Query 020477
Match_columns 325
No_of_seqs 453 out of 2296
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.3E-61 2.9E-66 419.5 23.2 222 76-310 1-222 (240)
2 COG1135 AbcC ABC-type metal io 100.0 1.6E-56 3.5E-61 405.9 22.6 221 77-309 1-227 (339)
3 COG1120 FepC ABC-type cobalami 100.0 2.8E-56 6.1E-61 402.4 23.4 223 77-310 2-225 (258)
4 COG1125 OpuBA ABC-type proline 100.0 4E-56 8.7E-61 393.1 21.3 220 77-310 1-222 (309)
5 COG1127 Ttg2A ABC-type transpo 100.0 8.2E-55 1.8E-59 382.5 22.9 224 75-310 6-232 (263)
6 COG1136 SalX ABC-type antimicr 100.0 4.2E-54 9E-59 381.3 25.4 215 77-303 1-221 (226)
7 COG1124 DppF ABC-type dipeptid 100.0 1.3E-54 2.8E-59 382.6 21.8 221 76-309 2-227 (252)
8 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.2E-54 6.9E-59 387.3 23.0 221 75-310 2-224 (254)
9 COG3638 ABC-type phosphate/pho 100.0 2.2E-54 4.7E-59 379.0 19.7 226 76-310 2-234 (258)
10 COG3842 PotA ABC-type spermidi 100.0 2.6E-54 5.7E-59 405.3 21.6 220 75-310 3-223 (352)
11 COG1116 TauB ABC-type nitrate/ 100.0 5.7E-54 1.2E-58 381.3 22.1 209 76-304 2-213 (248)
12 COG3839 MalK ABC-type sugar tr 100.0 1E-53 2.2E-58 399.4 23.7 218 76-310 2-220 (338)
13 COG2884 FtsE Predicted ATPase 100.0 1.2E-53 2.6E-58 362.7 20.1 218 77-307 1-220 (223)
14 COG2274 SunT ABC-type bacterio 100.0 2.6E-52 5.5E-57 425.3 29.0 277 27-321 421-702 (709)
15 COG0411 LivG ABC-type branched 100.0 7.9E-53 1.7E-57 371.5 19.7 229 75-310 2-236 (250)
16 TIGR02314 ABC_MetN D-methionin 100.0 9.3E-52 2E-56 392.2 28.4 221 77-309 1-226 (343)
17 COG1122 CbiO ABC-type cobalt t 100.0 2.3E-51 5E-56 369.2 23.9 220 76-309 2-224 (235)
18 TIGR01978 sufC FeS assembly AT 100.0 6.9E-51 1.5E-55 369.4 26.9 240 78-319 1-240 (243)
19 PRK13537 nodulation ABC transp 100.0 6.9E-51 1.5E-55 381.8 27.7 220 75-310 5-224 (306)
20 COG1118 CysA ABC-type sulfate/ 100.0 7.2E-52 1.6E-56 374.9 19.9 219 77-310 2-224 (345)
21 PRK11650 ugpC glycerol-3-phosp 100.0 7.9E-51 1.7E-55 388.2 27.6 218 77-310 3-221 (356)
22 PRK11432 fbpC ferric transport 100.0 1.3E-50 2.9E-55 385.8 27.9 219 75-310 4-223 (351)
23 cd03261 ABC_Org_Solvent_Resist 100.0 1.7E-50 3.6E-55 365.5 27.1 219 78-309 1-222 (235)
24 TIGR00960 3a0501s02 Type II (G 100.0 1E-50 2.2E-55 362.3 25.4 214 77-302 1-216 (216)
25 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-51 2.8E-56 353.1 18.2 219 77-310 1-219 (245)
26 TIGR03265 PhnT2 putative 2-ami 100.0 1.8E-50 4E-55 385.3 27.8 217 76-309 3-220 (353)
27 COG1131 CcmA ABC-type multidru 100.0 1.8E-50 4E-55 376.3 26.1 220 76-310 3-223 (293)
28 PRK15079 oligopeptide ABC tran 100.0 6E-50 1.3E-54 378.8 28.8 227 74-309 5-247 (331)
29 COG0396 sufC Cysteine desulfur 100.0 4.5E-50 9.8E-55 350.5 25.4 242 76-322 2-243 (251)
30 PRK09452 potA putrescine/sperm 100.0 3.8E-50 8.3E-55 385.3 27.5 221 73-310 10-231 (375)
31 PRK13536 nodulation factor exp 100.0 6.5E-50 1.4E-54 379.7 28.2 221 74-310 38-258 (340)
32 PRK11153 metN DL-methionine tr 100.0 8.1E-50 1.7E-54 380.1 28.4 221 77-309 1-226 (343)
33 COG1137 YhbG ABC-type (unclass 100.0 1.5E-51 3.3E-56 352.3 14.4 223 76-310 3-225 (243)
34 TIGR03258 PhnT 2-aminoethylpho 100.0 7.3E-50 1.6E-54 382.0 27.5 217 77-310 5-225 (362)
35 CHL00131 ycf16 sulfate ABC tra 100.0 1.7E-49 3.7E-54 362.4 28.6 243 75-319 5-247 (252)
36 COG0410 LivF ABC-type branched 100.0 3.8E-50 8.2E-55 352.0 23.0 221 76-310 2-223 (237)
37 cd03219 ABC_Mj1267_LivG_branch 100.0 1.1E-49 2.3E-54 360.2 26.5 224 78-309 1-228 (236)
38 PRK10851 sulfate/thiosulfate t 100.0 1.2E-49 2.6E-54 379.6 27.7 221 77-310 2-223 (353)
39 cd03259 ABC_Carb_Solutes_like 100.0 7.9E-50 1.7E-54 355.8 24.8 212 78-306 1-213 (213)
40 cd03218 ABC_YhbG The ABC trans 100.0 1.4E-49 3E-54 358.6 26.4 218 78-309 1-218 (232)
41 COG4988 CydD ABC-type transpor 100.0 1.3E-49 2.8E-54 387.3 27.9 268 31-321 270-549 (559)
42 PRK09536 btuD corrinoid ABC tr 100.0 1.4E-49 3.1E-54 383.8 27.9 224 76-310 2-225 (402)
43 PRK11607 potG putrescine trans 100.0 2.4E-49 5.2E-54 380.3 29.3 220 74-310 16-236 (377)
44 PRK11629 lolD lipoprotein tran 100.0 3.3E-49 7.2E-54 356.7 28.3 220 75-307 3-228 (233)
45 PRK11308 dppF dipeptide transp 100.0 2.8E-49 6.1E-54 373.8 28.9 225 75-309 3-240 (327)
46 TIGR01288 nodI ATP-binding ABC 100.0 2E-49 4.3E-54 371.7 27.4 219 76-310 3-221 (303)
47 KOG0058 Peptide exporter, ABC 100.0 4.6E-50 9.9E-55 397.5 24.0 270 29-317 418-693 (716)
48 cd03265 ABC_DrrA DrrA is the A 100.0 1.9E-49 4.2E-54 355.1 25.8 216 78-309 1-217 (220)
49 COG1117 PstB ABC-type phosphat 100.0 3.4E-50 7.4E-55 347.4 19.1 221 75-309 5-233 (253)
50 PRK11000 maltose/maltodextrin 100.0 2.8E-49 6.1E-54 379.5 27.5 217 77-310 3-220 (369)
51 PRK11022 dppD dipeptide transp 100.0 4.5E-49 9.8E-54 372.4 28.2 225 77-309 3-239 (326)
52 cd03266 ABC_NatA_sodium_export 100.0 3.7E-49 8E-54 352.6 25.9 216 77-306 1-218 (218)
53 cd03258 ABC_MetN_methionine_tr 100.0 4E-49 8.7E-54 355.9 26.3 221 77-309 1-226 (233)
54 COG0444 DppD ABC-type dipeptid 100.0 1.8E-49 3.9E-54 363.8 24.3 226 77-309 1-239 (316)
55 PRK13643 cbiO cobalt transport 100.0 6.3E-49 1.4E-53 365.8 28.2 222 77-310 1-230 (288)
56 PRK11174 cysteine/glutathione 100.0 1E-48 2.2E-53 397.3 32.2 272 29-320 301-577 (588)
57 PRK11831 putative ABC transpor 100.0 5.5E-49 1.2E-53 362.7 27.5 222 75-309 5-229 (269)
58 PRK09580 sufC cysteine desulfu 100.0 7.1E-49 1.5E-53 357.4 27.8 241 77-319 1-241 (248)
59 cd03260 ABC_PstB_phosphate_tra 100.0 5.1E-49 1.1E-53 353.9 26.3 218 78-309 1-225 (227)
60 PRK13647 cbiO cobalt transport 100.0 6.7E-49 1.4E-53 363.1 27.8 220 76-309 3-223 (274)
61 cd03224 ABC_TM1139_LivF_branch 100.0 3.2E-49 7E-54 353.8 24.7 216 78-309 1-217 (222)
62 cd03296 ABC_CysA_sulfate_impor 100.0 4.3E-49 9.4E-54 357.2 25.8 220 77-309 2-222 (239)
63 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.1E-49 6.8E-54 353.0 24.2 212 78-302 1-218 (218)
64 PRK13631 cbiO cobalt transport 100.0 1E-48 2.2E-53 369.0 28.7 224 74-309 18-261 (320)
65 cd03301 ABC_MalK_N The N-termi 100.0 5.1E-49 1.1E-53 350.5 25.0 212 78-306 1-213 (213)
66 PRK09473 oppD oligopeptide tra 100.0 9.5E-49 2.1E-53 370.6 28.3 226 74-309 9-247 (330)
67 PRK11300 livG leucine/isoleuci 100.0 8.3E-49 1.8E-53 358.5 27.0 229 75-310 3-240 (255)
68 TIGR02673 FtsE cell division A 100.0 6.5E-49 1.4E-53 350.0 25.6 212 77-301 1-214 (214)
69 COG3840 ThiQ ABC-type thiamine 100.0 5.3E-50 1.2E-54 338.2 17.5 214 77-309 1-215 (231)
70 cd03263 ABC_subfamily_A The AB 100.0 6.6E-49 1.4E-53 351.4 25.6 217 78-309 1-217 (220)
71 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-48 2.3E-53 355.1 27.2 227 76-310 1-228 (242)
72 TIGR02315 ABC_phnC phosphonate 100.0 3.5E-49 7.5E-54 358.4 23.8 228 77-310 1-232 (243)
73 PRK13651 cobalt transporter AT 100.0 9.7E-49 2.1E-53 366.9 27.6 222 77-310 2-251 (305)
74 PRK13641 cbiO cobalt transport 100.0 1.5E-48 3.3E-53 363.0 28.2 222 77-310 2-231 (287)
75 PRK11614 livF leucine/isoleuci 100.0 8.4E-49 1.8E-53 354.8 25.7 219 76-310 4-223 (237)
76 PRK13637 cbiO cobalt transport 100.0 1.4E-48 3.1E-53 363.2 27.8 223 77-310 2-231 (287)
77 PRK09493 glnQ glutamine ABC tr 100.0 1.3E-48 2.8E-53 354.3 26.8 220 77-309 1-221 (240)
78 PRK13634 cbiO cobalt transport 100.0 1.4E-48 3.1E-53 363.7 27.8 220 78-309 3-231 (290)
79 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.6E-48 5.6E-53 400.8 32.6 270 28-320 404-678 (686)
80 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-48 2.3E-53 350.3 25.8 214 78-309 1-219 (220)
81 cd03257 ABC_NikE_OppD_transpor 100.0 1.1E-48 2.4E-53 351.5 25.9 220 77-306 1-228 (228)
82 cd03256 ABC_PhnC_transporter A 100.0 7.6E-49 1.6E-53 355.6 25.0 227 78-310 1-231 (241)
83 PRK13650 cbiO cobalt transport 100.0 1.4E-48 3.1E-53 361.9 27.4 220 76-309 3-225 (279)
84 PRK11264 putative amino-acid A 100.0 1.7E-48 3.7E-53 355.4 27.5 220 77-309 3-229 (250)
85 PRK10895 lipopolysaccharide AB 100.0 1.2E-48 2.6E-53 354.7 26.2 220 77-309 3-222 (241)
86 PRK15093 antimicrobial peptide 100.0 1.7E-48 3.7E-53 369.3 28.3 231 76-309 2-244 (330)
87 PRK10908 cell division protein 100.0 1.6E-48 3.5E-53 349.7 26.6 215 77-304 1-217 (222)
88 cd03268 ABC_BcrA_bacitracin_re 100.0 6.7E-49 1.5E-53 348.6 23.4 208 78-306 1-208 (208)
89 cd03292 ABC_FtsE_transporter F 100.0 1.5E-48 3.3E-53 347.5 25.7 212 78-302 1-214 (214)
90 TIGR02211 LolD_lipo_ex lipopro 100.0 1.9E-48 4.1E-53 348.7 26.0 214 77-303 1-220 (221)
91 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2E-48 4.3E-53 353.5 26.4 219 78-309 1-221 (242)
92 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.1E-48 6.6E-53 401.6 31.2 274 27-320 421-705 (710)
93 PRK10584 putative ABC transpor 100.0 3.5E-48 7.6E-53 348.7 27.2 218 75-305 4-227 (228)
94 cd03269 ABC_putative_ATPase Th 100.0 1.6E-48 3.4E-53 346.7 24.5 210 78-306 1-210 (210)
95 PRK10619 histidine/lysine/argi 100.0 4.9E-48 1.1E-52 354.0 28.5 223 75-309 3-237 (257)
96 TIGR03522 GldA_ABC_ATP gliding 100.0 3.5E-48 7.6E-53 362.9 28.1 217 77-310 2-218 (301)
97 cd03264 ABC_drug_resistance_li 100.0 1.9E-48 4.1E-53 346.4 24.9 211 78-306 1-211 (211)
98 TIGR03410 urea_trans_UrtE urea 100.0 1.3E-48 2.9E-53 351.8 24.1 217 78-310 1-218 (230)
99 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4E-48 8.7E-53 350.3 27.1 216 77-309 1-217 (236)
100 TIGR02769 nickel_nikE nickel i 100.0 3.7E-48 8E-53 356.5 27.2 224 77-310 2-237 (265)
101 PRK13646 cbiO cobalt transport 100.0 3.2E-48 7E-53 360.7 27.1 221 77-309 2-231 (286)
102 TIGR03375 type_I_sec_LssB type 100.0 7.4E-48 1.6E-52 397.8 32.6 268 27-310 413-685 (694)
103 TIGR01186 proV glycine betaine 100.0 1.8E-48 4E-53 371.8 25.7 211 86-310 2-216 (363)
104 cd03225 ABC_cobalt_CbiO_domain 100.0 2.1E-48 4.7E-53 346.0 24.4 210 79-301 1-211 (211)
105 PRK13635 cbiO cobalt transport 100.0 5.3E-48 1.2E-52 358.0 27.6 221 75-309 3-225 (279)
106 PRK13644 cbiO cobalt transport 100.0 5.2E-48 1.1E-52 357.2 27.1 219 77-309 1-220 (274)
107 COG1132 MdlB ABC-type multidru 100.0 7.4E-48 1.6E-52 389.5 30.5 272 28-320 281-557 (567)
108 cd03226 ABC_cobalt_CbiO_domain 100.0 1.6E-48 3.5E-53 345.5 22.6 204 79-303 1-205 (205)
109 COG1123 ATPase components of v 100.0 1.4E-48 3.1E-53 381.2 24.3 225 74-309 277-515 (539)
110 TIGR01193 bacteriocin_ABC ABC- 100.0 2.1E-48 4.6E-53 402.7 26.9 274 28-320 424-702 (708)
111 PRK10070 glycine betaine trans 100.0 5.9E-48 1.3E-52 372.3 28.1 222 76-309 3-250 (400)
112 TIGR01188 drrA daunorubicin re 100.0 2.9E-48 6.3E-53 363.6 25.2 210 85-310 1-210 (302)
113 PRK11124 artP arginine transpo 100.0 6.2E-48 1.3E-52 350.2 26.6 221 77-310 2-227 (242)
114 PRK10575 iron-hydroxamate tran 100.0 4.8E-48 1E-52 355.7 26.1 225 74-309 8-233 (265)
115 PRK15112 antimicrobial peptide 100.0 7.7E-48 1.7E-52 354.7 27.0 224 75-309 2-235 (267)
116 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-47 2.6E-52 349.4 27.9 219 77-309 1-228 (247)
117 COG4987 CydC ABC-type transpor 100.0 1.4E-48 3.1E-53 375.3 22.7 266 31-320 291-566 (573)
118 COG4175 ProV ABC-type proline/ 100.0 9.4E-49 2E-53 355.3 19.9 223 76-310 3-251 (386)
119 PRK13548 hmuV hemin importer A 100.0 1.2E-47 2.5E-52 351.9 27.5 218 77-309 2-226 (258)
120 PRK14247 phosphate ABC transpo 100.0 1.5E-47 3.2E-52 349.3 28.1 223 76-309 2-230 (250)
121 PRK11231 fecE iron-dicitrate t 100.0 8.2E-48 1.8E-52 352.2 26.2 222 77-309 2-223 (255)
122 PRK09700 D-allose transporter 100.0 4.7E-48 1E-52 386.3 26.8 228 75-309 3-230 (510)
123 PRK13638 cbiO cobalt transport 100.0 9.1E-48 2E-52 355.0 26.5 218 77-309 1-221 (271)
124 cd03262 ABC_HisP_GlnQ_permease 100.0 7.5E-48 1.6E-52 342.8 25.0 212 78-302 1-213 (213)
125 PRK13652 cbiO cobalt transport 100.0 1.5E-47 3.3E-52 354.6 28.0 221 76-310 2-224 (277)
126 PRK14250 phosphate ABC transpo 100.0 6.4E-48 1.4E-52 350.1 24.9 214 77-309 3-217 (241)
127 PRK13636 cbiO cobalt transport 100.0 1.3E-47 2.8E-52 356.1 27.5 220 76-309 4-227 (283)
128 PRK11248 tauB taurine transpor 100.0 1.6E-47 3.4E-52 350.5 27.5 212 77-308 1-215 (255)
129 PRK11160 cysteine/glutathione 100.0 2.5E-47 5.3E-52 386.0 31.5 268 30-320 292-567 (574)
130 PRK11247 ssuB aliphatic sulfon 100.0 1E-47 2.2E-52 352.0 25.9 208 75-308 10-218 (257)
131 PRK11176 lipid transporter ATP 100.0 2.1E-47 4.6E-52 387.2 30.9 273 28-319 294-571 (582)
132 PRK13632 cbiO cobalt transport 100.0 1.4E-47 2.9E-52 353.9 26.9 222 74-309 4-227 (271)
133 PRK13649 cbiO cobalt transport 100.0 1.5E-47 3.4E-52 355.0 27.3 219 78-309 3-230 (280)
134 PRK11701 phnK phosphonate C-P 100.0 1.9E-47 4.2E-52 350.3 27.6 224 75-310 4-238 (258)
135 PRK10253 iron-enterobactin tra 100.0 1.2E-47 2.5E-52 353.2 26.1 226 74-310 4-230 (265)
136 TIGR03005 ectoine_ehuA ectoine 100.0 2.2E-47 4.8E-52 348.6 27.1 219 78-309 1-232 (252)
137 PRK14242 phosphate transporter 100.0 3.2E-47 6.9E-52 347.7 28.1 223 74-309 3-233 (253)
138 PRK14268 phosphate ABC transpo 100.0 3.5E-47 7.6E-52 348.6 28.4 223 74-309 9-238 (258)
139 TIGR03873 F420-0_ABC_ATP propo 100.0 2.2E-47 4.7E-52 349.6 26.6 221 78-309 2-222 (256)
140 cd03294 ABC_Pro_Gly_Bertaine T 100.0 8.2E-48 1.8E-52 355.0 23.9 217 79-309 26-246 (269)
141 PRK14267 phosphate ABC transpo 100.0 4.1E-47 8.8E-52 347.0 27.8 223 75-310 2-234 (253)
142 PRK13648 cbiO cobalt transport 100.0 4.1E-47 9E-52 350.2 27.8 221 75-309 5-227 (269)
143 PRK13639 cbiO cobalt transport 100.0 4.1E-47 9E-52 351.3 27.7 221 77-310 1-223 (275)
144 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.7E-47 3.6E-52 340.4 24.1 210 78-306 1-211 (211)
145 PRK10762 D-ribose transporter 100.0 1.8E-47 3.9E-52 381.4 27.1 224 76-309 3-226 (501)
146 TIGR03415 ABC_choXWV_ATP choli 100.0 2.9E-47 6.3E-52 365.3 27.4 207 92-310 37-251 (382)
147 PRK15439 autoinducer 2 ABC tra 100.0 2.2E-47 4.7E-52 381.4 27.6 218 74-309 8-225 (510)
148 cd03235 ABC_Metallic_Cations A 100.0 7.8E-48 1.7E-52 343.0 21.8 211 79-306 1-213 (213)
149 PRK10790 putative multidrug tr 100.0 2.8E-47 6.2E-52 387.0 28.8 269 28-319 294-567 (592)
150 PRK13633 cobalt transporter AT 100.0 3.4E-47 7.3E-52 352.8 26.7 223 75-310 2-230 (280)
151 PRK13640 cbiO cobalt transport 100.0 3.5E-47 7.5E-52 353.1 26.7 221 75-309 3-228 (282)
152 PRK13549 xylose transporter AT 100.0 2.3E-47 5.1E-52 380.9 27.1 224 75-309 3-228 (506)
153 PRK14273 phosphate ABC transpo 100.0 6.8E-47 1.5E-51 345.8 27.7 222 74-309 4-234 (254)
154 PRK09984 phosphonate/organopho 100.0 3E-47 6.5E-52 349.7 25.4 229 75-310 2-239 (262)
155 TIGR00958 3a01208 Conjugate Tr 100.0 9.1E-47 2E-51 390.2 31.6 272 28-320 430-707 (711)
156 PRK13645 cbiO cobalt transport 100.0 6.9E-47 1.5E-51 352.2 27.3 223 76-309 5-236 (289)
157 PRK13642 cbiO cobalt transport 100.0 8.5E-47 1.9E-51 349.6 27.6 220 76-309 3-225 (277)
158 PRK10744 pstB phosphate transp 100.0 1E-46 2.2E-51 345.9 27.8 223 74-309 10-240 (260)
159 TIGR02323 CP_lyasePhnK phospho 100.0 7.5E-47 1.6E-51 345.3 26.7 222 76-309 2-234 (253)
160 COG4181 Predicted ABC-type tra 100.0 6.1E-48 1.3E-52 322.8 17.6 217 76-305 5-227 (228)
161 TIGR01846 type_I_sec_HlyB type 100.0 1.6E-46 3.5E-51 387.8 31.9 275 27-320 406-685 (694)
162 PRK14248 phosphate ABC transpo 100.0 1.4E-46 3E-51 346.5 27.8 224 74-309 18-248 (268)
163 COG1129 MglA ABC-type sugar tr 100.0 3.5E-47 7.7E-52 369.1 24.9 224 74-307 5-228 (500)
164 TIGR01277 thiQ thiamine ABC tr 100.0 7.6E-47 1.6E-51 336.8 25.1 211 78-307 1-212 (213)
165 COG1123 ATPase components of v 100.0 4.5E-47 9.8E-52 370.7 25.5 228 75-310 3-241 (539)
166 PRK14235 phosphate transporter 100.0 1.8E-46 3.9E-51 345.6 28.1 225 73-309 15-247 (267)
167 PRK14269 phosphate ABC transpo 100.0 1.7E-46 3.6E-51 341.8 27.6 221 77-309 2-226 (246)
168 PRK10771 thiQ thiamine transpo 100.0 7.9E-47 1.7E-51 341.0 25.1 214 77-309 1-215 (232)
169 COG4598 HisP ABC-type histidin 100.0 3.3E-48 7.2E-53 326.8 14.8 223 75-310 4-238 (256)
170 PRK14245 phosphate ABC transpo 100.0 2.2E-46 4.7E-51 341.7 28.0 223 76-310 2-231 (250)
171 PRK14239 phosphate transporter 100.0 2.4E-46 5.1E-51 341.7 28.2 224 75-310 3-233 (252)
172 PRK14271 phosphate ABC transpo 100.0 3.2E-46 6.9E-51 345.6 29.0 223 73-309 17-247 (276)
173 TIGR01842 type_I_sec_PrtD type 100.0 3E-46 6.5E-51 376.0 31.3 264 28-309 270-538 (544)
174 PRK10419 nikE nickel transport 100.0 1.9E-46 4.2E-51 345.6 27.4 225 76-310 2-238 (268)
175 PRK13657 cyclic beta-1,2-gluca 100.0 4.8E-46 1E-50 377.7 32.7 271 29-318 286-561 (588)
176 PRK14256 phosphate ABC transpo 100.0 2.5E-46 5.4E-51 341.7 27.4 223 76-309 3-232 (252)
177 PRK11144 modC molybdate transp 100.0 9.6E-47 2.1E-51 360.1 25.7 211 77-310 1-215 (352)
178 PRK10261 glutathione transport 100.0 1.7E-46 3.6E-51 382.8 28.8 226 75-310 311-550 (623)
179 PRK14241 phosphate transporter 100.0 3.4E-46 7.3E-51 342.1 27.7 223 76-310 3-239 (258)
180 PRK10247 putative ABC transpor 100.0 1E-46 2.2E-51 338.9 23.7 218 74-309 4-223 (225)
181 PRK13547 hmuV hemin importer A 100.0 1.7E-46 3.6E-51 346.6 25.8 222 77-309 1-240 (272)
182 TIGR03740 galliderm_ABC gallid 100.0 1.5E-46 3.3E-51 337.0 24.8 209 78-309 1-209 (223)
183 PRK14274 phosphate ABC transpo 100.0 3.3E-46 7.3E-51 342.3 27.6 224 74-310 9-240 (259)
184 cd03300 ABC_PotA_N PotA is an 100.0 2.5E-46 5.5E-51 337.7 25.9 215 78-309 1-216 (232)
185 TIGR02203 MsbA_lipidA lipid A 100.0 4.5E-46 9.8E-51 376.5 30.5 272 28-318 283-559 (571)
186 PRK14270 phosphate ABC transpo 100.0 4.2E-46 9.1E-51 340.0 27.4 224 75-310 2-232 (251)
187 PRK11288 araG L-arabinose tran 100.0 2.4E-46 5.3E-51 373.2 28.0 222 76-308 3-224 (501)
188 COG4559 ABC-type hemin transpo 100.0 6.1E-47 1.3E-51 326.7 20.0 221 77-310 1-227 (259)
189 PRK10789 putative multidrug tr 100.0 8.2E-46 1.8E-50 374.6 31.7 272 28-319 266-542 (569)
190 PRK14259 phosphate ABC transpo 100.0 4.5E-46 9.7E-51 343.4 27.3 220 74-310 10-250 (269)
191 cd03252 ABCC_Hemolysin The ABC 100.0 1.1E-46 2.5E-51 340.7 22.9 214 78-309 1-221 (237)
192 PRK14262 phosphate ABC transpo 100.0 6.3E-46 1.4E-50 338.6 27.8 221 76-310 2-231 (250)
193 cd03297 ABC_ModC_molybdenum_tr 100.0 2.4E-46 5.1E-51 333.8 24.4 209 78-306 2-214 (214)
194 TIGR01192 chvA glucan exporter 100.0 1.1E-45 2.4E-50 374.7 32.4 274 28-320 285-563 (585)
195 cd03234 ABCG_White The White s 100.0 3.5E-46 7.6E-51 335.4 25.6 217 77-306 3-226 (226)
196 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.3E-46 5E-51 330.8 23.8 190 78-310 1-191 (200)
197 PRK14254 phosphate ABC transpo 100.0 7.2E-46 1.6E-50 344.7 28.3 221 74-309 36-265 (285)
198 PRK14251 phosphate ABC transpo 100.0 7.4E-46 1.6E-50 338.3 27.8 220 76-309 3-231 (251)
199 TIGR02142 modC_ABC molybdenum 100.0 2.2E-46 4.8E-51 358.0 25.5 211 82-310 4-218 (354)
200 KOG0057 Mitochondrial Fe/S clu 100.0 2.6E-46 5.6E-51 360.0 25.9 271 30-320 303-579 (591)
201 cd03245 ABCC_bacteriocin_expor 100.0 2E-46 4.2E-51 335.4 23.1 208 78-306 3-220 (220)
202 PRK14237 phosphate transporter 100.0 1E-45 2.2E-50 340.6 28.4 225 74-310 17-248 (267)
203 TIGR00968 3a0106s01 sulfate AB 100.0 5.8E-46 1.3E-50 336.5 26.3 215 78-309 1-216 (237)
204 cd03299 ABC_ModC_like Archeal 100.0 6.9E-46 1.5E-50 335.6 26.7 214 78-309 1-215 (235)
205 TIGR02633 xylG D-xylose ABC tr 100.0 4.2E-46 9.1E-51 371.4 27.7 224 77-309 1-226 (500)
206 TIGR02982 heterocyst_DevA ABC 100.0 5.4E-46 1.2E-50 332.9 25.5 214 77-302 1-219 (220)
207 PRK14253 phosphate ABC transpo 100.0 8.1E-46 1.8E-50 337.7 26.9 219 76-309 2-229 (249)
208 PRK14275 phosphate ABC transpo 100.0 1.2E-45 2.5E-50 343.5 28.4 224 74-309 36-266 (286)
209 PRK14240 phosphate transporter 100.0 1.2E-45 2.6E-50 336.7 27.8 220 77-309 3-230 (250)
210 KOG0055 Multidrug/pheromone ex 100.0 2.7E-46 5.8E-51 388.8 26.5 262 41-320 313-581 (1228)
211 PRK14272 phosphate ABC transpo 100.0 1.1E-45 2.4E-50 337.2 27.4 220 77-310 4-233 (252)
212 PRK14249 phosphate ABC transpo 100.0 1.4E-45 3E-50 336.6 27.9 222 75-310 2-232 (251)
213 PRK13549 xylose transporter AT 100.0 3.4E-46 7.4E-51 372.5 25.6 230 75-310 257-491 (506)
214 PRK14255 phosphate ABC transpo 100.0 2.2E-45 4.8E-50 335.4 28.2 223 75-309 3-232 (252)
215 PRK14238 phosphate transporter 100.0 1.6E-45 3.5E-50 340.0 27.6 221 74-309 21-251 (271)
216 cd03267 ABC_NatA_like Similar 100.0 6.1E-46 1.3E-50 336.2 24.1 201 92-306 34-236 (236)
217 cd03251 ABCC_MsbA MsbA is an e 100.0 1.2E-45 2.6E-50 333.4 25.8 214 78-309 1-221 (234)
218 PRK15134 microcin C ABC transp 100.0 7.8E-46 1.7E-50 371.8 27.3 225 75-309 3-242 (529)
219 TIGR03608 L_ocin_972_ABC putat 100.0 6.1E-46 1.3E-50 328.9 23.2 203 80-297 1-206 (206)
220 PRK14261 phosphate ABC transpo 100.0 2.2E-45 4.8E-50 335.7 27.5 224 75-310 4-234 (253)
221 TIGR02204 MsbA_rel ABC transpo 100.0 2.7E-45 5.9E-50 371.3 31.0 273 28-318 287-566 (576)
222 PRK14244 phosphate ABC transpo 100.0 1.5E-45 3.3E-50 336.3 26.3 221 78-309 6-233 (251)
223 PRK14236 phosphate transporter 100.0 2.8E-45 6.1E-50 338.6 28.3 224 74-309 22-252 (272)
224 PRK10261 glutathione transport 100.0 6.1E-46 1.3E-50 378.7 26.1 226 74-309 9-254 (623)
225 PRK10982 galactose/methyl gala 100.0 6.6E-46 1.4E-50 369.2 25.7 220 80-310 1-220 (491)
226 PRK14265 phosphate ABC transpo 100.0 2.8E-45 6.2E-50 338.9 27.7 224 73-310 16-255 (274)
227 PRK13538 cytochrome c biogenes 100.0 1.3E-45 2.9E-50 326.8 23.4 202 77-297 1-202 (204)
228 TIGR01184 ntrCD nitrate transp 100.0 1.3E-45 2.8E-50 332.8 23.6 198 95-308 1-199 (230)
229 PRK15134 microcin C ABC transp 100.0 1.1E-45 2.5E-50 370.6 25.7 226 74-309 272-511 (529)
230 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.2E-46 2E-50 335.0 22.6 214 78-309 1-222 (238)
231 COG3845 ABC-type uncharacteriz 100.0 8.4E-46 1.8E-50 353.6 23.2 222 75-307 2-223 (501)
232 PRK10418 nikD nickel transport 100.0 2.4E-45 5.3E-50 335.7 25.4 214 77-309 4-226 (254)
233 PRK14260 phosphate ABC transpo 100.0 4.4E-45 9.6E-50 334.9 27.0 224 75-310 5-240 (259)
234 COG4525 TauB ABC-type taurine 100.0 9.1E-46 2E-50 315.7 20.7 229 76-322 2-234 (259)
235 PRK15056 manganese/iron transp 100.0 2.4E-45 5.2E-50 339.1 25.3 220 77-310 6-227 (272)
236 cd03230 ABC_DR_subfamily_A Thi 100.0 1.4E-45 3E-50 318.6 22.0 173 78-302 1-173 (173)
237 PRK14257 phosphate ABC transpo 100.0 6.5E-45 1.4E-49 344.2 28.4 226 74-310 77-310 (329)
238 cd03246 ABCC_Protease_Secretio 100.0 1.5E-45 3.1E-50 318.5 21.9 173 78-302 1-173 (173)
239 PRK14243 phosphate transporter 100.0 3.7E-45 8.1E-50 336.4 26.0 221 75-310 8-245 (264)
240 cd03215 ABC_Carb_Monos_II This 100.0 1.7E-45 3.7E-50 320.6 22.4 178 75-302 2-182 (182)
241 PRK14246 phosphate ABC transpo 100.0 6.3E-45 1.4E-49 333.6 27.2 222 74-309 7-237 (257)
242 PRK13543 cytochrome c biogenes 100.0 3E-45 6.5E-50 326.9 24.2 205 74-299 8-212 (214)
243 PTZ00265 multidrug resistance 100.0 4.2E-45 9.2E-50 399.1 30.4 273 31-320 1115-1458(1466)
244 cd03254 ABCC_Glucan_exporter_l 100.0 5.1E-45 1.1E-49 328.2 25.6 214 77-309 2-222 (229)
245 PRK14258 phosphate ABC transpo 100.0 7.5E-45 1.6E-49 333.8 27.1 222 75-310 5-242 (261)
246 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-45 5.5E-50 365.8 25.6 229 75-309 255-488 (500)
247 cd03244 ABCC_MRP_domain2 Domai 100.0 2.7E-45 5.9E-50 328.3 23.2 209 77-307 2-220 (221)
248 TIGR02324 CP_lyasePhnL phospho 100.0 4.1E-45 8.8E-50 327.9 24.4 210 77-297 1-222 (224)
249 PRK09700 D-allose transporter 100.0 1.9E-45 4.2E-50 367.5 24.7 226 75-308 263-493 (510)
250 COG4608 AppF ABC-type oligopep 100.0 6.5E-46 1.4E-50 333.7 18.9 186 75-309 2-195 (268)
251 COG4172 ABC-type uncharacteriz 100.0 2.9E-45 6.2E-50 341.5 23.6 226 74-309 273-512 (534)
252 COG4152 ABC-type uncharacteriz 100.0 5.7E-46 1.2E-50 326.7 17.7 215 77-310 2-216 (300)
253 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.3E-45 1.4E-49 323.0 24.6 203 76-308 5-207 (207)
254 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.6E-45 7.9E-50 337.8 23.8 211 77-310 2-222 (275)
255 cd03232 ABC_PDR_domain2 The pl 100.0 5.3E-45 1.1E-49 320.2 23.6 186 77-306 3-192 (192)
256 cd03253 ABCC_ATM1_transporter 100.0 1E-44 2.2E-49 327.7 26.1 213 78-309 1-220 (236)
257 COG4604 CeuD ABC-type enteroch 100.0 6.6E-47 1.4E-51 323.1 11.0 221 77-310 1-222 (252)
258 PLN03130 ABC transporter C fam 100.0 3.9E-45 8.5E-50 402.6 28.2 268 30-316 1187-1462(1622)
259 cd03213 ABCG_EPDR ABCG transpo 100.0 6.3E-45 1.4E-49 320.2 23.6 185 77-306 3-194 (194)
260 cd03229 ABC_Class3 This class 100.0 3.2E-45 6.9E-50 317.7 21.4 175 78-301 1-178 (178)
261 cd03247 ABCC_cytochrome_bd The 100.0 4.6E-45 1E-49 316.7 22.2 178 78-306 1-178 (178)
262 PRK14266 phosphate ABC transpo 100.0 2E-44 4.3E-49 328.7 27.5 221 77-310 3-231 (250)
263 PRK14252 phosphate ABC transpo 100.0 2.3E-44 5E-49 331.2 28.0 225 73-310 12-246 (265)
264 TIGR03269 met_CoM_red_A2 methy 100.0 6E-45 1.3E-49 364.7 26.1 223 75-309 277-513 (520)
265 PLN03232 ABC transporter C fam 100.0 1.5E-44 3.3E-49 397.1 31.6 265 34-317 1188-1460(1495)
266 cd03214 ABC_Iron-Siderophores_ 100.0 2.7E-45 5.8E-50 318.8 20.3 179 79-306 1-180 (180)
267 cd03248 ABCC_TAP TAP, the Tran 100.0 3.1E-45 6.7E-50 329.1 21.0 216 74-302 8-226 (226)
268 PRK03695 vitamin B12-transport 100.0 7.8E-45 1.7E-49 331.3 24.0 210 79-309 2-218 (248)
269 cd03216 ABC_Carb_Monos_I This 100.0 9.3E-45 2E-49 310.6 22.8 162 78-304 1-162 (163)
270 PRK10938 putative molybdenum t 100.0 3.9E-45 8.4E-50 363.6 23.4 210 77-309 3-220 (490)
271 KOG0055 Multidrug/pheromone ex 100.0 4.2E-45 9.2E-50 379.9 24.3 264 40-321 949-1219(1228)
272 cd03233 ABC_PDR_domain1 The pl 100.0 9.9E-45 2.2E-49 320.9 23.2 193 77-306 3-202 (202)
273 TIGR02770 nickel_nikD nickel i 100.0 8.2E-45 1.8E-49 327.5 23.0 203 94-310 1-212 (230)
274 PRK14264 phosphate ABC transpo 100.0 3.9E-44 8.5E-49 336.1 28.1 229 74-309 42-285 (305)
275 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.5E-44 3.1E-49 324.8 24.1 202 78-306 23-224 (224)
276 TIGR02868 CydC thiol reductant 100.0 1.6E-44 3.4E-49 362.4 27.1 240 28-283 283-529 (529)
277 TIGR00957 MRP_assoc_pro multi 100.0 3.9E-44 8.5E-49 394.4 32.2 268 29-319 1233-1512(1522)
278 PRK09544 znuC high-affinity zi 100.0 1E-44 2.2E-49 331.1 23.0 200 76-309 3-205 (251)
279 TIGR03269 met_CoM_red_A2 methy 100.0 1.1E-44 2.3E-49 362.9 25.4 220 78-309 1-254 (520)
280 PRK14263 phosphate ABC transpo 100.0 4E-44 8.6E-49 329.0 27.0 221 74-310 5-242 (261)
281 TIGR02857 CydD thiol reductant 100.0 3.5E-44 7.7E-49 359.8 29.0 251 29-297 274-529 (529)
282 COG4161 ArtP ABC-type arginine 100.0 3.3E-45 7.2E-50 303.9 17.7 221 77-310 2-227 (242)
283 cd03231 ABC_CcmA_heme_exporter 100.0 1.6E-44 3.4E-49 319.3 22.6 198 78-297 1-198 (201)
284 cd03288 ABCC_SUR2 The SUR doma 100.0 3.3E-44 7.2E-49 328.8 23.8 217 74-309 16-239 (257)
285 PRK10762 D-ribose transporter 100.0 3.4E-44 7.3E-49 357.8 25.7 222 75-309 255-480 (501)
286 PRK10522 multidrug transporter 100.0 1E-43 2.2E-48 357.8 28.9 254 30-309 277-534 (547)
287 TIGR01257 rim_protein retinal- 100.0 8E-44 1.7E-48 391.5 29.4 230 75-318 1935-2164(2272)
288 PRK11288 araG L-arabinose tran 100.0 3.9E-44 8.4E-49 357.4 24.5 224 75-309 255-481 (501)
289 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.3E-43 2.9E-48 357.5 28.6 255 28-305 280-551 (555)
290 PRK13539 cytochrome c biogenes 100.0 4.7E-44 1E-48 317.6 21.9 198 77-298 2-199 (207)
291 TIGR01189 ccmA heme ABC export 100.0 5.3E-44 1.1E-48 315.0 22.0 197 78-296 1-197 (198)
292 PRK13540 cytochrome c biogenes 100.0 4.6E-44 1E-48 316.0 21.4 192 77-288 1-192 (200)
293 COG4618 ArpD ABC-type protease 100.0 8.8E-44 1.9E-48 339.8 24.5 263 30-310 290-557 (580)
294 cd03228 ABCC_MRP_Like The MRP 100.0 7.7E-44 1.7E-48 307.1 22.0 171 78-301 1-171 (171)
295 PRK15439 autoinducer 2 ABC tra 100.0 7.1E-44 1.5E-48 356.1 25.1 221 74-309 265-488 (510)
296 PRK10982 galactose/methyl gala 100.0 6.2E-44 1.4E-48 355.1 24.3 225 75-309 248-476 (491)
297 TIGR01257 rim_protein retinal- 100.0 2.2E-43 4.7E-48 388.1 30.3 230 75-319 926-1155(2272)
298 PTZ00243 ABC transporter; Prov 100.0 4.3E-43 9.2E-48 385.9 32.4 263 30-315 1231-1533(1560)
299 PRK13546 teichoic acids export 100.0 7.3E-43 1.6E-47 321.0 26.6 208 76-309 3-228 (264)
300 PRK10938 putative molybdenum t 100.0 1.6E-43 3.6E-48 352.0 22.1 226 74-307 257-486 (490)
301 TIGR01166 cbiO cobalt transpor 100.0 2.6E-43 5.6E-48 308.6 20.6 184 91-285 4-189 (190)
302 cd03250 ABCC_MRP_domain1 Domai 100.0 2.6E-43 5.7E-48 311.9 20.6 194 78-301 1-204 (204)
303 COG1119 ModF ABC-type molybden 100.0 2.1E-43 4.5E-48 311.8 19.4 226 71-307 25-256 (257)
304 COG4674 Uncharacterized ABC-ty 100.0 5.8E-44 1.3E-48 304.6 15.0 227 76-311 4-233 (249)
305 COG4172 ABC-type uncharacteriz 100.0 3.7E-43 8.1E-48 327.4 21.7 228 74-309 3-243 (534)
306 PRK13545 tagH teichoic acids e 100.0 1.5E-42 3.2E-47 340.1 27.0 210 74-309 18-228 (549)
307 cd03290 ABCC_SUR1_N The SUR do 100.0 1E-42 2.2E-47 311.2 22.0 202 79-301 2-218 (218)
308 KOG0056 Heavy metal exporter H 100.0 4.6E-43 1E-47 332.6 20.2 263 36-320 496-767 (790)
309 PTZ00265 multidrug resistance 100.0 1.2E-42 2.5E-47 380.0 26.5 252 38-300 344-655 (1466)
310 PLN03211 ABC transporter G-25; 100.0 1.6E-42 3.5E-47 354.3 25.0 225 80-320 71-304 (659)
311 PRK10535 macrolide transporter 100.0 6.2E-42 1.3E-46 350.6 28.9 222 76-310 3-229 (648)
312 PRK15064 ABC transporter ATP-b 100.0 2.6E-42 5.5E-47 346.5 25.5 212 77-309 1-238 (530)
313 TIGR01271 CFTR_protein cystic 100.0 3.7E-42 8.1E-47 377.9 27.7 255 34-310 1157-1437(1490)
314 PRK15064 ABC transporter ATP-b 100.0 3.3E-42 7.2E-47 345.6 24.3 209 75-318 317-528 (530)
315 PRK11819 putative ABC transpor 100.0 2.8E-42 6.1E-47 347.9 23.8 213 75-309 4-246 (556)
316 PRK13541 cytochrome c biogenes 100.0 5.1E-42 1.1E-46 301.8 21.4 192 77-294 1-192 (195)
317 TIGR03771 anch_rpt_ABC anchore 100.0 5.5E-42 1.2E-46 307.8 21.2 195 100-309 1-197 (223)
318 cd03223 ABCD_peroxisomal_ALDP 100.0 8.2E-42 1.8E-46 293.3 21.2 163 78-300 1-163 (166)
319 COG4619 ABC-type uncharacteriz 100.0 7.7E-43 1.7E-47 291.3 14.0 208 78-302 4-212 (223)
320 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.3E-41 7.1E-46 312.5 24.9 205 73-309 35-243 (282)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.1E-41 4.5E-46 341.3 24.0 212 76-309 3-244 (552)
322 TIGR01187 potA spermidine/putr 100.0 2.5E-41 5.4E-46 319.7 22.0 186 110-310 1-187 (325)
323 COG4167 SapF ABC-type antimicr 100.0 1.4E-41 3E-46 287.5 17.3 225 75-310 2-236 (267)
324 PRK10636 putative ABC transpor 100.0 5.5E-41 1.2E-45 342.8 24.4 203 74-310 309-514 (638)
325 COG4148 ModC ABC-type molybdat 100.0 4.3E-42 9.4E-47 307.3 14.2 197 96-310 15-215 (352)
326 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.9E-41 4.1E-46 310.0 18.7 205 81-306 4-220 (255)
327 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.7E-41 8E-46 306.7 20.4 188 85-302 1-194 (246)
328 PRK13409 putative ATPase RIL; 100.0 8.9E-41 1.9E-45 337.6 22.9 200 74-308 337-537 (590)
329 COG1101 PhnK ABC-type uncharac 100.0 4E-41 8.7E-46 291.3 17.3 225 77-307 1-232 (263)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.8E-40 3.8E-45 334.6 24.9 204 75-308 320-526 (552)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.5E-40 3.2E-45 279.0 20.2 144 78-301 1-144 (144)
332 PRK11819 putative ABC transpor 100.0 1.4E-40 3.1E-45 335.4 24.1 205 75-309 322-529 (556)
333 PRK10636 putative ABC transpor 100.0 1.3E-40 2.8E-45 340.1 23.9 209 77-309 1-232 (638)
334 PRK11147 ABC transporter ATPas 100.0 1.8E-40 3.9E-45 339.3 24.9 205 74-308 316-523 (635)
335 TIGR00956 3a01205 Pleiotropic 100.0 3E-40 6.5E-45 360.5 28.2 231 76-319 758-1004(1394)
336 COG5265 ATM1 ABC-type transpor 100.0 1.1E-40 2.3E-45 312.5 20.0 271 29-321 210-492 (497)
337 TIGR00955 3a01204 The Eye Pigm 100.0 3.7E-40 8.1E-45 335.9 24.6 218 91-320 37-264 (617)
338 TIGR00954 3a01203 Peroxysomal 100.0 9.1E-40 2E-44 335.0 25.5 242 29-298 380-652 (659)
339 PRK15177 Vi polysaccharide exp 100.0 6.6E-40 1.4E-44 292.4 20.6 189 93-311 1-190 (213)
340 PLN03073 ABC transporter F fam 100.0 1.2E-39 2.6E-44 335.2 24.5 204 75-309 506-710 (718)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 8.1E-40 1.7E-44 283.2 18.8 153 81-309 4-159 (177)
342 COG4586 ABC-type uncharacteriz 100.0 3.1E-40 6.8E-45 294.6 16.4 205 93-310 38-243 (325)
343 PRK11147 ABC transporter ATPas 100.0 1.7E-39 3.8E-44 332.1 24.2 206 77-309 3-239 (635)
344 COG4107 PhnK ABC-type phosphon 100.0 3E-40 6.6E-45 277.4 15.1 224 74-309 3-237 (258)
345 TIGR00957 MRP_assoc_pro multi 100.0 2.8E-39 6E-44 356.1 27.1 253 28-309 586-846 (1522)
346 PLN03130 ABC transporter C fam 100.0 3.1E-39 6.6E-44 356.1 26.9 251 28-310 567-825 (1622)
347 PLN03140 ABC transporter G fam 100.0 6.7E-39 1.5E-43 349.5 29.2 234 77-320 867-1123(1470)
348 PLN03232 ABC transporter C fam 100.0 3.4E-39 7.3E-44 355.0 26.3 251 28-309 567-824 (1495)
349 COG0488 Uup ATPase components 100.0 1.9E-39 4.1E-44 321.6 20.0 210 76-308 2-235 (530)
350 cd00267 ABC_ATPase ABC (ATP-bi 100.0 8.6E-39 1.9E-43 271.7 20.9 156 80-301 2-157 (157)
351 cd03238 ABC_UvrA The excision 100.0 1.1E-38 2.3E-43 276.0 18.6 158 91-302 7-166 (176)
352 TIGR00956 3a01205 Pleiotropic 100.0 1.9E-38 4.1E-43 346.4 22.9 225 92-320 74-308 (1394)
353 KOG0054 Multidrug resistance-a 100.0 5.6E-38 1.2E-42 333.2 24.6 259 39-316 1097-1363(1381)
354 TIGR01271 CFTR_protein cystic 100.0 1.9E-37 4.1E-42 340.8 28.3 248 30-310 349-633 (1490)
355 PRK13409 putative ATPase RIL; 100.0 1.1E-38 2.3E-43 322.5 17.0 195 82-300 78-287 (590)
356 PLN03073 ABC transporter F fam 100.0 1.6E-37 3.5E-42 319.5 21.8 226 74-309 174-427 (718)
357 KOG0061 Transporter, ABC super 100.0 4.3E-37 9.2E-42 311.7 23.0 235 76-320 24-268 (613)
358 COG1134 TagH ABC-type polysacc 100.0 7E-37 1.5E-41 270.6 21.2 195 92-311 40-234 (249)
359 COG4136 ABC-type uncharacteriz 100.0 2.6E-37 5.6E-42 253.9 14.8 204 77-297 2-207 (213)
360 PLN03140 ABC transporter G fam 100.0 7.2E-37 1.6E-41 333.6 20.2 221 92-321 178-436 (1470)
361 KOG0059 Lipid exporter ABCA1 a 100.0 1.1E-36 2.3E-41 320.6 19.8 231 76-319 563-793 (885)
362 PTZ00243 ABC transporter; Prov 100.0 1.1E-35 2.5E-40 327.3 26.2 192 92-310 673-867 (1560)
363 COG0488 Uup ATPase components 100.0 1.3E-35 2.8E-40 294.3 22.3 202 73-308 317-520 (530)
364 cd03270 ABC_UvrA_I The excisio 100.0 2.5E-35 5.5E-40 265.1 21.2 199 91-306 7-226 (226)
365 COG4133 CcmA ABC-type transpor 100.0 4.9E-36 1.1E-40 254.9 15.5 192 77-286 2-193 (209)
366 COG4778 PhnL ABC-type phosphon 100.0 7.8E-36 1.7E-40 249.8 14.0 211 77-298 4-226 (235)
367 KOG0054 Multidrug resistance-a 100.0 6.2E-35 1.3E-39 310.0 24.1 254 27-310 468-728 (1381)
368 cd03271 ABC_UvrA_II The excisi 100.0 1.1E-32 2.3E-37 252.1 20.3 201 92-308 8-261 (261)
369 COG1129 MglA ABC-type sugar tr 100.0 2.1E-32 4.6E-37 266.1 22.9 222 74-307 260-484 (500)
370 PF00005 ABC_tran: ABC transpo 100.0 6.2E-33 1.3E-37 229.7 13.9 134 95-252 1-137 (137)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 1.9E-32 4.1E-37 241.5 13.2 166 94-299 11-190 (197)
372 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.4E-31 3E-36 238.7 14.4 195 77-301 5-210 (213)
373 COG4615 PvdE ABC-type sideroph 100.0 5.2E-31 1.1E-35 245.6 16.3 242 40-308 287-532 (546)
374 KOG0927 Predicted transporter 100.0 2.8E-31 6.1E-36 255.5 10.6 203 74-308 386-591 (614)
375 COG4138 BtuD ABC-type cobalami 100.0 1.1E-31 2.5E-36 225.8 6.0 208 77-310 3-218 (248)
376 COG3845 ABC-type uncharacteriz 100.0 4.7E-29 1E-33 238.9 24.2 234 72-310 252-489 (501)
377 COG4170 SapD ABC-type antimicr 100.0 1.8E-30 3.9E-35 224.4 10.9 228 76-309 2-244 (330)
378 KOG0065 Pleiotropic drug resis 100.0 3.1E-30 6.8E-35 269.3 11.0 234 77-318 787-1031(1391)
379 cd03272 ABC_SMC3_euk Eukaryoti 100.0 3.5E-29 7.6E-34 227.1 15.6 200 78-298 4-234 (243)
380 KOG0927 Predicted transporter 100.0 1.5E-29 3.1E-34 243.8 13.3 220 75-309 73-305 (614)
381 cd03273 ABC_SMC2_euk Eukaryoti 100.0 8.9E-30 1.9E-34 232.5 10.2 183 105-298 25-242 (251)
382 COG4178 ABC-type uncharacteriz 100.0 4E-28 8.6E-33 240.5 21.8 193 75-298 390-588 (604)
383 PRK00635 excinuclease ABC subu 100.0 4.6E-28 1E-32 263.7 23.9 217 76-310 599-903 (1809)
384 cd03240 ABC_Rad50 The catalyti 100.0 1.3E-28 2.7E-33 218.3 10.9 165 98-299 16-197 (204)
385 PRK00349 uvrA excinuclease ABC 100.0 3.2E-27 6.9E-32 247.5 22.3 105 203-310 811-924 (943)
386 cd03274 ABC_SMC4_euk Eukaryoti 100.0 1.8E-29 3.9E-34 224.9 3.8 192 77-299 5-204 (212)
387 KOG0062 ATPase component of AB 100.0 1.8E-28 3.9E-33 235.0 10.3 200 75-308 78-280 (582)
388 KOG0066 eIF2-interacting prote 100.0 6.2E-28 1.4E-32 227.3 13.5 201 74-308 583-786 (807)
389 KOG0062 ATPase component of AB 99.9 4.3E-27 9.3E-32 225.6 16.1 202 73-304 358-559 (582)
390 TIGR00630 uvra excinuclease AB 99.9 1.1E-26 2.3E-31 243.1 20.2 104 203-309 809-921 (924)
391 COG1245 Predicted ATPase, RNas 99.9 3.7E-27 8E-32 223.3 15.0 189 76-298 341-530 (591)
392 cd03276 ABC_SMC6_euk Eukaryoti 99.9 4.4E-27 9.6E-32 207.5 12.1 173 94-301 11-192 (198)
393 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.3E-27 5E-32 216.2 9.5 198 78-299 4-233 (247)
394 KOG0060 Long-chain acyl-CoA tr 99.9 9.5E-25 2.1E-29 212.0 20.0 207 73-299 429-641 (659)
395 KOG2355 Predicted ABC-type tra 99.9 7.9E-25 1.7E-29 188.8 14.8 211 74-307 10-231 (291)
396 KOG0065 Pleiotropic drug resis 99.9 1.1E-23 2.3E-28 220.7 13.6 224 92-321 128-360 (1391)
397 cd03280 ABC_MutS2 MutS2 homolo 99.9 1E-23 2.2E-28 186.3 11.4 147 94-306 16-172 (200)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.9 8.5E-23 1.8E-27 182.1 15.6 86 216-302 120-212 (213)
399 COG2401 ABC-type ATPase fused 99.9 3.8E-23 8.3E-28 194.2 12.9 184 92-303 396-588 (593)
400 COG1245 Predicted ATPase, RNas 99.9 5.2E-23 1.1E-27 195.2 12.9 201 82-298 79-287 (591)
401 cd03239 ABC_SMC_head The struc 99.9 5.7E-22 1.2E-26 172.0 14.2 74 224-299 95-172 (178)
402 KOG0066 eIF2-interacting prote 99.9 1.1E-22 2.3E-27 192.1 8.8 220 76-309 263-495 (807)
403 cd03241 ABC_RecN RecN ATPase i 99.9 7.1E-22 1.5E-26 182.9 12.5 76 223-301 170-249 (276)
404 cd03227 ABC_Class2 ABC-type Cl 99.9 8E-22 1.7E-26 168.5 10.5 75 223-299 77-155 (162)
405 KOG0064 Peroxisomal long-chain 99.9 5.3E-21 1.2E-25 184.1 15.8 186 77-288 481-674 (728)
406 PRK00635 excinuclease ABC subu 99.9 2.7E-20 5.8E-25 203.5 20.9 107 202-311 1679-1794(1809)
407 cd03283 ABC_MutS-like MutS-lik 99.8 3.5E-21 7.6E-26 170.0 8.3 140 92-289 14-154 (199)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.8 1.2E-20 2.7E-25 169.2 10.3 153 92-307 17-175 (222)
409 COG0178 UvrA Excinuclease ATPa 99.8 3.7E-19 8E-24 178.9 19.8 106 204-312 804-918 (935)
410 cd03242 ABC_RecF RecF is a rec 99.8 9.8E-20 2.1E-24 168.1 13.9 76 223-302 183-269 (270)
