHETRNKLMALHPE-LAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQID 142 (326)
Q Consensus 64 ~~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~-l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iD 142 (326)
..++|+||+-...=..+=++.++..|++.+.+ + +++++. ..|+. .-+.+||.+|+||
T Consensus 7 ~~~~I~ig~~~~te~~il~~i~~~~Le~~~G~~~----~V~~~~--~lg~~----------------~~~~~al~~G~iD 64 (282)
T 3o66_A 7 TKNDVKITALSTSESQIISHMLRLLIEHDTHGKI----KPTLVN--NLGSS----------------TIQHNALINGDAN 64 (282)
T ss_dssp CCCCCEEEEESSHHHHHHHHHHHHHHHHHTTTSC----CCEEEE--EESSH----------------HHHHHHHHHTSCS
T ss_pred CCCCEEEEcCCCcHHHHHHHHHHHHHHhccCCce----eEEEEe--cCCCc----------------HHHHHHHHcCCCC
Confidence 34679999999999999999999999986311 2 355543 11321 2356899999999
Q ss_pred EEE-e----e----CCCCCCCCC------------C--CceeeeecCCCCCcceeeccC-------ccCcccCCCC---C
Q 020472 143 IAV-H----S----MKDVPTYLP------------E--KTILPCNLQREDVRDAFISLS-------AASLAELPAG---S 189 (326)
Q Consensus 143 iAV-H----S----lKDlPt~lp------------~--gL~iaAv~kReDprD~LV~~~-------~~~l~dLp~g---a 189 (326)
+.+ - . +|+-|..-| + |+...... -.+-.++|+.++ -++++||.+. .
T Consensus 65 v~~~eytGt~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~n~~~laV~~~~a~~~~l~sisDL~~~~~~~ 143 (282)
T 3o66_A 65 ISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSY-GFANTYAFMVTKETAKKYHLETVSDLAKHSKDL 143 (282)
T ss_dssp EEEEEEHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHHHSEEECCCC-SCBCCEEEEECHHHHHHHTCSBSGGGTTTGGGC
T ss_pred EeehhccchhhHhhcCCCCCCCHHHHHHHHHHHhhhccCeEEeccC-CcCCeEEEEEeHHHHhHcCCCCHHHHHhcccce
Confidence 999 1 2 443232111 1 33322211 122356676543 3567888653 4
Q ss_pred EEecCCh--HHH----HHHH-hhCCCCE-EEeccCCCHHHHHhhhccCCccEEeeeh--hhhcccCCCccceeeecCCCC
Q 020472 190 IVGTASL--RRK----SQIL-HRYPSLK-VMENFRGNVQTRLRKLNERVVQATLLAL--AGLKRLSMTENVTNILSVDDM 259 (326)
Q Consensus 190 ~IGTSS~--RR~----aQL~-~~~Pdl~-v~~~iRGNV~TRL~KL~~ge~DAIILA~--AGL~RLgl~~~i~~~L~~~~~ 259 (326)
++|..+- -|. ..+. .+--++. +. .+-.- .+-+.+.+|+++.+..=. .-+.+.+|. ..=||..+
T Consensus 144 ~~g~~~ef~~r~gdG~~~l~~~Ygl~~~~~~-~~d~g--~~~~A~~~~~~~v~~~wsp~~~~~~~dL~----~LeD~k~~ 216 (282)
T 3o66_A 144 RLGMDSSWMNRKGDGYEGFKKEYGFDFGTVR-PMQIG--LVYDALNTEKLDVALGYSTDGRIAAYDLK----VLKDDKQF 216 (282)
T ss_dssp EEEEEGGGCC--CCSHHHHHHHHCCCCSEEE-EECGG--GHHHHHHTTSCSEEEEETTCHHHHHTTCE----ECBCTTCC
T ss_pred EEecCcccccCchhHHHHHHHHcCCCCcccc-ccCHH--HHHHHHHcCCCeEEEEeCCCchhhhcCce----EcCCCccc
Confidence 7775442 122 1233 3322342 44 44322 456677889998775422 224444432 11144445
Q ss_pred CCCcccceeeeEeec----CchhHHhhhhccc
Q 020472 260 LPAVAQGAIGIACRS----NDEKMVPFTTHSQ 287 (326)
Q Consensus 260 lPA~GQGaLAVe~R~----dD~~~~~lL~~~~ 287 (326)
.|+ -++ ...+|+ +.+++.++|+.+.
