RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 020472
         (326 letters)



>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase
           (hydroxymethylbilane synthase), N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 217

 Score =  192 bits (489), Expect = 3e-61
 Identities = 108/213 (50%), Positives = 141/213 (66%), Gaps = 5/213 (2%)

Query: 67  IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKG 126
           ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKG
Sbjct: 3   VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKG 58

Query: 127 LFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELP 186
           LF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+S +  SL  LP
Sbjct: 59  LFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALP 118

Query: 187 AGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSM 246
           AGSIVGT+SLRR+ Q+  R P   ++ + RGNV TRL KL+     A +LA+AGLKRL +
Sbjct: 119 AGSIVGTSSLRRQCQLAERRPD-LIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGL 177

Query: 247 TENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 279
              +   L  +  LPAV QGA+GI CR +D + 
Sbjct: 178 ESRIRAALPPEISLPAVGQGAVGIECRLDDSRT 210


>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 52

 Score = 28.1 bits (63), Expect = 0.17
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 125 KGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKT 159
           KG +TKE D+ LI             +  +L  + 
Sbjct: 3   KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37


>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300,
           N-terminal domain {Bacteroides thetaiotaomicron [TaxId:
           818]}
          Length = 147

 Score = 26.9 bits (58), Expect = 2.2
 Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)

Query: 201 QILHRYPSLKVMENFRGNVQTRLRKLNERV 230
             L RY       N+   V  R + L  R+
Sbjct: 117 SDLFRYD--IFRLNYMNIVSNRAQNLYSRL 144


>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 134

 Score = 26.3 bits (57), Expect = 2.9
 Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 201 QILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLL 236
           ++  +   +  +      +  RLRK   +V     L
Sbjct: 101 ELSQQDSEI--LYTLGSQMADRLRKTTRKVGDLAFL 134


>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 244

 Score = 27.0 bits (59), Expect = 3.0
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 27/108 (25%)

Query: 64  KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIG 123
           KVA++  G RG   +  +A             +  EGA   V+     D+      A++ 
Sbjct: 7   KVALVSGGARGMGASHVRA-------------MVAEGA--KVVFGDILDEEGKAMAAELA 51

Query: 124 GKGLF----------TKEIDEALINS--QIDIAVHSMKDVPTYLPEKT 159
               +           K   +  + +   + + V++   +     E  
Sbjct: 52  DAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDY 99


>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
           TM1171, N-terminal domain {Thermotoga maritima [TaxId:
           2336]}
          Length = 129

 Score = 26.5 bits (57), Expect = 3.1
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 201 QILHRYPSLKVMENFRGNVQTRLRKLNERVVQATL 235
            +L +   L  +  F  +V    R ++E++   T 
Sbjct: 96  DLLMKDREL--LLFFLKDVSEHFRVVSEKLFFLTT 128


>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase
           {Comamonas testosteroni [TaxId: 285]}
          Length = 253

 Score = 26.5 bits (58), Expect = 4.8
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 15/65 (23%)

Query: 64  KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIG 123
           KVA++  G  G  L + +              L  EGA   V      +    Q  A++G
Sbjct: 7   KVALVTGGASGVGLEVVKL-------------LLGEGA--KVAFSDINEAAGQQLAAELG 51

Query: 124 GKGLF 128
            + +F
Sbjct: 52  ERSMF 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,092,270
Number of extensions: 47598
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 13
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)