411 cd03243 ABC_MutS_homologs The 99.8 4.2E-20 9.1E-25 163.4 10.2 83 223-308 91-174 (202)
412 cd03282 ABC_MSH4_euk MutS4 hom 99.8 8.3E-20 1.8E-24 161.7 10.6 141 92-289 16-157 (204)
413 PRK00349 uvrA excinuclease ABC 99.8 9.1E-20 2E-24 191.6 12.7 103 205-310 472-582 (943)
414 TIGR00630 uvra excinuclease AB 99.8 1.7E-19 3.8E-24 189.2 13.2 103 205-310 470-580 (924)
415 KOG0063 RNAse L inhibitor, ABC 99.7 1.6E-17 3.5E-22 156.9 12.9 182 85-298 343-531 (592)
416 cd03284 ABC_MutS1 MutS1 homolo 99.7 9.1E-17 2E-21 143.6 10.2 147 92-307 18-175 (216)
417 TIGR02858 spore_III_AA stage I 99.7 2.9E-16 6.3E-21 144.5 13.5 135 106-301 112-259 (270)
418 PRK00064 recF recombination pr 99.7 3.6E-15 7.8E-20 143.1 20.3 77 223-302 273-359 (361)
419 smart00534 MUTSac ATPase domai 99.7 3.7E-16 8.1E-21 136.3 9.1 62 223-287 61-126 (185)
420 cd03281 ABC_MSH5_euk MutS5 hom 99.6 1.1E-15 2.4E-20 136.3 11.8 64 226-289 93-160 (213)
421 TIGR01069 mutS2 MutS2 family p 99.6 4.6E-16 1E-20 161.6 9.7 152 77-287 295-449 (771)
422 PF02463 SMC_N: RecF/RecN/SMC 99.6 4.7E-16 1E-20 138.9 6.8 85 201-296 122-210 (220)
423 KOG0063 RNAse L inhibitor, ABC 99.6 3.3E-15 7.1E-20 141.5 8.5 188 103-298 98-287 (592)
424 PTZ00132 GTP-binding nuclear p 99.6 1.5E-14 3.2E-19 128.8 11.6 48 224-271 151-205 (215)
425 cd01128 rho_factor Transcripti 99.5 1.9E-14 4.1E-19 131.1 9.6 78 221-304 127-213 (249)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.5 4.1E-14 8.8E-19 126.8 10.6 138 92-288 18-159 (222)
427 TIGR00634 recN DNA repair prot 99.5 2.4E-14 5.3E-19 144.9 9.9 76 223-301 440-519 (563)
428 PRK00409 recombination and DNA 99.5 3.1E-14 6.8E-19 148.4 9.7 79 223-304 390-469 (782)
429 TIGR00618 sbcc exonuclease Sbc 99.5 5.5E-14 1.2E-18 151.7 10.6 83 216-300 944-1036(1042)
430 PRK07721 fliI flagellum-specif 99.5 4.5E-13 9.7E-18 131.0 14.5 176 91-308 145-338 (438)
431 PRK10869 recombination and rep 99.5 1.5E-13 3.3E-18 138.5 10.6 74 224-300 431-508 (553)
432 PHA02562 46 endonuclease subun 99.5 8.4E-14 1.8E-18 141.0 8.5 76 223-302 468-555 (562)
433 PRK08533 flagellar accessory p 99.4 6.5E-13 1.4E-17 119.9 11.5 60 224-284 96-163 (230)
434 cd03286 ABC_MSH6_euk MutS6 hom 99.4 5.6E-13 1.2E-17 119.2 10.4 139 92-289 17-159 (218)
435 cd00820 PEPCK_HprK Phosphoenol 99.4 2E-13 4.4E-18 107.9 6.1 76 92-179 2-77 (107)
436 PRK13695 putative NTPase; Prov 99.4 5.6E-13 1.2E-17 115.0 7.9 78 223-306 78-157 (174)
437 PRK10246 exonuclease subunit S 99.4 1E-12 2.2E-17 141.6 10.4 80 218-299 945-1032(1047)
438 PRK03918 chromosome segregatio 99.4 8.4E-13 1.8E-17 140.4 9.5 74 223-298 788-867 (880)
439 PF13304 AAA_21: AAA domain; P 99.4 1.5E-12 3.2E-17 115.9 9.1 64 223-286 236-302 (303)
440 PRK06793 fliI flagellum-specif 99.4 5.3E-12 1.1E-16 122.8 13.5 169 76-306 129-304 (432)
441 cd01124 KaiC KaiC is a circadi 99.4 3.9E-12 8.5E-17 110.2 11.3 81 216-298 65-163 (187)
442 COG3910 Predicted ATPase [Gene 99.4 1.1E-11 2.4E-16 106.2 13.4 78 224-303 130-207 (233)
443 TIGR00606 rad50 rad50. This fa 99.4 1.9E-12 4.2E-17 142.5 10.5 78 219-297 1196-1288(1311)
444 COG0178 UvrA Excinuclease ATPa 99.3 5.1E-12 1.1E-16 128.0 11.4 103 205-310 464-574 (935)
445 PRK01156 chromosome segregatio 99.3 7.1E-12 1.5E-16 133.6 12.4 74 223-298 801-883 (895)
446 PRK13830 conjugal transfer pro 99.3 4.6E-11 1E-15 125.8 15.9 69 239-308 650-728 (818)
447 TIGR02788 VirB11 P-type DNA tr 99.3 4.6E-12 1E-16 119.2 5.8 141 98-309 137-277 (308)
448 TIGR03238 dnd_assoc_3 dnd syst 99.3 3.8E-12 8.2E-17 123.9 4.9 67 93-165 20-87 (504)
449 TIGR02168 SMC_prok_B chromosom 99.2 1.3E-11 2.9E-16 134.2 8.2 76 218-297 1085-1164(1179)
450 cd01120 RecA-like_NTPases RecA 99.2 9.1E-11 2E-15 98.3 10.6 63 224-286 68-140 (165)
451 PRK02224 chromosome segregatio 99.1 9E-11 1.9E-15 125.0 8.9 76 223-300 781-869 (880)
452 TIGR02169 SMC_prok_A chromosom 99.1 1.2E-10 2.7E-15 126.9 9.2 73 223-298 1074-1150(1164)
453 PRK06067 flagellar accessory p 99.0 1.1E-09 2.5E-14 98.8 9.6 74 224-298 101-186 (234)
454 TIGR00611 recf recF protein. A 99.0 8.9E-10 1.9E-14 106.0 7.4 62 223-287 275-345 (365)
455 cd01125 repA Hexameric Replica 99.0 2.6E-09 5.6E-14 96.8 9.2 47 237-284 107-160 (239)
456 TIGR01026 fliI_yscN ATPase Fli 98.9 1.8E-08 3.9E-13 98.8 15.0 177 91-307 150-342 (440)
457 smart00382 AAA ATPases associa 98.9 5.7E-08 1.2E-12 78.2 15.0 59 224-282 61-125 (148)
458 PRK13891 conjugal transfer pro 98.9 5.9E-08 1.3E-12 102.9 19.1 55 234-288 680-735 (852)
459 PRK06002 fliI flagellum-specif 98.9 4.2E-09 9E-14 102.8 8.2 88 74-165 136-229 (450)
460 cd01131 PilT Pilus retraction 98.9 5.1E-09 1.1E-13 92.3 8.0 56 233-297 66-121 (198)
461 COG0419 SbcC ATPase involved i 98.9 6.5E-09 1.4E-13 111.1 10.0 75 222-298 814-896 (908)
462 TIGR02655 circ_KaiC circadian 98.8 3E-10 6.5E-15 113.2 -1.8 159 101-298 17-190 (484)
463 PRK05399 DNA mismatch repair p 98.8 2.9E-08 6.3E-13 105.0 12.5 63 223-287 666-734 (854)
464 PRK14079 recF recombination pr 98.8 1.3E-08 2.9E-13 97.3 8.3 77 223-307 263-348 (349)
465 TIGR02680 conserved hypothetic 98.8 1.4E-08 3E-13 112.2 7.9 63 217-283 1242-1316(1353)
466 cd01130 VirB11-like_ATPase Typ 98.7 1.9E-08 4.1E-13 87.8 6.9 49 94-144 14-62 (186)
467 PRK13898 type IV secretion sys 98.7 9E-07 1.9E-11 93.6 19.4 50 238-287 639-689 (800)
468 PRK06995 flhF flagellar biosyn 98.7 7E-08 1.5E-12 95.4 9.9 35 94-128 245-279 (484)
469 TIGR03881 KaiC_arch_4 KaiC dom 98.7 1.5E-08 3.3E-13 91.0 4.6 39 101-142 16-56 (229)
470 PLN03210 Resistant to P. syrin 98.7 8.8E-08 1.9E-12 104.9 11.2 45 98-143 200-244 (1153)
471 cd02023 UMPK Uridine monophosp 98.7 1.6E-08 3.4E-13 88.9 4.1 111 107-256 1-113 (198)
472 PRK07196 fliI flagellum-specif 98.6 3.8E-08 8.2E-13 96.0 6.3 84 91-177 142-233 (434)
473 TIGR00767 rho transcription te 98.6 1.5E-07 3.2E-12 90.6 8.7 79 44-128 102-191 (415)
474 PRK00454 engB GTP-binding prot 98.5 1.1E-06 2.3E-11 76.5 12.1 66 202-272 127-195 (196)
475 PRK09825 idnK D-gluconate kina 98.5 1E-07 2.2E-12 82.6 5.3 38 104-147 2-39 (176)
476 PRK13873 conjugal transfer ATP 98.5 1.3E-06 2.8E-11 92.5 14.4 49 239-287 633-682 (811)
477 PRK08149 ATP synthase SpaL; Va 98.5 1.7E-07 3.8E-12 91.3 6.2 72 91-165 138-215 (428)
478 TIGR01420 pilT_fam pilus retra 98.5 1.2E-06 2.6E-11 83.7 11.5 45 233-284 187-231 (343)
479 PRK06315 type III secretion sy 98.5 3.4E-07 7.3E-12 89.7 7.6 54 92-147 152-208 (442)
480 PRK07594 type III secretion sy 98.5 1.9E-07 4.1E-12 91.2 5.2 66 75-144 127-192 (433)
481 PF13555 AAA_29: P-loop contai 98.4 2.5E-07 5.3E-12 65.8 4.4 34 95-128 12-46 (62)
482 TIGR02903 spore_lon_C ATP-depe 98.4 7.9E-07 1.7E-11 91.2 9.7 110 104-268 174-291 (615)
483 COG1195 RecF Recombinational D 98.4 5.6E-06 1.2E-10 78.8 14.6 76 223-302 275-361 (363)
484 PF00488 MutS_V: MutS domain V 98.4 5.8E-06 1.3E-10 74.9 14.0 50 239-288 120-171 (235)
485 PF13558 SbcCD_C: Putative exo 98.4 7.2E-07 1.6E-11 68.6 6.3 50 218-268 28-90 (90)
486 TIGR00152 dephospho-CoA kinase 98.4 5.9E-07 1.3E-11 78.4 5.6 72 226-300 60-133 (188)
487 cd01136 ATPase_flagellum-secre 98.4 5.6E-07 1.2E-11 85.0 5.7 59 82-144 48-106 (326)
488 cd01876 YihA_EngB The YihA (En 98.4 4.7E-06 1E-10 69.5 10.8 63 202-269 102-169 (170)
489 PRK10078 ribose 1,5-bisphospho 98.4 7E-07 1.5E-11 77.8 5.9 54 105-164 2-55 (186)
490 PRK00300 gmk guanylate kinase; 98.3 4E-07 8.7E-12 80.2 4.2 26 103-128 3-28 (205)
491 PRK09862 putative ATP-dependen 98.3 4.6E-07 1E-11 90.3 4.9 63 80-146 187-249 (506)
492 TIGR02322 phosphon_PhnN phosph 98.3 2.1E-06 4.6E-11 74.0 7.8 33 105-140 1-33 (179)
493 PRK09099 type III secretion sy 98.3 9.8E-07 2.1E-11 86.5 5.7 52 91-145 150-201 (441)
494 TIGR00554 panK_bact pantothena 98.3 1.3E-06 2.7E-11 81.4 6.2 70 106-178 63-132 (290)
495 TIGR00235 udk uridine kinase. 98.3 5.1E-07 1.1E-11 80.0 2.7 26 103-128 4-29 (207)
496 cd00009 AAA The AAA+ (ATPases 98.2 6.5E-06 1.4E-10 66.8 8.9 55 229-284 72-131 (151)
497 TIGR02546 III_secr_ATP type II 98.2 1.2E-06 2.7E-11 85.7 4.7 59 83-145 125-183 (422)
498 TIGR03497 FliI_clade2 flagella 98.2 2.2E-06 4.9E-11 83.5 6.1 60 83-146 117-176 (413)
499 PLN02796 D-glycerate 3-kinase 98.2 5.1E-07 1.1E-11 85.5 1.5 54 92-147 79-143 (347)
500 TIGR03496 FliI_clade1 flagella 98.2 2.1E-06 4.5E-11 83.7 5.5 64 77-144 111-174 (411)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-61 Score=419.51 Aligned_cols=222 Identities=24% Similarity=0.376 Sum_probs=194.9
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++|+++||+|+|++ ..+|++||++|++||+++|+||||||||||||||.|| ..|++|+|.++|+++.......+-+
T Consensus 1 ~mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L--E~~~~G~I~i~g~~~~~~~~~~~~R 76 (240)
T COG1126 1 MMIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL--EEPDSGSITVDGEDVGDKKDILKLR 76 (240)
T ss_pred CeEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC--cCCCCceEEECCEeccchhhHHHHH
Confidence 47999999999974 7899999999999999999999999999999999998 6799999999998775432222223
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..+++|||++.+||.+|+.+|+..+.... . ...+++..+.+.++|+++|+. +..+.++.+ ||||||||||||
T Consensus 77 ~~vGmVFQ~fnLFPHlTvleNv~lap~~v---~---~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~q-LSGGQqQRVAIA 148 (240)
T COG1126 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKV---K---KLSKAEAREKALELLEKVGLA-DKADAYPAQ-LSGGQQQRVAIA 148 (240)
T ss_pred HhcCeecccccccccchHHHHHHhhhHHH---c---CCCHHHHHHHHHHHHHHcCch-hhhhhCccc-cCcHHHHHHHHH
Confidence 45889999999999999999987764321 1 234567778889999999997 567888875 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||+.+|+++|+|||||+|||+...++++.+++++++|.|+|+|||++.++..+ +|||++|++|+|+++|+++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V-adrviFmd~G~iie~g~p~~ 222 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV-ADRVIFMDQGKIIEEGPPEE 222 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh-hheEEEeeCCEEEEecCHHH
Confidence 999999999999999999999999999999999999999999999999999998 79999999999999997753
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-56 Score=405.91 Aligned_cols=221 Identities=21% Similarity=0.349 Sum_probs=198.5
Q ss_pred cEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 77 LLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
||++++|+|.|+.. ...+|+||||+|++||++||+|.||||||||+|+|.+| ..|++|+|.++|+++..++....
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L--e~PtsG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL--ERPTSGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCceEEEcCEecccCChHHH
Confidence 68999999999752 24699999999999999999999999999999999998 68999999999999998887543
Q ss_pred h--hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 154 S--LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 154 ~--~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
+ +..|+|+||++.++...|+.+|+.++.... + ..+.+...++.++++.+|+. +..++++.+ ||||||||
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia----g---~~k~ei~~RV~elLelVgL~-dk~~~yP~q-LSGGQKQR 149 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA----G---VPKAEIKQRVAELLELVGLS-DKADRYPAQ-LSGGQKQR 149 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhc----C---CCHHHHHHHHHHHHHHcCCh-hhhccCchh-cCcchhhH
Confidence 2 346999999999999999999998876542 1 33567788999999999997 678888875 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+|||||+.+|+|||+|||||+|||++.+.|+++|+++.++ |.||++|||.|+.+..+ |||++||++|++++.|+..
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~i-c~rVavm~~G~lvE~G~v~ 227 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRI-CDRVAVLDQGRLVEEGTVS 227 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHH-hhhheEeeCCEEEEeccHH
Confidence 99999999999999999999999999999999999999765 99999999999999998 6999999999999999864
No 3
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.8e-56 Score=402.40 Aligned_cols=223 Identities=27% Similarity=0.398 Sum_probs=196.9
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+++++||+++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+ .+|.+|+|.++|+++..++.+++++.
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~--l~p~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL--LKPKSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCCEEEECCCchhhcCHHHHhhh
Confidence 689999999997 47899999999999999999999999999999999998 67999999999999999988877654
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
++|+||.+.....+++.+.+.++..+....++. ..++..+.+.++++.+++. ++.+|.+.+ |||||||||.|||
T Consensus 78 -ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~---~~~~D~~~v~~aL~~~~~~-~la~r~~~~-LSGGerQrv~iAr 151 (258)
T COG1120 78 -LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR---PSKEDEEIVEEALELLGLE-HLADRPVDE-LSGGERQRVLIAR 151 (258)
T ss_pred -EEEeccCCCCCCCcEEeehHhhcCCcccccccC---CCHhHHHHHHHHHHHhCcH-HHhcCcccc-cChhHHHHHHHHH
Confidence 889999987777899999988775443222221 1233345688889999996 788888875 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+++|++|||||||++||..++.+++++++++.+ +|.|||+|+||++++..+ ||++++|++|++++.|+++.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry-ad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY-ADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEECCeEEeecCcch
Confidence 99999999999999999999999999999999984 589999999999999998 79999999999999999863
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-56 Score=393.08 Aligned_cols=220 Identities=19% Similarity=0.303 Sum_probs=199.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
|++++||||+|+ ++.+++|+||+|++||+++++|||||||||+||+|.+| ..|++|+|+++|+++..++..+.++
T Consensus 1 MI~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL--iept~G~I~i~g~~i~~~d~~~LRr- 75 (309)
T COG1125 1 MIEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--IEPTSGEILIDGEDISDLDPVELRR- 75 (309)
T ss_pred CceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc--cCCCCceEEECCeecccCCHHHHHH-
Confidence 689999999997 47899999999999999999999999999999999998 7899999999999999998876554
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-ccccccCCCCCChHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQRv~iA 235 (325)
.+||+-|...+||.+|+.+|+....... ++ .+++..+++.++++.+++++ ++.+|++.+ |||||+|||.+|
T Consensus 76 ~IGYviQqigLFPh~Tv~eNIa~VP~L~----~w---~k~~i~~r~~ELl~lvgL~p~~~~~RyP~e-LSGGQQQRVGv~ 147 (309)
T COG1125 76 KIGYVIQQIGLFPHLTVAENIATVPKLL----GW---DKERIKKRADELLDLVGLDPSEYADRYPHE-LSGGQQQRVGVA 147 (309)
T ss_pred hhhhhhhhcccCCCccHHHHHHhhhhhc----CC---CHHHHHHHHHHHHHHhCCCHHHHhhcCchh-cCcchhhHHHHH
Confidence 4788899999999999999998765431 22 34667788999999999976 588999876 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||+.+|++||||||+++|||.++..+.+.+.++.++ |+|||+||||++++..+ +|||++|++|+|++.++|+.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kL-adri~vm~~G~i~Q~~~P~~ 222 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKL-ADRIAVMDAGEIVQYDTPDE 222 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhh-hceEEEecCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999866 99999999999999988 79999999999999998763
No 5
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.2e-55 Score=382.55 Aligned_cols=224 Identities=27% Similarity=0.413 Sum_probs=199.0
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.+.|++++|+++|++ +.+++|+||+|++||+++|+||||||||||+|+|.|+ .+|++|+|+++|+++..++..++.
T Consensus 6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl--l~P~~GeI~i~G~~i~~ls~~~~~ 81 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL--LRPDKGEILIDGEDIPQLSEEELY 81 (263)
T ss_pred cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc--CCCCCCeEEEcCcchhccCHHHHH
Confidence 678999999999964 7899999999999999999999999999999999998 789999999999999988875542
Q ss_pred --hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 155 --LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 155 --~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
+..++++||+..+|..+|+.||+.+...... ...+....+.+..-|+.+|+.....+..+.+ |||||++|+
T Consensus 82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~------~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsE-LSGGM~KRv 154 (263)
T COG1127 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHT------KLPESLIRELVLMKLELVGLRGAAADLYPSE-LSGGMRKRV 154 (263)
T ss_pred HHHhheeEEeeccccccccchhHhhheehHhhc------cCCHHHHHHHHHHHHHhcCCChhhhhhCchh-hcchHHHHH
Confidence 3458999999999999999999987654321 1234555566777789999986657788875 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+||||++.+|+||++||||+||||.+...+-++|+++++. |.|+|+||||++.+..+ |||++++.+|+|++.|+++.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i-~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTI-ADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhh-hceEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999876 89999999999999887 79999999999999999874
No 6
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.2e-54 Score=381.27 Aligned_cols=215 Identities=24% Similarity=0.365 Sum_probs=183.2
Q ss_pred cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--
Q 020477 77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-- 152 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~-- 152 (325)
+++++||++.|+.+. ..+|+++||+|++||+++|+|||||||||||++|.|+ ..|++|.|.++|+++..++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l--d~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL--DKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCceEEECCEEcCcCCHHHHH
Confidence 478999999996533 3699999999999999999999999999999999998 5789999999999999887644
Q ss_pred -HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 153 -RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 153 -~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
.++..++++||+..+++.+|+.+|+.++..... .. ......++.++++.+|+.....++++. +||||||||
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~----~~---~~~~~~~~~~l~~~lgl~~~~~~~~p~-eLSGGqqQR 150 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG----KS---AGRRKRAAEELLEVLGLEDRLLKKKPS-ELSGGQQQR 150 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC----CC---hhHHHHHHHHHHHhcCChhhhccCCch-hcCHHHHHH
Confidence 334569999999999999999999987653321 11 113345677788999997444436665 499999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
|||||||+.+|++||.||||.+||.++.+.|+++|+++.++ |+||||||||.+.+.. |||++.|++|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~--~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY--ADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh--CCEEEEEeCCeee
Confidence 99999999999999999999999999999999999999765 8999999999988874 6999999999954
No 7
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-54 Score=382.64 Aligned_cols=221 Identities=29% Similarity=0.417 Sum_probs=187.1
Q ss_pred CcEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 76 PLLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
++++++|+++.|+... .++|++|||+|.+||++||+|+||||||||.|+|+|+ .+|++|+|.++|+++........
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl--~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL--EKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCceEEECCcccCccccchh
Confidence 5799999999997521 1499999999999999999999999999999999998 67999999999988765433222
Q ss_pred hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 154 ~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
....+.+|||||. +-|..++.+.+..++.. .+. .+...++.++++.+|+...++++++.+ |||||+||
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~----~~~-----~~~~~~i~~~L~~VgL~~~~l~R~P~e-LSGGQ~QR 149 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP----HGL-----SKSQQRIAELLDQVGLPPSFLDRRPHE-LSGGQRQR 149 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhcc----CCc-----cHHHHHHHHHHHHcCCCHHHHhcCchh-cChhHHHH
Confidence 2345889999986 45666776665544322 111 122344888999999998999999986 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||||||+.+|++||||||||+||...+.+|+++|.+++++ +.|+|+||||+..+..+ ||||+||++|++++.++..
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~-cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM-CDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHH-hhheeeeeCCeEEEeechh
Confidence 99999999999999999999999999999999999999865 78999999999999998 6999999999999998765
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-54 Score=387.28 Aligned_cols=221 Identities=23% Similarity=0.342 Sum_probs=187.2
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++|++++|++. ++|+||||+|++|++++|+||||||||||+|+|+|+ .+|++|+|.++|++..... .
T Consensus 2 ~~~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~~~g~~~~~~~----~ 73 (254)
T COG1121 2 MPMIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL--LKPSSGEIKIFGKPVRKRR----K 73 (254)
T ss_pred CcEEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CcCCcceEEEccccccccc----c
Confidence 4589999999999742 699999999999999999999999999999999998 6899999999998765432 2
Q ss_pred hccEEEeccCCccC--CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 155 LAGLFMSFQSPVEI--PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
...|+||||...+- ...|+.+++.++...+...++.. ..+.++.+.++|+++|+. ++.++.+++ |||||+|||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~---~~~d~~~v~~aL~~Vgm~-~~~~r~i~~-LSGGQ~QRV 148 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRL---NKKDKEKVDEALERVGME-DLRDRQIGE-LSGGQKQRV 148 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccc---cHHHHHHHHHHHHHcCch-hhhCCcccc-cCcHHHHHH
Confidence 34599999976332 23689999887643322222222 223367789999999996 789999986 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
.|||||+++|++|||||||+|+|+.++..|+++|++++++|+||++||||+..+..+ +|+|+.| ++++++.|+++.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~-~D~vi~L-n~~~~~~G~~~~ 224 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY-FDRVICL-NRHLIASGPPEE 224 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh-CCEEEEE-cCeeEeccChhh
Confidence 999999999999999999999999999999999999998899999999999999987 6999877 578889998864
No 9
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-54 Score=378.96 Aligned_cols=226 Identities=26% Similarity=0.340 Sum_probs=195.6
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh-
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS- 154 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~- 154 (325)
.+|+++||++.|++ ++.+|++|||+|++||+++|+|+||||||||||+|.|+ .+|++|+|.++|.++..+..++.+
T Consensus 2 ~~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl--~d~t~G~i~~~g~~i~~~~~k~lr~ 78 (258)
T COG3638 2 MMIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL--VDPTSGEILFNGVQITKLKGKELRK 78 (258)
T ss_pred ceEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc--cCCCcceEEecccchhccchHHHHH
Confidence 47999999999974 57899999999999999999999999999999999998 789999999999999887765432
Q ss_pred -hccEEEeccCCccCCCcchHHHHHHHHHHH----hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 155 -LAGLFMSFQSPVEIPGVNNIDFLHMAYNAR----RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 155 -~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
+..++|+||++.+.+.+++.+|+..+.... ...++.. .++.+..+.++|+++|+. +....+.. +|||||+
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglf---sk~dk~~Al~aLervgi~-~~A~qra~-~LSGGQQ 153 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF---SKEDKAQALDALERVGIL-DKAYQRAS-TLSGGQQ 153 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCC---CHHHHHHHHHHHHHcCcH-HHHHHHhc-cCCcchh
Confidence 346899999999999999999987654211 1122322 244456778899999996 45556665 4999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||+|||||+++|+++|.|||+|+|||.+.+.+++.|+++.+ +|.|||+..|+++++..+ |+||+-|++|+|+++|++
T Consensus 154 QRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y-~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKY-ADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred HHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHH-HhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999999975 489999999999999998 699999999999999998
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 233 ~e 234 (258)
T COG3638 233 SE 234 (258)
T ss_pred hh
Confidence 64
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-54 Score=405.34 Aligned_cols=220 Identities=24% Similarity=0.417 Sum_probs=198.5
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.+.++++||+++|+ +..+++|+||+|++||+++|+||||||||||||+|+|+ ..|++|+|.++|+++..+++..|
T Consensus 3 ~~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf--e~p~~G~I~l~G~~i~~lpp~kR- 77 (352)
T COG3842 3 KPALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF--EQPSSGEILLDGEDITDVPPEKR- 77 (352)
T ss_pred CceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChhhc-
Confidence 45799999999997 47899999999999999999999999999999999999 68999999999999999988754
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
.+++|||+..+||.+|+.+|+.++..... ....++..+++.++++.+++. ++.++++.+ |||||+|||||
T Consensus 78 --~ig~VFQ~YALFPHltV~~NVafGLk~~~------~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~q-LSGGQqQRVAL 147 (352)
T COG3842 78 --PIGMVFQSYALFPHMTVEENVAFGLKVRK------KLKKAEIKARVEEALELVGLE-GFADRKPHQ-LSGGQQQRVAL 147 (352)
T ss_pred --ccceeecCcccCCCCcHHHHhhhhhhhcC------CCCHHHHHHHHHHHHHHcCch-hhhhhChhh-hChHHHHHHHH
Confidence 48899999999999999999988764211 112345667899999999997 688888875 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|+||||.+++..+ +|||+||++|+|.+.|+|+.
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~m-sDrI~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAM-SDRIAVMNDGRIEQVGTPEE 223 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhh-ccceEEccCCceeecCCHHH
Confidence 99999999999999999999999999999999999755 99999999999999887 79999999999999999864
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-54 Score=381.34 Aligned_cols=209 Identities=25% Similarity=0.382 Sum_probs=183.0
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+++++++++.|++ ..+|+|+||+|.+||+++|+||||||||||||+|+|+ .+|++|+|.++|+++..-.
T Consensus 2 ~~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL--~~p~~G~V~~~g~~v~~p~------ 71 (248)
T COG1116 2 ALLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL--EKPTSGEVLLDGRPVTGPG------ 71 (248)
T ss_pred ceEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCcccCCCC------
Confidence 46899999999975 7899999999999999999999999999999999998 6899999999999874322
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|+||++.++|..|+.+|+.++..... ....+..+++.++++.+|+. ++.++++.+ |||||||||+||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-------~~~~e~~~~a~~~L~~VgL~-~~~~~~P~q-LSGGMrQRVaiA 142 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG-------KSKAEARERAKELLELVGLA-GFEDKYPHQ-LSGGMRQRVAIA 142 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc-------cchHhHHHHHHHHHHHcCCc-chhhcCccc-cChHHHHHHHHH
Confidence 247899999999999999999987754321 12344456788999999996 688888875 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeC--CEEEE
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMED--GRIIK 304 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~--G~iv~ 304 (325)
|||+.+|++||||||+++||..++..+.+.|.++. +.++||++||||++++-.+ +|||++|.+ |+|..
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~L-sdRivvl~~~P~~i~~ 213 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYL-ADRVVVLSNRPGRIGE 213 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhh-hCEEEEecCCCcceee
Confidence 99999999999999999999999999999999975 4588999999999999887 799999998 55543
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-53 Score=399.37 Aligned_cols=218 Identities=26% Similarity=0.395 Sum_probs=197.2
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+|+++||++.|++. .+++++||+|+.||+++|+||||||||||||+|+|| ..|++|+|.++|++++.+++..|
T Consensus 2 ~~i~l~~v~K~yg~~--~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL--e~~~~G~I~i~g~~vt~l~P~~R-- 75 (338)
T COG3839 2 AELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL--EEPTSGEILIDGRDVTDLPPEKR-- 75 (338)
T ss_pred cEEEEeeeEEEcCCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChhHC--
Confidence 369999999999742 299999999999999999999999999999999998 68999999999999999988764
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
+++||||++.+||.+|+.+|+.++...+ .....+..+++.++.+.+++. +++++.+.+ ||||||||||||
T Consensus 76 -~iamVFQ~yALyPhmtV~~Niaf~Lk~~-------~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~-LSGGQrQRVAla 145 (338)
T COG3839 76 -GIAMVFQNYALYPHMTVYENIAFGLKLR-------GVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQ-LSGGQRQRVALA 145 (338)
T ss_pred -CEEEEeCCccccCCCcHHHHhhhhhhhC-------CCchHHHHHHHHHHHHHcCCh-hHHhcCccc-CChhhHHHHHHH
Confidence 5899999999999999999998775432 123456678899999999996 789999875 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||+++|+++|||||+|+||...+..+...|+++.++ |.|+|+||||..++..+ +|||++|++|+|.+.|++..
T Consensus 146 RAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtl-adri~Vm~~G~i~Q~g~p~e 220 (338)
T COG3839 146 RALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL-ADRIVVMNDGRIQQVGTPLE 220 (338)
T ss_pred HHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhh-CCEEEEEeCCeeeecCChHH
Confidence 9999999999999999999999999999999998765 88999999999999888 79999999999999998864
No 13
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-53 Score=362.67 Aligned_cols=218 Identities=22% Similarity=0.328 Sum_probs=192.6
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~ 154 (325)
||+++||++.|+++ +.+|+||||+|++||++-|+||||||||||+|+|++. .+|++|+|.++|.++..++..+ .-
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~--e~pt~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE--ERPTRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh--hcCCCceEEECCeecccccccccchh
Confidence 68999999999875 7799999999999999999999999999999999997 6899999999999998876543 12
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..|++|||+..+++..|+.+|+.++.... + ....++..++.+.|+.+|+. +..+..+. +|||||+|||+|
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~----G---~~~~~i~~rV~~~L~~VgL~-~k~~~lP~-~LSGGEQQRvaI 148 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVI----G---KPPREIRRRVSEVLDLVGLK-HKARALPS-QLSGGEQQRVAI 148 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhcc----C---CCHHHHHHHHHHHHHHhccc-hhhhcCcc-ccCchHHHHHHH
Confidence 345889999999999999999998775432 2 23566778899999999997 44555565 499999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
|||++++|++||.||||.+|||....+|++++.++...|+||||+|||.+++..+ ..|++.+++|+++.+..
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~-~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM-RHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc-cCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999998899999999999999987 58899999999987643
No 14
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.6e-52 Score=425.34 Aligned_cols=277 Identities=22% Similarity=0.333 Sum_probs=229.9
Q ss_pred eehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020477 27 VFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGE 106 (325)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge 106 (325)
-|+.|+.++.+++..|+....+..|+.++++.+++............-...++++||+|+|+..+..+|+|+||+|++||
T Consensus 421 ~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge 500 (709)
T COG2274 421 YFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGE 500 (709)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCC
Confidence 36789999999999999999999999999987766544332122223455799999999998765679999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
++||+|+||||||||+|+|+|+ |.|++|+|++||.|+...+....++ .+++++|++.+|.+ |+.||+...
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gl--y~p~~G~I~~dg~dl~~i~~~~lR~-~ig~V~Q~~~Lf~g-SI~eNi~l~------ 570 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGL--YKPQQGRILLDGVDLNDIDLASLRR-QVGYVLQDPFLFSG-SIRENIALG------ 570 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEeHHhcCHHHHHh-heeEEcccchhhcC-cHHHHHhcC------
Confidence 9999999999999999999998 8999999999999999998877654 58899999988875 777776543
Q ss_pred hcCCCCCChHHHH-----HhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020477 187 KLGQPEIGPIEFY-----AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261 (325)
Q Consensus 187 ~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~ 261 (325)
.++.+.++.. +.+.+.+..+.++.+..-..-+.+||||||||++|||||+++|+|||||||||+||+++++.
T Consensus 571 ---~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~ 647 (709)
T COG2274 571 ---NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAI 647 (709)
T ss_pred ---CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHH
Confidence 3333333333 33556677777765555555566799999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCeec
Q 020477 262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKA 321 (325)
Q Consensus 262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~~ 321 (325)
|.+.|.++. +|+|+|+|||++..+.. ||+|+||++|+|+++|+.+ ++++.+|+|+
T Consensus 648 I~~~L~~~~-~~~T~I~IaHRl~ti~~--adrIiVl~~Gkiv~~gs~~--ell~~~g~y~ 702 (709)
T COG2274 648 ILQNLLQIL-QGRTVIIIAHRLSTIRS--ADRIIVLDQGKIVEQGSHE--ELLAQGGLYA 702 (709)
T ss_pred HHHHHHHHh-cCCeEEEEEccchHhhh--ccEEEEccCCceeccCCHH--HHHHhcChHH
Confidence 999999986 46899999999988875 6999999999999999764 6677777653
No 15
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-53 Score=371.53 Aligned_cols=229 Identities=26% Similarity=0.443 Sum_probs=203.8
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.+++++++|+++|++ -.+++||||++++||+++||||||||||||+++|+|+ |+|++|+|.++|+++..+++.++.
T Consensus 2 ~~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~--~~P~~G~v~~~G~~it~l~p~~ia 77 (250)
T COG0411 2 TPLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF--YKPSSGTVIFRGRDITGLPPHRIA 77 (250)
T ss_pred CceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc--ccCCCceEEECCcccCCCCHHHHH
Confidence 357999999999974 7899999999999999999999999999999999998 899999999999999999999988
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHh---hhcCCCC--CChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARR---RKLGQPE--IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
+.|++..||.+.+|+++|+.+|+..+..... ..+..+. ....+..+++.++|+.+|+. +..++..+. ||+||+
T Consensus 78 r~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~-LsyG~q 155 (250)
T COG0411 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGN-LSYGQQ 155 (250)
T ss_pred hccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhc-CChhHh
Confidence 8999999999999999999999987643221 0111111 12455667888999999996 677887765 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
+|+.|||||+.+|++|+||||.+||.+....++.++|+++.++ |.||++|.||++++..+ ||||+||+.|+++++|+|
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l-~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGL-ADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhh-ccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999999999999999874 69999999999999998 699999999999999999
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 235 ~e 236 (250)
T COG0411 235 EE 236 (250)
T ss_pred HH
Confidence 75
No 16
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.3e-52 Score=392.16 Aligned_cols=221 Identities=21% Similarity=0.305 Sum_probs=191.1
Q ss_pred cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH-
Q 020477 77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER- 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~- 153 (325)
||+++||+++|+++ .+++|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++..++....
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl--~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHHH
Confidence 58999999999632 24799999999999999999999999999999999998 68999999999999987765432
Q ss_pred -hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 154 -SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 154 -~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
.+..++|+||++.+++..|+.+++.+.... .+ ....+..+++.++++.+++. +..++.+.+ |||||||||
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~----~~---~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~-LSgGqkQRV 149 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLEL----DN---TPKDEIKRKVTELLALVGLG-DKHDSYPSN-LSGGQKQRV 149 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHH
Confidence 234699999999999989999998765321 11 12334456778899999996 567788765 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|||||+.+|++|||||||++||+.+++.++++|+++.++ |.|||+||||++.+..+ ||+|++|++|++++.|+++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~-~d~v~vl~~G~iv~~g~~~ 226 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRI-CDCVAVISNGELIEQGTVS 226 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999765 89999999999999887 6999999999999999864
No 17
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-51 Score=369.16 Aligned_cols=220 Identities=26% Similarity=0.421 Sum_probs=188.3
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC-CCHHHHh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE-MEPEERS 154 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~-~~~~~~~ 154 (325)
++++++|++++|+++ ..+|+++||+|++||+++|+|+||||||||+++++|+ ++|++|+|.++|.++.. .+....+
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL--l~p~~G~v~~~g~~~~~~~~~~~~~ 78 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL--LKPTSGEVLVDGLDTSSEKSLLELR 78 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc--CcCCCCEEEECCeeccchhhHHHhh
Confidence 478999999999865 6899999999999999999999999999999999998 78999999999998763 2233332
Q ss_pred hccEEEeccCCcc-CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLFMSFQSPVE-IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~~~~Q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
..++++||+|.. +..-|+.+.+.++.. + .+ ...++...++.++++.+++. +++++.+.+ |||||||||+
T Consensus 79 -~~vG~VfQnpd~q~~~~tV~~evafg~~--n--~g---~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~-LSGGqkqRva 148 (235)
T COG1122 79 -QKVGLVFQNPDDQLFGPTVEDEVAFGLE--N--LG---LPREEIEERVAEALELVGLE-ELLDRPPFN-LSGGQKQRVA 148 (235)
T ss_pred -cceEEEEECcccccccCcHHHHHhhchh--h--cC---CCHHHHHHHHHHHHHHcCch-hhccCCccc-cCCcceeeHH
Confidence 348899999953 334467666655432 1 12 23456778899999999996 678888875 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||.+|+.+|++||||||||+||+.+++.++++++++.++ |+|||++|||++++..+ ||++++|++|+++.+|++.