T Consensus 217 fp~-~~~--~~vvr~~~~~~~P~~~~~L~~l~ 245 (282)
T 3o66_A 217 FPP-YAA--SAVATNELLRQHPELKTTINKLT 245 (282)
T ss_dssp SCC-CBE--EEEEEHHHHHHCTHHHHHHHTTT
T ss_pred ccc-cce--eEEEcHHHHhHCHHHHHHHHHHh
Confidence 453 344 355664 3578889998874
No 107
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=39.29 E-value=49 Score=30.15 Aligned_cols=145 Identities=10% Similarity=-0.020 Sum_probs=78.8
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
..+|+||+-...=..+.++.+...|++.+ ++++++.. ++ +..+-+||.+|+||+.
T Consensus 7 ~~~I~ig~~~~~e~~~~~~i~~~~Le~~G------y~Ve~~~~---~~----------------~~~~~~Al~~G~iDi~ 61 (309)
T 1r9l_A 7 GITVNPVQSTITEETFQTLLVSRALEKLG------YTVNKPSE---VD----------------YNVGYTSLASGDATFT 61 (309)
T ss_dssp TCEECEEECSCGGGHHHHHHHHHHHHHTT------CEECCCEE---CC----------------HHHHHHHHHHTSSCEE
T ss_pred CceEEEeecCccHHHHHHHHHHHHHHHcC------CCeEEeec---Cc----------------hHHHHHHHhcCCceEE
Confidence 45799999888777788888888888642 23443221 11 1245679999999999
Q ss_pred EeeCCCCC-C---CC--CCCceeeeecCCCCCcceeeccC-------ccCcccCCC--------------CCEEecC--C
Q 020472 145 VHSMKDVP-T---YL--PEKTILPCNLQREDVRDAFISLS-------AASLAELPA--------------GSIVGTA--S 195 (326)
Q Consensus 145 VHSlKDlP-t---~l--p~gL~iaAv~kReDprD~LV~~~-------~~~l~dLp~--------------ga~IGTS--S 195 (326)
+--.-..+ . .. ..++...+... ..-.+.++.++ -++++||.. |-++|.. +
T Consensus 62 ~e~w~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~l~V~~~~a~~~~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~ 140 (309)
T 1r9l_A 62 AVNWTPLHDNMYEAAGGDKKFYREGVFV-NGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGW 140 (309)
T ss_dssp EEEEETTTHHHHHHTTGGGTEEECSCSE-EEEEEEEEEEHHHHHHHTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTS
T ss_pred eccccCccHHHHHHhhcCCcEEEecccC-CCceEEEEEchhhhhhcCCCCHHHHcCchHHHHcCCCCCCCceEEecCCCc
Confidence 74221110 0 01 11343333221 22345566543 257888851 2356553 2
Q ss_pred -hHH--HHHHHhhCCCCEEEeccCCCH----HHHHhhhccCCccEEee
Q 020472 196 -LRR--KSQILHRYPSLKVMENFRGNV----QTRLRKLNERVVQATLL 236 (326)
Q Consensus 196 -~RR--~aQL~~~~Pdl~v~~~iRGNV----~TRL~KL~~ge~DAIIL 236 (326)
.++ ...++.+-=+.++. .+.++- ..-.+.+.+|+.|++..
T Consensus 141 ~~~~~~~~~l~~yGL~~~~~-~~~~s~~~~~~~~~~A~~~g~~~v~~~ 187 (309)
T 1r9l_A 141 GCEGAINHQLAAYELTNTVT-HNQGNYAAMMADTISRYKEGKPVFYYT 187 (309)
T ss_dssp HHHHHHHHHHHHTTCTTTEE-EECSCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred chhHHHHHHHHhcCCCCceE-EcCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 243 23344332221354 556653 12226778999988866
No 108
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=39.02 E-value=2.1e+02 Score=26.31 Aligned_cols=142 Identities=12% Similarity=0.091 Sum_probs=81.1
Q ss_pred ceEEEEeCC----CHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCC
Q 020472 66 AIIRIGTRG----SPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQI 141 (326)
Q Consensus 66 ~~IrIGTR~----S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~i 141 (326)
.++|+|+=. +.... ..+...+.+++...+ ++++..... |- +|+. .|+=++|..|.+
T Consensus 32 ~~l~~~~~~~~~~~~~~~-~~~~fa~~v~e~s~G-----~v~i~~~~~-g~---------Lg~~----~~~~eav~~G~i 91 (365)
T 2hzl_A 32 VTWRLASSFPKSLDTIFG-GAEVLSKMLSEATDG-----NFQIQVFSA-GE---------LVPG----LQAADAVTEGTV 91 (365)
T ss_dssp CEEEEEESSCTTCTTTTH-HHHHHHHHHHHHTTT-----SSEEEEECT-TT---------SSCG----GGHHHHHHTTSS
T ss_pred eEEEEeccCCCCCCchhH-HHHHHHHHHHHhcCC-----eEEEEEecC-Cc---------ccCH----HHHHHHHHcCcc
Confidence 468999843 33332 344577888876543 355544432 21 1221 466689999999
Q ss_pred cEEEeeC-------------CCCCCCC-----------------------CCCceeeeecCCCCCcceeec--cCccCcc
Q 020472 142 DIAVHSM-------------KDVPTYL-----------------------PEKTILPCNLQREDVRDAFIS--LSAASLA 183 (326)
Q Consensus 142 DiAVHSl-------------KDlPt~l-----------------------p~gL~iaAv~kReDprD~LV~--~~~~~l~ 183 (326)
|+++-+. .++|-.. ..|+.+.+..... ++ .++. +.-++++
T Consensus 92 D~~~~~~~~~~~~~p~~~~~~~lPf~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~l~~~~~g-~~-~~~~~~~pI~s~~ 169 (365)
T 2hzl_A 92 ECCHTVGYYYWGKDPTFALAAAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGGNTG-VQ-MGGWFRREINTVA 169 (365)
T ss_dssp SEEEECGGGGTTTCTHHHHTTCCTTCCCHHHHHHHHHHSSHHHHHHHHHGGGTEEEEEEEECC-SB-CCCEESSCCCSTG
T ss_pred ceeecchhhhcccChhHhhhhcCCCCCCHHHHHHHHHcCChHHHHHHHHHHCCCEEEeccCCC-cc-cceeecCCCCChH
Confidence 9998874 2566421 1255554443221 22 2332 2345788
Q ss_pred cCCCCCEEecCChHHHHHHHhhCCCCEEEeccCC-CHHHHHhhhccCCccEEeee
Q 020472 184 ELPAGSIVGTASLRRKSQILHRYPSLKVMENFRG-NVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 184 dLp~ga~IGTSS~RR~aQL~~~~Pdl~v~~~iRG-NV~TRL~KL~~ge~DAIILA 237 (326)
|| +|.+|.|...- ...++.+ ....+ ++-. .+-+ -|.+|.+||....