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~-ad~v~vl~~G~i~~~g~p~ 224 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEY-ADRVVVLDDGKILADGDPA 224 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhh-CCEEEEEECCEEeecCCHH
Confidence 999999999999999999999999999999999999877 68999999999999987 7999999999999999864
No 18
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.9e-51 Score=369.36 Aligned_cols=240 Identities=59% Similarity=0.992 Sum_probs=192.2
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+..++|++|+|.++|+++...+...+.+.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999963 579999999999999999999999999999999999732368999999999998776654443446
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++.+++.+++...................+...++.+.++.+++.....++.+...|||||||||+||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 88999999999888998887654322110000001112233456778899999964455666643499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhC
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG 317 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~ 317 (325)
|+.+|++|||||||++||+.+++.+.++|++++++|.|||+||||++++..++||++++|++|++++.|+++.......+
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 238 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKELEEK 238 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhcccccc
Confidence 99999999999999999999999999999999767889999999999998764699999999999999987654444444
Q ss_pred Ce
Q 020477 318 GY 319 (325)
Q Consensus 318 ~~ 319 (325)
+|
T Consensus 239 ~~ 240 (243)
T TIGR01978 239 GY 240 (243)
T ss_pred Cc
Confidence 43
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.9e-51 Score=381.80 Aligned_cols=220 Identities=23% Similarity=0.321 Sum_probs=189.3
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++++++||+++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++.......
T Consensus 5 ~~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl--~~p~~G~v~i~G~~~~~~~~~~-- 78 (306)
T PRK13537 5 VAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL--THPDAGSISLCGEPVPSRARHA-- 78 (306)
T ss_pred CceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEecccchHHH--
Confidence 468999999999964 6799999999999999999999999999999999998 6899999999999986543322
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..++|+||++.+++.+|+.+++.+.... .+ ....+...++.++++.+++. +..++.+.. ||||||||++|
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~l 149 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRY----FG---LSAAAARALVPPLLEFAKLE-NKADAKVGE-LSGGMKRRLTL 149 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hHhcCchhh-CCHHHHHHHHH
Confidence 34588999999999989999988653221 11 12233445677889999996 567777764 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+++|++|||||||+|||+.+++.++++|++++++|+|||++||+++++..+ ||+|++|++|++++.|+++.
T Consensus 150 a~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~-~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-CDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred HHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999977789999999999999888 69999999999999998764
No 20
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-52 Score=374.87 Aligned_cols=219 Identities=19% Similarity=0.309 Sum_probs=192.7
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE---eCCCCCHHHH
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE---NLLEMEPEER 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~---~i~~~~~~~~ 153 (325)
+|+++|+++.|+. ..+++|||++|+.||++||+||||||||||||+|+|| ..|++|+|.++|+ |.+.....
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL--e~p~~G~I~~~~~~l~D~~~~~~~-- 75 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL--ETPDAGRIRLNGRVLFDVSNLAVR-- 75 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc--CCCCCceEEECCEeccchhccchh--
Confidence 5889999999974 6799999999999999999999999999999999998 6899999999999 55443332
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
...||++||++.+|+.+|+.+|+.++...+ .....+.+...++.++|+.+.++ .+.++++.+ ||||||||||
T Consensus 76 -~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-----~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~Q-LSGGQrQRVA 147 (345)
T COG1118 76 -DRKVGFVFQHYALFPHMTVADNIAFGLKVR-----KERPSEAEIRARVEELLRLVQLE-GLADRYPAQ-LSGGQRQRVA 147 (345)
T ss_pred -hcceeEEEechhhcccchHHhhhhhccccc-----ccCCChhhHHHHHHHHHHHhccc-chhhcCchh-cChHHHHHHH
Confidence 235899999999999999999998876433 11123456677889999999996 678888875 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||||+.+|++||||||+++||...+.++..-|+++.++ |.|.|+||||.+++..+ +|||++|++|+|...|+++.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~l-adrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL-ADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhh-cceEEEecCCeeeeeCCHHH
Confidence 999999999999999999999999999999999999876 89999999999999998 69999999999999998864
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-51 Score=388.19 Aligned_cols=218 Identities=23% Similarity=0.339 Sum_probs=191.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...++.. .
T Consensus 3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl--~~p~~G~I~~~g~~i~~~~~~~---r 76 (356)
T PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL--ERITSGEIWIGGRVVNELEPAD---R 76 (356)
T ss_pred EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC--CCCCceEEEECCEECCCCCHHH---C
Confidence 6999999999942 36799999999999999999999999999999999998 6799999999999998766543 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+|+.+++.+|+.+..... .....+...++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~-------~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LSgGq~QRvalAR 147 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIR-------GMPKAEIEERVAEAARILELE-PLLDRKPRE-LSGGQRQRVAMGR 147 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhc-------CCCHHHHHHHHHHHHHHcCCh-hHhhCChhh-CCHHHHHHHHHHH
Confidence 6899999999999999999987654211 112334456678899999996 678888875 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+.+|++|||||||++||+.+++.+.+.|+++.++ |.|+|+||||++++..+ +|+|++|++|++++.|+++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l-~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTL-ADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEeCCEEEEECCHHH
Confidence 999999999999999999999999999999998765 89999999999999887 69999999999999998753
No 22
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-50 Score=385.79 Aligned_cols=219 Identities=21% Similarity=0.368 Sum_probs=192.3
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...++..
T Consensus 4 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~~~g~~i~~~~~~~-- 77 (351)
T PRK11432 4 KNFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL--EKPTEGQIFIDGEDVTHRSIQQ-- 77 (351)
T ss_pred CcEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC--CCCCceEEEECCEECCCCCHHH--
Confidence 458999999999963 6799999999999999999999999999999999998 6899999999999998765432
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..++|+||++.+|+.+|+.+|+.+..... + ....+...++.++++.+++. ++.++.+.+ |||||||||+|
T Consensus 78 -r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~----~---~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~-LSgGq~QRVaL 147 (351)
T PRK11432 78 -RDICMVFQSYALFPHMSLGENVGYGLKML----G---VPKEERKQRVKEALELVDLA-GFEDRYVDQ-ISGGQQQRVAL 147 (351)
T ss_pred -CCEEEEeCCcccCCCCCHHHHHHHHHhHc----C---CCHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHH
Confidence 35899999999999999999987764321 1 12344456788899999996 577888765 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|+||||++++..+ +|+|++|++|++++.|+++.
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l-aD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV-SDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999765 89999999999999887 69999999999999998763
No 23
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-50 Score=365.51 Aligned_cols=219 Identities=27% Similarity=0.395 Sum_probs=184.5
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH--HHhh
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE--ERSL 155 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~--~~~~ 155 (325)
|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.. ...+
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL--LRPDSGEVLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccChhhHHHHh
Confidence 478999999963 5799999999999999999999999999999999998 679999999999998765432 1123
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|++|++.+++.+++.+++....... . .....+...++.++++.+++. +..++.+.+ |||||||||+||
T Consensus 77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~----~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~ia 148 (235)
T cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREH----T--RLSEEEIREIVLEKLEAVGLR-GAEDLYPAE-LSGGMKKRVALA 148 (235)
T ss_pred cceEEEccCcccCCCCcHHHHHHHHHhhc----c--CCCHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHHH
Confidence 46889999999888889998876542210 0 112233345677789999995 456777764 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+.+|++|||||||+|||+.+++.+++.|+++.++ |+|||+||||++++..+ ||++++|++|++++.|+++
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~-~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAI-ADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh-cCEEEEEECCeEEEecCHH
Confidence 9999999999999999999999999999999998764 88999999999998877 6999999999999998765
No 24
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-50 Score=362.31 Aligned_cols=214 Identities=22% Similarity=0.343 Sum_probs=179.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~ 154 (325)
||+++|++++|+++.+.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+... ..
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI--EKPTRGKIRFNGQDLTRLRGREIPFL 78 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEehhhcChhHHHHH
Confidence 5899999999964334699999999999999999999999999999999998 6799999999999886554322 11
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..++|++|++.+++..++.+++...... .+ ....+...++.++++.+++. +..++.+.+ |||||||||+|
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~l 149 (216)
T TIGR00960 79 RRHIGMVFQDHRLLSDRTVYDNVAFPLRI----IG---VPPRDANERVSAALEKVGLE-GKAHALPMQ-LSGGEQQRVAI 149 (216)
T ss_pred HHhceEEecCccccccccHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHHHHH
Confidence 23588999999888888999887654321 11 11223345677889999996 566777764 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||+||||++++..+ ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~-~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY-RHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEeCCcC
Confidence 9999999999999999999999999999999999976688999999999999877 699999999975
No 25
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-51 Score=353.15 Aligned_cols=219 Identities=22% Similarity=0.339 Sum_probs=193.2
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
||++.+++++|+. ...+++||||+++.||++||+|||||||||+||+|+++ +.|++|.|+++|.+....+...+++.
T Consensus 1 Ml~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl--L~P~~G~v~idg~d~~~~p~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL--LIPDSGKVTIDGVDTVRDPSFVRRKI 77 (245)
T ss_pred CeeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh--ccCCCceEEEeecccccChHHHhhhc
Confidence 6899999999985 34599999999999999999999999999999999998 67999999999999888776666654
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
+.++-...+|..+|+.+++.+..... .....+..+++.++.+.+++. +.+++++++ ||.||||||+|||
T Consensus 78 --GVl~~e~glY~RlT~rEnl~~Fa~L~-------~l~~~~~kari~~l~k~l~l~-~~~~rRv~~-~S~G~kqkV~iAR 146 (245)
T COG4555 78 --GVLFGERGLYARLTARENLKYFARLN-------GLSRKEIKARIAELSKRLQLL-EYLDRRVGE-FSTGMKQKVAIAR 146 (245)
T ss_pred --ceecCCcChhhhhhHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHhChH-HHHHHHHhh-hchhhHHHHHHHH
Confidence 45565556788899999987654332 123455677888999999996 789999986 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+++|++++|||||+|||..+.+.+.+.+++++++|++||++||++++++.+ ||+|+++++|+++..|+.+.
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Eveal-CDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEAL-CDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHh-hheEEEEecCcEEEcCCHHH
Confidence 99999999999999999999999999999999998899999999999999988 69999999999999998764
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.8e-50 Score=385.28 Aligned_cols=217 Identities=22% Similarity=0.350 Sum_probs=191.5
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++...++..
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl--~~p~~G~I~i~g~~~~~~~~~~--- 75 (353)
T TIGR03265 3 PYLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL--ERQTAGTIYQGGRDITRLPPQK--- 75 (353)
T ss_pred cEEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--CCCCceEEEECCEECCCCCHHH---
Confidence 47999999999964 6799999999999999999999999999999999998 6799999999999997766542
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|+||++.+|+.+++.+|+.+..... .....+...++.++++.+++. +++++.+.+ |||||||||+||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~-------~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~-LSgGq~QRvaLA 146 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNR-------GMGRAEVAERVAELLDLVGLP-GSERKYPGQ-LSGGQQQRVALA 146 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHcCCC-chhhCChhh-CCHHHHHHHHHH
Confidence 35899999999999999999987764321 112334456788899999996 678888865 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+.+|++|||||||++||+.+++.+.+.|+++.++ |.|+|+||||++++..+ +|+|++|++|++++.|+++
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l-~d~i~vl~~G~i~~~g~~~ 220 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSM-ADRIVVMNHGVIEQVGTPQ 220 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999998765 88999999999999887 6999999999999999875
No 27
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.8e-50 Score=376.29 Aligned_cols=220 Identities=26% Similarity=0.360 Sum_probs=189.2
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
..++++||+++|++ ++.+|+||||+|++||++||+||||||||||+|+|+|+ ..|++|+|.++|.+........+
T Consensus 3 ~~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl--~~p~~G~i~i~G~~~~~~~~~~~-- 77 (293)
T COG1131 3 EVIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL--LKPTSGEILVLGYDVVKEPAKVR-- 77 (293)
T ss_pred ceeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEEcCEeCccCHHHHH--
Confidence 36889999999972 36899999999999999999999999999999999998 68999999999998765422222
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|++|++.+++.+|+.+++.+...... .. .....+++.++++.+++.. ..++.+. +||+|||||++||
T Consensus 78 ~~igy~~~~~~~~~~lT~~e~l~~~~~l~~----~~---~~~~~~~~~~~l~~~~L~~-~~~~~~~-~lS~G~kqrl~ia 148 (293)
T COG1131 78 RRIGYVPQEPSLYPELTVRENLEFFARLYG----LS---KEEAEERIEELLELFGLED-KANKKVR-TLSGGMKQRLSIA 148 (293)
T ss_pred hheEEEccCCCCCccccHHHHHHHHHHHhC----CC---hhHHHHHHHHHHHHcCCch-hhCcchh-hcCHHHHHHHHHH
Confidence 348899999999999999999887654321 11 1233456888999999974 3456665 4999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC-cEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK-NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+||+++|++|||||||+|||+.++..++++|++++++| .||+++||.++.+..+ ||+|++|++|++++.|+++.
T Consensus 149 ~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~-~d~v~il~~G~~~~~g~~~~ 223 (293)
T COG1131 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL-CDRVIILNDGKIIAEGTPEE 223 (293)
T ss_pred HHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh-CCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999876 7999999999999998 79999999999999997654
No 28
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6e-50 Score=378.83 Aligned_cols=227 Identities=26% Similarity=0.409 Sum_probs=191.2
Q ss_pred CCCcEEEEEEEEEECCC-----------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC
Q 020477 74 SQPLLQVTGLTAVIAES-----------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~-----------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g 142 (325)
.+++|+++||+++|+.. ...+++|+||+|++||++||+|+||||||||+++|+|+ .+|++|+|.++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl--~~p~~G~I~~~G 82 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL--VKATDGEVAWLG 82 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--CCCCCcEEEECC
Confidence 45789999999999631 24699999999999999999999999999999999998 678999999999
Q ss_pred EeCCCCCHHHH--hhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccc
Q 020477 143 ENLLEMEPEER--SLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR 218 (325)
Q Consensus 143 ~~i~~~~~~~~--~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 218 (325)
+++...+.... .+..++|+||++ .+++.+++.+++........ ......+...++.++++.+++..+.+++
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-----PKLSRQEVKDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHcCCChHHhcC
Confidence 99987765431 224699999998 47778899888765432110 0122344456677889999995456778
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 219 NVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 219 ~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
.+.+ |||||+|||+|||||+.+|++||+||||++||+.++.+++++|+++.++ |.|||+||||++++..+ ||+|++|
T Consensus 158 ~p~~-LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~-~dri~vl 235 (331)
T PRK15079 158 YPHE-FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHI-SDRVLVM 235 (331)
T ss_pred Cccc-CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 8775 9999999999999999999999999999999999999999999999764 89999999999999887 6999999
Q ss_pred eCCEEEEEcCcc
Q 020477 298 EDGRIIKTGDAS 309 (325)
Q Consensus 298 ~~G~iv~~g~~~ 309 (325)
++|+|++.|+.+
T Consensus 236 ~~G~ive~g~~~ 247 (331)
T PRK15079 236 YLGHAVELGTYD 247 (331)
T ss_pred ECCEEEEEcCHH
Confidence 999999999764
No 29
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-50 Score=350.46 Aligned_cols=242 Identities=57% Similarity=0.919 Sum_probs=221.8
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+|+++||+++..+ .+.+|++|||+|++||+++|+||||||||||.++|+|.+.|.+++|+|.++|+++..+++.+|++
T Consensus 2 ~~L~I~dLhv~v~~-~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEG-KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecC-chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47999999999863 25899999999999999999999999999999999999889999999999999999999999999
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
.|+.+.||.|.-+++.++.+++..+++......+ . ..++...+.+.++.+++.+.+++|.+..++|||||+|..|+
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~---~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Eil 156 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARG---I-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEIL 156 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhcccc---c-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHH
Confidence 9999999999999999999999888765432211 2 34566778889999999888999999999999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLE 315 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~ 315 (325)
.+++.+|++.|||||-||||..+-+.+.+.+++++.+|.++++|||..+++..+..|++.||.+|+|+..|.++..+.++
T Consensus 157 Q~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~el~~~le 236 (251)
T COG0396 157 QLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELE 236 (251)
T ss_pred HHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999998888999999999999999998888899
Q ss_pred hCCeecc
Q 020477 316 EGGYKAI 322 (325)
Q Consensus 316 ~~~~~~~ 322 (325)
+.||..+
T Consensus 237 ~~gy~~~ 243 (251)
T COG0396 237 EKGYDWL 243 (251)
T ss_pred HhchHHh
Confidence 9998654
No 30
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.8e-50 Score=385.31 Aligned_cols=221 Identities=21% Similarity=0.396 Sum_probs=192.8
Q ss_pred CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
...++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++...++..
T Consensus 10 ~~~~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl--~~p~~G~I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 10 SLSPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF--ETPDSGRIMLDGQDITHVPAEN 85 (375)
T ss_pred cCCceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHH
Confidence 34668999999999964 5799999999999999999999999999999999998 6799999999999997766543
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
..++|+||++.+|+.+++.+|+.+..... + ....+...++.++++.+++. +++++.+.+ |||||||||
T Consensus 86 ---r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~-LSgGq~QRV 153 (375)
T PRK09452 86 ---RHVNTVFQSYALFPHMTVFENVAFGLRMQ----K---TPAAEITPRVMEALRMVQLE-EFAQRKPHQ-LSGGQQQRV 153 (375)
T ss_pred ---CCEEEEecCcccCCCCCHHHHHHHHHhhc----C---CCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHH
Confidence 35899999999999999999987654311 1 12234445678889999996 678888865 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+|||||+.+|++|||||||++||...++.+.+.|+++.++ |.|+|+||||++++..+ +|+|++|++|++++.|+++.
T Consensus 154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~l-aDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTM-SDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999765 89999999999998887 69999999999999998753
No 31
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=6.5e-50 Score=379.69 Aligned_cols=221 Identities=22% Similarity=0.317 Sum_probs=188.8
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++|+++||+++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|+++..... .
T Consensus 38 ~~~~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl--~~p~~G~i~i~G~~~~~~~~--~ 111 (340)
T PRK13536 38 STVAIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM--TSPDAGKITVLGVPVPARAR--L 111 (340)
T ss_pred CceeEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCceEEEECCEECCcchH--H
Confidence 3468999999999964 5799999999999999999999999999999999998 68999999999999865432 2
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
.+..++++||++.+++.+++.+++.+.... .+ ....+....+.++++.+++. +..++.+.. |||||||||+
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~-LS~G~kqrv~ 182 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRY----FG---MSTREIEAVIPSLLEFARLE-SKADARVSD-LSGGMKRRLT 182 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhCCChhh-CCHHHHHHHH
Confidence 234689999999998889999987653211 11 11223344566788999996 567777764 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+||+++|++|||||||+|||+.+++.++++|++++++|+|||++||+++++..+ ||+|++|++|++++.|+++.
T Consensus 183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~-~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL-CDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999977789999999999999988 69999999999999998764
No 32
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-50 Score=380.05 Aligned_cols=221 Identities=22% Similarity=0.354 Sum_probs=188.5
Q ss_pred cEEEEEEEEEECC--CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH-
Q 020477 77 LLQVTGLTAVIAE--SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER- 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~--~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~- 153 (325)
||+++||+++|+. .++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl--~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL--ERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCcCCHHHHH
Confidence 5899999999972 135799999999999999999999999999999999998 67999999999999877664432
Q ss_pred -hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 154 -SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 154 -~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
.+..++|+||++.+++.+++.+++.+.... .+ ....+...++.++++.+++. +..++.+.+ |||||||||
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LSgGq~qRv 149 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLEL----AG---TPKAEIKARVTELLELVGLS-DKADRYPAQ-LSGGQKQRV 149 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHH
Confidence 234689999999988889999988664321 11 12233445677889999996 567777765 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|||||+.+|++|||||||+|||+.+++.++++|+++.++ |+|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~-~d~v~~l~~G~i~~~g~~~ 226 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRI-CDRVAVIDAGRLVEQGTVS 226 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999754 88999999999999887 6999999999999998764
No 33
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-51 Score=352.31 Aligned_cols=223 Identities=23% Similarity=0.327 Sum_probs=199.7
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++|.++||.|+|++ ++++++|||+|++||++||+|||||||||.+.++.|+ .+|++|+|.++|.+++.++...|++
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl--v~~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL--VRPDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE--EecCCceEEECCcccccCChHHHhh
Confidence 47899999999964 7899999999999999999999999999999999998 7899999999999999999999999
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
.|++|.||++..|..+|+.+|+......... +....+...++.++|+.|.+. +..+.+.. +||||||+|+.||
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-----d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~-sLSGGERRR~EIA 151 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREK-----DLKKAERKEELDALLEEFHIT-HLRDSKAY-SLSGGERRRVEIA 151 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhc-----chhHHHHHHHHHHHHHHhchH-HHhcCccc-ccccchHHHHHHH
Confidence 9999999999999999999999877654321 111233445677899999996 56666655 5999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||+.+|+++|||||+||+||.+...|.++++.|+..|..|+++-|+.++...+ |||.+++.+|++.++|+++.
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i-~dRaYIi~~G~vla~G~p~e 225 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDI-CDRAYIISDGKVLAEGSPEE 225 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhh-hheEEEEecCeEEecCCHHH
Confidence 999999999999999999999999999999999998899999999999988888 69999999999999999863
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=7.3e-50 Score=381.97 Aligned_cols=217 Identities=22% Similarity=0.361 Sum_probs=190.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCc--cEEEECCEeCCCCCHHHHh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE--GSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~--G~I~~~g~~i~~~~~~~~~ 154 (325)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ .+|++ |+|.++|+++...++..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~~~G~i~~~g~~~~~~~~~~-- 78 (362)
T TIGR03258 5 GIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF--VKAAGLTGRIAIADRDLTHAPPHK-- 78 (362)
T ss_pred EEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCCEEEEECCEECCCCCHHH--
Confidence 5899999999964 5799999999999999999999999999999999998 67999 99999999987665432
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..++|+||++.+|+.+|+.+|+.+..... + ....+...++.++++.+++. ++.++.+.+ |||||||||+|
T Consensus 79 -r~ig~vfQ~~~l~p~~tv~enl~~~l~~~----~---~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~-LSgGq~QRvaL 148 (362)
T TIGR03258 79 -RGLALLFQNYALFPHLKVEDNVAFGLRAQ----K---MPKADIAERVADALKLVGLG-DAAAHLPAQ-LSGGMQQRIAI 148 (362)
T ss_pred -CCEEEEECCcccCCCCcHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHhcCCC-chhhCChhh-CCHHHHHHHHH
Confidence 35899999999999999999987764321 1 12334456688899999996 678888875 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC--CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP--KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|+||||++++..+ +|+|++|++|++++.|+++.
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l-~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTL-ADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999765 78999999999999887 69999999999999998753
No 35
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.7e-49 Score=362.35 Aligned_cols=243 Identities=58% Similarity=1.041 Sum_probs=194.0
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||++.|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+..++|++|+|.++|.++...+...+.
T Consensus 5 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 5 KPILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred CceEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 458999999999963 579999999999999999999999999999999999732468999999999998776654444
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..++++++|++.+++..++.+++...+...............+....+.++++.+++.....++.+.+.|||||+|||+|
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 44688899999888888888876554321100000111112233355677889999853355666653499999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVL 314 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~ 314 (325)
||||+.+|++|||||||+|||+.+++.+.++|+++.++|.|||++|||++++..+.+|++++|++|++++.|+++....+
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 242 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAKEL 242 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhhhhh
Confidence 99999999999999999999999999999999998766889999999999887654699999999999999988755545
Q ss_pred HhCCe
Q 020477 315 EEGGY 319 (325)
Q Consensus 315 ~~~~~ 319 (325)
+..+|
T Consensus 243 ~~~~~ 247 (252)
T CHL00131 243 EKKGY 247 (252)
T ss_pred cccCc
Confidence 54444
No 36
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-50 Score=351.96 Aligned_cols=221 Identities=28% Similarity=0.412 Sum_probs=192.3
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++|+++||+..|+. .++|++|||++++||+++|+|+||+|||||+|+|+|+ .++.+|+|.|+|+|+...++.++.+
T Consensus 2 ~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl--~~~~~G~I~~~G~dit~~p~~~r~r 77 (237)
T COG0410 2 PMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL--VRPRSGRIIFDGEDITGLPPHERAR 77 (237)
T ss_pred CceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeeEEECCeecCCCCHHHHHh
Confidence 58999999999975 6899999999999999999999999999999999998 6788999999999999999999999
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
.+++||||....|+.+|+.||+..+....... ......++++.+.|..-.+..++..+. |||||+|.++||
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~--------~~~~~~~e~v~~lFP~Lker~~~~aG~-LSGGEQQMLAia 148 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDK--------EAQERDLEEVYELFPRLKERRNQRAGT-LSGGEQQMLAIA 148 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhccccc--------ccccccHHHHHHHChhHHHHhcCcccC-CChHHHHHHHHH
Confidence 99999999999999999999998764322110 000111445556665433556666664 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||+.+|++|+|||||.||-|.-.++|.+.|++++++ |.||++|.++..++..+ +||.+||++|+|+.+|+.+.
T Consensus 149 RALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~i-aDr~yvle~Griv~~G~~~e 223 (237)
T COG0410 149 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEI-ADRGYVLENGRIVLSGTAAE 223 (237)
T ss_pred HHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHh-hCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999865 78999999999999988 79999999999999998764
No 37
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.1e-49 Score=360.22 Aligned_cols=224 Identities=28% Similarity=0.447 Sum_probs=186.2
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+...+.+.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF--LRPTSGSVLFDGEDITGLPPHEIARLG 76 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCceEEECCEECCCCCHHHHHhcC
Confidence 478999999963 5799999999999999999999999999999999998 678999999999998776654433356
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCC----CCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP----EIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
++|++|++.+++.+++.+++......... .... .....+....+.++++.+++. +..++.+.+ |||||||||+
T Consensus 77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~ 153 (236)
T cd03219 77 IGRTFQIPRLFPELTVLENVMVAAQARTG-SGLLLARARREEREARERAEELLERVGLA-DLADRPAGE-LSYGQQRRLE 153 (236)
T ss_pred EEEEecccccccCCCHHHHHHHHHhhccc-cccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhh-CCHHHHHHHH
Confidence 89999999999889999988654321100 0000 001223345677889999996 556777764 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++.+++.|++++++|+|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 228 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSL-ADRVTVLDQGRVIAEGTPD 228 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEEeCCEEEeecCHH
Confidence 99999999999999999999999999999999999876788999999999999887 6999999999999988765
No 38
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.2e-49 Score=379.64 Aligned_cols=221 Identities=18% Similarity=0.314 Sum_probs=189.9
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.. +.
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~i~g~~i~~~~~~---~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL--EHQTSGHIRFHGTDVSRLHAR---DR 74 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHH---HC
Confidence 4899999999964 5799999999999999999999999999999999998 689999999999998765442 23
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+|+.+++.+|+.+...... ........+...++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~-LSgGq~QRvalAr 149 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLP---RRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQ-LSGGQKQRVALAR 149 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcc---cccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHHHHHH
Confidence 58999999999999999999876542110 000112334456788899999996 677888865 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+.+|++|||||||++||+.+++.+.+.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|+++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~-~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEV-ADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999765 88999999999999887 69999999999999998753
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-50 Score=355.84 Aligned_cols=212 Identities=25% Similarity=0.405 Sum_probs=179.1
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.. +..
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~---~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL--ERPDSGEILIDGRDVTGVPPE---RRN 73 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcCcCchh---hcc
Confidence 478999999964 5799999999999999999999999999999999998 679999999999988654321 235
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++..++.+++...... .+ ....+....+.++++.+++. +..++.+.+ ||||||||++||||
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrl~la~a 144 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKL----RG---VPKAEIRARVRELLELVGLE-GLLNRYPHE-LSGGQQQRVALARA 144 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hhhhcChhh-CCHHHHHHHHHHHH
Confidence 88999999888888998887654321 11 11223334567789999996 556777664 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|+.+|++|||||||+|||+.+++.+++.|+++++ .|.|||++|||++++..+ ||++++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALAL-ADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh-cCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999875 488999999999998887 6999999999998754
No 40
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.4e-49 Score=358.61 Aligned_cols=218 Identities=23% Similarity=0.350 Sum_probs=184.8
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++...+...+.+..
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL--VKPDSGKILLDGQDITKLPMHKRARLG 76 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccCCHhHHHhcc
Confidence 478999999963 5799999999999999999999999999999999998 679999999999988765544433346
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++.+++.+++...... .+ ....+....+.++++.+++. +..++.+. .||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrl~la~a 147 (232)
T cd03218 77 IGYLPQEASIFRKLTVEENILAVLEI----RG---LSKKEREEKLEELLEEFHIT-HLRKSKAS-SLSGGERRRVEIARA 147 (232)
T ss_pred EEEecCCccccccCcHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCh-hhhhCChh-hCCHHHHHHHHHHHH
Confidence 88999999888888999887654321 11 11223334567788999986 55677765 499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+.+|++|||||||+|||+.+++.+.++|+++.+++.|||++|||++.+..+ ||++++|++|++++.|+.+
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 218 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSI-TDRAYIIYEGKVLAEGTPE 218 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCeEEEEeCHH
Confidence 9999999999999999999999999999999876788999999999988887 6999999999999988765
No 41
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-49 Score=387.33 Aligned_cols=268 Identities=24% Similarity=0.384 Sum_probs=209.1
Q ss_pred chHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCC--CCCCCC--cEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020477 31 PALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQ--DEKSQP--LLQVTGLTAVIAESKQEILKGVNLLVNEGE 106 (325)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~--~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge 106 (325)
=..|+|.+++.||.+..+....+.+....+.+........ .....+ .++++|+++.|+++ +++++|+||++++|+
T Consensus 270 ff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g-~~~l~~l~~t~~~g~ 348 (559)
T COG4988 270 FFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG-KPALSDLNLTIKAGQ 348 (559)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC-CcccCCceeEecCCc
Confidence 3579999999999999996666555544444443222221 122323 45556999999865 489999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
.+||+|+||||||||+++|+|+ .+|++|+|.+||.++.+++...+++ .+.|++|+|.+|++ |..+|+.++
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G~I~vng~~l~~l~~~~~~k-~i~~v~Q~p~lf~g-TireNi~l~------ 418 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGF--LAPTQGEIRVNGIDLRDLSPEAWRK-QISWVSQNPYLFAG-TIRENILLA------ 418 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCceEEECCccccccCHHHHHh-HeeeeCCCCccccc-cHHHHhhcc------
Confidence 9999999999999999999998 7889999999999999998877664 48899999998875 677776543
Q ss_pred hcCCCCCChHHHHHhHHHHHHhcCCc-----cccccccC---CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHH
Q 020477 187 KLGQPEIGPIEFYAYLYPKLERLSMK-----TDFLNRNV---NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~---~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~ 258 (325)
.++.++++.. +++++.++. ++-+|..+ +..|||||+|||++||||+++++++|||||||+||.++
T Consensus 419 ---~~~~s~e~i~----~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 419 ---RPDASDEEII----AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred ---CCcCCHHHHH----HHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence 2333344433 334444332 11223222 33599999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCeec
Q 020477 259 LRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKA 321 (325)
Q Consensus 259 ~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~~ 321 (325)
++.|.+.|.++.++ +|+|+|||++..+.. +|+|++|++|++++.|.++ ++.++.|+|+
T Consensus 492 E~~i~~~l~~l~~~-ktvl~itHrl~~~~~--~D~I~vld~G~l~~~g~~~--~L~~~~~~y~ 549 (559)
T COG4988 492 EQIILQALQELAKQ-KTVLVITHRLEDAAD--ADRIVVLDNGRLVEQGTHE--ELSEKQGLYA 549 (559)
T ss_pred HHHHHHHHHHHHhC-CeEEEEEcChHHHhc--CCEEEEecCCceeccCCHH--HHhhcCcHHH
Confidence 99999999999765 899999999988876 6999999999999999765 5666777543
No 42
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.4e-49 Score=383.77 Aligned_cols=224 Identities=23% Similarity=0.345 Sum_probs=191.2
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+....+
T Consensus 2 ~~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl--l~p~sG~I~l~G~~i~~~~~~~~~- 76 (402)
T PRK09536 2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT--LTPTAGTVLVAGDDVEALSARAAS- 76 (402)
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--CCCCCcEEEECCEEcCcCCHHHHh-
Confidence 47999999999964 6899999999999999999999999999999999998 689999999999999877655443
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..+++++|++.+++.+++.+++.+........+.. . ..+..+++.++++.+++. ++.++.+.+ |||||||||+||
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~--~-~~~~~~~v~~~le~vgl~-~~~~~~~~~-LSgGerQRv~IA 151 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDT--W-TETDRAAVERAMERTGVA-QFADRPVTS-LSGGERQRVLLA 151 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhccchhcccccC--C-CHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHHH
Confidence 35889999998888899999887643211001110 1 123345678889999996 677787765 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||+++|++|||||||+|||+.++.+++++|+++.++|.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~-adrii~l~~G~iv~~G~~~e 225 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARY-CDELVLLADGRVRAAGPPAD 225 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999986788999999999999887 69999999999999998763
No 43
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-49 Score=380.26 Aligned_cols=220 Identities=25% Similarity=0.394 Sum_probs=191.7
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...++..
T Consensus 16 ~~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~i~g~~i~~~~~~~- 90 (377)
T PRK11607 16 LTPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF--EQPTAGQIMLDGVDLSHVPPYQ- 90 (377)
T ss_pred CCceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHH-
Confidence 4568999999999963 5799999999999999999999999999999999998 6799999999999987765432
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
..++|+||++.+|+.+++.+|+.+..... .....+...++.++++.+++. ++.++.+.+ |||||||||+
T Consensus 91 --r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~-------~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~-LSgGq~QRVa 159 (377)
T PRK11607 91 --RPINMMFQSYALFPHMTVEQNIAFGLKQD-------KLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQ-LSGGQRQRVA 159 (377)
T ss_pred --CCEEEEeCCCccCCCCCHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHH
Confidence 35899999999999999999987654321 112344456778899999996 677888765 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||||+.+|++|||||||++||+..++.+.+.|+++.++ |.|+|+||||++++..+ +|++++|++|++++.|+++.
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l-aDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTM-AGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh-CCEEEEEeCCEEEEEcCHHH
Confidence 999999999999999999999999999999999988654 88999999999998887 69999999999999998753
No 44
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-49 Score=356.68 Aligned_cols=220 Identities=26% Similarity=0.354 Sum_probs=184.2
Q ss_pred CCcEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 75 QPLLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
.++++++||++.|+++. +++|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+...
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL--DTPTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCCHHH
Confidence 35899999999996422 4699999999999999999999999999999999998 6799999999999987766543
Q ss_pred H---hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 153 R---SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 153 ~---~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
+ +...++|++|++.+++.+++.+++....... + ....+...++.++++.+++. +..++.+. +||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgG~~ 151 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG----K---KKPAEINSRALEMLAAVGLE-HRANHRPS-ELSGGER 151 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCc-hhhhCChh-hCCHHHH
Confidence 2 2246899999998888889999876543210 1 11223345677889999996 55666665 4999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +|.|||++|||++++... +++++|++|++++.++
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~--~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM--SRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh--CEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999865 488999999999998764 5888999999998875
No 45
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-49 Score=373.78 Aligned_cols=225 Identities=26% Similarity=0.390 Sum_probs=188.2
Q ss_pred CCcEEEEEEEEEECCC--------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020477 75 QPLLQVTGLTAVIAES--------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~--------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~ 146 (325)
.++|+++||++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|+++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl--~~p~~G~i~~~g~~l~ 80 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI--ETPTGGELYYQGQDLL 80 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCcEEEECCEEcC
Confidence 4589999999999631 24699999999999999999999999999999999998 6789999999999998
Q ss_pred CCCHHHH--hhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC
Q 020477 147 EMEPEER--SLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE 222 (325)
Q Consensus 147 ~~~~~~~--~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 222 (325)
.++.... .+..++|+||++ .+.+.+++.+++....... . .....+...++.++++.+++....+++.+.+
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~---~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~ 154 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN---T---SLSAAERREKALAMMAKVGLRPEHYDRYPHM 154 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc---c---CCCHHHHHHHHHHHHHHCCCChHHhcCCCcc
Confidence 7765431 224689999998 4667778777665432211 0 1123344567888999999964567777765
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
|||||+|||+|||||+.+|++||+||||++||..++.+++++|++++++ |.|||+||||+.++..+ ||+|++|++|+
T Consensus 155 -LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~-adrv~vm~~G~ 232 (327)
T PRK11308 155 -FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHI-ADEVMVMYLGR 232 (327)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999764 89999999999999887 69999999999
Q ss_pred EEEEcCcc
Q 020477 302 IIKTGDAS 309 (325)
Q Consensus 302 iv~~g~~~ 309 (325)
|++.|+.+
T Consensus 233 ive~g~~~ 240 (327)
T PRK11308 233 CVEKGTKE 240 (327)
T ss_pred EEEECCHH
Confidence 99999764
No 46
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2e-49 Score=371.68 Aligned_cols=219 Identities=22% Similarity=0.319 Sum_probs=185.4
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+|+++||+++|++ +.+|+++||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|+++.... .. .+
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~-~~-~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM--ISPDRGKITVLGEPVPSRA-RL-AR 76 (303)
T ss_pred cEEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECcccH-HH-Hh
Confidence 47999999999964 5799999999999999999999999999999999998 6799999999999875432 22 23
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|++|++.+++.+++.+++...... .+ ....+...++.++++.+++. +..++.+.. |||||||||+||
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~-LSgG~~qrv~la 147 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRY----FG---MSTREIEAVIPSLLEFARLE-SKADVRVAL-LSGGMKRRLTLA 147 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHCCCh-hHhcCchhh-CCHHHHHHHHHH
Confidence 4588999999888889999887643211 11 11223334566788999986 556777764 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||+.+|++|||||||+|||+.+++.+++.|++++++|.|||++|||++++..+ ||++++|++|+++..|+++.
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL-CDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999977789999999999999887 69999999999999998653
No 47
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-50 Score=397.46 Aligned_cols=270 Identities=19% Similarity=0.261 Sum_probs=219.4
Q ss_pred hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCE
Q 020477 29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEV 107 (325)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~ 107 (325)
...+..+..+.+.......+.+|+.+.++..+..... +..........|+++||+|.|+.. +.++|+|+||+|++||+
T Consensus 418 g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~ 496 (716)
T KOG0058|consen 418 GSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEV 496 (716)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCE
Confidence 3556677777788888888899999998876665444 221111345689999999999863 35699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
+|||||||+||||++++|..+ |.|++|+|.+||+|+.+++...++ ..|++|-|+|.+|.. ++.||+.++.
T Consensus 497 vALVGPSGsGKSTiasLL~rf--Y~PtsG~IllDG~~i~~~~~~~lr-~~Ig~V~QEPvLFs~-sI~eNI~YG~------ 566 (716)
T KOG0058|consen 497 VALVGPSGSGKSTIASLLLRF--YDPTSGRILLDGVPISDINHKYLR-RKIGLVGQEPVLFSG-SIRENIAYGL------ 566 (716)
T ss_pred EEEECCCCCCHHHHHHHHHHh--cCCCCCeEEECCeehhhcCHHHHH-HHeeeeeccceeecc-cHHHHHhcCC------
Confidence 999999999999999999998 999999999999999999988766 458999999999875 7888876543
Q ss_pred cCCCCCChHHHH-----HhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFY-----AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
...+.++.. +.+++.+..+..+.+..-.+-+.+||||||||+||||||+++|.||||||.||+||.+++..+
T Consensus 567 ---~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV 643 (716)
T KOG0058|consen 567 ---DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV 643 (716)
T ss_pred ---CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH
Confidence 233334333 334556777766544443444457999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhC
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG 317 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~ 317 (325)
.+.|.++.++ +|||+|.|.+..++. +|+|+|+++|++++.|+. .+++++.
T Consensus 644 q~aL~~~~~~-rTVlvIAHRLSTV~~--Ad~Ivvi~~G~V~E~G~h--~eLl~~~ 693 (716)
T KOG0058|consen 644 QEALDRLMQG-RTVLVIAHRLSTVRH--ADQIVVIDKGRVVEMGTH--DELLSKP 693 (716)
T ss_pred HHHHHHhhcC-CeEEEEehhhhHhhh--ccEEEEEcCCeEEecccH--HHHhhCc
Confidence 9999998654 899999999988876 699999999999999954 5677776
No 48
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-49 Score=355.15 Aligned_cols=216 Identities=25% Similarity=0.356 Sum_probs=182.4
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++.... ... +..
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~-~~~-~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL--LKPTSGRATVAGHDVVREP-REV-RRR 74 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEecCcCh-HHH-hhc
Confidence 578999999964 5799999999999999999999999999999999998 6799999999999876432 222 235
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++|++.+++.+++.+++...... .+ ....+....+.++++.+++. +..++.+.+ |||||||||+||||
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qr~~la~a 145 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARL----YG---VPGAERRERIDELLDFVGLL-EAADRLVKT-YSGGMRRRLEIARS 145 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCH-HHhhCChhh-CCHHHHHHHHHHHH
Confidence 88999999888888998887654221 11 11223345677889999996 556777764 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+.+|++|||||||++||+.+++.+.+.|+++.++ |.|||++|||++++..+ +|++++|++|++++.|+++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 217 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQL-CDRVAIIDHGRIIAEGTPE 217 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEeCCEEEEeCChH
Confidence 99999999999999999999999999999999765 88999999999999887 6999999999999888754
No 49
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-50 Score=347.37 Aligned_cols=221 Identities=24% Similarity=0.366 Sum_probs=181.0
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCCC--
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEME-- 149 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~~-- 149 (325)
.+.++++||++.|+ ++.+|+|||++|++++++||+||||||||||||++..+...-| .+|+|.++|+++....
T Consensus 5 ~~~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 5 IPAIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred cceeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 46799999999997 4789999999999999999999999999999999999733222 4699999999997653
Q ss_pred HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020477 150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG 226 (325)
Q Consensus 150 ~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg 226 (325)
....+ ..++||||.|.-|| ++.++|+..+.... +.. ..+..+.++..|+...+-. +.+++... +|||
T Consensus 83 ~~~lR-r~vGMVFQkPnPFp-~SIydNVayG~r~~----g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~-~LSG 152 (253)
T COG1117 83 VVELR-RRVGMVFQKPNPFP-MSIYDNVAYGLRLH----GIK---DKELDEIVESSLKKAALWDEVKDRLHKSAL-GLSG 152 (253)
T ss_pred HHHHH-HHheeeccCCCCCC-chHHHHHHHhHHhh----ccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCCcc-CCCh
Confidence 33333 34889999999998 89999988775432 111 1333444555555554421 33444554 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||+||++|||||+.+|+|||||||||+|||.+...|.++|.+|+ +.-|||+|||++..+.++ .|+.+++..|++++.|
T Consensus 153 GQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRv-SD~taFf~~G~LvE~g 230 (253)
T COG1117 153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARV-SDYTAFFYLGELVEFG 230 (253)
T ss_pred hHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHH-hHhhhhhcccEEEEEc
Confidence 99999999999999999999999999999999999999999997 457999999999999998 6999999999999999
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+.+
T Consensus 231 ~T~ 233 (253)
T COG1117 231 PTD 233 (253)
T ss_pred CHH
Confidence 865
No 50
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-49 Score=379.54 Aligned_cols=217 Identities=24% Similarity=0.355 Sum_probs=188.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+... .
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl--~~p~~G~I~~~g~~i~~~~~~~---~ 75 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--EDITSGDLFIGEKRMNDVPPAE---R 75 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCCHhH---C
Confidence 5899999999964 5799999999999999999999999999999999998 6799999999999987655432 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+|+.+|+.+++.+..... + ....+...++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~----~---~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~-LSgGq~QRvaLAr 146 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLA----G---AKKEEINQRVNQVAEVLQLA-HLLDRKPKA-LSGGQRQRVAIGR 146 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhc----C---CCHHHHHHHHHHHHHHcCCh-hhhcCChhh-CCHHHHHHHHHHH
Confidence 5899999999999999999987653211 1 12233445678889999996 567787765 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+.+|++|||||||++||+.+++.+.+.|+++.++ |.|+|+||||++++..+ ||++++|++|++++.|+++.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~-~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL-ADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999998764 88999999999998887 69999999999999998653
No 51
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-49 Score=372.38 Aligned_cols=225 Identities=26% Similarity=0.325 Sum_probs=184.3
Q ss_pred cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC--CCCccEEEECCEeCCCCCHHH
Q 020477 77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY--EVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~--~p~~G~I~~~g~~i~~~~~~~ 152 (325)
+|+++||++.|+... ..+|+||||+|++||++||+|+||||||||+++|+|+... .|++|+|.++|+++..++...
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 699999999996422 3699999999999999999999999999999999998321 148999999999998777654
Q ss_pred Hhh---ccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCCCCCC
Q 020477 153 RSL---AGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVNEGFS 225 (325)
Q Consensus 153 ~~~---~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~LS 225 (325)
++. ..++|+||++. +.+.+++.+.+....... .+ ....+..+++.++++.+++.. ..+++.+.+ ||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~---~~---~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~-LS 155 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH---QG---GNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQ-LS 155 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHCCCCChHHHHhCCchh-CC
Confidence 322 35899999984 566677665544332111 01 123344566788999999953 345677765 99
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
|||+|||+|||||+.+|++||+||||++||+.++..++++|+++++ .|.|+|+||||++++..+ +|+|++|++|+|++
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~-adri~vm~~G~ive 234 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEA-AHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976 488999999999999887 69999999999999
Q ss_pred EcCcc
Q 020477 305 TGDAS 309 (325)
Q Consensus 305 ~g~~~ 309 (325)
.|+++
T Consensus 235 ~g~~~ 239 (326)
T PRK11022 235 TGKAH 239 (326)
T ss_pred ECCHH
Confidence 99764
No 52
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.7e-49 Score=352.59 Aligned_cols=216 Identities=27% Similarity=0.378 Sum_probs=181.3
Q ss_pred cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
+++++|++++|++.. .++|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++... ....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~-~~~~- 76 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL--LEPDAGFATVDGFDVVKE-PAEA- 76 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCCceEEECCEEcccC-HHHH-
Confidence 578999999997421 1699999999999999999999999999999999998 679999999999988643 2222
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..+++++|++.+++..++.+++...... .+ ....+...++.++++.+++. +..++.+.. ||||||||++|
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~l 147 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGL----YG---LKGDELTARLEELADRLGME-ELLDRRVGG-FSTGMRQKVAI 147 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCH-HHHhhhhhh-cCHHHHHHHHH
Confidence 24588999999888888999887654221 11 11233345677889999995 566777764 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||+||||++++..+ +|++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~-~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERL-CDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-cCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999976688999999999998877 6999999999998654
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-49 Score=355.94 Aligned_cols=221 Identities=23% Similarity=0.378 Sum_probs=185.0
Q ss_pred cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--
Q 020477 77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-- 152 (325)
Q Consensus 77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~-- 152 (325)
||+++|++++|++. .+++|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL--ERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcccCCHHHHH
Confidence 58899999999642 02799999999999999999999999999999999998 6799999999999987654332
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
..+..++|++|++.+++.+++.+++...... .+ ....+....+.++++.+++. +..++.+.. |||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv 149 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEI----AG---VPKAEIEERVLELLELVGLE-DKADAYPAQ-LSGGQKQRV 149 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHCCCh-hhhhcChhh-CCHHHHHHH
Confidence 1234688999999988888998887654321 11 11223344567889999996 556777664 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++..+ +|++++|++|++++.|+++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRI-CDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999999998765 88999999999998877 6999999999999998754
No 54
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-49 Score=363.82 Aligned_cols=226 Identities=27% Similarity=0.381 Sum_probs=187.0
Q ss_pred cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCHH
Q 020477 77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~~ 151 (325)
+|+++||++.|.... ..+++||||+|++||++||||+|||||||+.+.|+|+++.+ -.+|+|.|+|+++..++.+
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 478999999996432 46999999999999999999999999999999999984311 3679999999999998876
Q ss_pred HH---hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccc--cccccCCCCC
Q 020477 152 ER---SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD--FLNRNVNEGF 224 (325)
Q Consensus 152 ~~---~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~L 224 (325)
++ +...|+++||+|. +.|.+++.+.+........ .. ...++..+++.++|+.+++... .++.++++ |
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~---~~--~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe-l 154 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG---KG--LSKKEAKERAIELLELVGIPDPERRLKSYPHE-L 154 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh---cc--hhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc-c
Confidence 43 2346999999985 4455665554443332211 00 0234566788899999999743 56777765 9
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.|+|+||||+..+..+ ||||+||+.|+||
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~-aDri~VMYaG~iV 233 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEI-ADRVAVMYAGRIV 233 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999986 489999999999999998 6999999999999
Q ss_pred EEcCcc
Q 020477 304 KTGDAS 309 (325)
Q Consensus 304 ~~g~~~ 309 (325)
+.|+.+
T Consensus 234 E~g~~~ 239 (316)
T COG0444 234 EEGPVE 239 (316)
T ss_pred EeCCHH
Confidence 999875
No 55
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-49 Score=365.77 Aligned_cols=222 Identities=22% Similarity=0.311 Sum_probs=182.8
Q ss_pred cEEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC---H
Q 020477 77 LLQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME---P 150 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~---~ 150 (325)
||+++||+++|+... +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|+++|.++.... .
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL--LQPTEGKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC--CCCCCcEEEECCEECcccccccc
Confidence 589999999996321 2599999999999999999999999999999999998 6899999999999985321 1
Q ss_pred HHHhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020477 151 EERSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE 228 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq 228 (325)
....+..++++||++ .++. .++.+++.+.... .+ ....+...++.++++.+++..++.++.+. .|||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-~LSgGq 149 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQN----FG---IPKEKAEKIAAEKLEMVGLADEFWEKSPF-ELSGGQ 149 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHcCCChhhccCCcc-cCCHHH
Confidence 112234689999987 4554 5888887644211 11 12334445677889999995446677776 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||+|++|++|++++.|++
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~-~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADY-ADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999976789999999999998877 699999999999999987
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 229 ~~ 230 (288)
T PRK13643 229 SD 230 (288)
T ss_pred HH
Confidence 53
No 56
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1e-48 Score=397.26 Aligned_cols=272 Identities=21% Similarity=0.257 Sum_probs=209.3
Q ss_pred hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEE
Q 020477 29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH 108 (325)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~ 108 (325)
..|+..+......++.+..+.+|+.++++.++.................++++||++.|.+ ++++|+|+||+|++||++
T Consensus 301 ~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~-~~~vL~~i~l~i~~G~~v 379 (588)
T PRK11174 301 YQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD-GKTLAGPLNFTLPAGQRI 379 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC-CCeeeeeeEEEEcCCCEE
Confidence 3566667777778889999999999988755432111110001012235999999987754 367999999999999999
Q ss_pred EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020477 109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL 188 (325)
Q Consensus 109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
||+|+||||||||+++|+|+ + |++|+|.++|.++..++...+++ .+++++|+|.+|.+ |..+|+.++
T Consensus 380 aIvG~SGsGKSTL~~lL~g~--~-p~~G~I~i~g~~i~~~~~~~lr~-~i~~v~Q~~~LF~~-TI~eNI~~g-------- 446 (588)
T PRK11174 380 ALVGPSGAGKTSLLNALLGF--L-PYQGSLKINGIELRELDPESWRK-HLSWVGQNPQLPHG-TLRDNVLLG-------- 446 (588)
T ss_pred EEECCCCCCHHHHHHHHhcC--C-CCCcEEEECCEecccCCHHHHHh-heEEecCCCcCCCc-CHHHHhhcC--------
Confidence 99999999999999999998 7 89999999999999998876654 58999999999876 888887553
Q ss_pred CCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH
Q 020477 189 GQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263 (325)
Q Consensus 189 ~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~ 263 (325)
.++.++++..+ .+.+.++.+..+.+..-..-+.+||||||||++|||||+++|+|||||||||+||.++++.+.
T Consensus 447 -~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~ 525 (588)
T PRK11174 447 -NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525 (588)
T ss_pred -CCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 22233333332 233445555332222222223469999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 264 ~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
+.|.++. +++|+|+|||+++.+.. +|+|++|++|++++.|+.+ ++++.++.|
T Consensus 526 ~~l~~~~-~~~TvIiItHrl~~i~~--aD~Iivl~~G~i~e~G~~~--eL~~~~~~y 577 (588)
T PRK11174 526 QALNAAS-RRQTTLMVTHQLEDLAQ--WDQIWVMQDGQIVQQGDYA--ELSQAGGLF 577 (588)
T ss_pred HHHHHHh-CCCEEEEEecChHHHHh--CCEEEEEeCCeEeecCCHH--HHHhcchHH
Confidence 9999985 46899999999988765 6999999999999999754 566666643
No 57
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.5e-49 Score=362.74 Aligned_cols=222 Identities=23% Similarity=0.343 Sum_probs=186.2
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-- 152 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~-- 152 (325)
+++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+...
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~ 80 (269)
T PRK11831 5 ANLVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ--IAPDHGEILFDGENIPAMSRSRLY 80 (269)
T ss_pred cceEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEccccChhhHH
Confidence 458999999999963 5799999999999999999999999999999999998 6799999999999887654322
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
..+..++++||++.+++.+++.+++....... . .....+....+.+.++.+++. +..++.+.+ |||||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~----~--~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LSgGq~qrv 152 (269)
T PRK11831 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREH----T--QLPAPLLHSTVMMKLEAVGLR-GAAKLMPSE-LSGGMARRA 152 (269)
T ss_pred HHhhcEEEEecccccCCCCCHHHHHHHHHHHc----c--CCCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHHH
Confidence 11235889999998888889988876543211 0 011223334567788999996 566777764 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|||||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||+||||++++..+ ||++++|++|++++.|+++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~-~d~v~~l~~G~i~~~g~~~ 229 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSI-ADHAYIVADKKIVAHGSAQ 229 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh-hCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999998754 78999999999999887 6999999999999998764
No 58
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=7.1e-49 Score=357.35 Aligned_cols=241 Identities=53% Similarity=0.876 Sum_probs=187.7
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+..++|++|+|.++|+++...+...+.+.
T Consensus 1 ~i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 1 MLSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred CeEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 5899999999974 57999999999999999999999999999999999973235899999999998876655444445
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
++++++|++.+++..++..+....................+....+.+.++.+++..+..++.+...|||||||||+|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 68899999887776665555433221100000000011122334566778888885445555553259999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHh
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE 316 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~ 316 (325)
||+.+|++|||||||++||+.+++.+.+.|+++++.++|||++|||++++...++|++++|++|++++.|+++..+..+.
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~ 238 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEE 238 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHHHHHHh
Confidence 99999999999999999999999999999999876688999999999988775469999999999999998876555554
Q ss_pred CCe
Q 020477 317 GGY 319 (325)
Q Consensus 317 ~~~ 319 (325)
.++
T Consensus 239 ~~~ 241 (248)
T PRK09580 239 QGY 241 (248)
T ss_pred cCC
Confidence 444
No 59
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.1e-49 Score=353.88 Aligned_cols=218 Identities=21% Similarity=0.322 Sum_probs=179.7
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-----CCCccEEEECCEeCCCCCH-H
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-----EVTEGSVVFKGENLLEMEP-E 151 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-----~p~~G~I~~~g~~i~~~~~-~ 151 (325)
|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ + +|++|+|.++|+++...+. .
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~~~~~~~~~ 76 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL--NDLIPGAPDEGEVLLDGKDIYDLDVDV 76 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--cccccCCCCCeEEEECCEEhhhcchHH
Confidence 578999999964 5799999999999999999999999999999999998 5 7899999999999866542 1
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC-CCCCChHHHH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV-NEGFSGGERK 230 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LSgGqrQ 230 (325)
...+..++|++|++.++ ..++.+++....... +.. ...+...++.++++.+++. +..++.+ ..+|||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~q 148 (227)
T cd03260 77 LELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLH----GIK--LKEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQ 148 (227)
T ss_pred HHHHhhEEEEecCchhc-cccHHHHHHhHHHhc----CCC--cHHHHHHHHHHHHHHcCCC-hHHhccCCcccCCHHHHH
Confidence 12234588999999887 789988876543211 110 1112335567788999996 4445553 2359999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ .|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARV-ADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHh-CCEEEEEeCCEEEEecCcc
Confidence 999999999999999999999999999999999999999776 8999999999998877 6999999999999998764
No 60
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-49 Score=363.14 Aligned_cols=220 Identities=24% Similarity=0.330 Sum_probs=185.0
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++++++||+++|++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+...++
T Consensus 3 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~- 78 (274)
T PRK13647 3 NIIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI--YLPQRGRVKVMGREVNAENEKWVR- 78 (274)
T ss_pred ceEEEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCceEEEECCEECCCCCHHHHH-
Confidence 47999999999963 35699999999999999999999999999999999998 679999999999998765544432
Q ss_pred ccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 156 AGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 156 ~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..++|+||++. .+...++.+++.+.... .+ ....+...++.++++.+++. +..++.+.+ |||||||||+|
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~-LSgG~~qrv~l 149 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVN----MG---LDKDEVERRVEEALKAVRMW-DFRDKPPYH-LSYGQKKRVAI 149 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHH----cC---CCHHHHHHHHHHHHHHCCCH-HHhcCChhh-CCHHHHHHHHH
Confidence 35899999973 34456888887643211 11 12233345677889999996 567777765 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||||+.+|++|||||||++||+.++..++++|++++++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEW-ADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999976689999999999998877 7999999999999999864
No 61
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.2e-49 Score=353.76 Aligned_cols=216 Identities=28% Similarity=0.404 Sum_probs=180.1
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.....+..
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--LPPRSGSIRFDGRDITGLPPHERARAG 76 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcCCCCHHHHHhcC
Confidence 578999999964 5799999999999999999999999999999999998 679999999999998766554433346
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc-CCccccccccCCCCCChHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL-SMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
++|+||++.+++.+++.+++....... . ..+....+.++++.+ ++. +..++.+.+ ||||||||++|||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~----~-----~~~~~~~~~~~l~~~~~l~-~~~~~~~~~-LS~G~~qrv~lar 145 (222)
T cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYAR----R-----RAKRKARLERVYELFPRLK-ERRKQLAGT-LSGGEQQMLAIAR 145 (222)
T ss_pred eEEeccccccCCCCcHHHHHHHHhhhc----C-----chhHHHHHHHHHHHHHhhh-hhhhCchhh-CCHHHHHHHHHHH
Confidence 889999999888889988876543211 1 011223445566666 353 445666654 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+.+|++|||||||+|||+.+++.+++.|+++++++.|||++|||++++..+ ||++++|++|++++.|+.+
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 217 (222)
T cd03224 146 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI-ADRAYVLERGRVVLEGTAA 217 (222)
T ss_pred HHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-ccEEEEeeCCeEEEeCCHH
Confidence 99999999999999999999999999999999876688999999999998887 6999999999999988654
No 62
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-49 Score=357.23 Aligned_cols=220 Identities=20% Similarity=0.314 Sum_probs=183.2
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+++++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.. +.
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~---~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL--ERPDSGTILFGGEDATDVPVQ---ER 74 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCCcc---cc
Confidence 4899999999964 5799999999999999999999999999999999998 679999999999987654321 23
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|++|++.+++..++.+++......... .. .....+....+.++++.+++. +..++.+.+ |||||||||+|||
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~la~ 149 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPR-SE--RPPEAEIRAKVHELLKLVQLD-WLADRYPAQ-LSGGQRQRVALAR 149 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccc-cc--cCCHHHHHHHHHHHHHHcCCh-hhhhcChhh-CCHHHHHHHHHHH
Confidence 588999999888888998887654321100 00 001222334567789999985 556777764 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+.+|++|||||||+|||+.+++.+.++|++++++ |+|||++|||++.+..+ ||++++|++|++++.|+++
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEV-ADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999764 78999999999988877 6999999999999998765
No 63
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.1e-49 Score=353.05 Aligned_cols=212 Identities=27% Similarity=0.379 Sum_probs=176.5
Q ss_pred EEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH---
Q 020477 78 LQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--- 152 (325)
Q Consensus 78 l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--- 152 (325)
|+++||+++|++.. +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL--DRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC--cCCCceeEEECCEehhhcchhHHHH
Confidence 47899999996421 5799999999999999999999999999999999998 6799999999999887654322
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
..+..++|++|++.+++.+++.+++....... + ....+....+.++++.+++. +..++.+.+ |||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv 149 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLA----G---VPKKERRERAEELLERVGLG-DRLNHYPSE-LSGGQQQRV 149 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhc----C---CCHHHHHHHHHHHHHHcCCc-hhhhcChhh-cCHHHHHHH
Confidence 12345889999999888889988876643211 1 11122334577889999996 456777764 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
+|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +|+|||+||||++++. + ||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~-~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-Y-ADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-h-hcEEEEeeCCcC
Confidence 999999999999999999999999999999999999976 4889999999999886 5 799999999974
No 64
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-48 Score=368.99 Aligned_cols=224 Identities=21% Similarity=0.304 Sum_probs=184.1
Q ss_pred CCCcEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC--
Q 020477 74 SQPLLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM-- 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~-- 148 (325)
..++|+++||+++|++. ++++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl--~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL--IKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCEEcccccc
Confidence 34689999999999642 13699999999999999999999999999999999998 789999999999987542
Q ss_pred -------------CHHHHhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc
Q 020477 149 -------------EPEERSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT 213 (325)
Q Consensus 149 -------------~~~~~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 213 (325)
......+..++++||++ .+++ .++.+++.+.... . .....+...++.++++.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~----~---~~~~~~~~~~~~~~l~~~gL~~ 167 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVA----L---GVKKSEAKKLAKFYLNKMGLDD 167 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHh----c---CCCHHHHHHHHHHHHHHcCCCh
Confidence 11112234588999997 3554 4888887543211 1 1123344456778899999953
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020477 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF 293 (325)
Q Consensus 214 ~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~ 293 (325)
.+.++.+. +|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|.++.++|.|||+||||++++..+ ||+
T Consensus 168 ~~~~~~~~-~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~-adr 245 (320)
T PRK13631 168 SYLERSPF-GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEV-ADE 245 (320)
T ss_pred hHhcCCcc-cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCE
Confidence 46677776 4999999999999999999999999999999999999999999999876789999999999988776 699
Q ss_pred EEEEeCCEEEEEcCcc
Q 020477 294 IHIMEDGRIIKTGDAS 309 (325)
Q Consensus 294 i~vl~~G~iv~~g~~~ 309 (325)
|++|++|++++.|+++
T Consensus 246 i~vl~~G~i~~~g~~~ 261 (320)
T PRK13631 246 VIVMDKGKILKTGTPY 261 (320)
T ss_pred EEEEECCEEEEeCCHH
Confidence 9999999999999875
No 65
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5.1e-49 Score=350.48 Aligned_cols=212 Identities=22% Similarity=0.341 Sum_probs=179.5
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.. ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~v~~~g~~~~~~~~~---~~~ 73 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL--EEPTSGRIYIGGRDVTDLPPK---DRD 73 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCCcc---cce
Confidence 478999999964 5799999999999999999999999999999999998 679999999999998654332 135
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++..++.+++...... .+ ....+...++.++++.+++. +..++.+.+ ||||||||++||||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qr~~lara 144 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKL----RK---VPKDEIDERVREVAELLQIE-HLLDRKPKQ-LSGGQRQRVALGRA 144 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCH-HHHhCChhh-CCHHHHHHHHHHHH
Confidence 88999999888888998887654221 11 11233345567788999996 566777764 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++|||++++..+ +|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~-~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTM-ADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCeEEEEECCEEEecC
Confidence 99999999999999999999999999999998754 88999999999998877 6999999999998765
No 66
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=9.5e-49 Score=370.64 Aligned_cols=226 Identities=25% Similarity=0.346 Sum_probs=187.0
Q ss_pred CCCcEEEEEEEEEECC--CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC---ccEEEECCEeCCCC
Q 020477 74 SQPLLQVTGLTAVIAE--SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT---EGSVVFKGENLLEM 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~--~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~---~G~I~~~g~~i~~~ 148 (325)
..++|+++||++.|+. +...+|+|+||+|++||++||+|+||||||||+++|+|+ ++|+ +|+|.|+|+++..+
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl--~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL--LAANGRIGGSATFNGREILNL 86 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC--CCCCCCCCeEEEECCEECCcC
Confidence 4568999999999953 224699999999999999999999999999999999998 5564 99999999999887
Q ss_pred CHHHHh---hccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCC
Q 020477 149 EPEERS---LAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVN 221 (325)
Q Consensus 149 ~~~~~~---~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~ 221 (325)
+...++ ...++|+||++ .+++.+++.+++....... . .....+...++.++++.+++.. +..++.+.
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~----~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~ 160 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH----K--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPH 160 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh----c--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence 765432 24699999998 4677788777665432211 0 1123444566788899999853 23455665
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
+|||||+|||+|||||+.+|++||+||||++||+.++..++++|++++++ |.|+|+||||++.+..+ +|+|++|++|
T Consensus 161 -~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~-~Dri~vm~~G 238 (330)
T PRK09473 161 -EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGI-CDKVLVMYAG 238 (330)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHh-CCEEEEEECC
Confidence 49999999999999999999999999999999999999999999999765 88999999999999887 6999999999
Q ss_pred EEEEEcCcc
Q 020477 301 RIIKTGDAS 309 (325)
Q Consensus 301 ~iv~~g~~~ 309 (325)
+|++.|+++
T Consensus 239 ~ive~g~~~ 247 (330)
T PRK09473 239 RTMEYGNAR 247 (330)
T ss_pred EEEEECCHH
Confidence 999999865
No 67
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-49 Score=358.46 Aligned_cols=229 Identities=25% Similarity=0.390 Sum_probs=188.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+...+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~ 78 (255)
T PRK11300 3 QPLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTILLRGQHIEGLPGHQIA 78 (255)
T ss_pred CceEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC--cCCCcceEEECCEECCCCCHHHHH
Confidence 348999999999963 6799999999999999999999999999999999998 689999999999998776654444
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHh------hhcCCC--CCChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARR------RKLGQP--EIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG 226 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 226 (325)
+.+++|+||++.+++.+++.+++........ ...... .....+....+.++++.+++. +..++.+.+ |||
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~ 156 (255)
T PRK11300 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGN-LAY 156 (255)
T ss_pred hcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhh-CCH
Confidence 4568899999999998999998876421100 000000 001112234566778899985 566777764 999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
|||||++|||||+.+|++|||||||+|||+.+++.+.++|.+++++ |.|||++|||++++..+ ||++++|++|++++.
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGI-SDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHh-CCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999765 88999999999999887 699999999999999
Q ss_pred cCccH
Q 020477 306 GDASI 310 (325)
Q Consensus 306 g~~~~ 310 (325)
|+++.
T Consensus 236 ~~~~~ 240 (255)
T PRK11300 236 GTPEE 240 (255)
T ss_pred CCHHH
Confidence 88653
No 68
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6.5e-49 Score=350.04 Aligned_cols=212 Identities=21% Similarity=0.311 Sum_probs=177.9
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~ 154 (325)
||+++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+... ..
T Consensus 1 ~l~~~~l~~~~~~-~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (214)
T TIGR02673 1 MIEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA--LTPSRGQVRIAGEDVNRLRGRQLPLL 77 (214)
T ss_pred CEEEEeeeEEeCC-CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcccCCHHHHHHH
Confidence 5899999999952 35799999999999999999999999999999999998 6789999999999987655332 12
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..++|++|++.+++..++.+++...... .+ .........+.++++.+++. +..++.+.+ |||||||||+|
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~l 148 (214)
T TIGR02673 78 RRRIGVVFQDFRLLPDRTVYENVALPLEV----RG---KKEREIQRRVGAALRQVGLE-HKADAFPEQ-LSGGEQQRVAI 148 (214)
T ss_pred HhheEEEecChhhccCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHHHHH
Confidence 34588999999888888998887654321 11 11222335677889999996 456667654 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++++..+ ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~-~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRV-AHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCEEEEecCCC
Confidence 9999999999999999999999999999999999876688999999999999887 69999999885
No 69
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.3e-50 Score=338.22 Aligned_cols=214 Identities=25% Similarity=0.349 Sum_probs=186.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
|+.+++|+++|+. .==.++++|+.||++||+||||||||||+++|+|+ ..|.+|+|+++|++....++.+|-
T Consensus 1 ~l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF--~~P~~G~i~i~g~d~t~~~P~~RP-- 72 (231)
T COG3840 1 MLALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGF--ETPASGEILINGVDHTASPPAERP-- 72 (231)
T ss_pred CccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhc--cCCCCceEEEcCeecCcCCcccCC--
Confidence 4678999999963 33468899999999999999999999999999998 679999999999999887776553
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
+.++||+..+|..+++.+|+..+..+.. . . ..+.+++++.++.++|+. .+.+|.+.+ |||||||||+|||
T Consensus 73 -VSmlFQEnNLFaHLtV~qNigLGl~P~L---k---L-~a~~r~~v~~aa~~vGl~-~~~~RLP~~-LSGGqRQRvALAR 142 (231)
T COG3840 73 -VSMLFQENNLFAHLTVAQNIGLGLSPGL---K---L-NAEQREKVEAAAAQVGLA-GFLKRLPGE-LSGGQRQRVALAR 142 (231)
T ss_pred -hhhhhhccccchhhhhhhhhcccCCccc---c---c-CHHHHHHHHHHHHHhChh-hHhhhCccc-cCchHHHHHHHHH
Confidence 6788999999999999999877654321 1 1 233456788889999996 678888875 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|+++-+||+||||+|+|||.-+.+++.++.++..+ +.|++||||.++.+..+ +++++++++|+|.+.|+.+
T Consensus 143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~i-a~~~~fl~~Gri~~~g~~~ 215 (231)
T COG3840 143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARI-ADRVVFLDNGRIAAQGSTQ 215 (231)
T ss_pred HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHh-hhceEEEeCCEEEeeccHH
Confidence 999999999999999999999999999999999855 88999999999999998 6999999999999999764
No 70
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6.6e-49 Score=351.45 Aligned_cols=217 Identities=24% Similarity=0.303 Sum_probs=181.2
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++||++.|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.... ... ...
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~-~~~-~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE--LRPTSGTAYINGYSIRTDR-KAA-RQS 76 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccch-HHH-hhh
Confidence 578999999964225799999999999999999999999999999999998 6799999999999886532 222 235
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++..++.+++...... .+. ...+...++.++++.+++. +..++.+.+ ||||||||++||||
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~----~~~---~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~a 147 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARL----KGL---PKSEIKEEVELLLRVLGLT-DKANKRART-LSGGMKRKLSLAIA 147 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHH----cCC---CHHHHHHHHHHHHHHcCCH-HHHhChhhh-CCHHHHHHHHHHHH
Confidence 88999999888888988887653221 111 1222334567788999995 556676664 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+.+|++|||||||++||+.+++.+.+.|+++++ +.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~-~d~i~~l~~g~i~~~~~~~ 217 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEAL-CDRIAIMSDGKLRCIGSPQ 217 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHh-cCEEEEEECCEEEecCCHH
Confidence 9999999999999999999999999999999876 48999999999998876 6999999999999988764
No 71
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-48 Score=355.10 Aligned_cols=227 Identities=24% Similarity=0.372 Sum_probs=187.2
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+...+.+
T Consensus 1 ~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 1 PILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK--TRPDEGSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred CeEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCeecCCCCHHHHHh
Confidence 37899999999964 5799999999999999999999999999999999998 6799999999999887665544334
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC-CCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG-QPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
.++++++|++.+++.+++.+++............ .......+...++.++++.+++. +..++.+.. |||||+|||+|
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~Ge~qrv~l 154 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGL-LSHGQKQWLEI 154 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHH
Confidence 5689999999999989999987654321100000 00001122345577889999996 556777764 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 155 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~-~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 155 GMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSI-ADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHh-CCEEEEEECCeEEeeCCHHH
Confidence 9999999999999999999999999999999999865 68999999999999887 69999999999999987653
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.5e-49 Score=358.37 Aligned_cols=228 Identities=23% Similarity=0.284 Sum_probs=184.5
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~ 154 (325)
|++++||+++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+... ..
T Consensus 1 ~l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR02315 1 MLEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL--VEPSSGSILLEGTDITKLRGKKLRKL 77 (243)
T ss_pred CeEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCccEEEECCEEhhhCCHHHHHHH
Confidence 5789999999962 35799999999999999999999999999999999998 6799999999999887654322 12
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhc-CCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL-GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
+..+++++|++.+++.+++.+++........... ........+...++.++++.+++. +..++.+.+ |||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~ 155 (243)
T TIGR02315 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQ-LSGGQQQRVA 155 (243)
T ss_pred HhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCccc-CCHHHHHHHH
Confidence 3458899999988888899888754321100000 000001122335577789999985 556777764 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |+|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~-~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKY-ADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCeEEEEECCEEEecCCHHH
Confidence 999999999999999999999999999999999998654 78999999999998877 69999999999999887653
No 73
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-49 Score=366.93 Aligned_cols=222 Identities=20% Similarity=0.301 Sum_probs=182.6
Q ss_pred cEEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC-----
Q 020477 77 LLQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM----- 148 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~----- 148 (325)
+|+++||+++|++.. ..+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--LLPDTGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEEeceeccccccccc
Confidence 489999999996422 2599999999999999999999999999999999998 679999999998765311
Q ss_pred -------------------CHHHHhhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHh
Q 020477 149 -------------------EPEERSLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208 (325)
Q Consensus 149 -------------------~~~~~~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (325)
....+ +..++|+||++. .+...++.+++.+.... .+ ....+...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~----~~---~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEI-RRRVGVVFQFAEYQLFEQTIEKDIIFGPVS----MG---VSKEEAKKRAAKYIEL 151 (305)
T ss_pred ccccccccccccccccccchHHHH-HhceEEEeeCcccccccccHHHHHHhhHHH----cC---CCHHHHHHHHHHHHHH
Confidence 11222 346899999862 23346888887654221 11 2234445667889999
Q ss_pred cCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020477 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF 288 (325)
Q Consensus 209 ~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~ 288 (325)
+++..++.++.+.. |||||||||+|||||+.+|++|||||||++||+.+++.+++.|++++++|.|||+||||++++..
T Consensus 152 ~gL~~~~~~~~~~~-LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 152 VGLDESYLQRSPFE-LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred cCCChhhhhCChhh-CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 99964567777765 99999999999999999999999999999999999999999999997668999999999999887
Q ss_pred hCCcEEEEEeCCEEEEEcCccH
Q 020477 289 IKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 289 ~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+ ||+|++|++|++++.|+++.
T Consensus 231 ~-adrv~vl~~G~i~~~g~~~~ 251 (305)
T PRK13651 231 W-TKRTIFFKDGKIIKDGDTYD 251 (305)
T ss_pred h-CCEEEEEECCEEEEECCHHH
Confidence 7 69999999999999998753
No 74
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-48 Score=363.04 Aligned_cols=222 Identities=18% Similarity=0.300 Sum_probs=183.1
Q ss_pred cEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC---H
Q 020477 77 LLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME---P 150 (325)
Q Consensus 77 ~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~---~ 150 (325)
+|+++||+++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++.... .
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL--LKPSSGTITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECccccccch
Confidence 58899999999632 14699999999999999999999999999999999998 6899999999999885421 1
Q ss_pred HHHhhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020477 151 EERSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE 228 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq 228 (325)
....+..++|++|++. ++ ..++.+++.+.... .. ....+...++.++++.+++..+..++.+.. |||||
T Consensus 80 ~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-LSgGq 150 (287)
T PRK13641 80 LKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKN----FG---FSEDEAKEKALKWLKKVGLSEDLISKSPFE-LSGGQ 150 (287)
T ss_pred HHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCChhHhhCCccc-CCHHH
Confidence 1222346899999973 44 46888887643211 11 123334456778899999953456777765 99999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||++++|++|++++.|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~-~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEY-ADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976789999999999999887 699999999999999986
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 230 ~~ 231 (287)
T PRK13641 230 KE 231 (287)
T ss_pred HH
Confidence 53
No 75
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-49 Score=354.82 Aligned_cols=219 Identities=18% Similarity=0.255 Sum_probs=182.2
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++++++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.....+
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (237)
T PRK11614 4 VMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD--PRATSGRIVFDGKDITDWQTAKIMR 79 (237)
T ss_pred cEEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCceEEECCEecCCCCHHHHHH
Confidence 58999999999963 5799999999999999999999999999999999998 6799999999999987765543334
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc-CCccccccccCCCCCChHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL-SMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..+++++|++.+++..++.+++...... . ...+....+.++++.+ ++. +..++.+. .||||||||++|
T Consensus 80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----~----~~~~~~~~~~~~l~~~~~l~-~~~~~~~~-~LS~G~~qrl~l 148 (237)
T PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGGFF-----A----ERDQFQERIKWVYELFPRLH-ERRIQRAG-TMSGGEQQMLAI 148 (237)
T ss_pred hCEEEeccCcccCCCCcHHHHHHHhhhc-----c----ChhHHHHHHHHHHHHHHHHH-HHHhCchh-hCCHHHHHHHHH
Confidence 4688999999888888998887653210 0 0111223345556666 343 34556665 499999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKL-ADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhh-CCEEEEEeCCEEEeeCCHHH
Confidence 9999999999999999999999999999999999876789999999999988887 69999999999999998753
No 76
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-48 Score=363.19 Aligned_cols=223 Identities=21% Similarity=0.357 Sum_probs=183.4
Q ss_pred cEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH-H
Q 020477 77 LLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE-E 152 (325)
Q Consensus 77 ~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~-~ 152 (325)
.|+++||+++|+.. .+.+|+||||+|++||++||+|+||||||||+++|+|+ .+|++|+|.++|+++...+.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL--LKPTSGKIIIDGVDITDKKVKLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEECCEECCCcCccHH
Confidence 38999999999642 14699999999999999999999999999999999998 689999999999998764311 1
Q ss_pred HhhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-ccccccCCCCCChHHHH
Q 020477 153 RSLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERK 230 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQ 230 (325)
..+..++|+||++. .+...++.+++.+.... .+ ....+...++.++++.+++.. +..++.+.. |||||||
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-LSgGq~q 151 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN----LG---LSEEEIENRVKRAMNIVGLDYEDYKDKSPFE-LSGGQKR 151 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHHhHHHH----CC---CCHHHHHHHHHHHHHHcCCCchhhccCCccc-CCHHHHH
Confidence 12246889999974 22346888887643211 11 223444566788899999952 456777764 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|++|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||+||||++++..+ ||+|++|++|++++.|+++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~-~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKL-ADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999765 89999999999998877 6999999999999999765
Q ss_pred H
Q 020477 310 I 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 231 ~ 231 (287)
T PRK13637 231 E 231 (287)
T ss_pred H
Confidence 3
No 77
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-48 Score=354.28 Aligned_cols=220 Identities=21% Similarity=0.333 Sum_probs=184.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH-HHhh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE-ERSL 155 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~-~~~~ 155 (325)
+++++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...... ...+
T Consensus 1 ~l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (240)
T PRK09493 1 MIEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL--EEITSGDLIVDGLKVNDPKVDERLIR 76 (240)
T ss_pred CEEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCChhHHHHh
Confidence 5889999999963 5799999999999999999999999999999999998 679999999999998653321 1223
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|++|++.+++..++.+++.+..... .+ ....+....+.++++.+++. +..++.+. .||||||||++||
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LS~G~~qrv~la 148 (240)
T PRK09493 77 QEAGMVFQQFYLFPHLTALENVMFGPLRV---RG---ASKEEAEKQARELLAKVGLA-ERAHHYPS-ELSGGQQQRVAIA 148 (240)
T ss_pred hceEEEecccccCCCCcHHHHHHhHHHHh---cC---CCHHHHHHHHHHHHHHcCCh-HHHhcChh-hcCHHHHHHHHHH
Confidence 45889999998888889988875432110 01 11233345577889999996 45677776 4999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+.+|++|||||||+|||+.+++.+.++|++++++|+|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~ 221 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV-ASRLIFIDKGRIAEDGDPQ 221 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEeeCCHH
Confidence 999999999999999999999999999999999876688999999999999877 6999999999999998765
No 78
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-48 Score=363.72 Aligned_cols=220 Identities=20% Similarity=0.255 Sum_probs=181.5
Q ss_pred EEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC---HH
Q 020477 78 LQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME---PE 151 (325)
Q Consensus 78 l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~---~~ 151 (325)
++++||+++|++. .+++|+|+||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++.... ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL--LQPTSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECccccccchH
Confidence 8999999999642 14699999999999999999999999999999999998 6799999999999985321 11
Q ss_pred HHhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 152 ERSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
...+..++|+||++ .++ ..++.+++.+.... .+ ....+...++.++++.+++.....++.+.. ||||||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-LSgGq~ 151 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMN----FG---VSEEDAKQKAREMIELVGLPEELLARSPFE-LSGGQM 151 (290)
T ss_pred HHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHCCCChhhhhCCccc-CCHHHH
Confidence 12224588999997 344 46888887654211 11 123344456788899999954556777764 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||+|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|||+||||++++..+ ||+|++|++|++++.|++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~-~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARY-ADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999754 89999999999999887 699999999999999976
Q ss_pred c
Q 020477 309 S 309 (325)
Q Consensus 309 ~ 309 (325)
+
T Consensus 231 ~ 231 (290)
T PRK13634 231 R 231 (290)
T ss_pred H
Confidence 5
No 79
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.6e-48 Score=400.75 Aligned_cols=270 Identities=22% Similarity=0.280 Sum_probs=210.4
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.+++.... ..........++++||+|+|++.++++|+|+||+|++||.
T Consensus 404 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~ 481 (686)
T TIGR03797 404 FSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA--KTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEF 481 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--cCCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCE
Confidence 45677888888889999999999999988754432211 1111112346999999999975457899999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
+||+|+||||||||+|+|+|+ ++|++|+|.+||+++..++....++ .+++++|++.+|++ |..+|+...
T Consensus 482 vaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~-~i~~v~Q~~~lf~g-TI~eNi~~~------- 550 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGF--ETPESGSVFYDGQDLAGLDVQAVRR-QLGVVLQNGRLMSG-SIFENIAGG------- 550 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEEcCcCCHHHHHh-ccEEEccCCccCcc-cHHHHHhcC-------
Confidence 999999999999999999998 8899999999999999988776553 48999999999875 788887543
Q ss_pred cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
.+ .+.++.++. +.+.++.+..+.+..-..-+.+||||||||++|||||+++|++||||||||+||+.+++.+
T Consensus 551 --~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i 627 (686)
T TIGR03797 551 --AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV 627 (686)
T ss_pred --CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 11 222222211 2233333332222211222346999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
.+.|+++ ++|+|+|||+++.+.. +|+|++|++|++++.|+.+ ++++.+++|
T Consensus 628 ~~~L~~~---~~T~IiItHr~~~i~~--~D~Iivl~~G~iv~~G~~~--~Ll~~~~~y 678 (686)
T TIGR03797 628 SESLERL---KVTRIVIAHRLSTIRN--ADRIYVLDAGRVVQQGTYD--ELMAREGLF 678 (686)
T ss_pred HHHHHHh---CCeEEEEecChHHHHc--CCEEEEEECCEEEEECCHH--HHHhCCcHH
Confidence 9999886 4699999999988865 6999999999999999764 566666654
No 80
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-48 Score=350.31 Aligned_cols=214 Identities=24% Similarity=0.347 Sum_probs=179.2
Q ss_pred EEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 78 LQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 78 l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~------~ 72 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL--ERPTSGEVLVDGEPVTGP------G 72 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECccc------c
Confidence 47899999996311 4699999999999999999999999999999999998 678999999999987532 2
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..+++++|++.+++..++.+++....... + .........+.++++.+++. +..++.+.. ||||||||++||
T Consensus 73 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrl~la 143 (220)
T cd03293 73 PDRGYVFQQDALLPWLTVLDNVALGLELQ----G---VPKAEARERAEELLELVGLS-GFENAYPHQ-LSGGMRQRVALA 143 (220)
T ss_pred CcEEEEecccccccCCCHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHcCCh-hhhhCCccc-CCHHHHHHHHHH
Confidence 35889999998888889988876543211 1 11222335577889999996 556777764 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEe--CCEEEEEcCcc
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIME--DGRIIKTGDAS 309 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~--~G~iv~~g~~~ 309 (325)
|||+.+|++|||||||+|||+.+++.+.++|+++.+ .|.|||++|||++++..+ ||++++|+ +|++++.++.+
T Consensus 144 ~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 144 RALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFL-ADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh-CCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999999999864 478999999999988877 69999999 79999887653
No 81
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.1e-48 Score=351.51 Aligned_cols=220 Identities=28% Similarity=0.428 Sum_probs=177.2
Q ss_pred cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH--H
Q 020477 77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE--E 152 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~--~ 152 (325)
+|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL--LKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEccccchhhHH
Confidence 578999999996421 2699999999999999999999999999999999998 679999999999998765531 1
Q ss_pred HhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHh-HHHHHHhcCCccccccccCCCCCChHHH
Q 020477 153 RSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY-LYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 153 ~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
..+..++|++|++ .+++.+++.+++....... .. . ...+.... +.+.++.+++.....++.+.+ ||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~----~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LS~G~~ 151 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH----GK-L-SKKEARKEAVLLLLVGVGLPEEVLNRYPHE-LSGGQR 151 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhc----cC-C-cHHHHHHHHHHHHHHHCCCChhHhhCCchh-cCHHHH
Confidence 2234688999998 4556788888876542211 10 0 01111122 246788888843456677664 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++|||++.+..+ ||++++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI-ADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999999765 88999999999998876 6999999999998654
No 82
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-49 Score=355.57 Aligned_cols=227 Identities=25% Similarity=0.315 Sum_probs=183.3
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH--HHhh
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE--ERSL 155 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~--~~~~ 155 (325)
++++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.. ...+
T Consensus 1 l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (241)
T cd03256 1 IEVENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL--VEPTSGSVLIDGTDINKLKGKALRQLR 77 (241)
T ss_pred CEEeeEEEecCC-ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCCceEEECCEeccccCHhHHHHHH
Confidence 478999999963 25799999999999999999999999999999999998 678999999999998765521 1223
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhc-CCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL-GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..+++++|++.+++..++.+++........... ............++.++++.+++. +..++.+.+ |||||||||+|
T Consensus 78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~l 155 (241)
T cd03256 78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQ-LSGGQQQRVAI 155 (241)
T ss_pred hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCccc-CCHHHHHHHHH
Confidence 458899999988888899888765321100000 000001122234567788999995 556777764 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |+|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~-~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREY-ADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEeecCHHH
Confidence 99999999999999999999999999999999998754 88999999999999877 69999999999999987653
No 83
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-48 Score=361.86 Aligned_cols=220 Identities=27% Similarity=0.402 Sum_probs=185.4
Q ss_pred CcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 76 PLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
++|+++||+++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+...++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL--LEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECCcCcHHHHH
Confidence 479999999999642 24699999999999999999999999999999999998 689999999999998765544433
Q ss_pred hccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
..++|+||++. .+...++.+++.+.... .+ ....+...++.++++.+++. ++.++.+.. ||||||||++
T Consensus 81 -~~i~~v~q~~~~~~~~~tv~eni~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LSgGq~qrv~ 150 (279)
T PRK13650 81 -HKIGMVFQNPDNQFVGATVEDDVAFGLEN----KG---IPHEEMKERVNEALELVGMQ-DFKEREPAR-LSGGQKQRVA 150 (279)
T ss_pred -hhceEEEcChHHhcccccHHHHHHhhHHh----CC---CCHHHHHHHHHHHHHHCCCH-hHhhCCccc-CCHHHHHHHH
Confidence 35889999984 56667888887654211 11 22334445677889999996 567777765 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++.+++.|++++++ |+|||++|||++.+. . ||++++|++|+++..|+++
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~-~dri~~l~~G~i~~~g~~~ 225 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-L-SDRVLVMKNGQVESTSTPR 225 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-h-CCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999765 899999999999884 5 7999999999999999865
No 84
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.7e-48 Score=355.36 Aligned_cols=220 Identities=22% Similarity=0.281 Sum_probs=183.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH------
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP------ 150 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~------ 150 (325)
+++++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL--EQPEAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccccccchhh
Confidence 7999999999964 5799999999999999999999999999999999998 67899999999998864321
Q ss_pred -HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 151 -EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 151 -~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
....+..+++++|++.+++..++.+++....... .. ....+....+.++++.+++. ...++.+. +||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LS~Gq~ 150 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV---KG---EPKEEATARARELLAKVGLA-GKETSYPR-RLSGGQQ 150 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHcCCc-chhhCChh-hCChHHH
Confidence 1122346889999998888889988876532111 01 11223345567788999996 45666665 4999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+|||||+.+|++|||||||+|||+.+++.+.++|+++.++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDV-ADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999976688999999999998877 6999999999999998764
No 85
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-48 Score=354.70 Aligned_cols=220 Identities=21% Similarity=0.306 Sum_probs=185.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+++++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.....+.
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI--VPRDAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHHHHh
Confidence 7999999999963 5799999999999999999999999999999999998 67999999999999876655433334
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.+++++|++.+++.+++.+++....... . .....+....+.++++.+++. +..++.+. .|||||+|||+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~----~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrv~lar 150 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIR----D--DLSAEQREDRANELMEEFHIE-HLRDSMGQ-SLSGGERRRVEIAR 150 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcc----c--ccCHHHHHHHHHHHHHHcCCH-HHhhcchh-hCCHHHHHHHHHHH
Confidence 6899999998888889988876532110 0 111223345577788999985 45566665 49999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+.+|++|||||||+|||+.+++.+.++|++++++|.|||++|||++.+..+ ||++++|++|++++.|+++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~-~d~v~~l~~G~i~~~~~~~ 222 (241)
T PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAV-CERAYIVSQGHLIAHGTPT 222 (241)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh-cCEEEEEeCCeEEeeCCHH
Confidence 99999999999999999999999999999999876788999999999888877 6999999999999998765
No 86
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-48 Score=369.26 Aligned_cols=231 Identities=23% Similarity=0.280 Sum_probs=184.4
Q ss_pred CcEEEEEEEEEECC--CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC--CCCCccEEEECCEeCCCCCHH
Q 020477 76 PLLQVTGLTAVIAE--SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD--YEVTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 76 ~~l~~~~ls~~y~~--~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~--~~p~~G~I~~~g~~i~~~~~~ 151 (325)
++|+++||+++|+. +...+|+|+||+|++||+++|+|+||||||||+++|+|+.. ..|++|+|.|+|+++...+..
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999953 23569999999999999999999999999999999999832 136899999999999877654
Q ss_pred HHh---hccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCCCCC
Q 020477 152 ERS---LAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVNEGF 224 (325)
Q Consensus 152 ~~~---~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~L 224 (325)
.++ ...++|+||++. +.+.+++.+++......... .+.......+...++.++++.+++.. +.+++.+.+ |
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~-L 159 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTY-KGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYE-L 159 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhc-cccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchh-C
Confidence 432 246899999986 45667777766432211000 00000011223456778999999963 245666664 9
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
||||+|||+|||||+.+|++|||||||++||+.++.+++++|+++.++ |.|||+||||++++..+ ||+|++|++|+|+
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~-~dri~vm~~G~iv 238 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQW-ADKINVLYCGQTV 238 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-CCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 89999999999999887 6999999999999
Q ss_pred EEcCcc
Q 020477 304 KTGDAS 309 (325)
Q Consensus 304 ~~g~~~ 309 (325)
+.|+.+
T Consensus 239 e~g~~~ 244 (330)
T PRK15093 239 ETAPSK 244 (330)
T ss_pred EECCHH
Confidence 999764
No 87
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.6e-48 Score=349.66 Aligned_cols=215 Identities=20% Similarity=0.266 Sum_probs=179.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~ 154 (325)
||+++|++++|+. ++.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+... ..
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~ 77 (222)
T PRK10908 1 MIRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI--ERPSAGKIWFSGHDITRLKNREVPFL 77 (222)
T ss_pred CEEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCChhHHHHH
Confidence 5899999999942 35799999999999999999999999999999999998 6799999999999887654332 12
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..++|++|++.+++..++.+++...... .+ ....+....+.++++.+++. +..++.+.+ ||||||||++|
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~l 148 (222)
T PRK10908 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLII----AG---ASGDDIRRRVSAALDKVGLL-DKAKNFPIQ-LSGGEQQRVGI 148 (222)
T ss_pred HhheEEEecCccccccccHHHHHHhHHHh----cC---CCHHHHHHHHHHHHHHcCCh-hhhhCCchh-CCHHHHHHHHH
Confidence 34688999999888888988887654211 01 11223334567788999986 456777764 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
||||+.+|++|||||||++||+.+++.+.+.|+++++++.|||++|||++++..+ ||++++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRR-SYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEcc
Confidence 9999999999999999999999999999999999976688999999999999887 69999999999864
No 88
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=6.7e-49 Score=348.61 Aligned_cols=208 Identities=25% Similarity=0.401 Sum_probs=176.7
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++... ..+ +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~--~~~-~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL--IKPDSGEITFDGKSYQKN--IEA-LRR 73 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCCcccch--HHH-Hhh
Confidence 478999999963 5799999999999999999999999999999999998 678999999999987543 222 235
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++..++.+++....... +. . ..++.++++.+++. +..++.+.+ |||||||||+||||
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~----~~---~----~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~a 140 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLL----GI---R----KKRIDEVLDVVGLK-DSAKKKVKG-FSLGMKQRLGIALA 140 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhc----CC---c----HHHHHHHHHHcCCH-HHHhhhHhh-CCHHHHHHHHHHHH
Confidence 889999998888889999876543211 11 1 23456778899985 456677664 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|+.+|++|||||||+|||+.+++.+.++|++++++|.|||++|||++++..+ +|++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~-~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV-ADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh-cCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999876788999999999999877 6999999999998754
No 89
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.5e-48 Score=347.52 Aligned_cols=212 Identities=21% Similarity=0.329 Sum_probs=177.7
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hhh
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RSL 155 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~~ 155 (325)
++++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+... ..+
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~~ 77 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE--ELPTSGTIRVNGQDVSDLRGRAIPYLR 77 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcccCCHHHHHHHH
Confidence 4789999999642 5799999999999999999999999999999999998 6799999999999987654322 122
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..+++++|++.+++..++.+++....... + ....+...++.++++.+++. +..++.+. +||||||||++||
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrv~la 148 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVT----G---VPPREIRKRVPAALELVGLS-HKHRALPA-ELSGGEQQRVAIA 148 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHcCCH-HHhhCChh-hcCHHHHHHHHHH
Confidence 46889999999888889998876543211 1 11223334577889999985 45666666 4999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
|||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||++|||++++..+ ||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~-~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT-RHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEeCCcC
Confidence 999999999999999999999999999999999876688999999999999877 699999999974
No 90
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.9e-48 Score=348.72 Aligned_cols=214 Identities=30% Similarity=0.401 Sum_probs=177.6
Q ss_pred cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH-
Q 020477 77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER- 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~- 153 (325)
+|+++||+++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~ 78 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL--DNPTSGEVLFNGQSLSKLSSNERA 78 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEhhhcCHhHHH
Confidence 478999999996421 4699999999999999999999999999999999998 67999999999999876654322
Q ss_pred --hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 154 --SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 154 --~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
+...++|++|++.+++..++.+++....... . ....+....+.++++.+++. +..++.+.. ||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qr 149 (221)
T TIGR02211 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG----K---KSVKEAKERAYEMLEKVGLE-HRINHRPSE-LSGGERQR 149 (221)
T ss_pred HHHHhcEEEEecccccCCCCcHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHH
Confidence 2245889999998888889988876542110 0 11122334567789999996 556777764 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
|+|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ +.|||++|||++++.. +|++++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~--~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK--LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh--cCEEEEEeCCEec
Confidence 99999999999999999999999999999999999998754 7899999999998854 4999999999975
No 91
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-48 Score=353.52 Aligned_cols=219 Identities=21% Similarity=0.294 Sum_probs=183.9
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++||+++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +..