T Consensus 170 DL-kG~KiR~~~~~-~~~~~~l--Ga~pv-~~~~~e~y~---ALq~G~VDg~~~~ 216 (365)
T 2hzl_A 170 DM-QGLKMRVGGFA-GKVMERL--GVVPQ-QIAGGDIYP---ALEKGTIDATEWV 216 (365)
T ss_dssp GG-TTCEEECCTTH-HHHHHTT--TCEEE-CCCTTSHHH---HHHHTSCSEECCS
T ss_pred Hh-CCCEEecCCcH-HHHHHHc--CCcce-ecCHHHHHH---HHhCCCcceeecc
Confidence 88 79999987422 2223332 56666 6643 4544 4568999998753
No 109
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=37.97 E-value=38 Score=29.44 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=34.2
Q ss_pred HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 197 RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 197 RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
.....++..||++++. -.-++-+.-+..|.+|++|..|..
T Consensus 107 ~~l~~f~~~~P~v~i~-l~~~~~~~~~~~l~~g~~Dlai~~ 146 (312)
T 2h9b_A 107 RIIHLYRQAHPNLRIE-LYEMGTKAQTEALKEGRIDAGFGR 146 (312)
T ss_dssp HHHHHHHHTCTTCEEE-EEECCHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHcCCCCEEEEe
Confidence 4567788899999997 777888999999999999988864
No 110
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=37.04 E-value=35 Score=27.85 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=38.3
Q ss_pred CEEecCCh-------HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 189 SIVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 189 a~IGTSS~-------RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
-+||+++. +--++++..||++++. -.-++-++-++.|.+|++|-.|..
T Consensus 16 lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 16 LTIATTHTQARYSLPEVIKAFRELFPEVRLE-LIQGTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp EEEEECHHHHHHTHHHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHHTSCSEEEES
T ss_pred EEEeeccchHHHHHHHHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHcCCccEEEEe
Confidence 47887752 3456778899999997 777888888899999999987764
No 111
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=36.64 E-value=36 Score=29.92 Aligned_cols=40 Identities=5% Similarity=0.084 Sum_probs=34.3
Q ss_pred HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 197 RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 197 RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
....+++..||++++. -.-++-+..+..|.+|++|..|..
T Consensus 107 ~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~~Dlai~~ 146 (313)
T 2h98_A 107 EIIYLFRQQNPEIHIE-LIECGTKDQINALKQGKIDLGFGR 146 (313)
T ss_dssp HHHHHHHHHCTTSEEE-EEECCHHHHHHHHHHTSCSEEEES
T ss_pred HHHHHHHHHCCCeEEE-EEeCChHHHHHHHHcCCCCEEEEe
Confidence 4567788899999997 777888999999999999988764
No 112
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=36.25 E-value=35 Score=28.01 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=39.9
Q ss_pred CEEecCCh-------HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeeh
Q 020472 189 SIVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 238 (326)
Q Consensus 189 a~IGTSS~-------RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~ 238 (326)
-+||+++. +...+++..+|++++. -.-++-..=+..|.+|++|..|...
T Consensus 29 l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~-i~~~~~~~~~~~L~~g~~Dl~i~~~ 84 (238)
T 3onm_A 29 LIIGASDDTADTLLPFLLNRVATLYPRLAID-VRVKRSPFIADMLSSGEVDLAITTA 84 (238)
T ss_dssp EEEEECHHHHTTHHHHHHHHHHHHCTTCCEE-EEECCHHHHHHHHHHTSCSEEEECS
T ss_pred EEEeccchhhHHHHHHHHHHHHHHCCCcEEE-EEECCHHHHHHHHHCCCccEEEEec
Confidence 37887653 4567888899999997 7778888888999999999988754
No 113
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=36.07 E-value=1.6e+02 Score=25.95 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=40.2
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCCCcEE
Q 020472 65 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIA 144 (326)
Q Consensus 65 ~~~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~iDiA 144 (326)
...|+|+.=.+..-+ ...+.+..++.||+.. +++... | +.++.++|++|++||+
T Consensus 3 ~~~l~i~gStt~~~~--~~~~~~~F~~~~P~v~----i~v~~~---g-----------------S~~gi~~l~~g~~Dig 56 (265)
T 4exl_A 3 GESITAVGSTALQPL--VEVAADEFGTIHVGKT----VNVQGG---G-----------------SGTGLSQVQSGAVDIG 56 (265)
T ss_dssp CCEEEEEECTTHHHH--HHHHHHHHHHHSTTCE----EEEEEE---C-----------------HHHHHHHHHTTSSSEE
T ss_pred CceEEEEeeCcHHHH--HHHHHHHHHHHCCCce----EEEeeC---C-----------------cHHHHHHHHcCCCccc
Confidence 357899887776533 4567778888899752 444322 1 3467889999999999
Q ss_pred Eee
Q 020472 145 VHS 147 (326)
Q Consensus 145 VHS 147 (326)
+-+
T Consensus 57 ~~~ 59 (265)
T 4exl_A 57 NSD 59 (265)
T ss_dssp EES
T ss_pred ccc
Confidence 865
No 114
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=35.71 E-value=21 Score=29.37 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=36.9
Q ss_pred CEEecCCh-------HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 189 SIVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 189 a~IGTSS~-------RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
.+||+++. +--.+++..||++++. -..+|-+.-++.|.+|++|-.|..