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~-~~~ 76 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL--IEPTSGEIFIDGEDIREQDPVEL-RRK 76 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCeEcCcCChHHh-hcc
Confidence 4789999999642 5699999999999999999999999999999999998 67999999999998876554333 235
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-ccccccCCCCCChHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
++|++|++.+++..++.+++...... .+ ....+....+.++++.+++.. ...++.+.+ |||||||||+|||
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-LS~G~~qrv~lar 148 (242)
T cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKL----LK---WPKEKIRERADELLALVGLDPAEFADRYPHE-LSGGQQQRVGVAR 148 (242)
T ss_pred eEEEccCccccCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCCcHHHHhcChhh-CCHHHHHHHHHHH
Confidence 88999999888888999887654211 11 112233456778899999963 256676654 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++.+..+ +|++++|++|++++.|+++
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRL-ADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999754 88999999999988877 6999999999999988764
No 92
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.1e-48 Score=401.64 Aligned_cols=274 Identities=21% Similarity=0.278 Sum_probs=212.7
Q ss_pred eehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCC---C--CCC-CCCCCcEEEEEEEEEECCCcccceeeeEE
Q 020477 27 VFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSS---D--GQD-EKSQPLLQVTGLTAVIAESKQEILKGVNL 100 (325)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~---~--~~~-~~~~~~l~~~~ls~~y~~~~~~iL~~vsl 100 (325)
.+..|+..+......++....+.+|+.++++.+++...... . ... ......|+++||+|+|++.++++|+|+||
T Consensus 421 ~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl 500 (710)
T TIGR03796 421 SFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSL 500 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeE
Confidence 34577888888888999999999999999876544322210 0 001 11234699999999998655789999999
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHH
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMA 180 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~ 180 (325)
+|++||.+||+|+||||||||+|+|+|+ ++|++|+|.+||.++..++....++ .+++++|++.+|++ |..+|+...
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~-~i~~v~Q~~~lf~g-Ti~eNi~l~ 576 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGL--YQPWSGEILFDGIPREEIPREVLAN-SVAMVDQDIFLFEG-TVRDNLTLW 576 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEeHHHCCHHHHHh-heeEEecCChhhhc-cHHHHhhCC
Confidence 9999999999999999999999999998 8899999999999999888766543 48899999998875 788887542
Q ss_pred HHHHhhhcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCC
Q 020477 181 YNARRRKLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255 (325)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD 255 (325)
.++.+.++..+. +.+.++.+..+.+..-..-+.+||||||||++|||||+++|++||||||||+||
T Consensus 577 ---------~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD 647 (710)
T TIGR03796 577 ---------DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALD 647 (710)
T ss_pred ---------CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCC
Confidence 122223332221 233344443222222222344699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 256 VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 256 ~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
+.+++.+.+.|++ .++|+|+|||+++.+.. +|+|++|++|++++.|+++ ++++.++.|
T Consensus 648 ~~te~~i~~~l~~---~~~T~IiitHrl~~i~~--~D~Iivl~~G~i~~~G~~~--~Ll~~~~~y 705 (710)
T TIGR03796 648 PETEKIIDDNLRR---RGCTCIIVAHRLSTIRD--CDEIIVLERGKVVQRGTHE--ELWAVGGAY 705 (710)
T ss_pred HHHHHHHHHHHHh---cCCEEEEEecCHHHHHh--CCEEEEEeCCEEEEecCHH--HHHHcCCcH
Confidence 9999999999986 36899999999988865 6999999999999999765 566666654
No 93
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.5e-48 Score=348.67 Aligned_cols=218 Identities=26% Similarity=0.350 Sum_probs=181.4
Q ss_pred CCcEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 75 QPLLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
.++|+++||+++|++.. +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+...
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL--DDGSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCeeEEECCEEcccCCHHH
Confidence 35899999999997422 2599999999999999999999999999999999998 6899999999999987665432
Q ss_pred H---hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 153 R---SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 153 ~---~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
+ +...+++++|++.+++..++.+++....... . ....+...++.++++.+++. +..++.+.. ||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~Ge~ 152 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR----G---ESSRQSRNGAKALLEQLGLG-KRLDHLPAQ-LSGGEQ 152 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCH-hHhhCChhh-CCHHHH
Confidence 1 2246889999998888889888876542111 1 11223345677889999996 556777764 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++. . +|++++|++|++++.
T Consensus 153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~-~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-R-CDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-h-CCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999998654 789999999999875 4 699999999999754
No 94
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-48 Score=346.75 Aligned_cols=210 Identities=24% Similarity=0.354 Sum_probs=176.9
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++.. . .+..
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~----~-~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI--ILPDSGEVLFDGKPLDI----A-ARNR 71 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCCchhH----H-HHcc
Confidence 478999999963 5799999999999999999999999999999999998 67999999999987642 1 1235
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++..++.+++...... .+ ....+....+.++++.+++. +..++.+. +||||||||++||||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrl~la~a 142 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQL----KG---LKKEEARRRIDEWLERLELS-EYANKRVE-ELSKGNQQKVQFIAA 142 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHH----cC---CChHHHHHHHHHHHHHcCCh-HHHhCcHh-hCCHHHHHHHHHHHH
Confidence 88999999888888998887653221 11 11223335577889999985 45666665 499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|+.+|++|||||||+|||+.+++.+.+.|+++.+++.|||++|||++++..+ +|++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEEL-CDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-hhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999876688999999999998877 6999999999998654
No 95
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.9e-48 Score=354.02 Aligned_cols=223 Identities=23% Similarity=0.334 Sum_probs=184.5
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC------
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM------ 148 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~------ 148 (325)
+.+|+++||++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~ 78 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGSIVVNGQTINLVRDKDGQ 78 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcccccccccc
Confidence 457999999999963 6799999999999999999999999999999999998 678999999999987531
Q ss_pred ----C--HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC
Q 020477 149 ----E--PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE 222 (325)
Q Consensus 149 ----~--~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 222 (325)
. .....+..++|++|++.+++..++.+++....... .. ....+...++.++++.+++.....++.+.
T Consensus 79 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~- 151 (257)
T PRK10619 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV---LG---LSKQEARERAVKYLAKVGIDERAQGKYPV- 151 (257)
T ss_pred cccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHHcCCChhhhhCCcc-
Confidence 1 11122346899999999888889999876432110 11 11233345677889999996322356665
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
.||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++|.|||+||||++++..+ ||++++|++|++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~-~d~i~~l~~G~i 230 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV-SSHVIFLHQGKI 230 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEECCEE
Confidence 5999999999999999999999999999999999999999999999976789999999999999877 699999999999
Q ss_pred EEEcCcc
Q 020477 303 IKTGDAS 309 (325)
Q Consensus 303 v~~g~~~ 309 (325)
++.|+++
T Consensus 231 ~~~~~~~ 237 (257)
T PRK10619 231 EEEGAPE 237 (257)
T ss_pred EEeCCHH
Confidence 9998765
No 96
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.5e-48 Score=362.86 Aligned_cols=217 Identities=21% Similarity=0.311 Sum_probs=185.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+++++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.++|+++.... . ..+.
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl--~~~~~G~i~i~g~~~~~~~-~-~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY--LPPDSGSVQVCGEDVLQNP-K-EVQR 75 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCh-H-HHHh
Confidence 4899999999963 6799999999999999999999999999999999998 6799999999999886532 2 2234
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+++.+++.+++.+.... .+. ...+...++.++++.+++. +..++.+.. |||||||||+|||
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~----~~~---~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~G~~qrv~la~ 146 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGI----YGM---KGQLLKQRVEEMIELVGLR-PEQHKKIGQ-LSKGYRQRVGLAQ 146 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHH----cCC---CHHHHHHHHHHHHHHCCCc-hHhcCchhh-CCHHHHHHHHHHH
Confidence 589999999999999999987654221 111 1223345677889999996 456777764 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+++|++|||||||+|||+.+++.+++.|+++++ ++|||++||+++++..+ ||+|++|++|++++.|+.+.
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~-~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAI-CDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999965 68999999999999987 69999999999999998764
No 97
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-48 Score=346.44 Aligned_cols=211 Identities=24% Similarity=0.348 Sum_probs=177.4
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++|+++.|++ +++|+|+||+|++| +++|+||||||||||+++|+|+ ++|++|+|.++|+++...+ ... +..
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~-~~~-~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL--TPPSSGTIRIDGQDVLKQP-QKL-RRR 73 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCCccccch-HHH-Hhh
Confidence 478999999964 57999999999999 9999999999999999999998 6799999999999876544 222 245
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++.+++.+++....... + ....+....+.++++.+++. +..++.+.+ |||||||||+||||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~a 144 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLK----G---IPSKEVKARVDEVLELVNLG-DRAKKKIGS-LSGGMRRRVGIAQA 144 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHh----C---CCHHHHHHHHHHHHHHCCCH-HHHhCchhh-CCHHHHHHHHHHHH
Confidence 889999999888889988876543211 1 11122334567788999996 456777764 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++++..+ +|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~-~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESL-CNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHh-CCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999976 48999999999998876 6999999999998754
No 98
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-48 Score=351.84 Aligned_cols=217 Identities=27% Similarity=0.437 Sum_probs=179.3
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+........
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL--LPVKSGSIRLDGEDITKLPPHERARAG 76 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCCCCHHHHHHhC
Confidence 578999999974 5799999999999999999999999999999999998 679999999999998766554333346
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++|++.+++..++.+++....... +. ... ....++++.++...+..++.+. +|||||+||++||||
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~---~~~---~~~~~~l~~~~~l~~~~~~~~~-~LS~G~~qrv~la~a 145 (230)
T TIGR03410 77 IAYVPQGREIFPRLTVEENLLTGLAAL----PR---RSR---KIPDEIYELFPVLKEMLGRRGG-DLSGGQQQQLAIARA 145 (230)
T ss_pred eEEeccCCcccCCCcHHHHHHHHHHhc----Cc---chH---HHHHHHHHHHHhHHHHhhCChh-hCCHHHHHHHHHHHH
Confidence 889999999888889988876543211 11 111 1234455555521244566665 499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|+.+|++|||||||+|||+.+++.+.++|.++.++ +.|||++|||++++..+ ||+++++++|++++.|+.+.
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL-ADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999998764 78999999999999877 69999999999999998754
No 99
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4e-48 Score=350.26 Aligned_cols=216 Identities=28% Similarity=0.382 Sum_probs=182.0
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+...+ .
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~i~~~~~~~~--~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL--YVAQEGQISVAGHDLRRAPRAAL--A 74 (236)
T ss_pred CEEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEcccCChhhh--h
Confidence 5889999999963 5799999999999999999999999999999999998 67999999999998866543322 2
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.+++++|++.+++..++.+++...... .+ ....+....+.++++.+++. +.+++.+.. |||||+||++|||
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~G~~qrl~lar 145 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAAL----HG---LSRAEARERIAALLARLGLA-ERADDKVRE-LNGGHRRRVEIAR 145 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCh-hhhcCChhh-CCHHHHHHHHHHH
Confidence 588999999887888888887543211 01 11223334567788999996 456777764 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+.+|++|||||||+|||+.+++.+.+.|+++++ +|.|||++|||++++. . ||++++|++|++++.|+++
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~-~d~i~~l~~G~i~~~~~~~ 217 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-A-DDRLVVLHRGRVLADGAAA 217 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-h-CCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999874 5889999999999986 4 7999999999999998764
No 100
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.7e-48 Score=356.47 Aligned_cols=224 Identities=24% Similarity=0.396 Sum_probs=184.1
Q ss_pred cEEEEEEEEEECCC-------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC
Q 020477 77 LLQVTGLTAVIAES-------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149 (325)
Q Consensus 77 ~l~~~~ls~~y~~~-------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~ 149 (325)
+|+++||++.|+.. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL--EKPAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEccccC
Confidence 68999999999631 35799999999999999999999999999999999998 6899999999999987655
Q ss_pred HHHH--hhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020477 150 PEER--SLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS 225 (325)
Q Consensus 150 ~~~~--~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 225 (325)
.... .+..++|++|++ .+++..++.+++....... .. ....+...++.++++.+++.....++.+.. ||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-LS 152 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL---TS---LDESEQKARIAELLDMVGLRSEDADKLPRQ-LS 152 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHcCCChhhhhCChhh-CC
Confidence 4321 224588999997 3556678888775432110 00 112223355778899999853456677664 99
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
|||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++ |.|||++|||++.+..+ ||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSF-CQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHH-hcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998764 88999999999999877 69999999999999
Q ss_pred EcCccH
Q 020477 305 TGDASI 310 (325)
Q Consensus 305 ~g~~~~ 310 (325)
.|+++.
T Consensus 232 ~g~~~~ 237 (265)
T TIGR02769 232 ECDVAQ 237 (265)
T ss_pred ECCHHH
Confidence 998653
No 101
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-48 Score=360.65 Aligned_cols=221 Identities=20% Similarity=0.299 Sum_probs=181.2
Q ss_pred cEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---
Q 020477 77 LLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP--- 150 (325)
Q Consensus 77 ~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~--- 150 (325)
.++++||+++|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++.....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL--LKPTTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECccccccch
Confidence 38999999999632 14699999999999999999999999999999999998 68999999999999864321
Q ss_pred HHHhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020477 151 EERSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE 228 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq 228 (325)
....+..++++||++ .+++ .++.+++.+.... .+ ....+...++.++++.+++..+..++.+. .|||||
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-~LSgGq 150 (286)
T PRK13646 80 IRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKN----FK---MNLDEVKNYAHRLLMDLGFSRDVMSQSPF-QMSGGQ 150 (286)
T ss_pred HHHHHhheEEEecChHhccch-hhHHHHHHhhHHH----cC---CCHHHHHHHHHHHHHHcCCChhhhhCCcc-cCCHHH
Confidence 112234589999987 3444 4788877643211 11 12334445677889999995345666665 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||+||||++++..+ ||++++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~-~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARY-ADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999975 489999999999998877 69999999999999998
Q ss_pred cc
Q 020477 308 AS 309 (325)
Q Consensus 308 ~~ 309 (325)
++
T Consensus 230 ~~ 231 (286)
T PRK13646 230 PK 231 (286)
T ss_pred HH
Confidence 65
No 102
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=7.4e-48 Score=397.83 Aligned_cols=268 Identities=22% Similarity=0.305 Sum_probs=209.9
Q ss_pred eehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020477 27 VFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGE 106 (325)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge 106 (325)
.+..|+..+......++....+.+|+.++++.+++................++++||+|+|+++.+++|+|+||+|++||
T Consensus 413 ~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~ 492 (694)
T TIGR03375 413 RALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGE 492 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCC
Confidence 34577888888889999999999999999876543221111111111234699999999997555679999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
.+||+|+||||||||+|+|+|+ ++|++|+|.+||.++..++....+. .+++++|++.+|.+ |..+|+...
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~l~~~~~~~lr~-~i~~v~Q~~~lf~~-TI~eNi~~~------ 562 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGL--YQPTEGSVLLDGVDIRQIDPADLRR-NIGYVPQDPRLFYG-TLRDNIALG------ 562 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEhhhCCHHHHHh-ccEEECCChhhhhh-hHHHHHhCC------
Confidence 9999999999999999999998 8899999999999999888776543 48899999998875 888887543
Q ss_pred hcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020477 187 KLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~ 261 (325)
.++.+.++..+. +.+.++.+..+.+..-..-+..||||||||++|||||+++|++||||||||+||+++++.
T Consensus 563 ---~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~ 639 (694)
T TIGR03375 563 ---APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEER 639 (694)
T ss_pred ---CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 222233332222 233444443322222222234699999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 640 i~~~l~~~~~-~~T~iiItHrl~~~~~--~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 640 FKDRLKRWLA-GKTLVLVTHRTSLLDL--VDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHHhC-CCEEEEEecCHHHHHh--CCEEEEEeCCEEEeeCCHHH
Confidence 9999999864 6899999999988764 69999999999999998654
No 103
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.8e-48 Score=371.76 Aligned_cols=211 Identities=25% Similarity=0.330 Sum_probs=182.6
Q ss_pred EECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH---hhccEEEec
Q 020477 86 VIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER---SLAGLFMSF 162 (325)
Q Consensus 86 ~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~---~~~~i~~~~ 162 (325)
+|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... ++..++|+|
T Consensus 2 ~~~--~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl--~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~ 77 (363)
T TIGR01186 2 KTG--GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL--IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77 (363)
T ss_pred ccC--CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC--CCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEE
Confidence 454 36799999999999999999999999999999999998 78999999999999988766543 235689999
Q ss_pred cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC
Q 020477 163 QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA 242 (325)
Q Consensus 163 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p 242 (325)
|++.+|+.+|+.+|+.+.... .+ ....+..+++.++++.+++. .+.++.+.+ |||||||||+|||||+.+|
T Consensus 78 Q~~~l~~~~TV~eNi~~~~~~----~~---~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~-LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 78 QQFALFPHMTILQNTSLGPEL----LG---WPEQERKEKALELLKLVGLE-EYEHRYPDE-LSGGMQQRVGLARALAAEP 148 (363)
T ss_pred CCCcCCCCCCHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHhcCCc-hhhhCChhh-CCHHHHHHHHHHHHHhcCC
Confidence 999999999999998765321 11 12334456788899999995 577888775 9999999999999999999
Q ss_pred CEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 243 DLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 243 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
++|||||||++||+.+++.+.+.|.++.++ ++|||+||||++++..+ ||+|++|++|++++.|+++.
T Consensus 149 ~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~-~drI~vl~~G~iv~~g~~~e 216 (363)
T TIGR01186 149 DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI-GDRIVIMKAGEIVQVGTPDE 216 (363)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999754 88999999999998887 69999999999999998653
No 104
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.1e-48 Score=345.97 Aligned_cols=210 Identities=26% Similarity=0.420 Sum_probs=173.2
Q ss_pred EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020477 79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL 158 (325)
Q Consensus 79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 158 (325)
+++|++++|++..+.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+...++ ..+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~~i 77 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL--LGPTSGEVLVDGKDLTKLSLKELR-RKV 77 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEcccCCHHHHH-hhc
Confidence 36899999964225799999999999999999999999999999999998 679999999999988765443332 358
Q ss_pred EEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 159 FMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 159 ~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+|++|++. .++..++.+++...... .+ ....+....+.++++.+++. +..++.+.. |||||||||+||||
T Consensus 78 ~~~~q~~~~~~~~~t~~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~lara 148 (211)
T cd03225 78 GLVFQNPDDQFFGPTVEEEVAFGLEN----LG---LPEEEIEERVEEALELVGLE-GLRDRSPFT-LSGGQKQRVAIAGV 148 (211)
T ss_pred eEEecChhhhcCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCcH-hhhcCCccc-CCHHHHHHHHHHHH
Confidence 89999975 35567888887553211 11 11222334567788999996 556777764 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
|+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||++++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~-~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL-ADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEeCCC
Confidence 9999999999999999999999999999999976688999999999999887 69999999885
No 105
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-48 Score=357.98 Aligned_cols=221 Identities=30% Similarity=0.409 Sum_probs=186.5
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++++++||+++|++..+++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++...+....+
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~--~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL--LLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECCcCcHHHHh
Confidence 358999999999964345799999999999999999999999999999999998 679999999999998766544433
Q ss_pred hccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
..++|+||++. .+...++.+++...... .+ ....+...++.++++.+++. +..++.+.. |||||||||+
T Consensus 81 -~~i~~~~q~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LS~G~~qrv~ 150 (279)
T PRK13635 81 -RQVGMVFQNPDNQFVGATVQDDVAFGLEN----IG---VPREEMVERVDQALRQVGME-DFLNREPHR-LSGGQKQRVA 150 (279)
T ss_pred -hheEEEEeCHHHhcccccHHHHHhhhHhh----CC---CCHHHHHHHHHHHHHHcCCh-hhhhCCccc-CCHHHHHHHH
Confidence 45899999984 56667888887654221 11 12334445678889999996 567777765 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++.++++|+++.++ |.|||++|||++++. . ||++++|++|++++.|+.+
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~-~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-Q-ADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-c-CCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999865 899999999999886 4 7999999999999999764
No 106
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-48 Score=357.16 Aligned_cols=219 Identities=24% Similarity=0.367 Sum_probs=181.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
|++++||+++|++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+.......
T Consensus 1 ml~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (274)
T PRK13644 1 MIRLENVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL--LRPQKGKVLVSGIDTGDFSKLQGIRK 77 (274)
T ss_pred CEEEEEEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEECCccccHHHHHh
Confidence 5889999999963 35699999999999999999999999999999999998 67999999999999866543222234
Q ss_pred cEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 157 GLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 157 ~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
.+++++|++. .+...++.+++.+.... .+ ....+....+.++++.+++. +..++.+.. |||||+|||+||
T Consensus 78 ~i~~v~q~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~G~~qrv~la 148 (274)
T PRK13644 78 LVGIVFQNPETQFVGRTVEEDLAFGPEN----LC---LPPIEIRKRVDRALAEIGLE-KYRHRSPKT-LSGGQGQCVALA 148 (274)
T ss_pred heEEEEEChhhhcccchHHHHHHhhHHH----cC---CCHHHHHHHHHHHHHHCCCH-HHhcCCccc-CCHHHHHHHHHH
Confidence 5889999985 35557888887543211 11 12333345677789999996 566777764 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++.+. . ||++++|++|++++.|+++
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~-~d~v~~l~~G~i~~~g~~~ 220 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-D-ADRIIVMDRGKIVLEGEPE 220 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-h-CCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999767899999999999984 4 7999999999999998765
No 107
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.4e-48 Score=389.46 Aligned_cols=272 Identities=22% Similarity=0.309 Sum_probs=215.6
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.++........ .......++++||+|+|++ ++++|+|+||+|++||.
T Consensus 281 ~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~ 357 (567)
T COG1132 281 LLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEK 357 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCC-CCccccCceEEEcCCCE
Confidence 45678888888889999999999999998864432222111 1122345999999999974 46899999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
+||+||||||||||+++|+|+ ++|++|+|.+||.++...+...+++ .+++++|++.+|. -|+.+|+.++
T Consensus 358 vaiVG~sGsGKSTl~~LL~r~--~~~~~G~I~idg~dI~~i~~~~lr~-~I~~V~Qd~~LF~-~TI~~NI~~g------- 426 (567)
T COG1132 358 VAIVGPSGSGKSTLIKLLLRL--YDPTSGEILIDGIDIRDISLDSLRK-RIGIVSQDPLLFS-GTIRENIALG------- 426 (567)
T ss_pred EEEECCCCCCHHHHHHHHhcc--CCCCCCeEEECCEehhhcCHHHHHH-hccEEcccceeec-ccHHHHHhcC-------
Confidence 999999999999999999998 8899999999999999998877554 3778999999998 5888887654
Q ss_pred cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
.++.++++..+. +.+.++.++-+.+..-..-+..||||||||++||||++++|++||||||||+||+++++.+
T Consensus 427 --~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I 504 (567)
T COG1132 427 --RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALI 504 (567)
T ss_pred --CCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHH
Confidence 233334443333 3444555522212222222346999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
.+.+.++. +++|+|+|+|++..+.. +|+|+||++|++++.|+++ +++..+|+|
T Consensus 505 ~~~l~~l~-~~rT~iiIaHRlsti~~--aD~IiVl~~G~i~e~G~h~--eLl~~~g~y 557 (567)
T COG1132 505 QDALKKLL-KGRTTLIIAHRLSTIKN--ADRIIVLDNGRIVERGTHE--ELLAKGGLY 557 (567)
T ss_pred HHHHHHHh-cCCEEEEEeccHhHHHh--CCEEEEEECCEEEEecCHH--HHHHcCCHH
Confidence 99999876 45799999999987776 6999999999999999764 677777754
No 108
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.6e-48 Score=345.51 Aligned_cols=204 Identities=25% Similarity=0.383 Sum_probs=169.7
Q ss_pred EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020477 79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL 158 (325)
Q Consensus 79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 158 (325)
+++|++++|+++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++.. .. .+..+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~---~~-~~~~i 73 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL--IKESSGSILLNGKPIKA---KE-RRKSI 73 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEhhh---HH-hhcce
Confidence 368999999632 5799999999999999999999999999999999998 67999999999998743 12 22358
Q ss_pred EEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 159 FMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 159 ~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+|++|++. .+...++.+++...... .+ .. ..++.++++.+++. +..++.+.+ ||||||||++||||
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~----~~-----~~--~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~lara 140 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKE----LD-----AG--NEQAETVLKDLDLY-ALKERHPLS-LSGGQKQRLAIAAA 140 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhh----cC-----cc--HHHHHHHHHHcCCc-hhcCCCchh-CCHHHHHHHHHHHH
Confidence 89999974 23346888887543211 11 01 13467789999996 567777764 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
|+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++.+..+ ||++++|++|+++
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~G~iv 205 (205)
T cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV-CDRVLLLANGAIV 205 (205)
T ss_pred HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEC
Confidence 9999999999999999999999999999999976788999999999998877 6999999999974
No 109
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-48 Score=381.16 Aligned_cols=225 Identities=30% Similarity=0.458 Sum_probs=190.0
Q ss_pred CCCcEEEEEEEEEECC---------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020477 74 SQPLLQVTGLTAVIAE---------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN 144 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~---------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~ 144 (325)
..|+++++||+++|.. +...+++||||+|.+||++||||+||||||||.|+|+|+ .+|++|+|.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL--~~P~~G~i~~~g~~ 354 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL--LPPSSGSIIFDGQD 354 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEEeCcc
Confidence 5789999999999973 124689999999999999999999999999999999998 67999999999988
Q ss_pred CCCCCHH--HHhhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC
Q 020477 145 LLEMEPE--ERSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV 220 (325)
Q Consensus 145 i~~~~~~--~~~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 220 (325)
...+.. .+.+..+.++||+|. +.|.+|+.+.+........ . ....+..+++.++++.+++..+++++++
T Consensus 355 -~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~----~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP 427 (539)
T COG1123 355 -LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG----G--GSGAERRARVAELLELVGLPPEFLDRYP 427 (539)
T ss_pred -cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc----c--cchHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 333322 122235678889885 5677888887765543211 0 1123445678899999999877899999
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 221 ~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
++ ||||||||++|||||+.+|++||+|||||+||+..+..++++|++++++ |.|+|+||||+.++..+ ||||+||++
T Consensus 428 ~e-lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i-~drv~vm~~ 505 (539)
T COG1123 428 HE-LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI-ADRVAVMYD 505 (539)
T ss_pred hh-cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhh-CceEEEEEC
Confidence 86 9999999999999999999999999999999999999999999999866 99999999999999998 699999999
Q ss_pred CEEEEEcCcc
Q 020477 300 GRIIKTGDAS 309 (325)
Q Consensus 300 G~iv~~g~~~ 309 (325)
|+|++.|+.+
T Consensus 506 G~iVE~G~~~ 515 (539)
T COG1123 506 GRIVEEGPTE 515 (539)
T ss_pred CeEEEeCCHH
Confidence 9999999654
No 110
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.1e-48 Score=402.67 Aligned_cols=274 Identities=18% Similarity=0.318 Sum_probs=213.5
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.+++................++++||+|+|+. ++++|+|+||+|++||.
T Consensus 424 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~ 502 (708)
T TIGR01193 424 FLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY-GSNILSDISLTIKMNSK 502 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC-CCcceeceeEEECCCCE
Confidence 45677888888889999999999999988755443221110111122346999999999974 46799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
+||+|+||||||||+++|+|+ ++|++|+|++||.++..++...++. .+++++|++.+|++ |..+|+....
T Consensus 503 vaIvG~SGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~-~i~~v~Q~~~lf~g-TI~eNi~l~~------ 572 (708)
T TIGR01193 503 TTIVGMSGSGKSTLAKLLVGF--FQARSGEILLNGFSLKDIDRHTLRQ-FINYLPQEPYIFSG-SILENLLLGA------ 572 (708)
T ss_pred EEEECCCCCCHHHHHHHHhcc--CCCCCcEEEECCEEHHHcCHHHHHH-heEEEecCceehhH-HHHHHHhccC------
Confidence 999999999999999999998 8899999999999999888776554 48899999999876 8888875531
Q ss_pred cCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
.++.+.++..+ .+.+.++.+..+.+..-..-+.+||||||||++|||||+++|++||||||||+||+++++.+
T Consensus 573 --~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i 650 (708)
T TIGR01193 573 --KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650 (708)
T ss_pred --CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence 11222232222 23344444443322222233446999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
.+.|+++ +++|+|+|||+++.+.. +|+|++|++|++++.|+.+ ++++..|.|
T Consensus 651 ~~~L~~~--~~~T~IiitHr~~~~~~--~D~i~~l~~G~i~~~G~~~--~L~~~~~~y 702 (708)
T TIGR01193 651 VNNLLNL--QDKTIIFVAHRLSVAKQ--SDKIIVLDHGKIIEQGSHD--ELLDRNGFY 702 (708)
T ss_pred HHHHHHh--cCCEEEEEecchHHHHc--CCEEEEEECCEEEEECCHH--HHHhcCCcH
Confidence 9999985 36899999999988764 6999999999999999764 566666654
No 111
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-48 Score=372.33 Aligned_cols=222 Identities=24% Similarity=0.359 Sum_probs=187.3
Q ss_pred CcEEEEEEEEEECCCc----------------------ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC
Q 020477 76 PLLQVTGLTAVIAESK----------------------QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~----------------------~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p 133 (325)
.+|+++||++.|+... ..+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl--~~p 80 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL--IEP 80 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC--CCC
Confidence 4688888888886521 1279999999999999999999999999999999998 689
Q ss_pred CccEEEECCEeCCCCCHHHH---hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcC
Q 020477 134 TEGSVVFKGENLLEMEPEER---SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210 (325)
Q Consensus 134 ~~G~I~~~g~~i~~~~~~~~---~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (325)
++|+|.++|+++...+.... ++..++|+||++.+|+.+|+.+++.+..... +. ...+..+++.++++.++
T Consensus 81 ~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~----~~---~~~~~~~~~~e~L~~~g 153 (400)
T PRK10070 81 TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA----GI---NAEERREKALDALRQVG 153 (400)
T ss_pred CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHcC
Confidence 99999999999977665432 2346899999999999999999987653211 11 12333456778899999
Q ss_pred CccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhh
Q 020477 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFI 289 (325)
Q Consensus 211 l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~ 289 (325)
+. ++.++.+.+ |||||||||+|||||+.+|++|||||||++||+.+++.+.+.|.++.+ .|+|||+||||++++..+
T Consensus 154 L~-~~~~~~~~~-LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 154 LE-NYAHSYPDE-LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred CC-hhhhcCccc-CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 96 567777765 999999999999999999999999999999999999999999999865 488999999999998877
Q ss_pred CCcEEEEEeCCEEEEEcCcc
Q 020477 290 KPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 290 ~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|++++|++|++++.|+++
T Consensus 232 -~Dri~vL~~G~i~~~g~~~ 250 (400)
T PRK10070 232 -GDRIAIMQNGEVVQVGTPD 250 (400)
T ss_pred -CCEEEEEECCEEEecCCHH
Confidence 6999999999999988764
No 112
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.9e-48 Score=363.60 Aligned_cols=210 Identities=26% Similarity=0.336 Sum_probs=177.6
Q ss_pred EEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccC
Q 020477 85 AVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQS 164 (325)
Q Consensus 85 ~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~ 164 (325)
++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.++|+++.... ... +..+++++|+
T Consensus 1 k~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~-~~~-~~~i~~~~q~ 74 (302)
T TIGR01188 1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL--LRPTSGTARVAGYDVVREP-RKV-RRSIGIVPQY 74 (302)
T ss_pred CeeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCH-HHH-HhhcEEecCC
Confidence 35753 6799999999999999999999999999999999998 6799999999999886532 222 2347899999
Q ss_pred CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCE
Q 020477 165 PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244 (325)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~l 244 (325)
+.+++.+++.+++.+.... .+ ....+...++.++++.+++. +..++.+.. |||||||||+|||||+++|++
T Consensus 75 ~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~la~al~~~p~l 145 (302)
T TIGR01188 75 ASVDEDLTGRENLEMMGRL----YG---LPKDEAEERAEELLELFELG-EAADRPVGT-YSGGMRRRLDIAASLIHQPDV 145 (302)
T ss_pred CCCCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hHhCCchhh-CCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999987654221 11 11223345677889999996 567777765 999999999999999999999
Q ss_pred EEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 245 AILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 245 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||||||+|||+.+++.++++|++++++|.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 146 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 210 (302)
T TIGR01188 146 LFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKL-CDRIAIIDHGRIIAEGTPEE 210 (302)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999977789999999999999887 69999999999999998754
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-48 Score=350.18 Aligned_cols=221 Identities=23% Similarity=0.293 Sum_probs=183.0
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC---CH--H
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM---EP--E 151 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~---~~--~ 151 (325)
+|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++... .. .
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL--EMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEecccccccchhhH
Confidence 5899999999964 5799999999999999999999999999999999998 679999999999987311 11 1
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
...+.+++|++|++.+++.+++.+++....... .+ ....+....+.+.++.+++. ...++.+.. ||||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~G~~qr 149 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRV---LG---LSKDQALARAEKLLERLRLK-PYADRFPLH-LSGGQQQR 149 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHH---cC---CCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHH
Confidence 122246889999999888889988875422110 11 11223334577788999995 566777764 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++|+|||++|||++++..+ +|++++|++|++++.|+++.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKT-ASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999876689999999999998877 69999999999999987653
No 114
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-48 Score=355.72 Aligned_cols=225 Identities=21% Similarity=0.278 Sum_probs=185.8
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
+.++|+++||++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+...+
T Consensus 8 ~~~~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 8 SDTTFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH--QPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred CCceEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCEehhhCCHHHH
Confidence 3468999999999963 5799999999999999999999999999999999998 67999999999998865554433
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
+ ..+++++|++.+++.+++.+++....... .............++.++++.+++. +..++.+.+ |||||||||+
T Consensus 84 ~-~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~ 157 (265)
T PRK10575 84 A-RKVAYLPQQLPAAEGMTVRELVAIGRYPW---HGALGRFGAADREKVEEAISLVGLK-PLAHRLVDS-LSGGERQRAW 157 (265)
T ss_pred h-hheEEeccCCCCCCCccHHHHHHhCcccc---cccccCCCHHHHHHHHHHHHHcCCH-HHhcCCccc-CCHHHHHHHH
Confidence 3 35889999988888888888875432100 0000000122234567788999995 566777765 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++.+.++|.+++++ |.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~-~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARY-CDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999754 88999999999999877 6999999999999988764
No 115
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=7.7e-48 Score=354.74 Aligned_cols=224 Identities=23% Similarity=0.336 Sum_probs=181.5
Q ss_pred CCcEEEEEEEEEECC-------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC
Q 020477 75 QPLLQVTGLTAVIAE-------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE 147 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~-------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~ 147 (325)
+++|+++||+++|++ +.+++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM--IEPTSGELLIDDHPLHF 79 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCC
Confidence 358999999999962 124699999999999999999999999999999999998 78999999999998864
Q ss_pred CCHHHHhhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020477 148 MEPEERSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS 225 (325)
Q Consensus 148 ~~~~~~~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 225 (325)
.....+ ...++|++|++. +++..++.+++....... . .....+..+.+.++++.+++..+..++.+. .||
T Consensus 80 ~~~~~~-~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~---~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LS 151 (267)
T PRK15112 80 GDYSYR-SQRIRMIFQDPSTSLNPRQRISQILDFPLRLN---T---DLEPEQREKQIIETLRQVGLLPDHASYYPH-MLA 151 (267)
T ss_pred CchhhH-hccEEEEecCchhhcCcchhHHHHHHHHHHhc---c---CCCHHHHHHHHHHHHHHcCCChHHHhcCch-hcC
Confidence 333222 235889999975 455567766665432110 0 011223334577889999995345566665 499
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
|||||||+|||||+.+|++|||||||+|||+.+++.+.+.|.++.++ |.|||++|||++.+..+ ||++++|++|++++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~-~d~i~~l~~G~i~~ 230 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHI-SDQVLVMHQGEVVE 230 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHh-cCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999754 88999999999999877 69999999999999
Q ss_pred EcCcc
Q 020477 305 TGDAS 309 (325)
Q Consensus 305 ~g~~~ 309 (325)
.|+++
T Consensus 231 ~~~~~ 235 (267)
T PRK15112 231 RGSTA 235 (267)
T ss_pred cCCHH
Confidence 88754
No 116
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.2e-47 Score=349.38 Aligned_cols=219 Identities=24% Similarity=0.366 Sum_probs=180.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-----ccEEEECCEeCCCCCH-
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-----EGSVVFKGENLLEMEP- 150 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-----~G~I~~~g~~i~~~~~- 150 (325)
+++++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|+ +|+|.++|+++...+.
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 1 AIEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM--NDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred CEEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc--CCCCcCCCCceEEEECCEEccccccc
Confidence 5889999999964 5699999999999999999999999999999999998 6677 9999999998864321
Q ss_pred HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020477 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG 227 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG 227 (325)
....+..++|+||++.+++ .++.+++....... +. ....+....+.++++.+++.. +..++.+. +||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~----~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LSgG 148 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH----GI--KDKKELDEIVEESLKKAALWDEVKDRLHDSAL-GLSGG 148 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhc----CC--CCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc-cCCHH
Confidence 1122346899999998888 88888876543211 10 112233455777889999852 34566665 49999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||||++|||||+.+|++|||||||+|||+.++..++++|++++++ .|||+||||++.+..+ ||++++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARI-SDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHHHHh-CCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999998764 8999999999988877 69999999999999987
Q ss_pred cc
Q 020477 308 AS 309 (325)
Q Consensus 308 ~~ 309 (325)
++
T Consensus 227 ~~ 228 (247)
T TIGR00972 227 TE 228 (247)
T ss_pred HH
Confidence 65
No 117
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-48 Score=375.31 Aligned_cols=266 Identities=26% Similarity=0.350 Sum_probs=206.0
Q ss_pred chHhHh-hhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEE
Q 020477 31 PALPLL-CRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHA 109 (325)
Q Consensus 31 ~~~~l~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~ 109 (325)
++.|+. .......+...+..|+.++.+.+++...+ ..+.......++++||+|+|++...++|+|+||++++||.+|
T Consensus 291 af~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~--~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvA 368 (573)
T COG4987 291 AFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP--DEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVA 368 (573)
T ss_pred HHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC--ccccCCccceeeeccceeecCCCccchhhccceeecCCCeEE
Confidence 344455 44455666777788888887655443322 111111222899999999999766689999999999999999
Q ss_pred EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC
Q 020477 110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG 189 (325)
Q Consensus 110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (325)
|+|+||||||||+++|+|. ++|++|+|.++|.++..++.+..+. .+.++.|.+.+|.+ |..+|+.. .
T Consensus 369 IlG~SGsGKSTllqLl~~~--~~~~~G~i~~~g~~~~~l~~~~~~e-~i~vl~Qr~hlF~~-Tlr~NL~l---------A 435 (573)
T COG4987 369 ILGRSGSGKSTLLQLLAGA--WDPQQGSITLNGVEIASLDEQALRE-TISVLTQRVHLFSG-TLRDNLRL---------A 435 (573)
T ss_pred EECCCCCCHHHHHHHHHhc--cCCCCCeeeECCcChhhCChhhHHH-HHhhhccchHHHHH-HHHHHHhh---------c
Confidence 9999999999999999997 8899999999999999988765433 36677899988764 56666543 3
Q ss_pred CCCCChHHHHHhHHHHHHhcCCccc------ccc---ccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHH
Q 020477 190 QPEIGPIEFYAYLYPKLERLSMKTD------FLN---RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260 (325)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~l~~~------~~~---~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~ 260 (325)
.++.++++.+ ++++++|+..- -++ ..-++.|||||+||++|||+|+++.+++||||||.|||+.+++
T Consensus 436 ~~~AsDEel~----~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~ 511 (573)
T COG4987 436 NPDASDEELW----AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511 (573)
T ss_pred CCCCCHHHHH----HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence 4455555544 34555555321 111 2234569999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 261 DVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 261 ~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
++++.|.+..+ |+|+|+|||++..++. +|+|+||++|+++++|++. +++.++|++
T Consensus 512 ~vL~ll~~~~~-~kTll~vTHrL~~le~--~drIivl~~Gkiie~G~~~--~Ll~~~g~~ 566 (573)
T COG4987 512 QVLALLFEHAE-GKTLLMVTHRLRGLER--MDRIIVLDNGKIIEEGTHA--ELLANNGRY 566 (573)
T ss_pred HHHHHHHHHhc-CCeEEEEecccccHhh--cCEEEEEECCeeeecCCHH--hhhccccHH
Confidence 99999998754 7899999999998886 5999999999999999765 566777754
No 118
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-49 Score=355.33 Aligned_cols=223 Identities=24% Similarity=0.337 Sum_probs=196.7
Q ss_pred CcEEEEEEEEEECCCc----------------------ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC
Q 020477 76 PLLQVTGLTAVIAESK----------------------QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~----------------------~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p 133 (325)
..++++||++-|+... ..-++|+||+|++||++.|+|-||||||||+|+|.+| ++|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL--iep 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL--IEP 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhcc--CCC
Confidence 4689999999996321 1257899999999999999999999999999999998 789
Q ss_pred CccEEEECCEeCCCCCHHH---HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcC
Q 020477 134 TEGSVVFKGENLLEMEPEE---RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210 (325)
Q Consensus 134 ~~G~I~~~g~~i~~~~~~~---~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (325)
++|+|+++|+++..++... .++..++||||+..++|..|+.+|..++... .....++..+++.+.++.+|
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev-------~Gv~~~er~~~a~~~l~~Vg 153 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEV-------QGVPKAEREERALEALELVG 153 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceee-------cCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999988754 3345689999999999999999998776543 22345677788999999999
Q ss_pred CccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhh
Q 020477 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFI 289 (325)
Q Consensus 211 l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~ 289 (325)
+. .+.++++.+ |||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.++.++ ++|||+||||++++..+
T Consensus 154 L~-~~~~~yp~e-LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlri 231 (386)
T COG4175 154 LE-GYADKYPNE-LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI 231 (386)
T ss_pred ch-hhhhcCccc-ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhc
Confidence 96 678888875 9999999999999999999999999999999999999999999998755 78999999999999998
Q ss_pred CCcEEEEEeCCEEEEEcCccH
Q 020477 290 KPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 290 ~~d~i~vl~~G~iv~~g~~~~ 310 (325)
.|||.+|++|+|++.|+|++
T Consensus 232 -G~rIaimkdG~ivQ~Gtp~e 251 (386)
T COG4175 232 -GDRIAIMKDGEIVQVGTPEE 251 (386)
T ss_pred -cceEEEecCCeEEEeCCHHH
Confidence 69999999999999999874
No 119
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=351.91 Aligned_cols=218 Identities=24% Similarity=0.340 Sum_probs=183.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||++.|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+ .+|++|+|.++|.++...+...++ .
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~p~~G~i~~~g~~~~~~~~~~~~-~ 76 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE--LSPDSGEVRLNGRPLADWSPAELA-R 76 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEEcccCCHHHhh-h
Confidence 6899999999964 5799999999999999999999999999999999998 679999999999988765544332 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|++|++.+++..++.+++...... ... ...+....+.++++.+++. +..++.+.+ |||||||||+|||
T Consensus 77 ~i~~~~q~~~~~~~~tv~e~l~~~~~~----~~~---~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGe~qrv~la~ 147 (258)
T PRK13548 77 RRAVLPQHSSLSFPFTVEEVVAMGRAP----HGL---SRAEDDALVAAALAQVDLA-HLAGRDYPQ-LSGGEQQRVQLAR 147 (258)
T ss_pred heEEEccCCcCCCCCCHHHHHHhhhcc----cCC---CcHHHHHHHHHHHHHcCCH-hHhcCCccc-CCHHHHHHHHHHH
Confidence 588999998887778888887653211 010 1122234567788999985 556777764 9999999999999
Q ss_pred HHH------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 237 LAV------LGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 237 aL~------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+ .+|++|||||||+|||+.+++.+.+.|+++. ++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARY-ADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-cCEEEEEECCEEEeeCCHH
Confidence 999 5999999999999999999999999999987 5688999999999999877 6999999999999988764
No 120
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-47 Score=349.30 Aligned_cols=223 Identities=22% Similarity=0.369 Sum_probs=183.2
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCCHHH
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~~~~ 152 (325)
++++++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+... .|++|+|.++|+++...+...
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 2 NKIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred ceEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 36999999999964 5799999999999999999999999999999999998321 147999999999987655444
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGER 229 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGqr 229 (325)
++ ..++|++|++.+++..++.+++....... ... ....+..+.+.++++.+++.. +.+++.+. +||||||
T Consensus 80 ~~-~~i~~v~q~~~~~~~~tv~enl~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LSgG~~ 152 (250)
T PRK14247 80 LR-RRVQMVFQIPNPIPNLSIFENVALGLKLN----RLV-KSKKELQERVRWALEKAQLWDEVKDRLDAPAG-KLSGGQQ 152 (250)
T ss_pred Hh-ccEEEEeccCccCCCCcHHHHHHHHHHhc----ccc-CCHHHHHHHHHHHHHHcCCCcchhhhhcCCcc-cCCHHHH
Confidence 33 46899999998888889999886543211 100 012233455778889998842 23566665 4999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARI-SDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-cCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999864 78999999999988777 6999999999999998765
No 121
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-48 Score=352.17 Aligned_cols=222 Identities=19% Similarity=0.305 Sum_probs=183.7
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+....+ .
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~-~ 76 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL--LTPQSGTVFLGDKPISMLSSRQLA-R 76 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCCcEEEECCEEhHHCCHHHHh-h
Confidence 6899999999964 5799999999999999999999999999999999998 679999999999987655544332 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+++.+++.+++..........++.. ..+....+.++++.+++. +..++.+.. |||||+|||+|||
T Consensus 77 ~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~lar 151 (255)
T PRK11231 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL---SAEDNARVNQAMEQTRIN-HLADRRLTD-LSGGQRQRAFLAM 151 (255)
T ss_pred heEEecccCCCCCCccHHHHHHhccchhhhhccCC---CHHHHHHHHHHHHHcCCH-HHHcCCccc-CCHHHHHHHHHHH
Confidence 58899999988887888888765321100001110 122234567788889985 456777764 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||++|||++.+..+ +|++++|++|+++..|+++
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 223 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRY-CDHLVVLANGHVMAQGTPE 223 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHh-cCEEEEEECCeEEEEcCHH
Confidence 99999999999999999999999999999999876688999999999998887 6999999999999988765
No 122
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-48 Score=386.28 Aligned_cols=228 Identities=26% Similarity=0.330 Sum_probs=190.1
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...+.....
T Consensus 3 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 3 TPYISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI--HEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred CceEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--cCCCccEEEECCEECCCCCHHHHH
Confidence 358999999999963 5799999999999999999999999999999999998 678999999999998776654433
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..++|+||++.+++.+++.+++...........+.......+...++.++++.+++. +..++.+.+ |||||||||+|
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LSgG~~qrv~i 156 (510)
T PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVAN-LSISHKQMLEI 156 (510)
T ss_pred HCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhh-CCHHHHHHHHH
Confidence 4468999999988888899888754321000000110011223345677889999996 567777765 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++..+ ||++++|++|++++.|+++
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~-~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRI-CDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEeeecchh
Confidence 9999999999999999999999999999999999977789999999999999887 6999999999999998875
No 123
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-48 Score=354.97 Aligned_cols=218 Identities=24% Similarity=0.328 Sum_probs=177.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC--CHHHHh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM--EPEERS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~--~~~~~~ 154 (325)
||+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++... .....
T Consensus 1 ml~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~~- 75 (271)
T PRK13638 1 MLATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL--LRPQKGAVLWQGKPLDYSKRGLLAL- 75 (271)
T ss_pred CeEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCccEEEECCEEcccccCCHHHH-
Confidence 5899999999963 5799999999999999999999999999999999998 679999999999987421 11222
Q ss_pred hccEEEeccCCcc-CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLFMSFQSPVE-IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~~~~Q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
+..++|++|++.. +...++.+++...... .+ ....+....+.++++.+++. ++.++.+. .||||||||++
T Consensus 76 ~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~~qrl~ 146 (271)
T PRK13638 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRN----LG---VPEAEITRRVDEALTLVDAQ-HFRHQPIQ-CLSHGQKKRVA 146 (271)
T ss_pred HhheEEEeeChhhccccccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCH-hHhcCCch-hCCHHHHHHHH
Confidence 2358899999753 2334556665443211 11 11233344567788999985 55667766 49999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++.+.++|+++.++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~-~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEI-SDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999876688999999999999877 6999999999999999764
No 124
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.5e-48 Score=342.83 Aligned_cols=212 Identities=24% Similarity=0.364 Sum_probs=175.8
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC-HHHHhhc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME-PEERSLA 156 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~-~~~~~~~ 156 (325)
++++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++.... .....+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL--EEPDSGTIIIDGLKLTDDKKNINELRQ 76 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCccchhHHHHHh
Confidence 478999999964 5799999999999999999999999999999999998 6799999999999875321 1112234
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|++|++.+++..++.+++....... .+ ....+....+.++++.+++. +..++.+.+ |||||+||++|||
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~ 148 (213)
T cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIKV---KG---MSKAEAEERALELLEKVGLA-DKADAYPAQ-LSGGQQQRVAIAR 148 (213)
T ss_pred cceEEecccccCCCCcHHHHHHhHHHHh---cC---CCHHHHHHHHHHHHHHcCCH-hHhhhCccc-cCHHHHHHHHHHH
Confidence 6889999999888889988876542110 01 11223334567788999986 456777764 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++.+..+ ||++++|++|++
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~-~d~i~~l~~g~i 213 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV-ADRVIFMDDGRI 213 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEeCCcC
Confidence 99999999999999999999999999999999976688999999999999877 699999999974
No 125
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-47 Score=354.61 Aligned_cols=221 Identities=24% Similarity=0.364 Sum_probs=183.6
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+++++||+++|++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+...+ .
T Consensus 2 ~~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~-~ 77 (277)
T PRK13652 2 HLIETRDLCYSYSG-SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI--LKPTSGSVLIRGEPITKENIREV-R 77 (277)
T ss_pred ceEEEEEEEEEeCC-CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHH-H
Confidence 46999999999963 24699999999999999999999999999999999998 68999999999999866544333 2
Q ss_pred ccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 156 AGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 156 ~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..+++++|++. .+...++.+++...... . .....+....+.++++.+++. +..++.+.. ||||||||++|
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----~---~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~Gq~qrl~l 148 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPIN----L---GLDEETVAHRVSSALHMLGLE-ELRDRVPHH-LSGGEKKRVAI 148 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHH----c---CCCHHHHHHHHHHHHHHCCCh-hHhcCCccc-CCHHHHHHHHH
Confidence 35789999974 23356888887543211 1 112333345677889999996 567777764 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~-~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEM-ADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEECCeEEEECCHHH
Confidence 99999999999999999999999999999999999765 88999999999999877 69999999999999998653
No 126
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-48 Score=350.13 Aligned_cols=214 Identities=21% Similarity=0.304 Sum_probs=179.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+...++ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~-~ 77 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL--IDPTEGSILIDGVDIKTIDVIDLR-R 77 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEhhhcChHHhh-h
Confidence 5899999999963 5799999999999999999999999999999999998 679999999999998665443333 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.+++++|++.+++ .++.+++...... .+ . ...++.++++.+++..+..++.+. .||||||||++|||
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~----~~-----~--~~~~~~~~l~~~~l~~~~~~~~~~-~LS~G~~qrl~la~ 144 (241)
T PRK14250 78 KIGMVFQQPHLFE-GTVKDNIEYGPML----KG-----E--KNVDVEYYLSIVGLNKEYATRDVK-NLSGGEAQRVSIAR 144 (241)
T ss_pred cEEEEecCchhch-hhHHHHHhcchhh----cC-----c--HHHHHHHHHHHcCCCHHHhhCCcc-cCCHHHHHHHHHHH
Confidence 5889999988776 5777775432110 00 0 123466778889985345666665 49999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 145 TLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI-GDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHh-CCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999998764 88999999999998877 6999999999999988765
No 127
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-47 Score=356.06 Aligned_cols=220 Identities=24% Similarity=0.359 Sum_probs=182.4
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC--CHHHH
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM--EPEER 153 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~--~~~~~ 153 (325)
++|+++|++++|++ ++.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++... .....
T Consensus 4 ~~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl--~~p~~G~i~i~g~~~~~~~~~~~~~ 80 (283)
T PRK13636 4 YILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI--LKPSSGRILFDGKPIDYSRKGLMKL 80 (283)
T ss_pred ceEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCccEEEECCEECCCCcchHHHH
Confidence 48999999999963 35799999999999999999999999999999999998 679999999999998421 12222
Q ss_pred hhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 154 SLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 154 ~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
+..++|+||++. .+...++.+++...... .+ ....+...++.++++.+++. +..++.+.. ||||||||+
T Consensus 81 -~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LS~G~~qrl 150 (283)
T PRK13636 81 -RESVGMVFQDPDNQLFSASVYQDVSFGAVN----LK---LPEDEVRKRVDNALKRTGIE-HLKDKPTHC-LSFGQKKRV 150 (283)
T ss_pred -HhhEEEEecCcchhhccccHHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHCCCh-hhhhCCccc-CCHHHHHHH
Confidence 245899999974 23346888887553211 11 12233345677889999996 567777764 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|||||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~-~dri~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLY-CDNVFVMKEGRVILQGNPK 227 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999764 89999999999998877 6999999999999999865
No 128
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-47 Score=350.46 Aligned_cols=212 Identities=23% Similarity=0.327 Sum_probs=178.9
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++.... .
T Consensus 1 ml~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~------~ 70 (255)
T PRK11248 1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF--VPYQHGSITLDGKPVEGPG------A 70 (255)
T ss_pred CEEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCC------C
Confidence 5899999999964 5799999999999999999999999999999999998 6799999999999875421 1
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.+++++|++.+++..++.+++...... .+ ....+...++.++++.+++. +..++.+. +|||||||||+|||
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGq~qrl~lar 141 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQL----AG---VEKMQRLEIAHQMLKKVGLE-GAEKRYIW-QLSGGQRQRVGIAR 141 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hHhhCChh-hCCHHHHHHHHHHH
Confidence 368899999888888998887654221 11 11223345677889999996 45667766 49999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEe--CCEEEEEcCc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIME--DGRIIKTGDA 308 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~--~G~iv~~g~~ 308 (325)
||+.+|++|||||||+|||+.+++.+.++|+++.+ +|.|||++|||++++..+ ||++++|+ +|++++.++.
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~-~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFM-ATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999999999854 588999999999999887 69999998 5999988654
No 129
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-47 Score=386.02 Aligned_cols=268 Identities=23% Similarity=0.321 Sum_probs=211.1
Q ss_pred hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEE
Q 020477 30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHA 109 (325)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~ 109 (325)
.|+.++......+.+...+.+|+.++++.+++....... ........++++||+|+|+++++++|+|+||+|++||++|
T Consensus 292 ~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~a 370 (574)
T PRK11160 292 EALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTS-TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVA 370 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-CCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEE
Confidence 467778888888899999999999988755432211111 1112235699999999997544579999999999999999
Q ss_pred EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC
Q 020477 110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG 189 (325)
Q Consensus 110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (325)
|+||||||||||+++|+|+ ++|++|+|.++|.++..++...++. .+++++|++.+|++ |..+|+....
T Consensus 371 ivG~sGsGKSTL~~ll~g~--~~p~~G~I~i~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~~-ti~~Ni~~~~-------- 438 (574)
T PRK11160 371 LLGRTGCGKSTLLQLLTRA--WDPQQGEILLNGQPIADYSEAALRQ-AISVVSQRVHLFSA-TLRDNLLLAA-------- 438 (574)
T ss_pred EECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEhhhCCHHHHHh-heeEEcccchhhcc-cHHHHhhcCC--------
Confidence 9999999999999999998 7899999999999999888766543 58899999998875 7788765431
Q ss_pred CCCCChHHHHHhHHHHHHhcCCcc-----cccccc---CCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020477 190 QPEIGPIEFYAYLYPKLERLSMKT-----DFLNRN---VNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261 (325)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~---~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~ 261 (325)
++.+++ .+.++++.+++.. +-++.. -+..||||||||++|||||+++|++|||||||++||+++++.
T Consensus 439 -~~~~~~----~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~ 513 (574)
T PRK11160 439 -PNASDE----ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ 513 (574)
T ss_pred -CccCHH----HHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 222222 2344455555531 112222 233599999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
+.+.|.++. +++|+|+|||+++.+.. +|+|++|++|++++.|+. .++++.+|+|
T Consensus 514 i~~~l~~~~-~~~tviiitHr~~~~~~--~d~i~~l~~G~i~~~g~~--~~l~~~~g~y 567 (574)
T PRK11160 514 ILELLAEHA-QNKTVLMITHRLTGLEQ--FDRICVMDNGQIIEQGTH--QELLAQQGRY 567 (574)
T ss_pred HHHHHHHHc-CCCEEEEEecChhHHHh--CCEEEEEeCCeEEEeCCH--HHHHhcCcHH
Confidence 999999985 47899999999988764 699999999999999975 4677777754
No 130
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-47 Score=352.02 Aligned_cols=208 Identities=21% Similarity=0.289 Sum_probs=177.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. .
T Consensus 10 ~~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~-----~- 79 (257)
T PRK11247 10 GTPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL--ETPSAGELLAGTAPLAE-----A- 79 (257)
T ss_pred CCcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEHHH-----h-
Confidence 467999999999964 5799999999999999999999999999999999998 67999999999987532 1
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..++|++|++.+++..++.+++..... . ....++.++++.+++. +..++.+. +|||||||||+|
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~----~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGqkqrl~l 144 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK---------G----QWRDAALQALAAVGLA-DRANEWPA-ALSGGQKQRVAL 144 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc---------c----hHHHHHHHHHHHcCCh-hHhcCChh-hCCHHHHHHHHH
Confidence 2358899999988888899888755321 0 0123466788999996 45667766 499999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .+.|||+||||++++..+ ||++++|++|++++.++.
T Consensus 145 araL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~-~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAM-ADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEeeccc
Confidence 9999999999999999999999999999999999854 478999999999998877 699999999999988764
No 131
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.1e-47 Score=387.17 Aligned_cols=273 Identities=20% Similarity=0.293 Sum_probs=207.9
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.++...... .........++++||+|+|+++++++|+|+||+|++||.
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~ 371 (582)
T PRK11176 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKT 371 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCE
Confidence 345777777777888888999999988876443321111 111112336999999999975456799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
+||+|+||||||||+++|+|+ ++|++|+|.++|.++..++...++. .++|++|++.+|++ |..+|+..+.
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~~~~-~i~~v~Q~~~lf~~-Ti~~Ni~~~~------ 441 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRF--YDIDEGEILLDGHDLRDYTLASLRN-QVALVSQNVHLFND-TIANNIAYAR------ 441 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhc--cCCCCceEEECCEEhhhcCHHHHHh-hceEEccCceeecc-hHHHHHhcCC------
Confidence 999999999999999999998 7899999999999999888766543 48899999998874 7888875431
Q ss_pred cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
....++++.++. +.+.++.+..+.+..-..-+.+||||||||++|||||+++|++||||||||+||+++++.+
T Consensus 442 --~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i 519 (582)
T PRK11176 442 --TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519 (582)
T ss_pred --CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence 011222322221 2233444432212221222345999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~ 319 (325)
++.|.++.+ ++|+|+|||+++.+.. +|+|++|++|++++.|+++ ++++..+.
T Consensus 520 ~~~l~~~~~-~~tvI~VtHr~~~~~~--~D~Ii~l~~g~i~e~g~~~--~l~~~~~~ 571 (582)
T PRK11176 520 QAALDELQK-NRTSLVIAHRLSTIEK--ADEILVVEDGEIVERGTHA--ELLAQNGV 571 (582)
T ss_pred HHHHHHHhC-CCEEEEEecchHHHHh--CCEEEEEECCEEEEeCCHH--HHHhCCCh
Confidence 999999753 5899999999987764 6999999999999999764 55666653
No 132
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-47 Score=353.85 Aligned_cols=222 Identities=26% Similarity=0.427 Sum_probs=184.9
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++++++|++++|+++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++...+....
T Consensus 4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL--LKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred cceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCcCCHHHH
Confidence 3468999999999964346799999999999999999999999999999999998 67999999999999865544333
Q ss_pred hhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 154 SLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 154 ~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
+ ..++|++|++. .++..|+.+++...... .. ....+....+.++++.+++. +..++.+.. ||||||||+
T Consensus 82 ~-~~i~~v~q~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl 151 (271)
T PRK13632 82 R-KKIGIIFQNPDNQFIGATVEDDIAFGLEN----KK---VPPKKMKDIIDDLAKKVGME-DYLDKEPQN-LSGGQKQRV 151 (271)
T ss_pred h-cceEEEEeCHHHhcCcccHHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHcCCH-HHhhCCccc-CCHHHHHHH
Confidence 3 35889999974 56667888887654221 01 11233345577889999996 567777764 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|||||+.+|++|||||||+|||+.+++.++++|++++++ +.|||++|||++.+. . ||++++|++|++++.|+++
T Consensus 152 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~-~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-L-ADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-h-CCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999999998765 589999999999885 5 7999999999999988764
No 133
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-47 Score=354.98 Aligned_cols=219 Identities=21% Similarity=0.341 Sum_probs=179.7
Q ss_pred EEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC----H
Q 020477 78 LQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME----P 150 (325)
Q Consensus 78 l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~----~ 150 (325)
|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+ .
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL--HVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccCH
Confidence 88999999996421 3699999999999999999999999999999999998 6899999999999886532 1
Q ss_pred HHHhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020477 151 EERSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE 228 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq 228 (325)
... +..++|++|++ .+++ .++.+++.+.... .+ ....+....+.++++.+++.....++.+.+ |||||
T Consensus 81 ~~~-~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgG~ 150 (280)
T PRK13649 81 KQI-RKKVGLVFQFPESQLFE-ETVLKDVAFGPQN----FG---VSQEEAEALAREKLALVGISESLFEKNPFE-LSGGQ 150 (280)
T ss_pred HHH-HhheEEEeeChhhhhcc-ccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCChhhhhCCccc-CCHHH
Confidence 222 23588999997 3444 5888887643211 11 112333445677888999853455677664 99999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||++++|++|++++.|++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY-ADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh-CCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976688999999999999887 699999999999998876
Q ss_pred c
Q 020477 309 S 309 (325)
Q Consensus 309 ~ 309 (325)
+
T Consensus 230 ~ 230 (280)
T PRK13649 230 K 230 (280)
T ss_pred H
Confidence 4
No 134
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.9e-47 Score=350.28 Aligned_cols=224 Identities=25% Similarity=0.342 Sum_probs=181.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe-----CCCCC
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN-----LLEME 149 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~-----i~~~~ 149 (325)
.++|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|++ +...+
T Consensus 4 ~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~i~~~~ 79 (258)
T PRK11701 4 QPLLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR--LAPDAGEVHYRMRDGQLRDLYALS 79 (258)
T ss_pred CceEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCccccccccccCC
Confidence 358999999999964 5799999999999999999999999999999999998 67999999999998 66554
Q ss_pred HHHH---hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020477 150 PEER---SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF 224 (325)
Q Consensus 150 ~~~~---~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 224 (325)
...+ .+..++|++|++. +++..++.+++...... .... ...+....+.++++.+++.....++.+.+ |
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-L 152 (258)
T PRK11701 80 EAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMA----VGAR--HYGDIRATAGDWLERVEIDAARIDDLPTT-F 152 (258)
T ss_pred HHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHH----hccC--cHHHHHHHHHHHHHHcCCChhHHhCCCcc-C
Confidence 4332 2346899999974 45556666665432211 1110 11223445677889999853356677664 9
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++|||++++..+ ||++++|++|+++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~-~d~i~~l~~g~i~ 231 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL-AHRLLVMKQGRVV 231 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh-cCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998754 88999999999999877 6999999999999
Q ss_pred EEcCccH
Q 020477 304 KTGDASI 310 (325)
Q Consensus 304 ~~g~~~~ 310 (325)
+.|+++.
T Consensus 232 ~~~~~~~ 238 (258)
T PRK11701 232 ESGLTDQ 238 (258)
T ss_pred EeCCHHH
Confidence 9987653
No 135
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=353.19 Aligned_cols=226 Identities=19% Similarity=0.228 Sum_probs=186.7
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
...+|+++||+++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+...+
T Consensus 4 ~~~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 4 SVARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL--MTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cccEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCcEEEECCEEhhhCCHHHH
Confidence 3558999999999974 5799999999999999999999999999999999998 67899999999998876554443
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
+ ..++|+||++.+++..++.+++........ .............+.++++.+++. +..++.+.. ||||||||++
T Consensus 80 ~-~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~Gq~qrv~ 153 (265)
T PRK10253 80 A-RRIGLLAQNATTPGDITVQELVARGRYPHQ---PLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDT-LSGGQRQRAW 153 (265)
T ss_pred h-hheEEeeccCcCCCCCcHHHHHHhCccccc---ccccCCCHHHHHHHHHHHHHcCCH-HHhcCCccc-CChHHHHHHH
Confidence 3 358899999988888888887754311100 000000122234567788999996 567777764 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||||+.+|++|||||||+|||+.+++.+.+.|.++.++ |.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRY-ASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999998764 88999999999998887 69999999999999998653
No 136
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.2e-47 Score=348.63 Aligned_cols=219 Identities=24% Similarity=0.371 Sum_probs=182.3
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC--------
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME-------- 149 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~-------- 149 (325)
|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL--EPIDEGQIQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccccccc
Confidence 478999999964 5799999999999999999999999999999999998 6799999999999886442
Q ss_pred --HH--HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020477 150 --PE--ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS 225 (325)
Q Consensus 150 --~~--~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 225 (325)
.. ...+..+++++|++.+++..++.+++....... .+ ....+....+.++++.+++. +..++.+. +||
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LS 148 (252)
T TIGR03005 77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV---LG---MARAEAEKRAMELLDMVGLA-DKADHMPA-QLS 148 (252)
T ss_pred cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHcCCh-hHhhcChh-hcC
Confidence 11 112346889999998888889988876532110 01 11223334577889999995 56667765 499
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
|||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++|||++.+..+ +|++++|++|++++
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREF-ADRVCFFDKGRIVE 227 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh-cCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 88999999999998776 69999999999999
Q ss_pred EcCcc
Q 020477 305 TGDAS 309 (325)
Q Consensus 305 ~g~~~ 309 (325)
.|+.+
T Consensus 228 ~g~~~ 232 (252)
T TIGR03005 228 QGKPD 232 (252)
T ss_pred eCCHH
Confidence 98764
No 137
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-47 Score=347.70 Aligned_cols=223 Identities=22% Similarity=0.360 Sum_probs=179.9
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CC--CCccEEEECCEeCCCC--
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YE--VTEGSVVFKGENLLEM-- 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~--p~~G~I~~~g~~i~~~-- 148 (325)
..|+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.. ++ |++|+|.++|+++...
T Consensus 3 ~~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 3 SPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred CCcEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 4678999999999963 579999999999999999999999999999999999731 12 5899999999988542
Q ss_pred CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020477 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFS 225 (325)
Q Consensus 149 ~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LS 225 (325)
..... +..++|++|++.+++ .++.+++....... +.. .......++.+.++.+++.. +..++.+. .||
T Consensus 81 ~~~~~-~~~i~~v~q~~~~~~-~tv~enl~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS 151 (253)
T PRK14242 81 DVVEL-RRRVGMVFQKPNPFP-KSIFENVAYGLRVN----GVK--DKAYLAERVERSLRHAALWDEVKDRLHESAL-GLS 151 (253)
T ss_pred CHHHH-hhcEEEEecCCCCCc-CcHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHHHcCCchhhhHHhhCCcc-cCC
Confidence 22222 246899999998887 48888876543211 110 11223345667788888742 23455565 499
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
|||||||+|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ +|++++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~-~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARV-SDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHh-CCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999854 68999999999998877 699999999999999
Q ss_pred cCcc
Q 020477 306 GDAS 309 (325)
Q Consensus 306 g~~~ 309 (325)
|+++
T Consensus 230 g~~~ 233 (253)
T PRK14242 230 GPTE 233 (253)
T ss_pred CCHH
Confidence 8764
No 138
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-47 Score=348.65 Aligned_cols=223 Identities=23% Similarity=0.330 Sum_probs=180.3
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCCH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~~ 150 (325)
..++|+++|++++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+... .|++|+|.++|+++.....
T Consensus 9 ~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 9 AQPQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred cceeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 4568999999999963 5799999999999999999999999999999999998321 1489999999998754321
Q ss_pred -HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCCCh
Q 020477 151 -EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGFSG 226 (325)
Q Consensus 151 -~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~LSg 226 (325)
....+..++|++|++.+++ .++.+++.+.... .+. ...+....+.++++.+++. .+.+++.+. .|||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~----~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LSg 157 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRI----HGA---NKKDLDGVVENALRSAALWDETSDRLKSPAL-SLSG 157 (258)
T ss_pred hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHH----cCC---CHHHHHHHHHHHHHHcCCCcchhhhhcCChh-hCCH
Confidence 1122346899999998877 7888887654211 111 1222334567788888873 134566665 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||+|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARI-SDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHh-CCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 78999999999998877 6999999999999998
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+++
T Consensus 236 ~~~ 238 (258)
T PRK14268 236 QTR 238 (258)
T ss_pred CHH
Confidence 765
No 139
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.2e-47 Score=349.59 Aligned_cols=221 Identities=22% Similarity=0.322 Sum_probs=184.1
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++|+++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+...++ ..
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~~ 76 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA--LRPDAGTVDLAGVDLHGLSRRARA-RR 76 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCEEcccCCHHHHh-hh
Confidence 689999999964 5799999999999999999999999999999999998 679999999999998766554433 35
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++|++..+...++.+++............. ...+...++.++++.+++. +..++.+.+ |||||+||++||||
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~la~a 151 (256)
T TIGR03873 77 VALVEQDSDTAVPLTVRDVVALGRIPHRSLWAG---DSPHDAAVVDRALARTELS-HLADRDMST-LSGGERQRVHVARA 151 (256)
T ss_pred eEEecccCccCCCCCHHHHHHhcchhhhhhccC---CCHHHHHHHHHHHHHcCcH-hhhcCCccc-CCHHHHHHHHHHHH
Confidence 889999987777788888876542111000010 1112234577788999985 567777765 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||++++|++|++++.|+.+
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~ 222 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASY-CDHVVVLDGGRVVAAGPPR 222 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEeCCCEEEecCHH
Confidence 9999999999999999999999999999999976688999999999999877 6999999999999998865
No 140
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-48 Score=354.96 Aligned_cols=217 Identities=25% Similarity=0.347 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH---hh
Q 020477 79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER---SL 155 (325)
Q Consensus 79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~---~~ 155 (325)
.++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... ..
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl--~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 101 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL--IEPTSGKVLIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccChhhhhhhhc
Confidence 56799999964 6799999999999999999999999999999999998 67999999999999876544321 22
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|++|++.+++..++.+++...... .+ ....+...++.++++.+++. +..++.+.+ |||||||||+||
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~Gq~qrv~lA 172 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEV----QG---VPRAEREERAAEALELVGLE-GWEHKYPDE-LSGGMQQRVGLA 172 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCH-hHhhCCccc-CCHHHHHHHHHH
Confidence 4689999999888888999887654321 11 11222334567789999996 567777765 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+.+|++|||||||+|||+.+++.+.+.|.++.++ |.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~-~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRL-GDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999998654 78999999999998877 6999999999999988764
No 141
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-47 Score=347.03 Aligned_cols=223 Identities=22% Similarity=0.351 Sum_probs=181.1
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCC--C
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLL--E 147 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~--~ 147 (325)
.++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++. .
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 2 KFAIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL--LELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred cceEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCcccCCCCceEEEECCEEccccc
Confidence 347999999999964 5799999999999999999999999999999999998 444 5999999999886 2
Q ss_pred CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCC
Q 020477 148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGF 224 (325)
Q Consensus 148 ~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~L 224 (325)
...... +..+++++|++.+++..++.+++....... ... ....+....+.++++.+++.. ...++.+. +|
T Consensus 78 ~~~~~~-~~~i~~~~q~~~~~~~~tv~enl~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~L 150 (253)
T PRK14267 78 VDPIEV-RREVGMVFQYPNPFPHLTIYDNVAIGVKLN----GLV-KSKKELDERVEWALKKAALWDEVKDRLNDYPS-NL 150 (253)
T ss_pred cChHHH-hhceeEEecCCccCCCCcHHHHHHHHHHhc----Ccc-CCHHHHHHHHHHHHHHcCCccchhhhhccChh-hC
Confidence 222222 236889999999888889998876543211 100 012223345667788888732 23456665 49
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
|||||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++
T Consensus 151 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~ 228 (253)
T PRK14267 151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARV-SDYVAFLYLGKLIE 228 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhh-CCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999865 58999999999998877 69999999999999
Q ss_pred EcCccH
Q 020477 305 TGDASI 310 (325)
Q Consensus 305 ~g~~~~ 310 (325)
.|+++.
T Consensus 229 ~~~~~~ 234 (253)
T PRK14267 229 VGPTRK 234 (253)
T ss_pred eCCHHH
Confidence 988653
No 142
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-47 Score=350.23 Aligned_cols=221 Identities=22% Similarity=0.325 Sum_probs=182.5
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++++++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+....+
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~ 82 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI--EKVKSGEIFYNNQAITDDNFEKLR 82 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHHH
Confidence 568999999999975334699999999999999999999999999999999998 679999999999998765544333
Q ss_pred hccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
..++|++|++. .++..++.+++.+.... .+ ....+....+.++++.+++. +..++.+.. ||||||||++
T Consensus 83 -~~i~~v~q~~~~~~~~~~v~~~~~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~ 152 (269)
T PRK13648 83 -KHIGIVFQNPDNQFVGSIVKYDVAFGLEN----HA---VPYDEMHRRVSEALKQVDML-ERADYEPNA-LSGGQKQRVA 152 (269)
T ss_pred -hheeEEEeChHHhcccccHHHHHHhhHHh----cC---CCHHHHHHHHHHHHHHcCCc-hhhhCCccc-CCHHHHHHHH
Confidence 35889999985 56666776665443211 11 11223344567788999986 566777764 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++|||++++. . +|++++|++|++++.|+++
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~-~-~d~i~~l~~G~i~~~g~~~ 227 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAM-E-ADHVIVMNKGTVYKEGTPT 227 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHh-c-CCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999998754 789999999999886 4 6999999999999998865
No 143
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-47 Score=351.34 Aligned_cols=221 Identities=27% Similarity=0.378 Sum_probs=181.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH-HHHhh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP-EERSL 155 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~-~~~~~ 155 (325)
+|+++||+++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++..... .....
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (275)
T PRK13639 1 ILETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI--LKPTSGEVLIKGEPIKYDKKSLLEVR 77 (275)
T ss_pred CEEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEECccccchHHHHH
Confidence 5889999999963 35699999999999999999999999999999999998 67999999999998852211 11123
Q ss_pred ccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 156 AGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 156 ~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..++|++|++. .+...++.+++...... .+ ....+...++.++++.+++. ++.++.+.+ |||||+||++|
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~e~i~~~~~~----~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~-LS~Gq~qrv~l 148 (275)
T PRK13639 78 KTVGIVFQNPDDQLFAPTVEEDVAFGPLN----LG---LSKEEVEKRVKEALKAVGME-GFENKPPHH-LSGGQKKRVAI 148 (275)
T ss_pred hheEEEeeChhhhhccccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHCCCc-hhhcCChhh-CCHHHHHHHHH
Confidence 45889999973 33345888887543211 11 12233345677889999996 567777765 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVY-ADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999976689999999999998877 69999999999999998653
No 144
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-47 Score=340.38 Aligned_cols=210 Identities=24% Similarity=0.328 Sum_probs=175.3
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.. +..
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~~~~~---~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF--ETPQSGRVLINGVDVTAAPPA---DRP 71 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcCcCCHh---Hcc
Confidence 478999999963 33 399999999999999999999999999999998 679999999999998765432 245
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++..++.+++....... .. . ..+...++.++++.+++. +..++.+. +||||||||++||||
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~---~~---~-~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrv~ia~a 142 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPG---LK---L-TAEDRQAIEVALARVGLA-GLEKRLPG-ELSGGERQRVALARV 142 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccc---cC---c-cHHHHHHHHHHHHHcCCH-HHHhCCcc-cCCHHHHHHHHHHHH
Confidence 889999999888889988876542110 00 0 112234577889999996 45667765 499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|+.+|++|||||||+|||+.+++.+.+.|++++++ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL-AQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhh-hCEEEEEECCEEeecC
Confidence 99999999999999999999999999999998754 88999999999999887 6999999999998653
No 145
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=381.35 Aligned_cols=224 Identities=25% Similarity=0.372 Sum_probs=188.3
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.....+
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (501)
T PRK10762 3 ALLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI--YTRDAGSILYLGKEVTFNGPKSSQE 78 (501)
T ss_pred ceEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHHHh
Confidence 58999999999963 6799999999999999999999999999999999998 6799999999999986554433333
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..+++++|++.+++.+++.+++.+...... ... .....+...++.++++.+++. +..++.+.+ |||||||||+||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~la 153 (501)
T PRK10762 79 AGIGIIHQELNLIPQLTIAENIFLGREFVN-RFG--RIDWKKMYAEADKLLARLNLR-FSSDKLVGE-LSIGEQQMVEIA 153 (501)
T ss_pred CCEEEEEcchhccCCCcHHHHhhhcccccc-ccC--ccCHHHHHHHHHHHHHHcCCC-CCccCchhh-CCHHHHHHHHHH
Confidence 468999999988888999998865421100 000 111223345677889999996 556777765 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+.+|++|||||||+|||+.+++.++++|++++++|.|||+||||++++..+ ||++++|++|++++.|+++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~-~d~i~~l~~G~i~~~~~~~ 226 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEI-CDDVTVFRDGQFIAEREVA 226 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEeCCEEEEecCcC
Confidence 999999999999999999999999999999999976788999999999999887 6999999999999988765
No 146
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.9e-47 Score=365.25 Aligned_cols=207 Identities=24% Similarity=0.332 Sum_probs=176.8
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE----eCCCCCHHHH---hhccEEEeccC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE----NLLEMEPEER---SLAGLFMSFQS 164 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~----~i~~~~~~~~---~~~~i~~~~Q~ 164 (325)
..+|+|+||+|++||+++|+|+||||||||+|+|+|+ ++|++|+|.++|+ ++...+.... ++..++|+||+
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl--~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL--NPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 4689999999999999999999999999999999998 7899999999997 4544444332 23469999999
Q ss_pred CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCE
Q 020477 165 PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244 (325)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~l 244 (325)
+.+++..|+.+|+.+..... + ....+...++.++++.+++. ++.++.+.+ |||||||||+|||||+.+|+|
T Consensus 115 ~~l~p~~Tv~eNi~~~~~~~----g---~~~~~~~~~a~e~le~vgL~-~~~~~~~~~-LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 115 FALMPWLTVEENVAFGLEMQ----G---MPEAERRKRVDEQLELVGLA-QWADKKPGE-LSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CcCCCCCcHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999987653211 1 12234445678889999996 567777765 999999999999999999999
Q ss_pred EEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 245 AILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 245 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||||||++||+.++..+.+.|.++.++ ++|||+||||++++..+ +|+|++|++|++++.|+++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l-~DrI~vl~~G~iv~~g~~~e 251 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKI-GNRIAIMEGGRIIQHGTPEE 251 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999764 89999999999999887 69999999999999998753
No 147
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.2e-47 Score=381.43 Aligned_cols=218 Identities=23% Similarity=0.380 Sum_probs=188.8
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+
T Consensus 8 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 8 APPLLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI--VPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred CCceEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHHH
Confidence 3458999999999964 5799999999999999999999999999999999998 67999999999999876665544
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
++.+++|++|++.+++.+++.+++.+... . ..+...++.++++.+++. +..++.+.+ |||||||||+
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-------~----~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~ 150 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLP-------K----RQASMQKMKQLLAALGCQ-LDLDSSAGS-LEVADRQIVE 150 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhcccc-------c----chHHHHHHHHHHHHcCCC-ccccCChhh-CCHHHHHHHH
Confidence 44568999999988888999888754321 0 112234577889999996 566777765 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++++.++|++++++|.|||+||||++++..+ ||++++|++|++++.|+++
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~g~~~ 225 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQL-ADRISVMRDGTIALSGKTA 225 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEecChH
Confidence 99999999999999999999999999999999999977789999999999999887 6999999999999998765
No 148
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.8e-48 Score=342.97 Aligned_cols=211 Identities=26% Similarity=0.312 Sum_probs=170.1
Q ss_pred EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020477 79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL 158 (325)
Q Consensus 79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 158 (325)
+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++. .. +..+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~-----~~-~~~i 70 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL--LKPTSGSIRVFGKPLE-----KE-RKRI 70 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCccHH-----HH-Hhhe
Confidence 36899999964 5799999999999999999999999999999999998 6799999999998753 12 2358
Q ss_pred EEeccCCccC--CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 159 FMSFQSPVEI--PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 159 ~~~~Q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
+|++|++.++ ...++.+++....... .........+...++.++++.+++. +..++.+.+ ||||||||++|||
T Consensus 71 ~~v~q~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~la~ 145 (213)
T cd03235 71 GYVPQRRSIDRDFPISVRDVVLMGLYGH---KGLFRRLSKADKAKVDEALERVGLS-ELADRQIGE-LSGGQQQRVLLAR 145 (213)
T ss_pred EEeccccccccCCCCcHHHHHHhccccc---cccccCCCHHHHHHHHHHHHHcCCH-HHHhCCccc-CCHHHHHHHHHHH
Confidence 8999998653 2368888876532110 0000001122334577789999996 566777764 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||++++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~-~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY-FDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999876788999999999999887 6999999876 55543
No 149
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.8e-47 Score=387.00 Aligned_cols=269 Identities=19% Similarity=0.289 Sum_probs=207.9
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.++..... .........++++|++++|++ ++++|+|+||+|++||.
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~-~~~il~~i~l~i~~Ge~ 369 (592)
T PRK10790 294 LNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN---DDRPLQSGRIDIDNVSFAYRD-DNLVLQNINLSVPSRGF 369 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---CccCCCCCeEEEEEEEEEeCC-CCceeeceeEEEcCCCE
Confidence 45677777778888999999999999887654332111 111112346999999999974 35799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
+||+|+||||||||+++|+|+ ++|++|+|.+||.++..++....+. .+++++|++.+|++ |..+|+....
T Consensus 370 iaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~idg~~i~~~~~~~l~~-~i~~v~Q~~~lF~~-Ti~~NI~~~~------ 439 (592)
T PRK10790 370 VALVGHTGSGKSTLASLLMGY--YPLTEGEIRLDGRPLSSLSHSVLRQ-GVAMVQQDPVVLAD-TFLANVTLGR------ 439 (592)
T ss_pred EEEECCCCCCHHHHHHHHhcc--cCCCCceEEECCEEhhhCCHHHHHh-heEEEccCCccccc-hHHHHHHhCC------
Confidence 999999999999999999998 8899999999999999888776543 58899999999986 8888875531
Q ss_pred cCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
..++++..+ .+.+.++.+..+.+..-..-+..||||||||++|||||+++|++||||||||+||+++++.+
T Consensus 440 ----~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i 515 (592)
T PRK10790 440 ----DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515 (592)
T ss_pred ----CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 112222211 12233333322111111222346999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~ 319 (325)
.+.|+++.+ ++|+|+|||+++.+.. +|+|++|++|++++.|+++ ++++.++.
T Consensus 516 ~~~l~~~~~-~~tvIivtHr~~~l~~--~D~ii~l~~G~i~~~G~~~--~L~~~~~~ 567 (592)
T PRK10790 516 QQALAAVRE-HTTLVVIAHRLSTIVE--ADTILVLHRGQAVEQGTHQ--QLLAAQGR 567 (592)
T ss_pred HHHHHHHhC-CCEEEEEecchHHHHh--CCEEEEEECCEEEEEcCHH--HHHhCCCH
Confidence 999999864 5899999999988765 6999999999999999765 44555553
No 150
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-47 Score=352.79 Aligned_cols=223 Identities=25% Similarity=0.345 Sum_probs=181.4
Q ss_pred CCcEEEEEEEEEECCC----cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH
Q 020477 75 QPLLQVTGLTAVIAES----KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~----~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 150 (325)
.++++++||+++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++.....
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LIPSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEecccccc
Confidence 4589999999999642 25699999999999999999999999999999999998 67999999999998865332
Q ss_pred HHHhhccEEEeccCCcc-CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 151 EERSLAGLFMSFQSPVE-IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
....+..++++||++.. +...++.+++.+.... .+ ....+....+.++++.+++. ++.++.+.. ||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LS~G~~ 150 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPEN----LG---IPPEEIRERVDESLKKVGMY-EYRRHAPHL-LSGGQK 150 (280)
T ss_pred HHHHhhheEEEecChhhhhccccHHHHHHhhHhh----cC---CCHHHHHHHHHHHHHHCCCH-hHhhCCccc-CCHHHH
Confidence 12123458899999742 2234666666543211 11 12233345677889999996 567777765 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++|||++.+.. ||++++|++|++++.|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~--~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE--ADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc--CCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999754 8999999999998864 699999999999999986
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 229 ~~ 230 (280)
T PRK13633 229 KE 230 (280)
T ss_pred HH
Confidence 53
No 151
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-47 Score=353.06 Aligned_cols=221 Identities=21% Similarity=0.344 Sum_probs=184.3
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCc---cEEEECCEeCCCCCHH
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE---GSVVFKGENLLEMEPE 151 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~---G~I~~~g~~i~~~~~~ 151 (325)
..+|+++|++++|++..+++|+++||+|++||+++|+||||||||||+++|+|+ ++|++ |+|.++|+++...+..
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~--~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL--LLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc--cCCCCCCCcEEEECCEECCcCCHH
Confidence 458999999999964335699999999999999999999999999999999998 66777 8999999998765443
Q ss_pred HHhhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 152 ERSLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
..+ ..++|+||++. .++..++.+++.+.... . ....++..+++.++++.+++. +..++.+. .|||||+|
T Consensus 81 ~~~-~~ig~v~q~~~~~~~~~tv~enl~~~~~~----~---~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~-~LS~G~~q 150 (282)
T PRK13640 81 DIR-EKVGIVFQNPDNQFVGATVGDDVAFGLEN----R---AVPRPEMIKIVRDVLADVGML-DYIDSEPA-NLSGGQKQ 150 (282)
T ss_pred HHH-hheEEEEECHHHhhccCCHHHHHHhhHHh----C---CCCHHHHHHHHHHHHHHCCCh-hHhcCCcc-cCCHHHHH
Confidence 332 35889999984 56667888887543211 1 112334445677889999996 56777776 49999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++|||++++. . ||++++|++|++++.|+++
T Consensus 151 rv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~-~d~i~~l~~G~i~~~g~~~ 228 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-M-ADQVLVLDDGKLLAQGSPV 228 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-h-CCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998754 889999999999885 5 7999999999999999875
No 152
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-47 Score=380.92 Aligned_cols=224 Identities=25% Similarity=0.325 Sum_probs=188.5
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC--CccEEEECCEeCCCCCHHH
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--TEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p--~~G~I~~~g~~i~~~~~~~ 152 (325)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++| ++|+|.++|+++...+...
T Consensus 3 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 3 EYLLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV--YPHGTYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred CceEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCCCeEEEECCEECCCCCHHH
Confidence 358999999999963 5799999999999999999999999999999999998 454 8999999999987665443
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
..+..++|+||++.+++.+++.+++.+..... ..+ .....+...++.++++.+++. +..++.+.+ |||||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGqkqrv 152 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEIT--PGG--IMDYDAMYLRAQKLLAQLKLD-INPATPVGN-LGLGQQQLV 152 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhccccc--ccC--CcCHHHHHHHHHHHHHHcCCC-CCcccchhh-CCHHHHHHH
Confidence 33456899999998888899999876542110 000 011223345677889999995 567777765 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|||||+.+|++|||||||++||+.++..+.++|.+++++|.|||+||||++++..+ ||++++|++|+++..|+++
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~-~d~v~~l~~G~i~~~~~~~ 228 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAI-SDTICVIRDGRHIGTRPAA 228 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHh-cCEEEEEECCEEeeecccc
Confidence 999999999999999999999999999999999999976788999999999999887 6999999999999998875
No 153
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-47 Score=345.84 Aligned_cols=222 Identities=19% Similarity=0.310 Sum_probs=179.3
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCCCC
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLLEM 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~~~ 148 (325)
..++++++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++| ++|+|.++|+++...
T Consensus 4 ~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 4 NEAIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM--NDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred CCceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc--ccCCcCCCCceEEEECCEecccc
Confidence 3458999999999964 5799999999999999999999999999999999998 444 589999999987532
Q ss_pred C-HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCC
Q 020477 149 E-PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGF 224 (325)
Q Consensus 149 ~-~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~L 224 (325)
. .....+..++|++|++.++. .++.+++.+..... +.. ...+....+.+.++.+++. .+..++.+. +|
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~L 151 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIH----GTK--DKKKLDEIVEQSLKKSALWNEVKDKLNTNAL-SL 151 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHHhCCchhhHHHHhCCcc-cC
Confidence 1 11122346899999988774 78988876543211 111 1222334566778888763 134566665 49
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
||||||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+ +|++++|++|++++
T Consensus 152 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~-~d~i~~l~~G~i~~ 229 (254)
T PRK14273 152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRI-SDRTAFFLNGCIEE 229 (254)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-CCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999964 68999999999998877 69999999999999
Q ss_pred EcCcc
Q 020477 305 TGDAS 309 (325)
Q Consensus 305 ~g~~~ 309 (325)
.|+++
T Consensus 230 ~g~~~ 234 (254)
T PRK14273 230 ESSTD 234 (254)
T ss_pred eCCHH
Confidence 98765
No 154
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3e-47 Score=349.75 Aligned_cols=229 Identities=20% Similarity=0.227 Sum_probs=184.2
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC---ccEEEECCEeCCCCC--
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT---EGSVVFKGENLLEME-- 149 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~---~G~I~~~g~~i~~~~-- 149 (325)
.++|+++||++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+ ++|+ +|+|.++|+++....
T Consensus 2 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 2 QTIIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL--ITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred CcEEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCCCceEEEECCEeccccccc
Confidence 358999999999963 6799999999999999999999999999999999998 4554 599999999875432
Q ss_pred --HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC-CCCCChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020477 150 --PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG-QPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG 226 (325)
Q Consensus 150 --~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 226 (325)
........++|+||++.+++.+++.+++............ .......+....+.++++.+++. +..++.+.. |||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~ 155 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVST-LSG 155 (262)
T ss_pred chhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccc-cCH
Confidence 1112234588999999888888998887653210000000 00000122335677889999996 567777765 999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .|.|||++|||++++..+ ||++++|++|++++.
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~-~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRY-CERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999975 488999999999998877 699999999999999
Q ss_pred cCccH
Q 020477 306 GDASI 310 (325)
Q Consensus 306 g~~~~ 310 (325)
|+++.
T Consensus 235 g~~~~ 239 (262)
T PRK09984 235 GSSQQ 239 (262)
T ss_pred CCHHH
Confidence 98753
No 155
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=9.1e-47 Score=390.23 Aligned_cols=272 Identities=20% Similarity=0.254 Sum_probs=204.9
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCC
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGE 106 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge 106 (325)
+..|+..+......++....+.+|+.+.++.+++........ .......++++||+|+|++. ++++|+|+||+|++||
T Consensus 430 l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~-~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge 508 (711)
T TIGR00958 430 LGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLA-PLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE 508 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCC
Confidence 345667777777888889999999998887554322111111 11223469999999999743 3579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
+++|+||||||||||+++|+|+ ++|++|+|.+||+++.+++....+. .+++++|+|.+|.+ |..+|+..+
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~idg~~i~~~~~~~lr~-~i~~v~Q~~~lF~g-TIreNI~~g------ 578 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNL--YQPTGGQVLLDGVPLVQYDHHYLHR-QVALVGQEPVLFSG-SVRENIAYG------ 578 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhc--cCCCCCEEEECCEEHHhcCHHHHHh-hceEEecCcccccc-CHHHHHhcC------
Confidence 9999999999999999999998 8899999999999999888766543 48899999998874 788887543
Q ss_pred hcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020477 187 KLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~ 261 (325)
.++.++++..+. +.+.++.+..+.+..-..-+.+||||||||++|||||+++|+|||||||||+||+++++.
T Consensus 579 ---~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~ 655 (711)
T TIGR00958 579 ---LTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655 (711)
T ss_pred ---CCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHH
Confidence 122222222221 222334332211111112234699999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
+.+ ... .+++|+|+|||+++.+.. +|+|++|++|+|++.|+++ +++++++.|
T Consensus 656 i~~-~~~--~~~~TvIiItHrl~~i~~--aD~IivL~~G~ive~Gt~~--eL~~~~~~y 707 (711)
T TIGR00958 656 LQE-SRS--RASRTVLLIAHRLSTVER--ADQILVLKKGSVVEMGTHK--QLMEDQGCY 707 (711)
T ss_pred HHH-hhc--cCCCeEEEEeccHHHHHh--CCEEEEEECCEEEEeeCHH--HHHhCCCch
Confidence 998 322 347899999999988764 6999999999999999754 567777644
No 156
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-47 Score=352.22 Aligned_cols=223 Identities=21% Similarity=0.300 Sum_probs=178.8
Q ss_pred CcEEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC----C
Q 020477 76 PLLQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE----M 148 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~----~ 148 (325)
..|+++||+++|++.. ..+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++.. .