T Consensus 10 l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~l~-l~~~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 10 FNLAMTDIGEMYFMPPLMEALAQRAPHIQIS-TLRPNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHCTTCEEE-EECCCTTTHHHHHHHTSSCEEEEC
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHCCCCEEE-EEeCCcccHHHHHhCCCceEEEec
Confidence 37887643 2345667789999997 777887788889999999987753
No 115
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=35.18 E-value=34 Score=27.01 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=37.6
Q ss_pred EEecCCh-------HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeeh
Q 020472 190 IVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 238 (326)
Q Consensus 190 ~IGTSS~-------RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~ 238 (326)
+||+++. .-..+++..+|++++. -.-++-+.-++.|.+|++|..|...
T Consensus 7 ~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~-i~~~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 7 KLGLIFTVAPYLLPKLIVSLRRTAPKMPLM-LEENYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHSTTCCEE-EEEECHHHHHHHHHHTSSSEEEEES
T ss_pred EEEEcchhhHHHHHHHHHHHHHHCCCcEEE-EEeCCcHHHHHHHHcCCCCEEEEcC
Confidence 5665543 3356778889999997 7778888889999999999888754
No 116
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=34.30 E-value=50 Score=27.63 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=38.1
Q ss_pred CEEecCCh------HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeeh
Q 020472 189 SIVGTASL------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 238 (326)
Q Consensus 189 a~IGTSS~------RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~ 238 (326)
-+||+++. .-..++...+|++++. -..++-+.-+++|.+|++|..|...
T Consensus 30 l~Ig~~~~~~~~l~~~l~~f~~~~P~i~v~-i~~~~~~~~~~~l~~g~~Di~i~~~ 84 (290)
T 1twy_A 30 ITISGSTSVARIMDVLAEKYNQQHPETYVA-VQGVGSTAGISLLKKGVADIAMTSR 84 (290)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHCTTCEEE-EEESCHHHHHHHHHTTSCSEEEESS
T ss_pred EEEecCcchHHHHHHHHHHHHhhCCCceEE-EEecCcHHHHHHHhcCCCcEEEecC
Confidence 37887753 2345566789999997 7778888889999999999888653
No 117
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=32.82 E-value=1e+02 Score=24.61 Aligned_cols=54 Identities=7% Similarity=0.048 Sum_probs=34.8
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhhCCCcccCccEEEEEeeccCccccCccccccCCccccHHHHHHHHHcCC-CcEEE
Q 020472 67 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQ-IDIAV 145 (326)
Q Consensus 67 ~IrIGTR~S~LAlaQa~~V~~~L~~~~p~l~~~~~~eiv~i~T~GD~~~~~pL~~iGgkGlFtkELe~ALl~g~-iDiAV 145 (326)
+|+||+=+|. .-. ...+.+..++. |++. +++..- + +.++.+.|.+|+ +|+++
T Consensus 1 ~l~i~~~~~~-~~~-l~~~~~~F~~~-p~i~----v~~~~~---~-----------------s~~l~~~l~~g~~~Dv~~ 53 (231)