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL--IISETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEcccccccc
Confidence 4699999999996421 2599999999999999999999999999999999998 67999999999998742 1
Q ss_pred CHHHHhhccEEEeccCCcc-CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChH
Q 020477 149 EPEERSLAGLFMSFQSPVE-IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGG 227 (325)
Q Consensus 149 ~~~~~~~~~i~~~~Q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG 227 (325)
......+..++|++|++.. +...++.+++.+.... .+ ....+...++.++++.+++..+..++.+.. ||||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~-LS~G 154 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN----LG---ENKQEAYKKVPELLKLVQLPEDYVKRSPFE-LSGG 154 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCChhHhcCChhh-CCHH
Confidence 1112223458899999732 2234777777543211 11 112333345677888999843456777664 9999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|||||+|||||+.+|++|||||||+|||+.+++.++++|+++.++ |+|||+||||++++..+ ||++++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~-~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRI-ADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998754 88999999999988877 6999999999999988
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+++
T Consensus 234 ~~~ 236 (289)
T PRK13645 234 SPF 236 (289)
T ss_pred CHH
Confidence 764
No 157
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-47 Score=349.58 Aligned_cols=220 Identities=28% Similarity=0.385 Sum_probs=183.7
Q ss_pred CcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 76 PLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
++|+++||+++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+....+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL--FEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCEEEECCEECCcCCHHHHh
Confidence 479999999999742 24599999999999999999999999999999999998 679999999999998755443332
Q ss_pred hccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
..++|++|++. .+...++.+++...... .+ ....+..+++.++++.+++. ++.++.+. .|||||+||++
T Consensus 81 -~~i~~v~q~~~~~~~~~tv~eni~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrv~ 150 (277)
T PRK13642 81 -RKIGMVFQNPDNQFVGATVEDDVAFGMEN----QG---IPREEMIKRVDEALLAVNML-DFKTREPA-RLSGGQKQRVA 150 (277)
T ss_pred -cceEEEEECHHHhhccCCHHHHHHhhHHH----cC---CCHHHHHHHHHHHHHHCCCH-hHhhCCcc-cCCHHHHHHHH
Confidence 46889999984 56667888887553211 11 12233345677888999985 56777776 49999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++.+++.|+++.++ |.|||++|||++++. . ||++++|++|++++.|+++
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~-~d~i~~l~~G~i~~~g~~~ 225 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-S-SDRILVMKAGEIIKEAAPS 225 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-h-CCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999765 899999999999986 4 7999999999999999864
No 158
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-46 Score=345.91 Aligned_cols=223 Identities=23% Similarity=0.317 Sum_probs=179.8
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCC--
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEM-- 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~-- 148 (325)
...+++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+... .|++|+|.++|+++...
T Consensus 10 ~~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 10 APSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CCceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 3568999999999964 5799999999999999999999999999999999998311 15899999999987532
Q ss_pred CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020477 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFS 225 (325)
Q Consensus 149 ~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LS 225 (325)
+.... +..++|+||++.+++ .++.+++....... . .....+...++.++++.+++.. +..++.+. +||
T Consensus 88 ~~~~~-~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~----~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS 158 (260)
T PRK10744 88 DIALL-RAKVGMVFQKPTPFP-MSIYDNIAFGVRLF----E--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGY-SLS 158 (260)
T ss_pred chHHH-hcceEEEecCCccCc-CcHHHHHhhhHhhc----C--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCC-CCC
Confidence 22222 246889999998777 78888875542210 0 1112233345677888888731 33556665 499
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
|||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++.+..+ +|++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARC-SDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHh-CCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 68999999999998877 699999999999999
Q ss_pred cCcc
Q 020477 306 GDAS 309 (325)
Q Consensus 306 g~~~ 309 (325)
|+++
T Consensus 237 g~~~ 240 (260)
T PRK10744 237 GNTD 240 (260)
T ss_pred CCHH
Confidence 8764
No 159
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=7.5e-47 Score=345.27 Aligned_cols=222 Identities=25% Similarity=0.347 Sum_probs=178.1
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe-----CCCCCH
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN-----LLEMEP 150 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~-----i~~~~~ 150 (325)
++|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|++ +...+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (253)
T TIGR02323 2 PLLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR--LAPDHGTATYIMRSGAELELYQLSE 77 (253)
T ss_pred ceEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEEecccccccccccCCH
Confidence 47999999999964 5699999999999999999999999999999999998 67999999999987 655444
Q ss_pred HHHh---hccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020477 151 EERS---LAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS 225 (325)
Q Consensus 151 ~~~~---~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 225 (325)
..+. ..++++++|++. ++...++.+++...... ..... ..+....+.++++.+++.....++.+. .||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~----~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~-~LS 150 (253)
T TIGR02323 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA----IGARH--YGNIRAAAHDWLEEVEIDPTRIDDLPR-AFS 150 (253)
T ss_pred HHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHH----hcccc--hHHHHHHHHHHHHHcCCChhhhhcCch-hcC
Confidence 3321 245889999974 33445555555322110 00000 112234567789999985345677765 499
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
|||||||+|||||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||+||||++++..+ +|++++|++|++++
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~-~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLL-AQRLLVMQQGRVVE 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998654 88999999999999877 69999999999999
Q ss_pred EcCcc
Q 020477 305 TGDAS 309 (325)
Q Consensus 305 ~g~~~ 309 (325)
.|+++
T Consensus 230 ~~~~~ 234 (253)
T TIGR02323 230 SGLTD 234 (253)
T ss_pred ECCHH
Confidence 98764
No 160
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.1e-48 Score=322.83 Aligned_cols=217 Identities=26% Similarity=0.359 Sum_probs=186.8
Q ss_pred CcEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 76 PLLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
.+|+++++++..+.+ ...+|++|+|.|++||.+|||||||||||||+-+++|+ ..|++|+|.+.|+++..++...+
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL--d~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL--DDPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC--CCCCCceEEEcCcchhhcCHHHH
Confidence 378999999988653 34699999999999999999999999999999999998 57999999999999998887654
Q ss_pred h---hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 154 S---LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 154 ~---~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
. ...+++|||...+.|+++..+|+......... ...+....+.+.|+++|+.. .+..++. +|||||+|
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge-------~~~~~~~~A~~lL~~vGLg~-Rl~HyP~-qLSGGEQQ 153 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGE-------SSADSRAGAKALLEAVGLGK-RLTHYPA-QLSGGEQQ 153 (228)
T ss_pred HHhhccceeEEEEeeeccccchhhhhccchhhhcCC-------ccccHHHHHHHHHHHhCccc-ccccCcc-ccCchHHH
Confidence 3 35699999999999999999999877654321 11223455777899999974 4556666 49999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
||+||||++..|+||+.||||.+||..+-++|.++|..+..+ |+|+|+||||+.++.+ |+|++.|.+|+|+++
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R--c~R~~r~~~G~l~~~ 227 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR--CDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh--hhheeeeecceeccC
Confidence 999999999999999999999999999999999999999755 9999999999998876 699999999999753
No 161
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.6e-46 Score=387.85 Aligned_cols=275 Identities=21% Similarity=0.272 Sum_probs=214.0
Q ss_pred eehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020477 27 VFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGE 106 (325)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge 106 (325)
.+..|+..+......++....+.+|+.++++.+++.... ...........++++||+|+|+++++.+|+|+||+|++||
T Consensus 406 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~ 484 (694)
T TIGR01846 406 RVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGE 484 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCC
Confidence 345678888888889999999999999988765443221 1111112234699999999997555679999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
.++|+|+||||||||+|+|+|+ ++|++|+|.+||.++..++....+. .+++++|++.+|++ |..+|+...
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~--~~p~~G~I~idg~~i~~~~~~~~r~-~i~~v~q~~~lf~~-ti~eNi~~~------ 554 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRL--YTPQHGQVLVDGVDLAIADPAWLRR-QMGVVLQENVLFSR-SIRDNIALC------ 554 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEehhhCCHHHHHH-hCeEEccCCeehhh-hHHHHHhcC------
Confidence 9999999999999999999998 7899999999999999888776544 48899999988874 777877542
Q ss_pred hcCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020477 187 KLGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261 (325)
Q Consensus 187 ~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~ 261 (325)
.++.+.++..+ .+.+.++.+..+.+..-..-+.+||||||||++|||||+++|++|||||||++||+.+++.
T Consensus 555 ---~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~ 631 (694)
T TIGR01846 555 ---NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631 (694)
T ss_pred ---CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHH
Confidence 12222233222 2334455553322222222344699999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
+.+.|+++. +++|+|+|||+++.+.. +|+|++|++|++++.|+++ ++++..|.|
T Consensus 632 i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~ii~l~~G~i~~~g~~~--~l~~~~~~y 685 (694)
T TIGR01846 632 IMRNMREIC-RGRTVIIIAHRLSTVRA--CDRIIVLEKGQIAESGRHE--ELLALQGLY 685 (694)
T ss_pred HHHHHHHHh-CCCEEEEEeCChHHHHh--CCEEEEEeCCEEEEeCCHH--HHHHcCChH
Confidence 999999985 46899999999998864 6999999999999999764 566666643
No 162
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=346.54 Aligned_cols=224 Identities=20% Similarity=0.307 Sum_probs=178.7
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-C--CCCccEEEECCEeCCCCCH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-Y--EVTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~--~p~~G~I~~~g~~i~~~~~ 150 (325)
..++++++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+.. . .|++|+|.++|+++...+.
T Consensus 18 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 18 KEHILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CCceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 4568999999999963 679999999999999999999999999999999999731 1 2689999999998864221
Q ss_pred H-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020477 151 E-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG 226 (325)
Q Consensus 151 ~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg 226 (325)
. .....+++|++|++.+++. ++.+++...... .... ........+.+.++.+++.. +..++.+. +|||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LSg 167 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKY----AGER--RKSVLDEIVEESLTKAALWDEVKDRLHSSAL-SLSG 167 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHh----cCCC--cHHHHHHHHHHHHHHcCCCcchHHHHhcCcc-cCCH
Confidence 1 1123468999999988875 888887654321 1110 11122334566777777631 23456665 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|||||++|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~-~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRV-SDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHh-CCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999865 58999999999988877 6999999999999998
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+++
T Consensus 246 ~~~ 248 (268)
T PRK14248 246 QTE 248 (268)
T ss_pred CHH
Confidence 765
No 163
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-47 Score=369.11 Aligned_cols=224 Identities=27% Similarity=0.402 Sum_probs=201.1
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++++++|++|+|++ .++|++|||++.+||++||+|+||||||||+|+|+|. ++|++|+|.++|+.+...++.+.
T Consensus 5 ~~~ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv--~~p~~G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 5 TPPLLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV--YPPDSGEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ccceeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc--ccCCCceEEECCEEccCCCHHHH
Confidence 3568999999999974 6899999999999999999999999999999999998 88999999999999988888887
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
...||..++|+..++|++++.+|+.+....... ..-++......++.++|+++++..+ .+..++. ||.||||.|+
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~---~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~-LsiaqrQ~Ve 155 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRR---FGLIDRKAMRRRARELLARLGLDID-PDTLVGD-LSIAQRQMVE 155 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcccccccC---CCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhh-CCHHHHHHHH
Confidence 778999999999999999999998876543221 1224456677788889999998633 6677765 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
|||||..+++|||||||||+|+....+.+++++++++++|.+||+|||.++++..+ ||||.||+||+.+.+.+
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i-~DritVlRDG~~v~~~~ 228 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEI-ADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHh-cCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999999999999999999999999999999998 69999999999998877
No 164
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=7.6e-47 Score=336.83 Aligned_cols=211 Identities=25% Similarity=0.331 Sum_probs=176.6
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++||+++|+. .++|+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++..... . +..
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~--~-~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF--IEPASGSIKVNDQSHTGLAP--Y-QRP 71 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEcccCCh--h-ccc
Confidence 478999999952 57899999999999999999999999999999998 67999999999998865332 1 235
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++|++.+++.+++.+++....... .. . ..+...++.++++.+++. +..++.+. .|||||+||++||||
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~---~~---~-~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrl~lara 142 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPG---LK---L-NAEQQEKVVDAAQQVGIA-DYLDRLPE-QLSGGQRQRVALARC 142 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhcc---CC---c-cHHHHHHHHHHHHHcCcH-HHhhCCcc-cCCHHHHHHHHHHHH
Confidence 889999999888889998876532110 00 0 111234567789999995 56677776 499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
|+.+|++|||||||++||+.+++.+.+.|+++.++ +.|||+||||++++..+ +|++++|++|++++.|+
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~-~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAI-ASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh-cCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999998754 78999999999998876 69999999999998874
No 165
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.5e-47 Score=370.68 Aligned_cols=228 Identities=28% Similarity=0.357 Sum_probs=187.1
Q ss_pred CCcEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC--CCccEEEECCEeCCCCCH
Q 020477 75 QPLLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE--VTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~--p~~G~I~~~g~~i~~~~~ 150 (325)
.++|+++||++.|...+ ..+++||||+|++||++||+|+|||||||+.++|+|+++.. ..+|+|.|+|+++..++.
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred CceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 34899999999997433 25999999999999999999999999999999999984322 248999999999988877
Q ss_pred HHHh---hccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccc-cccCCCCC
Q 020477 151 EERS---LAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFL-NRNVNEGF 224 (325)
Q Consensus 151 ~~~~---~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~L 224 (325)
..++ ...++++||+|. +-|.+++.+.+.-.+.... ....++..+++.++|+.+++..... +++++ +|
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~------~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPh-eL 155 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG------KGSRAEARKRAVELLEQVGLPDPERRDRYPH-QL 155 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHcCCCChhhhccCCc-cc
Confidence 5532 245999999985 3344555544443332211 1125566788899999999975433 24665 59
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|+++|+||||+..+..+ ||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~-aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL-ADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHh-cCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999985 499999999999999998 7999999999999
Q ss_pred EEcCccH
Q 020477 304 KTGDASI 310 (325)
Q Consensus 304 ~~g~~~~ 310 (325)
+.|+++.
T Consensus 235 E~G~~~~ 241 (539)
T COG1123 235 ETGPTEE 241 (539)
T ss_pred EecCHHH
Confidence 9998763
No 166
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=345.64 Aligned_cols=225 Identities=22% Similarity=0.315 Sum_probs=180.4
Q ss_pred CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCC-
Q 020477 73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEM- 148 (325)
Q Consensus 73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~- 148 (325)
...++|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+... .|++|+|.++|+++...
T Consensus 15 ~~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 15 ATEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 34668999999999964 5799999999999999999999999999999999998321 14899999999988642
Q ss_pred -CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCC
Q 020477 149 -EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGF 224 (325)
Q Consensus 149 -~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~L 224 (325)
....+ +..+++++|++.+++. ++.+++.+..... +.. ....+....+.++++.+++.. ..+++.+. .|
T Consensus 93 ~~~~~~-~~~i~~v~q~~~~~~~-tv~enl~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~L 164 (267)
T PRK14235 93 LDVVEL-RARVGMVFQKPNPFPK-SIYENVAYGPRIH----GLA-RSKAELDEIVETSLRKAGLWEEVKDRLHEPGT-GL 164 (267)
T ss_pred cchHHH-hhceEEEecCCCCCCC-cHHHHHHHHHHhc----ccc-cchHHHHHHHHHHHHHcCCchhhhHHhhCCcc-cC
Confidence 22222 2458899999988874 8888876542111 110 011223345677888888842 23455565 49
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
|||||||++|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++.+..+ ||++++|++|++++
T Consensus 165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~-~d~v~~l~~G~i~~ 242 (267)
T PRK14235 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARV-SQRTAFFHLGNLVE 242 (267)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhh-CCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999865 68999999999999877 69999999999999
Q ss_pred EcCcc
Q 020477 305 TGDAS 309 (325)
Q Consensus 305 ~g~~~ 309 (325)
.|+++
T Consensus 243 ~g~~~ 247 (267)
T PRK14235 243 VGDTE 247 (267)
T ss_pred eCCHH
Confidence 98764
No 167
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=341.79 Aligned_cols=221 Identities=21% Similarity=0.301 Sum_probs=180.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CCCCccEEEECCEeCCCCCHHHHhh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
+++++|+++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.. ++|++|+|.++|+++...+.... +
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~-~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL-R 78 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH-h
Confidence 5889999999963 579999999999999999999999999999999999732 24789999999999876554332 3
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGqrQRv 232 (325)
..++|+||++.+++ .++.+++....... +... .......++.++++.+++.. +..++.+. +|||||||||
T Consensus 79 ~~i~~~~q~~~l~~-~tv~eni~~~~~~~----~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFV-KSIYENISYAPKLH----GMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNAL-ALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCcccc-ccHHHHhhhHHhhc----Cccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCCcc-cCCHHHHHHH
Confidence 45889999998886 58888876542111 1100 11223345677889998842 23455555 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++..+ +|++++|++|++++.|+++
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRV-ADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhh-CcEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999864 78999999999998877 6999999999999998765
No 168
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-47 Score=340.97 Aligned_cols=214 Identities=25% Similarity=0.335 Sum_probs=179.7
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
|++++||+++|++ + ..++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...... ..
T Consensus 1 ~l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~---~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGF--LTPASGSLTLNGQDHTTTPPS---RR 71 (232)
T ss_pred CeEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCeecCcCChh---hc
Confidence 5899999999963 2 2499999999999999999999999999999998 679999999999988654432 23
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|++|++.+++.+++.+++...... .. .. ......++.++++.+++. +..++.+.. ||||||||++|||
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~---~~---~~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~lar 142 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNP---GL---KL-NAAQREKLHAIARQMGIE-DLLARLPGQ-LSGGQRQRVALAR 142 (232)
T ss_pred cEEEEecccccccCCcHHHHHhccccc---cc---CC-CHHHHHHHHHHHHHcCcH-HHHhCCccc-CCHHHHHHHHHHH
Confidence 588999999888888998887543211 00 00 112234577889999996 567777765 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||++|||++++..+ +|++++|++|++++.|+.+
T Consensus 143 al~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~g~i~~~g~~~ 215 (232)
T PRK10771 143 CLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARI-APRSLVVADGRIAWDGPTD 215 (232)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999998654 88999999999998876 6999999999999998764
No 169
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-48 Score=326.83 Aligned_cols=223 Identities=24% Similarity=0.335 Sum_probs=190.9
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC------
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM------ 148 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~------ 148 (325)
.+.|+++|+.++|+. ..+|++||++-++|+++.|||.|||||||+||||.=| ..|+.|.|.++|+.+.-.
T Consensus 4 ~~~l~v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~L--E~P~~G~I~v~geei~~k~~~~G~ 79 (256)
T COG4598 4 ENALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL--EKPSAGSIRVNGEEIRLKRDKDGQ 79 (256)
T ss_pred ccceehhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhh--cCCCCceEEECCeEEEeeeCCCCC
Confidence 457999999999974 6799999999999999999999999999999999987 679999999999876321
Q ss_pred ----CHHH--HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC
Q 020477 149 ----EPEE--RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE 222 (325)
Q Consensus 149 ----~~~~--~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 222 (325)
+.++ +-+...+++||+..++..+|+.+|+....-. .++ ..+.+..+++..+|.++|+. +..+.++..
T Consensus 80 l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvh---VLg---~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~ 152 (256)
T COG4598 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH---VLG---VSKAEAIERAEKYLAKVGIA-EKADAYPAH 152 (256)
T ss_pred eeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchH---hhc---CCHHHHHHHHHHHHHHhCch-hhhhcCccc
Confidence 1122 2234688999999999999999987543211 122 23456677888899999996 456667765
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++++++|+|+++|||.+.++..+ ..+++++++|.|
T Consensus 153 -LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~V-ss~v~fLh~G~i 230 (256)
T COG4598 153 -LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDV-SSHVIFLHQGKI 230 (256)
T ss_pred -cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhh-hhheEEeeccee
Confidence 999999999999999999999999999999999999999999999999999999999999999998 588999999999
Q ss_pred EEEcCccH
Q 020477 303 IKTGDASI 310 (325)
Q Consensus 303 v~~g~~~~ 310 (325)
-++|+|+.
T Consensus 231 EE~G~P~q 238 (256)
T COG4598 231 EEEGPPEQ 238 (256)
T ss_pred cccCChHH
Confidence 99999863
No 170
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-46 Score=341.73 Aligned_cols=223 Identities=19% Similarity=0.273 Sum_probs=178.5
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CCC--CccEEEECCEeCCCCCH-H
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEV--TEGSVVFKGENLLEMEP-E 151 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~p--~~G~I~~~g~~i~~~~~-~ 151 (325)
++|+++|+++.|+. +.+|+|+||+|++||+++|+|+||||||||+++|+|+.. .+| ++|+|.++|+++...+. .
T Consensus 2 ~~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 2 VKIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred cEEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 58999999999964 579999999999999999999999999999999999621 233 58999999998864321 1
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGE 228 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGq 228 (325)
...+.+++|++|++.+++ .++.+++....... +.. ........+.++++.+++.. +..++.+. .|||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G~ 151 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVN----GVK--DNAFIRQRVEETLKGAALWDEVKDKLKESAF-ALSGGQ 151 (250)
T ss_pred HHHhhheEEEecCCccCc-ccHHHHHHHHHHHc----CCC--cHHHHHHHHHHHHHHcCCCcchhhhhhCCcc-cCCHHH
Confidence 122346899999998776 58888876543211 110 11222345667788888742 23455555 599999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|+++. +++|||++|||++++..+ ||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~-~d~v~~l~~G~~~~~~~~ 229 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARV-SDKTAFFYMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhh-CCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999985 468999999999998877 699999999999999976
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 230 ~~ 231 (250)
T PRK14245 230 KK 231 (250)
T ss_pred HH
Confidence 53
No 171
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-46 Score=341.68 Aligned_cols=224 Identities=25% Similarity=0.343 Sum_probs=179.0
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCCCH-
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEMEP- 150 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~~~- 150 (325)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+..+.| ++|+|.++|+++.....
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 3 EPILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred CceEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 358999999999963 579999999999999999999999999999999999732235 59999999998854221
Q ss_pred HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020477 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG 227 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG 227 (325)
....+..+++++|++.+++ .++.+++...... .+.. ........+.++++.+++.. +..++.+. +||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G 152 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRL----KGIK--DKQVLDEAVEKSLKGASIWDEVKDRLHDSAL-GLSGG 152 (252)
T ss_pred hHhhhhcEEEEecCCccCc-CcHHHHHHHHHHH----cCCC--cHHHHHHHHHHHHHHcCCchhHHHHHhcCcc-cCCHH
Confidence 1111245899999998877 7888887654221 1111 11222345666788887632 23456665 49999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
|||||+|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRI-SDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHh-CCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 58999999999988877 69999999999999987
Q ss_pred ccH
Q 020477 308 ASI 310 (325)
Q Consensus 308 ~~~ 310 (325)
.+.
T Consensus 231 ~~~ 233 (252)
T PRK14239 231 TKQ 233 (252)
T ss_pred HHH
Confidence 653
No 172
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-46 Score=345.57 Aligned_cols=223 Identities=21% Similarity=0.311 Sum_probs=181.0
Q ss_pred CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCC
Q 020477 73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLE 147 (325)
Q Consensus 73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~ 147 (325)
...++|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|.++..
T Consensus 17 ~~~~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--~~p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 17 AAAPAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM--NDKVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred ccCcEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc--CCcCCCCCCceEEEECCEEccc
Confidence 34678999999999963 6799999999999999999999999999999999998 44 479999999998865
Q ss_pred CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCC
Q 020477 148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGF 224 (325)
Q Consensus 148 ~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~L 224 (325)
.......+..++|++|++.+++ .++.+++....... . .....+....+.+.++.+++.. +.+++.+. +|
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~----~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~-~L 164 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH----K--LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPF-RL 164 (276)
T ss_pred cchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc----c--CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcc-cC
Confidence 4322122345889999998887 78888876543211 0 0122333344566788888742 12445555 49
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||+||||++++..+ +|++++|++|++++
T Consensus 165 SgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~-~dri~~l~~G~i~~ 242 (276)
T PRK14271 165 SGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARI-SDRAALFFDGRLVE 242 (276)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-CCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 47999999999998887 69999999999999
Q ss_pred EcCcc
Q 020477 305 TGDAS 309 (325)
Q Consensus 305 ~g~~~ 309 (325)
.|+++
T Consensus 243 ~g~~~ 247 (276)
T PRK14271 243 EGPTE 247 (276)
T ss_pred eCCHH
Confidence 98865
No 173
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3e-46 Score=376.01 Aligned_cols=264 Identities=25% Similarity=0.307 Sum_probs=205.9
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.+++.... .........++++|++|+|+++++++|+|+||+|++||+
T Consensus 270 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~ 346 (544)
T TIGR01842 270 ALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEA 346 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCE
Confidence 34677777777888899999999999988654432111 111122346999999999975446899999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
++|+||||||||||+++|+|+ ++|++|+|.++|.++...+....+ ..+++++|++.+|++ |..+|+....
T Consensus 347 ~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~i~~~~~~~~~-~~i~~v~q~~~lf~~-ti~~Ni~~~~------ 416 (544)
T TIGR01842 347 LAIIGPSGSGKSTLARLIVGI--WPPTSGSVRLDGADLKQWDRETFG-KHIGYLPQDVELFPG-TVAENIARFG------ 416 (544)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEehhhCCHHHHh-hheEEecCCcccccc-cHHHHHhccC------
Confidence 999999999999999999998 789999999999999887765543 458899999999876 7888775321
Q ss_pred cCCCCCChHHHH-----HhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFY-----AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
+..+.++.. ..+.+.++.++.+.+..-...+..||||||||++|||||+++|++|||||||++||+++++.+
T Consensus 417 ---~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i 493 (544)
T TIGR01842 417 ---ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQAL 493 (544)
T ss_pred ---CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHH
Confidence 112222222 123455666632212222222346999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
.+.|.++..+++|+|++||+++.+. . +|+|++|++|++++.|+++
T Consensus 494 ~~~l~~~~~~~~tvi~ith~~~~~~-~-~d~i~~l~~G~i~~~g~~~ 538 (544)
T TIGR01842 494 ANAIKALKARGITVVVITHRPSLLG-C-VDKILVLQDGRIARFGERD 538 (544)
T ss_pred HHHHHHHhhCCCEEEEEeCCHHHHH-h-CCEEEEEECCEEEeeCCHH
Confidence 9999998656789999999998765 3 6999999999999999865
No 174
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.9e-46 Score=345.63 Aligned_cols=225 Identities=28% Similarity=0.404 Sum_probs=183.2
Q ss_pred CcEEEEEEEEEECC-------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC
Q 020477 76 PLLQVTGLTAVIAE-------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148 (325)
Q Consensus 76 ~~l~~~~ls~~y~~-------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~ 148 (325)
++|+++||++.|+. .++.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~sG~i~~~g~~~~~~ 79 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL--ESPSQGNVSWRGEPLAKL 79 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccc
Confidence 47999999999973 136799999999999999999999999999999999998 679999999999988765
Q ss_pred CHHH--HhhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020477 149 EPEE--RSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF 224 (325)
Q Consensus 149 ~~~~--~~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 224 (325)
+... ..+..++|++|++. +++..++.+++...... .. .....+....+.++++.+++.....++.+.. |
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~----~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH----LL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQ-L 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh----hc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCcc-C
Confidence 5432 12345899999973 45556777765432211 00 1112233346778899999854456777664 9
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
|||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ +.|||++|||++++..+ ||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~-~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF-CQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHh-CCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999998754 78999999999999887 6999999999999
Q ss_pred EEcCccH
Q 020477 304 KTGDASI 310 (325)
Q Consensus 304 ~~g~~~~ 310 (325)
+.|+++.
T Consensus 232 ~~g~~~~ 238 (268)
T PRK10419 232 ETQPVGD 238 (268)
T ss_pred eeCChhh
Confidence 9987653
No 175
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.8e-46 Score=377.71 Aligned_cols=271 Identities=19% Similarity=0.259 Sum_probs=200.2
Q ss_pred hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEE
Q 020477 29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH 108 (325)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~ 108 (325)
..|+..+......++....+..|..++++.++.................++++||+|+|++ ++++|+|+||++++||++
T Consensus 286 ~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~inl~i~~G~~v 364 (588)
T PRK13657 286 IGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDN-SRQGVEDVSFEAKPGQTV 364 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCC-CCceecceeEEECCCCEE
Confidence 3455555555666677777777777766543322111111011112346999999999974 357999999999999999
Q ss_pred EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020477 109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL 188 (325)
Q Consensus 109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
+|+|+||||||||+|+|+|+ ++|++|+|.++|.++..++....+. .++|++|++.+|.+ |..+|+.+.
T Consensus 365 ~IvG~sGsGKSTLl~lL~gl--~~p~~G~I~i~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~~-Ti~~Ni~~~-------- 432 (588)
T PRK13657 365 AIVGPTGAGKSTLINLLQRV--FDPQSGRILIDGTDIRTVTRASLRR-NIAVVFQDAGLFNR-SIEDNIRVG-------- 432 (588)
T ss_pred EEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCEEhhhCCHHHHHh-heEEEecCcccccc-cHHHHHhcC--------
Confidence 99999999999999999998 8899999999999999888766543 48899999998875 778877543
Q ss_pred CCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH
Q 020477 189 GQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263 (325)
Q Consensus 189 ~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~ 263 (325)
.++.++++.+.. +.+.++.+..+.+..-..-+..||||||||++|||||+++|++||||||||+||+.+++.++
T Consensus 433 -~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~ 511 (588)
T PRK13657 433 -RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK 511 (588)
T ss_pred -CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 122223332221 23334444222122112223359999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020477 264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG 318 (325)
Q Consensus 264 ~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~ 318 (325)
+.|.++. +++|+|+|||+++.+.. +|+|++|++|++++.|+.+ ++++.++
T Consensus 512 ~~l~~~~-~~~tvIiitHr~~~~~~--~D~ii~l~~G~i~~~g~~~--~l~~~~~ 561 (588)
T PRK13657 512 AALDELM-KGRTTFIIAHRLSTVRN--ADRILVFDNGRVVESGSFD--ELVARGG 561 (588)
T ss_pred HHHHHHh-cCCEEEEEEecHHHHHh--CCEEEEEECCEEEEeCCHH--HHHHCCC
Confidence 9999875 36899999999988764 6999999999999999754 4444444
No 176
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-46 Score=341.73 Aligned_cols=223 Identities=20% Similarity=0.323 Sum_probs=179.9
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCHH-
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEPE- 151 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~~- 151 (325)
..|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.... |++|+|.++|+++...+..
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 46899999999963 57999999999999999999999999999999999983211 3689999999988543211
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGE 228 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGq 228 (325)
...+..++++||++.+++..++.+++...+... +.. ...+....+.+.++.+++.. +..++.+. .|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN----GRV--NRSEADEIVESSLKRVALWDEVKDRLKSNAM-ELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc----CCC--CHHHHHHHHHHHHHHcCCchhhhHHhhCCcC-cCCHHH
Confidence 122346889999999888889988886543211 111 11223345677788888742 23445555 599999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++.|++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARV-SDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhh-CCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999975 57999999999998877 699999999999999976
Q ss_pred c
Q 020477 309 S 309 (325)
Q Consensus 309 ~ 309 (325)
+
T Consensus 232 ~ 232 (252)
T PRK14256 232 K 232 (252)
T ss_pred H
Confidence 5
No 177
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-47 Score=360.13 Aligned_cols=211 Identities=21% Similarity=0.321 Sum_probs=178.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---HHH
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---EER 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---~~~ 153 (325)
||++ ||+++|++ +. + |+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++..... ...
T Consensus 1 ~l~~-~l~k~~~~--~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl--~~p~~G~I~~~g~~~~~~~~~~~~~~ 73 (352)
T PRK11144 1 MLEL-NFKQQLGD--LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGL--TRPQKGRIVLNGRVLFDAEKGICLPP 73 (352)
T ss_pred CeEE-EEEEEeCC--EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccccch
Confidence 5788 99999964 32 3 89999999999999999999999999999998 67999999999998754211 011
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
.+..++|+||++.+|+.+++.+++.+.... ....++.++++.+++. +..++.+.+ |||||||||+
T Consensus 74 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-------------~~~~~~~~~l~~~gl~-~~~~~~~~~-LSgGq~qRva 138 (352)
T PRK11144 74 EKRRIGYVFQDARLFPHYKVRGNLRYGMAK-------------SMVAQFDKIVALLGIE-PLLDRYPGS-LSGGEKQRVA 138 (352)
T ss_pred hhCCEEEEcCCcccCCCCcHHHHHHhhhhh-------------hhHHHHHHHHHHcCCc-hhhhCCccc-CCHHHHHHHH
Confidence 124588999999999999999987654210 1123467788999996 567777765 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||||+.+|++|||||||++||+.+++.+++.|+++.++ |.|||+||||++++..+ ||++++|++|++++.|+++.
T Consensus 139 laraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 139 IGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRL-ADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHh-CCEEEEEeCCEEEEecCHHH
Confidence 999999999999999999999999999999999999765 88999999999999887 69999999999999998653
No 178
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=382.83 Aligned_cols=226 Identities=26% Similarity=0.336 Sum_probs=188.7
Q ss_pred CCcEEEEEEEEEECCC---------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020477 75 QPLLQVTGLTAVIAES---------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~---------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i 145 (325)
.++|+++||++.|+.. .+.+|+|+||+|++||+++|+|+||||||||+|+|+|+ .+|++|+|.++|+++
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl--~~p~~G~I~~~g~~i 388 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL--VESQGGEIIFNGQRI 388 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCcEEEECCEEC
Confidence 4689999999999621 24699999999999999999999999999999999998 679999999999998
Q ss_pred CCCCHHHH--hhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCC
Q 020477 146 LEMEPEER--SLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221 (325)
Q Consensus 146 ~~~~~~~~--~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 221 (325)
...+...+ .+..++|+||++ .+++.+++.+++....... +. ....+...++.++++.+++..+..++.+.
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 462 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH----GL--LPGKAAAARVAWLLERVGLLPEHAWRYPH 462 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc----CC--CCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 76654321 234689999997 4778889988876543211 11 01223345677889999995456777776
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
+ |||||||||+|||||+.+|+||||||||++||+.++..++++|++++++ |.|||+||||++++..+ ||+|++|++|
T Consensus 463 ~-LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~-~dri~vl~~G 540 (623)
T PRK10261 463 E-FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERI-SHRVAVMYLG 540 (623)
T ss_pred c-CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECC
Confidence 5 9999999999999999999999999999999999999999999999765 88999999999999887 6999999999
Q ss_pred EEEEEcCccH
Q 020477 301 RIIKTGDASI 310 (325)
Q Consensus 301 ~iv~~g~~~~ 310 (325)
+|++.|+++.
T Consensus 541 ~iv~~g~~~~ 550 (623)
T PRK10261 541 QIVEIGPRRA 550 (623)
T ss_pred EEEEecCHHH
Confidence 9999987653
No 179
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-46 Score=342.07 Aligned_cols=223 Identities=22% Similarity=0.324 Sum_probs=179.7
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCC--CCH
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLE--MEP 150 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~--~~~ 150 (325)
.+++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.... |++|+|.++|+++.. ...
T Consensus 3 ~~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 3 KRIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred ccEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 37999999999964 57999999999999999999999999999999999983211 379999999998743 222
Q ss_pred HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020477 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG 227 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG 227 (325)
... +..+++++|++.+++..++.+++....... +. ....+..+.+.++++.+++.. +..++.+. +||||
T Consensus 81 ~~~-~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~----~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G 152 (258)
T PRK14241 81 VAV-RRTIGMVFQRPNPFPTMSIRDNVVAGLKLN----GV--RNKKDLDELVEKSLRGANLWNEVKDRLDKPGG-GLSGG 152 (258)
T ss_pred HHH-hcceEEEccccccCCCCcHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHHHcCCchhhhhHhhCCcc-cCCHH
Confidence 222 346899999998888889998876543211 11 012233345667788888731 34556665 49999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe------CCE
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME------DGR 301 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~------~G~ 301 (325)
|||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++..+ ||++++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~-~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARV-SDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHh-CCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999864 58999999999998877 69999996 799
Q ss_pred EEEEcCccH
Q 020477 302 IIKTGDASI 310 (325)
Q Consensus 302 iv~~g~~~~ 310 (325)
+++.|+++.
T Consensus 231 i~~~~~~~~ 239 (258)
T PRK14241 231 LVEIDDTEK 239 (258)
T ss_pred EEecCCHHH
Confidence 999997653
No 180
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1e-46 Score=338.93 Aligned_cols=218 Identities=25% Similarity=0.411 Sum_probs=178.3
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++...+...+
T Consensus 4 ~~~~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 4 NSPLLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL--ISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred CCceEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCeEEECCEEcCcCCHHHH
Confidence 3458999999999963 5799999999999999999999999999999999998 67999999999999876655433
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
...++|++|++.+++ .++.+++....... ... . ...++.++++.+++.....++.+.+ |||||+|||+
T Consensus 80 -~~~i~~~~q~~~l~~-~tv~enl~~~~~~~----~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~~-LS~G~~qrv~ 147 (225)
T PRK10247 80 -RQQVSYCAQTPTLFG-DTVYDNLIFPWQIR----NQQ---P--DPAIFLDDLERFALPDTILTKNIAE-LSGGEKQRIS 147 (225)
T ss_pred -HhccEEEeccccccc-ccHHHHHHhHHhhc----CCC---h--HHHHHHHHHHHcCCChHHhcCCccc-CCHHHHHHHH
Confidence 246789999988876 48888876532111 110 1 1234567889999853456677764 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEe-CCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIME-DGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~-~G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||++|||++++. . ||++++|+ ++..+++|+.+
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~-~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-H-ADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-h-CCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999999999998754 889999999999985 4 79999994 56666777543
No 181
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-46 Score=346.63 Aligned_cols=222 Identities=23% Similarity=0.325 Sum_probs=181.0
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC--------ccEEEECCEeCCCC
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT--------EGSVVFKGENLLEM 148 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~--------~G~I~~~g~~i~~~ 148 (325)
||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|.++...
T Consensus 1 ml~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~--~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 1 MLTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD--LTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred CeEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCcccccccCCceEEEECCEEcccC
Confidence 5899999999964 5799999999999999999999999999999999998 5677 89999999998765
Q ss_pred CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020477 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE 228 (325)
Q Consensus 149 ~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq 228 (325)
+...++. .+++++|++..+...++.+++............ .. ..+....+.++++.+++. +..++.+.. |||||
T Consensus 77 ~~~~~~~-~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~ 150 (272)
T PRK13547 77 DAPRLAR-LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAG--AL-THRDGEIAWQALALAGAT-ALVGRDVTT-LSGGE 150 (272)
T ss_pred CHHHHHh-hcEEecccCCCCCCCcHHHHHhhcccccccccc--cC-CHHHHHHHHHHHHHcCcH-hhhcCCccc-CCHHH
Confidence 5444332 468899998755567888887553211000000 01 122234567788999996 456777664 99999
Q ss_pred HHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 229 RKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 229 rQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
+|||+|||||+ .+|++|||||||+|||+.+++.+.+.|+++.++ |.|||+||||++++..+ ||++++|+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~-~d~i~~l~ 229 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARH-ADRIAMLA 229 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-CCEEEEEE
Confidence 99999999999 499999999999999999999999999998765 88999999999998877 69999999
Q ss_pred CCEEEEEcCcc
Q 020477 299 DGRIIKTGDAS 309 (325)
Q Consensus 299 ~G~iv~~g~~~ 309 (325)
+|++++.|+++
T Consensus 230 ~G~i~~~g~~~ 240 (272)
T PRK13547 230 DGAIVAHGAPA 240 (272)
T ss_pred CCeEEEecCHH
Confidence 99999998865
No 182
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.5e-46 Score=337.04 Aligned_cols=209 Identities=21% Similarity=0.318 Sum_probs=177.9
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++.... . ..
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~~~~~~~~~---~--~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI--LRPTSGEIIFDGHPWTRKD---L--HK 71 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEeccccc---c--cc
Confidence 478999999963 5799999999999999999999999999999999998 6799999999998864321 1 35
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++++||++.+++..++.+++...... .+. . ...+.++++.+++. +..++.+.. |||||+||++||||
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~----~~~---~----~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~~rv~lara 138 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTL----LGL---P----DSRIDEVLNIVDLT-NTGKKKAKQ-FSLGMKQRLGIAIA 138 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHH----cCC---C----HHHHHHHHHHcCCc-HHHhhhHhh-CCHHHHHHHHHHHH
Confidence 88999999888888988887554321 111 1 12456778899996 556776654 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+.+|++|||||||+|||+.+++.+++.|+++.++|.|||++|||++++..+ ||++++|++|++++.|++.
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQL-ADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh-cCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999999999976688999999999998877 6999999999999998765
No 183
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-46 Score=342.27 Aligned_cols=224 Identities=23% Similarity=0.314 Sum_probs=179.4
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCC--
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEM-- 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~-- 148 (325)
..++|+++|+++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+....| ++|+|.++|+++...
T Consensus 9 ~~~~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 9 KQEVYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred CCceEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 3568999999999964 579999999999999999999999999999999999731113 689999999987532
Q ss_pred CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020477 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFS 225 (325)
Q Consensus 149 ~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LS 225 (325)
..... +..++|++|++.+++. ++.+++.+.... .+. ....+...++.++++.+++.. +.+++.+. +||
T Consensus 87 ~~~~~-~~~i~~v~q~~~~~~~-tv~enl~~~~~~----~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~-~LS 157 (259)
T PRK14274 87 DLVEL-RKNIGMVFQKGNPFPQ-SIFDNVAYGPRI----HGT--KNKKKLQEIVEKSLKDVALWDEVKDRLHTQAL-SLS 157 (259)
T ss_pred CHHHH-hhceEEEecCCccccc-CHHHHHHhHHHh----cCC--CCHHHHHHHHHHHHHHcCCchhhhhhhhCCcc-cCC
Confidence 22222 2468999999988875 888887543211 111 112233345667788888742 23456665 499
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||+||||++.+..+ ||++++|++|++++.
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~-~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARV-SDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHh-CCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 68999999999998887 699999999999999
Q ss_pred cCccH
Q 020477 306 GDASI 310 (325)
Q Consensus 306 g~~~~ 310 (325)
|+++.
T Consensus 236 g~~~~ 240 (259)
T PRK14274 236 NDTNK 240 (259)
T ss_pred CCHHH
Confidence 98653
No 184
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-46 Score=337.73 Aligned_cols=215 Identities=21% Similarity=0.378 Sum_probs=182.2
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+.. ...
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~---~~~ 73 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF--ETPTSGEILLDGKDITNLPPH---KRP 73 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCChh---hcc
Confidence 468999999964 5799999999999999999999999999999999998 678999999999988765432 245
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++.+++.+++....... + .........+.++++.+++. +..++.+. .|||||+||++||||
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~lS~G~~qrl~lara 144 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLK----K---LPKAEIKERVAEALDLVQLE-GYANRKPS-QLSGGQQQRVAIARA 144 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCc-hhhcCChh-hCCHHHHHHHHHHHH
Confidence 889999998888888888876543211 1 11222334567788999996 56777776 499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||+++++..+ +|++++|++|++++.|+.+
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~i~~l~~G~~~~~~~~~ 216 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTM-SDRIAVMNKGKIQQIGTPE 216 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999998764 88999999999998876 6999999999999988654
No 185
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.5e-46 Score=376.52 Aligned_cols=272 Identities=22% Similarity=0.306 Sum_probs=207.3
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.+++..... .........++++||+++|++.++++|+|+||+|++||+
T Consensus 283 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~ 360 (571)
T TIGR02203 283 LIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGET 360 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCE
Confidence 467888888888899999999999998876544322111 111112346999999999975456799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
++|+|+||||||||+++|+|+ ++|++|+|.++|.++..++....+ ..++|++|+|.+|.+ |..+|+.....
T Consensus 361 v~IvG~sGsGKSTLl~lL~gl--~~~~~G~I~i~g~~i~~~~~~~~~-~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----- 431 (571)
T TIGR02203 361 VALVGRSGSGKSTLVNLIPRF--YEPDSGQILLDGHDLADYTLASLR-RQVALVSQDVVLFND-TIANNIAYGRT----- 431 (571)
T ss_pred EEEECCCCCCHHHHHHHHHhc--cCCCCCeEEECCEeHHhcCHHHHH-hhceEEccCcccccc-cHHHHHhcCCC-----
Confidence 999999999999999999998 789999999999999888776654 348899999998875 77777654310
Q ss_pred cCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
.+.+.++..+ .+.+.+.++..+.+..-..-+..||||||||++||||++++|++||||||||+||..+++.+
T Consensus 432 ---~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i 508 (571)
T TIGR02203 432 ---EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV 508 (571)
T ss_pred ---CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 0222222221 12233333322111111122346999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG 318 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~ 318 (325)
++.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+ ++++..+
T Consensus 509 ~~~L~~~~-~~~tiIiitH~~~~~~~--~D~ii~l~~g~i~~~g~~~--~l~~~~~ 559 (571)
T TIGR02203 509 QAALERLM-QGRTTLVIAHRLSTIEK--ADRIVVMDDGRIVERGTHN--ELLARNG 559 (571)
T ss_pred HHHHHHHh-CCCEEEEEehhhHHHHh--CCEEEEEeCCEEEeeCCHH--HHHHcCC
Confidence 99999885 45899999999987754 6999999999999999765 3454444
No 186
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-46 Score=340.05 Aligned_cols=224 Identities=21% Similarity=0.302 Sum_probs=179.4
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCHH
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~~ 151 (325)
.++++++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.... |++|+|.++|+++...+..
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 2 KIKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred ccEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 468999999999963 57999999999999999999999999999999999973111 3799999999998643221
Q ss_pred -HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020477 152 -ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG 227 (325)
Q Consensus 152 -~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG 227 (325)
...+..+++++|++.+++ .++.+++.+.... .+.. ...+...++.++++.+++.. +..++.+. .||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G 151 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI----HGIK--DKKELDKIVEWALKKAALWDEVKDDLKKSAL-KLSGG 151 (251)
T ss_pred HHHHHhheEEEecCCCcCC-CcHHHHHHhHHHh----cCCC--cHHHHHHHHHHHHHHcCCchhhhhHhhCCcc-cCCHH
Confidence 122345889999998887 7888887643211 1110 11223345667788887631 23455665 49999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++.|+
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~-~d~v~~l~~G~i~~~~~ 229 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRV-SDYTAFFLMGDLIEFNK 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHh-cCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999875 58999999999998887 69999999999999987
Q ss_pred ccH
Q 020477 308 ASI 310 (325)
Q Consensus 308 ~~~ 310 (325)
++.
T Consensus 230 ~~~ 232 (251)
T PRK14270 230 TEK 232 (251)
T ss_pred HHH
Confidence 653
No 187
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-46 Score=373.17 Aligned_cols=222 Identities=24% Similarity=0.339 Sum_probs=186.0
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.....+
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~~~ 78 (501)
T PRK11288 3 PYLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN--YQPDAGSILIDGQEMRFASTTAALA 78 (501)
T ss_pred ceEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCCCCHHHHHh
Confidence 58999999999964 5799999999999999999999999999999999998 6799999999999986544433333
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|++|++.+++.+++.+++....... ..+. ....+...++.++++.+++. +..++.+.+ |||||||||+||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qrv~la 152 (501)
T PRK11288 79 AGVAIIYQELHLVPEMTVAENLYLGQLPH--KGGI--VNRRLLNYEAREQLEHLGVD-IDPDTPLKY-LSIGQRQMVEIA 152 (501)
T ss_pred CCEEEEEechhccCCCCHHHHHHhccccc--ccCC--CCHHHHHHHHHHHHHHcCCC-CCcCCchhh-CCHHHHHHHHHH
Confidence 46899999998888889998876532110 0010 11233345677889999996 456677764 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||+.+|++|||||||+|||+.+++.+.++|+++.++|.|||+||||++++..+ ||++++|++|+++..++.
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~-~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFAL-CDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999977789999999999999887 699999999999877653
No 188
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-47 Score=326.74 Aligned_cols=221 Identities=26% Similarity=0.351 Sum_probs=186.9
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
||+++||+++.. ++.+|+++||++.+||++||+||||||||||||.|+|. ..|++|++.++|.++..+++.+..+.