T 1atg_A 1 ELKVVTATNF-LGT-LEQLAGQFAKQ-TGHA----VVISSG---S-----------------SGPVYAQIVNGAPYNVFF 53 (231)
T ss_dssp CEEEEEEGGG-HHH-HHHHHHHHHHH-HCCC----EEEEEE---C-----------------HHHHHHHHHTTCCCSEEE
T ss_pred CeEEEEEcch-HHH-HHHHHHHHHhc-cCCe----EEEEEC---C-----------------cHHHHHHHHcCCCCCEEE
Confidence 3788887774 332 33477777777 8753 554321 1 246778888998 99987
Q ss_pred ee
Q 020472 146 HS 147 (326)
Q Consensus 146 HS 147 (326)
-+
T Consensus 54 ~~ 55 (231)
T 1atg_A 54 SA 55 (231)
T ss_dssp CS
T ss_pred eC
Confidence 64
No 118
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=31.61 E-value=46 Score=28.12 Aligned_cols=41 Identities=10% Similarity=0.003 Sum_probs=33.8
Q ss_pred hHHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 196 LRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 196 ~RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
+....+++..+|++++. -.-++-+.-++.|.+|++|..|..
T Consensus 107 ~~~l~~f~~~~P~i~l~-~~~~~~~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 107 PLLLRAFLTSTPTATVS-LTHMTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp HHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHHTSCSEEEES
T ss_pred HHHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHCCCccEEEEe
Confidence 34567788899999997 777888888889999999988764
No 119
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=28.33 E-value=33 Score=30.25 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.2
Q ss_pred CEEecCChHHHHHHHhhCCCCEEE
Q 020472 189 SIVGTASLRRKSQILHRYPSLKVM 212 (326)
Q Consensus 189 a~IGTSS~RR~aQL~~~~Pdl~v~ 212 (326)
-+++++|+||+..|..+.-+++++
T Consensus 5 lILAS~SPrR~eLL~~~gi~f~v~ 28 (189)
T 1ex2_A 5 LILASQSPRRKELLDLLQLPYSII 28 (189)
T ss_dssp EEECCCCHHHHHHHHTTCCCCEEC
T ss_pred EEEECCCHHHHHHHHhCCCCeEEE
Confidence 589999999999999987666654
No 120
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=27.06 E-value=23 Score=31.61 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=22.1
Q ss_pred EEecCChHHHHHHHhhCC--CCEEEeccCCCHHH
Q 020472 190 IVGTASLRRKSQILHRYP--SLKVMENFRGNVQT 221 (326)
Q Consensus 190 ~IGTSS~RR~aQL~~~~P--dl~v~~~iRGNV~T 221 (326)
+++++|+||+.-|..+.| .+.+. -+.-+|+.
T Consensus 13 ILAS~SPrR~eLL~~~~~~~gi~f~-v~~~~iDE 45 (207)
T 2amh_A 13 IIGTSSAFRANVLREHFGDRFRNFV-LLPPDIDE 45 (207)
T ss_dssp EECCCCHHHHHHHHHHHTTTCSEEE-ECCCCCCG
T ss_pred EEccCCHHHHHHHHhhhhcCCCCEE-EECCCCCC
Confidence 789999999999999855 34443 34445554
No 121
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=26.51 E-value=33 Score=29.55 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=34.1
Q ss_pred HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeeeh
Q 020472 197 RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 238 (326)
Q Consensus 197 RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA~ 238 (326)
.....++..+|++++. -..++-+.-+..|.+|++|..|...
T Consensus 109 ~~l~~f~~~~P~i~i~-l~~~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 109 LALASFAREFPDVTVN-VRDGMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp HHHHHHHHHCTTCEEE-EEECCTTTTHHHHHHTSSSEEEEEC
T ss_pred HHHHHHHHHCCCCEEE-EEECCHHHHHHHHHcCCCCEEEecC
Confidence 4567788899999997 7777888888899999999988754
No 122
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=25.87 E-value=58 Score=27.67 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 197 RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 197 RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
..-..++..||++++. -.-+|-+.-++.|.+|++|..|..
T Consensus 112 ~~l~~f~~~~P~i~i~-l~~~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 112 GLIAGFRQAYPGVEIR-IRDGEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp HHHHHHHHHCTTEEEE-EEEECHHHHHHHHHHTSCSEEEEC
T ss_pred HHHHHHHHHCCCeEEE-EEeCCHHHHHHHHHCCCccEEEEe
Confidence 3466788899999997 777888888999999999988864
No 123
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=25.81 E-value=28 Score=30.92 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCCcEEEeeCCCCCCCCCCCceee---eecCCCCCcceeeccCccCcccCCCCCEEecC
Q 020472 130 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILP---CNLQREDVRDAFISLSAASLAELPAGSIVGTA 194 (326)
Q Consensus 130 kELe~ALl~g~iDiAVHSlKDlPt~lp~gL~ia---Av~kReDprD~LV~~~~~~l~dLp~ga~IGTS 194 (326)
.++-++|.+|++|++.=|.=.... ..+.+.+. ++.......-++|..+ ..++|| +|-+||+.
T Consensus 43 ~~l~~al~~G~iDia~~~~~~~~~-~~~~~~il~~~~~~~~g~~~sv~lv~~-~~i~DL-kGKkIav~ 107 (291)
T 2nxo_A 43 EKLSEQLVRGDLDIGPVTLVEFLK-NADDLVAFPDIAVGCDGPVMSCVIVSQ-VPLDRL-DGARVALG 107 (291)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHH-TGGGEEEEEEEEEEESSCCSSEEEEES-SCTTSC-SSSEEEEE
T ss_pred HHHHHHHHcCCCCEeehhHHHHHh-CcccEEEcCCccccccCCceEEEEEeC-CCHHHh-CCCEEEeC
Confidence 468899999999999765210000 11123322 2322222233444433 457888 48888875
No 124
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=24.04 E-value=69 Score=28.01 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=33.9
Q ss_pred hHHHHHHHhhCCCCEEEeccCCCHHHHHhhhccCCccEEeee
Q 020472 196 LRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 237 (326)
Q Consensus 196 ~RR~aQL~~~~Pdl~v~~~iRGNV~TRL~KL~~ge~DAIILA 237 (326)
+..-.++...||++++. -.-++-+.-++.|.+|++|..|..
T Consensus 109 ~~~l~~f~~~~P~v~i~-l~~~~~~~~~~~l~~g~~Dlai~~ 149 (324)
T 1al3_A 109 PGVIKGFIERYPRVSLH-MHQGSPTQIAEAVSKGNADFAIAT 149 (324)
T ss_dssp HHHHHHHHHHCTEEEEE-EEECCHHHHHHHHHTTCCSEEEES
T ss_pred HHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCCceEEEEe
Confidence 34567788899999997 777888888889999999988764
No 125
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=20.96 E-value=2e+02 Score=26.51 Aligned_cols=18 Identities=22% Similarity=0.039 Sum_probs=15.0
Q ss_pred HHhhhccCCccEEeeehh
Q 020472 222 RLRKLNERVVQATLLALA 239 (326)
Q Consensus 222 RL~KL~~ge~DAIILA~A 239 (326)
.+.-|.+|+.||+++...
T Consensus 210 ~~~aL~~G~vDA~~~~~p 227 (365)
T 2de3_A 210 QAAVLASGDVDALYSWLP 227 (365)
T ss_dssp HHHHHHSSSCSEEEEEHH
T ss_pred HHHHHhCCCcCEEEEcch
Confidence 578899999999998653
Done!