T Consensus 1 mi~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe--l~p~~G~v~~~g~~l~~~~~~~lA~~ 76 (259)
T COG4559 1 MIRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE--LSPDSGEVTLNGVPLNSWPPEELARH 76 (259)
T ss_pred CeeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc--cCCCCCeEeeCCcChhhCCHHHHHHH
Confidence 689999999985 47899999999999999999999999999999999997 67999999999999999998876544
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
. +.++|+..+-..+++.+.+.++...... +. ...+....+..++.+.++. .+..+.+.. |||||+|||.+||
T Consensus 77 r-aVlpQ~s~laFpFtv~eVV~mGr~p~~~--g~---~~~e~~~i~~~ala~~d~~-~la~R~y~~-LSGGEqQRVqlAR 148 (259)
T COG4559 77 R-AVLPQNSSLAFPFTVQEVVQMGRIPHRS--GR---EPEEDERIAAQALAATDLS-GLAGRDYRT-LSGGEQQRVQLAR 148 (259)
T ss_pred h-hhcccCcccccceEHHHHHHhccccccc--CC---CchhhHHHHHHHHHHcChh-hhhccchhh-cCchHHHHHHHHH
Confidence 3 3558888776668999888876533211 11 1123334466778888885 567777764 9999999999999
Q ss_pred HHHh------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVL------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+|++ ++++|+||||||+||..++..++++.++++++|..|+.|-||++++..+ ||||++|.+|++++.|+++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~Y-aDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQY-ADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHh-hheeeeeeCCeEeecCCHHH
Confidence 9986 4458999999999999999999999999998889999999999999988 79999999999999999864
No 189
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.2e-46 Score=374.62 Aligned_cols=272 Identities=21% Similarity=0.296 Sum_probs=205.6
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.+++.... ..........++++|++++|+.+++++|+|+||+|++|++
T Consensus 266 ~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~ 343 (569)
T PRK10789 266 MIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQM 343 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCE
Confidence 34566677777788889999999999887654322111 1111112346999999999975446799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
++|+||||||||||+++|+|+ ++|++|+|.++|+++...+....+ ..+++++|++.+|++ |..+|+...
T Consensus 344 ~~ivG~sGsGKSTLl~ll~g~--~~p~~G~i~~~g~~~~~~~~~~~~-~~i~~v~q~~~lf~~-ti~~Ni~~~------- 412 (569)
T PRK10789 344 LGICGPTGSGKSTLLSLIQRH--FDVSEGDIRFHDIPLTKLQLDSWR-SRLAVVSQTPFLFSD-TVANNIALG------- 412 (569)
T ss_pred EEEECCCCCCHHHHHHHHhcc--cCCCCCEEEECCEEHhhCCHHHHH-hheEEEccCCeeccc-cHHHHHhcC-------
Confidence 999999999999999999998 789999999999999887765544 348899999998875 888887542
Q ss_pred cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
.++.+.++.... +.+.+..+..+.+..-...+..||||||||++|||||+++|++|||||||++||+++++.+
T Consensus 413 --~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i 490 (569)
T PRK10789 413 --RPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490 (569)
T ss_pred --CCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHH
Confidence 112222222221 1122333322111111222346999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~ 319 (325)
.+.|+++. +++|+|+|||+++.+.. +|+|++|++|++++.|+.+ ++++..+.
T Consensus 491 ~~~l~~~~-~~~tii~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~--~l~~~~~~ 542 (569)
T PRK10789 491 LHNLRQWG-EGRTVIISAHRLSALTE--ASEILVMQHGHIAQRGNHD--QLAQQSGW 542 (569)
T ss_pred HHHHHHHh-CCCEEEEEecchhHHHc--CCEEEEEeCCEEEEecCHH--HHHHcCCh
Confidence 99999985 57899999999988764 6999999999999999754 45555553
No 190
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-46 Score=343.39 Aligned_cols=220 Identities=20% Similarity=0.321 Sum_probs=176.8
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCC-
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLE- 147 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~- 147 (325)
..++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++ |++|+|.++|+++..
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM--NDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--ccccCCCCCceEEEECCEEcccc
Confidence 4568999999999964 5799999999999999999999999999999999998 33 689999999998753
Q ss_pred -CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCC
Q 020477 148 -MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEG 223 (325)
Q Consensus 148 -~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~ 223 (325)
.+.... +..++|++|++.+++. ++.+++.+..... +. . .+..+.+.++++.+++. .+..++.+. +
T Consensus 86 ~~~~~~~-~~~i~~v~q~~~l~~~-tv~enl~~~~~~~----~~---~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~ 154 (269)
T PRK14259 86 RVDPVEV-RRRIGMVFQQPNPFPK-SIYENIAFGARIN----GY---T-GDMDELVERSLRKAAVWDECKDKLNESGY-S 154 (269)
T ss_pred cCCHHHH-hhceEEEccCCccchh-hHHHHHhhhhhhc----CC---c-HHHHHHHHHHHHHhCCcchhhhhhCCCcc-c
Confidence 223332 2358899999988874 8888876543211 11 1 11223445567777652 134566665 4
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC----
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED---- 299 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~---- 299 (325)
|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+ ||++++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~-~d~i~~l~~~~~~ 232 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRV-SDMTAFFNAEEVE 232 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-cCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999854 68999999999999887 699999996
Q ss_pred -------CEEEEEcCccH
Q 020477 300 -------GRIIKTGDASI 310 (325)
Q Consensus 300 -------G~iv~~g~~~~ 310 (325)
|++++.|+++.
T Consensus 233 ~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 233 GGSGGKVGYLVEFNETKK 250 (269)
T ss_pred cccccccceEEEeCCHHH
Confidence 67899998753
No 191
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.1e-46 Score=340.75 Aligned_cols=214 Identities=24% Similarity=0.360 Sum_probs=171.1
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|+.+++++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+....+ ..
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~-~~ 77 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--YVPENGRVLVDGHDLALADPAWLR-RQ 77 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCeehHhcCHHHHh-hc
Confidence 478999999964346799999999999999999999999999999999998 679999999999988655544332 35
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH-----HhHHHHHHhc--CCccccccccCCCCCChHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERL--SMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQ 230 (325)
+++++|++.+++ .++.+++..... . ....... ..+.+.++.+ ++. ..+++.+. +|||||||
T Consensus 78 i~~~~q~~~~~~-~tv~~nl~~~~~------~---~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~-~LSgG~~q 145 (237)
T cd03252 78 VGVVLQENVLFN-RSIRDNIALADP------G---MSMERVIEAAKLAGAHDFISELPEGYD-TIVGEQGA-GLSGGQRQ 145 (237)
T ss_pred EEEEcCCchhcc-chHHHHhhccCC------C---CCHHHHHHHHHHcCcHHHHHhCccccc-chhhcCCC-cCCHHHHH
Confidence 889999987764 588877654210 0 0011111 1233445555 332 23455555 59999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ |.|||++|||++++. . ||++++|++|++++.|+++
T Consensus 146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~-~-~d~v~~l~~G~i~~~~~~~ 221 (237)
T cd03252 146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVK-N-ADRIIVMEKGRIVEQGSHD 221 (237)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHH-h-CCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999864 889999999999985 4 6999999999999998764
No 192
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-46 Score=338.61 Aligned_cols=221 Identities=23% Similarity=0.371 Sum_probs=178.3
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCCCCH
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~~~~ 150 (325)
++|+++|+++.|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|.++...+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 2 PIIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM--NDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred ceEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc--ccCCCCCCcceEEEECCEEcccchh
Confidence 47999999999963 5799999999999999999999999999999999998 34 389999999998764221
Q ss_pred H-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020477 151 E-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG 226 (325)
Q Consensus 151 ~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg 226 (325)
. ...+..++++||++.+++ .++.+++....... +.. ........+.+.++.+++.. ...++.+. +|||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~ 149 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIH----GVK--SKHKLDRIVEESLKKAALWDEVKSELNKPGT-RLSG 149 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHc----CCC--cHHHHHHHHHHHHHHcCCCchhHHHHhCChh-hcCH
Confidence 1 122345889999998877 78888876543211 111 11222344566778888742 23556665 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++.+..+ +|++++|++|+++..|
T Consensus 150 Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~-~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 150 GQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRI-ADYIAFMYRGELIEYG 227 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHh-CCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999865 68999999999988877 6999999999999999
Q ss_pred CccH
Q 020477 307 DASI 310 (325)
Q Consensus 307 ~~~~ 310 (325)
+++.
T Consensus 228 ~~~~ 231 (250)
T PRK14262 228 PTRE 231 (250)
T ss_pred CHHH
Confidence 7653
No 193
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-46 Score=333.79 Aligned_cols=209 Identities=25% Similarity=0.347 Sum_probs=172.3
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---HHHh
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---EERS 154 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---~~~~ 154 (325)
+.+ ||+++|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+ ++|++|+|.++|.++..... ....
T Consensus 2 ~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 2 LCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL--EKPDGGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred cee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEecccccchhhhhhH
Confidence 455 99999975 444 99999999 99999999999999999999998 67999999999998753221 1111
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..++|++|++.+++..++.+++...... . .......++.++++.+++. +..++.+.+ ||||||||++|
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~----~-----~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~l 142 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKR----K-----RNREDRISVDELLDLLGLD-HLLNRYPAQ-LSGGEKQRVAL 142 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhh----C-----CHHHHHHHHHHHHHHcCCH-hHhhcCccc-CCHHHHHHHHH
Confidence 23588999999888888988887654211 0 1122234567789999996 456677664 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||||+.+|++|||||||+|||+.+++.+.++|++++++ |.|||++|||++++..+ +|++++|++|++++.|
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~g 214 (214)
T cd03297 143 ARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYL-ADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHh-cCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999765 88999999999998877 6999999999998765
No 194
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.1e-45 Score=374.66 Aligned_cols=274 Identities=19% Similarity=0.236 Sum_probs=203.9
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.++.................++++||+|+|++ ++++|+|+||+|++||+
T Consensus 285 l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~l~~i~~~i~~G~~ 363 (585)
T TIGR01192 285 LIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFAN-SSQGVFDVSFEAKAGQT 363 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCC-CCccccceeEEEcCCCE
Confidence 34566667777777788888888888776643321111110011112346999999999974 35689999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
++|+||||||||||+++|+|+ ++|++|+|.++|.++...+....+ ..+++++|++.+|+ .|..+|+...
T Consensus 364 ~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~~-~~i~~v~q~~~lf~-~ti~~Ni~~~------- 432 (585)
T TIGR01192 364 VAIVGPTGAGKTTLINLLQRV--YDPTVGQILIDGIDINTVTRESLR-KSIATVFQDAGLFN-RSIRENIRLG------- 432 (585)
T ss_pred EEEECCCCCCHHHHHHHHccC--CCCCCCEEEECCEEhhhCCHHHHH-hheEEEccCCccCc-ccHHHHHhcC-------
Confidence 999999999999999999998 789999999999999887766544 34889999998886 4788877543
Q ss_pred cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
.++.+.++.... +.+.+..+....+..-...+..||||||||++|||||+++|++|||||||++||+.+++.+
T Consensus 433 --~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i 510 (585)
T TIGR01192 433 --REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510 (585)
T ss_pred --CCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 112222222222 2223333321111111222346999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
.+.|.++. +++|+|+|||+++.+.. +|+|++|++|++++.|+.+ ++++.+|.|
T Consensus 511 ~~~l~~~~-~~~tvI~isH~~~~~~~--~d~i~~l~~G~i~~~g~~~--~l~~~~~~y 563 (585)
T TIGR01192 511 KNAIDALR-KNRTTFIIAHRLSTVRN--ADLVLFLDQGRLIEKGSFQ--ELIQKDGRF 563 (585)
T ss_pred HHHHHHHh-CCCEEEEEEcChHHHHc--CCEEEEEECCEEEEECCHH--HHHHCCChH
Confidence 99999885 47899999999998864 6999999999999999754 555666543
No 195
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.5e-46 Score=335.45 Aligned_cols=217 Identities=25% Similarity=0.305 Sum_probs=176.1
Q ss_pred cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCHH
Q 020477 77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~~ 151 (325)
.+.++|++++|++. .+++|+|+||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|+++.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~--~~~~~~~~G~i~~~g~~~~~---~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR--VEGGGTTSGQILFNGQPRKP---D 77 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc--cCCCCCCceEEEECCEECCh---H
Confidence 57899999999754 26899999999999999999999999999999999998 56 899999999998742 2
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHH-HHHhcCCccccccccCCCCCChHHHH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYP-KLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
..+.++++++|++.+++.+++.+++.+..... .............+.+ .++.+++. +..++.+. .|||||+|
T Consensus 78 -~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~q 150 (226)
T cd03234 78 -QFQKCVAYVRQDDILLPGLTVRETLTYTAILR----LPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVK-GISGGERR 150 (226)
T ss_pred -HhcccEEEeCCCCccCcCCcHHHHHHHHHHhh----cccccchHHHHHHHHHHHHHhhcch-hhhccccc-CcCHHHHH
Confidence 22346889999999998899999886543211 0000011111123344 67888875 45566665 49999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh-hHHhhhCCcEEEEEeCCEEEEEc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYR-RLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~-~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+++.|+|++||++ +.+..+ +|++++|++|++++.|
T Consensus 151 rl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~-~d~i~~l~~G~i~~~g 226 (226)
T cd03234 151 RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRL-FDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHh-CCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999876688999999998 467776 6999999999998765
No 196
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.3e-46 Score=330.81 Aligned_cols=190 Identities=59% Similarity=0.998 Sum_probs=161.1
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+..+.|++|+|.++|+++...+...+.+..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 579999999999999999999999999999999999732368999999999999876654443445
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++|++.+++..++.+++ + . ....|||||+||++||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~l-----------------------------~----------~-~~~~LS~G~~qrv~lara 118 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL-----------------------------R----------Y-VNEGFSGGEKKRNEILQL 118 (200)
T ss_pred EEEeecChhhccCccHHHHH-----------------------------h----------h-ccccCCHHHHHHHHHHHH
Confidence 88999998776654443221 0 0 112499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh-hCCcEEEEEeCCEEEEEcCccH
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF-IKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~-~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|+.+|++|||||||++||+.+++.+.+.|.++++++.|||++||+++.+.. + +|++++|++|++++.|+.+.
T Consensus 119 l~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~-~d~i~~l~~G~i~~~~~~~~ 191 (200)
T cd03217 119 LLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIK-PDRVHVLYDGRIVKSGDKEL 191 (200)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhh-CCEEEEEECCEEEEEccHHH
Confidence 999999999999999999999999999999987668899999999998876 4 69999999999999996543
No 197
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-46 Score=344.66 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=178.2
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCC--
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEM-- 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~-- 148 (325)
..++|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+... .|++|+|.++|+++...
T Consensus 36 ~~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 36 GETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 4678999999999964 5799999999999999999999999999999999998321 16899999999987532
Q ss_pred CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020477 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFS 225 (325)
Q Consensus 149 ~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LS 225 (325)
+.... +..++|++|++.+++. ++.+++...... .+. . .+...++.++++.+++.. +.+++.+. +||
T Consensus 114 ~~~~~-~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~---~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~-~LS 182 (285)
T PRK14254 114 DPVAL-RRRIGMVFQKPNPFPK-SIYDNVAYGLKI----QGY---D-GDIDERVEESLRRAALWDEVKDQLDSSGL-DLS 182 (285)
T ss_pred chHhh-hccEEEEecCCccCcC-CHHHHHHHHHHH----cCC---c-HHHHHHHHHHHHHcCCCchhHHHHhCCcc-cCC
Confidence 22222 3468899999988775 888887654321 111 1 122345677888888742 24566665 499
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEE-EEeCCEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH-IMEDGRIIK 304 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~-vl~~G~iv~ 304 (325)
|||||||+|||||+.+|+||||||||+|||+.+++.+.++|++++++ .|||++|||++++..+ +|+++ +|++|++++
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~-~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARI-SDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhh-cCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 7999999999999887 68865 579999999
Q ss_pred EcCcc
Q 020477 305 TGDAS 309 (325)
Q Consensus 305 ~g~~~ 309 (325)
.|+++
T Consensus 261 ~g~~~ 265 (285)
T PRK14254 261 FDDTD 265 (285)
T ss_pred eCCHH
Confidence 98764
No 198
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-46 Score=338.32 Aligned_cols=220 Identities=23% Similarity=0.348 Sum_probs=177.2
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCCCCH
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~~~~ 150 (325)
++|+++|++++|+. +++|+++||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|+++.....
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 3 NIISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM--NDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred ceEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--cccccCCCcceEEEECCEEcccccc
Confidence 47999999999964 5799999999999999999999999999999999998 33 479999999998753221
Q ss_pred H-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020477 151 E-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG 226 (325)
Q Consensus 151 ~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg 226 (325)
. ...+..+++++|++.+++ .++.+++...... .+.. ........+.++++.+++.. ..+++.+. +|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~ 150 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKI----AGVK--DKELIDQRVEESLKQAAIWKETKDNLDRNAQ-AFSG 150 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHH----cCCC--CHHHHHHHHHHHHHHcCCCcchHHHhccChh-hCCH
Confidence 1 122346889999998776 6888887654321 1111 11122344566778888731 23455555 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||+||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||+||||++++..+ +|++++|++|++++.|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~-~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRI-SDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhh-cCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999854 58999999999998887 6999999999999998
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+.+
T Consensus 229 ~~~ 231 (251)
T PRK14251 229 PTE 231 (251)
T ss_pred CHH
Confidence 765
No 199
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.2e-46 Score=357.98 Aligned_cols=211 Identities=22% Similarity=0.309 Sum_probs=177.1
Q ss_pred EEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---HHHhhccE
Q 020477 82 GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---EERSLAGL 158 (325)
Q Consensus 82 ~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---~~~~~~~i 158 (325)
||+++|++ +. + ++||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++..... ....+..+
T Consensus 4 ~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl--~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 4 RFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL--TRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECccCccccccchhhCCe
Confidence 89999964 33 5 99999999999999999999999999999998 67999999999998854321 01112458
Q ss_pred EEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH
Q 020477 159 FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238 (325)
Q Consensus 159 ~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL 238 (325)
+|+||++.+|+.+++.+++.+.... . ...+...++.++++.+++. +..++.+.+ |||||||||+|||||
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~----~-----~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LSgGqkqRvalAraL 146 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKR----A-----RPSERRISFERVIELLGIG-HLLGRLPGR-LSGGEKQRVAIGRAL 146 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhc----c-----ChhHHHHHHHHHHHHcCCh-hHhcCChhh-CCHHHHHHHHHHHHH
Confidence 8999999999999999988654321 0 0122234577889999996 567777765 999999999999999
Q ss_pred HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 239 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+.+|++|||||||+|||+.+++.+++.|+++.++ |.|||+||||++++..+ +|++++|++|++++.|+++.
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRL-ADRVVVLEDGRVAAAGPIAE 218 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEeCCEEEEECCHHH
Confidence 9999999999999999999999999999999765 88999999999998877 69999999999999997653
No 200
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-46 Score=360.03 Aligned_cols=271 Identities=23% Similarity=0.301 Sum_probs=200.5
Q ss_pred hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCC-CCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEE
Q 020477 30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSS-DGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH 108 (325)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~ 108 (325)
...+|+..++.-|.+...++.-..+.+...+....... ..+.......|+++||++.|++ ++++|+++||+|++||.+
T Consensus 303 qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~dV~f~y~~-k~~iL~gvsf~I~kGekV 381 (591)
T KOG0057|consen 303 QLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFDDVHFSYGP-KRKVLKGVSFTIPKGEKV 381 (591)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEEeeEEEeCC-CCceecceeEEecCCCEE
Confidence 34456666666666666665555554432221111111 1111223345999999999985 456999999999999999
Q ss_pred EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020477 109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL 188 (325)
Q Consensus 109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
||+|+|||||||++|+|.++ +. ++|+|++||+++...+....++ .|++|||+..+|.+ |+..|+. +
T Consensus 382 aIvG~nGsGKSTilr~LlrF--~d-~sG~I~IdG~dik~~~~~SlR~-~Ig~VPQd~~LFnd-TIl~NI~---------Y 447 (591)
T KOG0057|consen 382 AIVGSNGSGKSTILRLLLRF--FD-YSGSILIDGQDIKEVSLESLRQ-SIGVVPQDSVLFND-TILYNIK---------Y 447 (591)
T ss_pred EEECCCCCCHHHHHHHHHHH--hc-cCCcEEECCeeHhhhChHHhhh-heeEeCCcccccch-hHHHHhh---------c
Confidence 99999999999999999998 55 8999999999999888766543 48999999988864 5555553 3
Q ss_pred CCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH
Q 020477 189 GQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263 (325)
Q Consensus 189 ~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~ 263 (325)
+.+.++.++..+ .+.+.+.+++-+....-...+..|||||||||+||||++.+|+|+++|||||+||.+++++++
T Consensus 448 Gn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~ 527 (591)
T KOG0057|consen 448 GNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREIL 527 (591)
T ss_pred CCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHH
Confidence 444444444332 233445555433222222333359999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 264 ~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
+.+.+. ..++|+|+|-||++++.. +|+|+++++|++.+.|+.+ +++...+++
T Consensus 528 ~~i~~~-~~~rTvI~IvH~l~ll~~--~DkI~~l~nG~v~e~gth~--ell~~s~~~ 579 (591)
T KOG0057|consen 528 DMIMDV-MSGRTVIMIVHRLDLLKD--FDKIIVLDNGTVKEYGTHS--ELLAPSELY 579 (591)
T ss_pred HHHHHh-cCCCeEEEEEecchhHhc--CCEEEEEECCeeEEeccHH--HHhhhhhHH
Confidence 999984 357899999999999886 5999999999999999754 555555543
No 201
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2e-46 Score=335.44 Aligned_cols=208 Identities=26% Similarity=0.409 Sum_probs=166.8
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|+++.|++..+.+|+|+||+|++|++++|+||||||||||+++|+|+ .+|++|+|.++|+++...+.... +..
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~-~~~ 79 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL--YKPTSGSVLLDGTDIRQLDPADL-RRN 79 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCeEEECCEEhHHCCHHHH-Hhh
Confidence 789999999964335699999999999999999999999999999999998 67899999999998765544333 235
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC----------CCCCChH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV----------NEGFSGG 227 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----------~~~LSgG 227 (325)
+++++|++.+++ .++.+++..... .... ..+.+.++.+++. +.+++.+ ..+||||
T Consensus 80 i~~~~q~~~~~~-~tv~e~l~~~~~---------~~~~----~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG 144 (220)
T cd03245 80 IGYVPQDVTLFY-GTLRDNITLGAP---------LADD----ERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGG 144 (220)
T ss_pred EEEeCCCCcccc-chHHHHhhcCCC---------CCCH----HHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHH
Confidence 889999998776 577776543210 0111 1234455666664 3333322 1259999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||||++|||||+.+|++|||||||+|||+.+++.+++.|++++++ .|||++|||++++ .+ ||++++|++|++++.|
T Consensus 145 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~-~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 145 QRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DL-VDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-Hh-CCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999998765 8999999999987 45 6999999999998653
No 202
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=340.61 Aligned_cols=225 Identities=19% Similarity=0.277 Sum_probs=180.6
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCCH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~~ 150 (325)
..++|+++||+++|++ +++|+|+||+|.+||+++|+|+||||||||+++|+|+... .|++|+|.++|+++.....
T Consensus 17 ~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 17 EEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 4568999999999963 6799999999999999999999999999999999998311 2589999999998853211
Q ss_pred -HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020477 151 -EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG 226 (325)
Q Consensus 151 -~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg 226 (325)
....+..++|+||++.+++ .++.+++...... .+. ....+....+.+.++.+++.. +..++.+. .|||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~----~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~-~LS~ 166 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFA-KSIYENITFALER----AGV--KDKKVLDEIVETSLKQAALWDQVKDDLHKSAL-TLSG 166 (267)
T ss_pred ChHHHhcceEEEecCCcccc-ccHHHHHHhHHHh----cCC--CCHHHHHHHHHHHHHHcCCCchhhhhhcCCcc-cCCH
Confidence 1122346899999988877 5888887654321 111 112223345667788888741 24556665 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||+||++|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQAARA-SDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHh-cCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999854 68999999999998877 6999999999999999
Q ss_pred CccH
Q 020477 307 DASI 310 (325)
Q Consensus 307 ~~~~ 310 (325)
+++.
T Consensus 245 ~~~~ 248 (267)
T PRK14237 245 KTRN 248 (267)
T ss_pred CHHH
Confidence 8753
No 203
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.8e-46 Score=336.47 Aligned_cols=215 Identities=20% Similarity=0.307 Sum_probs=181.7
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++ +.+|+|+||+|.+||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++..... .+..
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~i~g~~~~~~~~---~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL--EQPDSGRIRLNGQDATRVHA---RDRK 73 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCCh---hhcC
Confidence 478999999974 5799999999999999999999999999999999998 67899999999998865432 1346
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++|++.+++..+..+++...... .+ .......+.+.++++.+++. +..++.+.. ||+||+||++||||
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-lS~G~~qrl~lara 144 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEI----RK---HPKAKIKARVEELLELVQLE-GLGDRYPNQ-LSGGQRQRVALARA 144 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHh----cC---CCHHHHHHHHHHHHHHcCCH-hHhhCChhh-CCHHHHHHHHHHHH
Confidence 88999999988888888887643211 01 11122334567789999985 566777664 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+.+|+++||||||+|||+.+++.+.+.|.++.++ ++|||++||+++++..+ ||++++|++|++++.|+.+
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~-~d~i~~l~~g~i~~~~~~~ 216 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEV-ADRIVVMSNGKIEQIGSPD 216 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh-cCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999998765 78999999999988877 6999999999999998765
No 204
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-46 Score=335.57 Aligned_cols=214 Identities=25% Similarity=0.358 Sum_probs=181.6
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++|++++|++ ++|+|+||+|.+||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...... +..
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~--~~p~~G~v~i~g~~~~~~~~~---~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF--IKPDSGKILLNGKDITNLPPE---KRD 72 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEcCcCChh---HcC
Confidence 478999999963 389999999999999999999999999999999998 689999999999998765432 246
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++..++.+++...... .+ ....+....+.++++.+++. +..++.+.+ |||||+||++||||
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~lara 143 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKK----RK---VDKKEIERKVLEIAEMLGID-HLLNRKPET-LSGGEQQRVAIARA 143 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hHHhcCccc-CCHHHHHHHHHHHH
Confidence 88999999888888998887654321 11 11223334567788999995 567777764 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++||+++++..+ +|++++|++|++++.|+.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 215 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL-ADKVAIMLNGKLIQVGKPE 215 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999998654 88999999999998877 6999999999999998764
No 205
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.2e-46 Score=371.42 Aligned_cols=224 Identities=25% Similarity=0.367 Sum_probs=184.6
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC--CccEEEECCEeCCCCCHHHHh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--TEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p--~~G~I~~~g~~i~~~~~~~~~ 154 (325)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|+++...+.....
T Consensus 1 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~--~~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (500)
T TIGR02633 1 LLEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV--YPHGTWDGEIYWSGSPLKASNIRDTE 76 (500)
T ss_pred CEEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCCeEEEECCEECCCCCHHHHH
Confidence 4799999999963 5799999999999999999999999999999999998 454 799999999998766544433
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..++|+||++.+++.+++.+++........ .. ......+...++.++++.+++.....++.+. +|||||||||+|
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~i 152 (500)
T TIGR02633 77 RAGIVIIHQELTLVPELSVAENIFLGNEITL--PG-GRMAYNAMYLRAKNLLRELQLDADNVTRPVG-DYGGGQQQLVEI 152 (500)
T ss_pred hCCEEEEeeccccCCCCcHHHHHHhhccccc--cc-cccCHHHHHHHHHHHHHHcCCCCCcccCchh-hCCHHHHHHHHH
Confidence 4568999999988888899888765421100 00 0011223345677889999996322345565 499999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||+||||++++..+ ||++++|++|+++..++++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~-~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAV-CDTICVIRDGQHVATKDMS 226 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHh-CCEEEEEeCCeEeeecCcc
Confidence 9999999999999999999999999999999999987789999999999999887 6999999999999888764
No 206
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=5.4e-46 Score=332.94 Aligned_cols=214 Identities=26% Similarity=0.371 Sum_probs=177.7
Q ss_pred cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--
Q 020477 77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-- 152 (325)
Q Consensus 77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~-- 152 (325)
.++++|+++.|+++ .+.+|+++||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+...
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~ 78 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL--RSVQEGSLKVLGQELYGASEKELV 78 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEhHhcCHhHHH
Confidence 37899999999642 15699999999999999999999999999999999998 6899999999999886655432
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
..+.++++++|++.+++..++.+++....... . .....+....+.++++.+++. +..++.+. .||||||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~----~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~lS~G~~qrv 150 (220)
T TIGR02982 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQ----P--NLSYQEARERARAMLEAVGLG-DHLDYYPH-NLSGGQKQRV 150 (220)
T ss_pred HHHhheEEEcCChhhcCCCCHHHHHHHHHHhc----c--CCCHHHHHHHHHHHHHHcCCh-hhhhcChh-hCCHHHHHHH
Confidence 22346899999998888889888876542211 0 112233445678889999995 55666665 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .++|||++|||++.. .+ ||++++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~-~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DV-ADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hh-CCEEEEEECCEE
Confidence 999999999999999999999999999999999999875 488999999999865 45 799999999986
No 207
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-46 Score=337.67 Aligned_cols=219 Identities=22% Similarity=0.330 Sum_probs=176.6
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCC-CC
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLE-ME 149 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~-~~ 149 (325)
++++++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++ |++|+|.++|.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 2 NKFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM--NDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred CeEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh--cccccCCCCceEEEECCEEcccccc
Confidence 36899999999963 6799999999999999999999999999999999998 44 369999999998752 22
Q ss_pred HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020477 150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG 226 (325)
Q Consensus 150 ~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg 226 (325)
.... +..++|++|++.+++ .++.+++...... .+.. ......+++.+.++.+++.. +..++.+. +|||
T Consensus 78 ~~~~-~~~i~~~~q~~~~~~-~tv~~~l~~~~~~----~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~LS~ 148 (249)
T PRK14253 78 VADL-RIKVGMVFQKPNPFP-MSIYENVAYGLRA----QGIK--DKKVLDEVVERSLRGAALWDEVKDRLKSHAF-GLSG 148 (249)
T ss_pred hHHH-HhheeEEecCCCcCc-ccHHHHHHhHHHh----cCCC--chHHHHHHHHHHHHHcCCchhhhHHhhcCcc-cCCH
Confidence 2222 246889999998887 7888887654211 1110 11222344566677777632 23455555 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||+|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++||+++++..+ ||++++|++|++++.|
T Consensus 149 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~-~d~i~~l~~G~i~~~g 226 (249)
T PRK14253 149 GQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRI-SDRTAFFLMGELVEHD 226 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHh-CCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 48999999999998887 6999999999999998
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+++
T Consensus 227 ~~~ 229 (249)
T PRK14253 227 DTQ 229 (249)
T ss_pred CHH
Confidence 764
No 208
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=343.50 Aligned_cols=224 Identities=22% Similarity=0.328 Sum_probs=179.5
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CC--CCccEEEECCEeCCCCCH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YE--VTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~--p~~G~I~~~g~~i~~~~~ 150 (325)
..++|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.. .+ |++|+|.++|+++.....
T Consensus 36 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred CceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 4668999999999964 569999999999999999999999999999999999731 12 499999999998754221
Q ss_pred -HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCCCh
Q 020477 151 -EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGFSG 226 (325)
Q Consensus 151 -~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~LSg 226 (325)
....+..++|++|++.+++. ++.+++.+.... .+.. ........+.++++.+++. .+..++.+. .|||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LSg 185 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRL----HGIN--DKKQLEEIVEKSLRKAALWDEVSDRLDKNAL-GLSG 185 (286)
T ss_pred chHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHh----cCCC--cHHHHHHHHHHHHHHhCCccchhhHhhCChh-hCCH
Confidence 11223468999999988874 888888654211 1111 1122234566677777763 134566665 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ ||++++|++|+++..|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~-~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRV-SDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHh-CCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999865 58999999999998887 6999999999999998
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+++
T Consensus 264 ~~~ 266 (286)
T PRK14275 264 PTA 266 (286)
T ss_pred CHH
Confidence 764
No 209
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=336.74 Aligned_cols=220 Identities=23% Similarity=0.343 Sum_probs=176.7
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCC--CHH
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEM--EPE 151 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~--~~~ 151 (325)
+|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+....| ++|+|.++|+++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 5899999999964 579999999999999999999999999999999999732113 699999999988642 222
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGE 228 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGq 228 (325)
.. +..+++++|++.+++ .++.+++...... .+.. ...+..+.+.+.++.+++.. +..++.+. +|||||
T Consensus 81 ~~-~~~i~~~~q~~~~~~-~t~~~ni~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS~G~ 151 (250)
T PRK14240 81 QL-RKRVGMVFQQPNPFP-MSIYDNVAYGPRT----HGIK--DKKKLDEIVEKSLKGAALWDEVKDRLKKSAL-GLSGGQ 151 (250)
T ss_pred HH-hccEEEEecCCccCc-ccHHHHHHHHHHh----cCCC--CHHHHHHHHHHHHHHcCCchhhHHHHhcCCC-CCCHHH
Confidence 22 235889999988777 7888887653211 1111 11223345667777877631 23456665 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++.+..+ +|++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~-~d~v~~l~~G~i~~~~~~ 229 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRI-SDKTAFFLNGEIVEFGDT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhh-CCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999854 68999999999988887 699999999999999876
Q ss_pred c
Q 020477 309 S 309 (325)
Q Consensus 309 ~ 309 (325)
+
T Consensus 230 ~ 230 (250)
T PRK14240 230 V 230 (250)
T ss_pred H
Confidence 5
No 210
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-46 Score=388.83 Aligned_cols=262 Identities=23% Similarity=0.314 Sum_probs=204.8
Q ss_pred hhhhhhccHHHHHHHhhccCCCCCCCCCC-CCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccH
Q 020477 41 NYHRHHLSLNRVTAALSAVDSPLKSSSDG-QDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGK 118 (325)
Q Consensus 41 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGK 118 (325)
.+..+..+..++.++++..+......... ........++++||.|+|+.. +..+|+|+||+|++|+.+||||||||||
T Consensus 313 ~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGK 392 (1228)
T KOG0055|consen 313 AFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGK 392 (1228)
T ss_pred HHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCH
Confidence 45666777777777777555543332111 122345689999999999864 2479999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHH
Q 020477 119 STLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEF 198 (325)
Q Consensus 119 STLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (325)
||++++|.++ |.|++|+|.+||.++..+..+..+. .+++|+|+|.+|. .|..+|+.++ .++++.++.
T Consensus 393 ST~i~LL~Rf--ydP~~G~V~idG~di~~~~~~~lr~-~iglV~QePvlF~-~tI~eNI~~G---------~~dat~~~i 459 (1228)
T KOG0055|consen 393 STLIQLLARF--YDPTSGEVLIDGEDIRNLNLKWLRS-QIGLVSQEPVLFA-TTIRENIRYG---------KPDATREEI 459 (1228)
T ss_pred HHHHHHHHHh--cCCCCceEEEcCccchhcchHHHHh-hcCeeeechhhhc-ccHHHHHhcC---------CCcccHHHH
Confidence 9999999998 8999999999999999988776554 5788999997765 5788877543 344444443
Q ss_pred HHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC
Q 020477 199 YAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK 273 (325)
Q Consensus 199 ~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g 273 (325)
.+. +.+.+..+....+..-..-+.+||||||||+||||||+++|+|||||||||+||+++++.+.+.|.++. .|
T Consensus 460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~g 538 (1228)
T KOG0055|consen 460 EEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KG 538 (1228)
T ss_pred HHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cC
Confidence 322 334455554443333333334699999999999999999999999999999999999999999999875 46
Q ss_pred cEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 274 NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 274 ~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
+|-|+|+|++..+.. +|+|++|++|+|++.|+++ ++++..|.|
T Consensus 539 rTTivVaHRLStIrn--aD~I~v~~~G~IvE~G~h~--ELi~~~G~Y 581 (1228)
T KOG0055|consen 539 RTTIVVAHRLSTIRN--ADKIAVMEEGKIVEQGTHD--ELIALGGIY 581 (1228)
T ss_pred CeEEEEeeehhhhhc--cCEEEEEECCEEEEecCHH--HHHhccchH
Confidence 788999999999886 6999999999999999765 566666643
No 211
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=337.19 Aligned_cols=220 Identities=20% Similarity=0.339 Sum_probs=176.7
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCCCC--C
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLLEM--E 149 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~~~--~ 149 (325)
+++++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+|+|+|+ ++| ++|+|.++|+++... .
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM--HDLTPGARVTGRILLDGQDIYGPRVD 79 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCcCCCCceeEEECCEEcccCccC
Confidence 7899999999963 5799999999999999999999999999999999998 444 389999999988642 2
Q ss_pred HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCCCh
Q 020477 150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGFSG 226 (325)
Q Consensus 150 ~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~LSg 226 (325)
... .+..++|++|++.+++..++.+++...... .+.. ..++..+.+.+.++.+++. .+..++.+. .|||
T Consensus 80 ~~~-~~~~i~~~~q~~~~~~~~t~~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS~ 151 (252)
T PRK14272 80 PVA-MRRRVGMVFQKPNPFPTMSVFDNVVAGLKL----AGIR--DRDHLMEVAERSLRGAALWDEVKDRLKTPAT-GLSG 151 (252)
T ss_pred HHH-hhceeEEEeccCccCcCCCHHHHHHHHHHh----cCCC--CHHHHHHHHHHHHHHcCcchhhhhhhcCCcc-cCCH
Confidence 222 234588999999888888998887654321 1110 1122233445556666542 123456665 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus 152 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 152 GQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARV-SDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHh-CCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 68999999999998877 6999999999999998
Q ss_pred CccH
Q 020477 307 DASI 310 (325)
Q Consensus 307 ~~~~ 310 (325)
+++.
T Consensus 230 ~~~~ 233 (252)
T PRK14272 230 PTDQ 233 (252)
T ss_pred CHHH
Confidence 7653
No 212
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=336.61 Aligned_cols=222 Identities=21% Similarity=0.338 Sum_probs=177.5
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-----ccEEEECCEeCCCCC
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-----EGSVVFKGENLLEME 149 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-----~G~I~~~g~~i~~~~ 149 (325)
.++++++||+++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+ ++|+ +|+|.++|+++...+
T Consensus 2 ~~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 2 DPKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM--NDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred CceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCccccCCcccEEEECCEEccccc
Confidence 357999999999963 5799999999999999999999999999999999998 5565 699999999875422
Q ss_pred H-HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020477 150 P-EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFS 225 (325)
Q Consensus 150 ~-~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LS 225 (325)
. ....+..++|++|++.+++. ++.+++.+.... .+.. ...+....+.+.++.+++.. +..++.+. .||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS 149 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRM----LGTT--AQSRLDEVVEKSLRQAALWDEVKDNLHKSGL-ALS 149 (251)
T ss_pred cChHHhhceEEEEecCCccCcC-cHHHHHhhHHHh----cCCC--hhhHHHHHHHHHHHHhCCchhhhhHhhCCcc-cCC
Confidence 1 11223468999999988875 888887654221 1111 11122234555667776531 23556665 499
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
|||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. ++.|||++|||++++..+ ||++++|++|++++.
T Consensus 150 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~-~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARA-SDWTGFLLTGDLVEY 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhh-CCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999985 578999999999999887 699999999999999
Q ss_pred cCccH
Q 020477 306 GDASI 310 (325)
Q Consensus 306 g~~~~ 310 (325)
|+++.
T Consensus 228 ~~~~~ 232 (251)
T PRK14249 228 GRTGE 232 (251)
T ss_pred CCHHH
Confidence 87653
No 213
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-46 Score=372.53 Aligned_cols=230 Identities=21% Similarity=0.300 Sum_probs=186.3
Q ss_pred CCcEEEEEEEEEECC-CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-CCccEEEECCEeCCCCCHHH
Q 020477 75 QPLLQVTGLTAVIAE-SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-VTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~-~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-p~~G~I~~~g~~i~~~~~~~ 152 (325)
.++|+++||++.|+. +++.+|+|+||+|++||+++|+|+||||||||+|+|+|+ ++ |++|+|.++|+++...+...
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA--YPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC--CCCCCCcEEEECCEECCCCCHHH
Confidence 458999999999952 235699999999999999999999999999999999998 56 58999999999886544332
Q ss_pred HhhccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 153 RSLAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 153 ~~~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
..+.+++|++|++ .+++.+++.+++........ .........+...++.++++.+++..+..++.+.+ ||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgG~k 411 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRF--TGGSRIDDAAELKTILESIQRLKVKTASPELAIAR-LSGGNQ 411 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhh--ccCcccChHHHHHHHHHHHHhcCccCCCccccccc-CCHHHH
Confidence 2234688999996 36777898888765421100 00000112233356778899999953456777765 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++..+ ||++++|++|+++..|+++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~-~d~v~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGL-SDRVLVMHEGKLKGDLINH 490 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999999987789999999999999887 6999999999999988765
Q ss_pred H
Q 020477 310 I 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 491 ~ 491 (506)
T PRK13549 491 N 491 (506)
T ss_pred c
Confidence 3
No 214
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=335.36 Aligned_cols=223 Identities=22% Similarity=0.315 Sum_probs=176.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCCCH-
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEMEP- 150 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~~~- 150 (325)
.++|+++||+++|+. +.+|+|+||+|++||+++|+|+||||||||+++|+|+....| ++|+|.++|+++...+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 3 KKIITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred cceEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 458999999999974 579999999999999999999999999999999999732224 58999999998853211
Q ss_pred HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCCChH
Q 020477 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGFSGG 227 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~LSgG 227 (325)
....+..+++++|++.+++ .++.+++...... .+.. ........+.+.++.+++. .+..++.+. +||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~-~LS~G 152 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRL----AGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHESAL-SLSGG 152 (252)
T ss_pred HHHhcCeEEEEECCCccCC-CcHHHHHHHHHHH----cCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcCcc-cCCHH
Confidence 1122346899999998887 5888887654321 1111 1111223455667777652 123455665 49999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||+||||++++..+ +|++++|++|++++.|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~-~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRI-SDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHh-CCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 47999999999998877 69999999999999987
Q ss_pred cc
Q 020477 308 AS 309 (325)
Q Consensus 308 ~~ 309 (325)
+.
T Consensus 231 ~~ 232 (252)
T PRK14255 231 TK 232 (252)
T ss_pred HH
Confidence 64
No 215
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=340.00 Aligned_cols=221 Identities=26% Similarity=0.345 Sum_probs=176.0
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCCC
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLEM 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~~ 148 (325)
..++|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|+++...
T Consensus 21 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 21 KKVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM--VELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred CceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--ccCCCCCCCceeEEECCEEcccc
Confidence 4568999999999964 5799999999999999999999999999999999997 33 6999999999987532
Q ss_pred --CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCC
Q 020477 149 --EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEG 223 (325)
Q Consensus 149 --~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~ 223 (325)
..... ...++|+||++.+++. ++.+++...... .... ........+.+.++.+++. .+.+++.+. .
T Consensus 97 ~~~~~~~-~~~i~~v~q~~~~~~~-tv~eni~~~~~~----~~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~ 167 (271)
T PRK14238 97 SYSVEEL-RTNVGMVFQKPNPFPK-SIYDNVTYGPKI----HGIK--DKKTLDEIVEKSLRGAAIWDELKDRLHDNAY-G 167 (271)
T ss_pred cccHHHH-hhhEEEEecCCccccc-cHHHHHHHHHHh----cCCC--cHHHHHHHHHHHHHHcCCcchHHHHHhcCcc-c
Confidence 22222 2458899999988764 888887654311 1110 1112223345556665431 123455665 4
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ ||++++|++|+++
T Consensus 168 LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~-~d~i~~l~~G~i~ 245 (271)
T PRK14238 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARI-SDKTAFFLNGYVN 245 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHh-CCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 68999999999998877 6999999999999
Q ss_pred EEcCcc
Q 020477 304 KTGDAS 309 (325)
Q Consensus 304 ~~g~~~ 309 (325)
+.|+++
T Consensus 246 ~~g~~~ 251 (271)
T PRK14238 246 EYDDTD 251 (271)
T ss_pred EeCCHH
Confidence 998765
No 216
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.1e-46 Score=336.20 Aligned_cols=201 Identities=26% Similarity=0.381 Sum_probs=164.6
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEec-cCCccCCC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSF-QSPVEIPG 170 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~-Q~~~~~~~ 170 (325)
+++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++..... . .+..++|++ |.+.+++.
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~~~~~~~-~-~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL--LQPTSGEVRVAGLVPWKRRK-K-FLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEccccch-h-hcccEEEEcCCccccCCC
Confidence 5799999999999999999999999999999999998 67999999999987643222 1 223578887 55667777
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCc
Q 020477 171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEP 250 (325)
+++.+++....... + ....+....+.++++.+++. +..++.+.. ||||||||++|||||+.+|++||||||
T Consensus 110 ~tv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 110 LPVIDSFYLLAAIY----D---LPPARFKKRLDELSELLDLE-ELLDTPVRQ-LSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CcHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHcCCh-hHhcCChhh-CCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 88888875532211 1 11223344566788888985 456777664 999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 251 DSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 251 tsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|+|||+.+++.+.++|++++++ +.|||++|||++++..+ +|++++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEAL-ARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHh-CCEEEEEeCCEEEecC
Confidence 9999999999999999998654 78999999999998887 6999999999998754
No 217
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-45 Score=333.37 Aligned_cols=214 Identities=22% Similarity=0.320 Sum_probs=171.9
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++.++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+....+ ..
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~-~~ 77 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF--YDVDSGRILIDGHDVRDYTLASLR-RQ 77 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--ccCCCCEEEECCEEhhhCCHHHHH-hh
Confidence 478999999974334799999999999999999999999999999999998 679999999999988655443332 35
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHH-----HHhHHHHHHhc--CCccccccccCCCCCChHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEF-----YAYLYPKLERL--SMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQ 230 (325)
+++++|++.+++ .++.+++..... .....+. ...+.+.++.+ ++. ...++.+. .|||||||
T Consensus 78 i~~~~q~~~~~~-~tv~enl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~-~LS~G~~q 145 (234)
T cd03251 78 IGLVSQDVFLFN-DTVAENIAYGRP---------GATREEVEEAARAANAHEFIMELPEGYD-TVIGERGV-KLSGGQRQ 145 (234)
T ss_pred EEEeCCCCeecc-ccHHHHhhccCC---------CCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCC-cCCHHHHH
Confidence 889999998776 588887654211 0011111 11234455555 443 33455555 59999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++.. ||++++|++|++++.|+++
T Consensus 146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~v~~l~~G~i~~~~~~~ 221 (234)
T cd03251 146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLSTIEN--ADRIVVLEDGKIVERGTHE 221 (234)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhh--CCEEEEecCCeEeeeCCHH
Confidence 99999999999999999999999999999999999999864 7899999999999864 6999999999999988764
No 218
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.8e-46 Score=371.82 Aligned_cols=225 Identities=25% Similarity=0.373 Sum_probs=182.2
Q ss_pred CCcEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCCC
Q 020477 75 QPLLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLLE 147 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~~ 147 (325)
.++|+++|++++|+++ .+.+|+++||+|++||++||+||||||||||+|+|+|+ ++| ++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL--LPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCcCCccceEEEECCEeccc
Confidence 3589999999999631 25799999999999999999999999999999999998 444 79999999999876
Q ss_pred CCHHHH---hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccC
Q 020477 148 MEPEER---SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNV 220 (325)
Q Consensus 148 ~~~~~~---~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~ 220 (325)
.+...+ +...++++||++. +++..++.+++....... .+ ....+...++.++++.+++.. +..++.+
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH---RG---MRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 554321 2235899999975 445566666654322110 01 122334566788899999952 1356777
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 221 ~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
.+ |||||||||+|||||+.+|++|||||||++||+.+++.++++|++++++ |.|||+||||++++..+ ||+|++|++
T Consensus 155 ~~-LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~-~dri~~l~~ 232 (529)
T PRK15134 155 HQ-LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKL-ADRVAVMQN 232 (529)
T ss_pred cc-cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHh-cCEEEEEEC
Confidence 64 9999999999999999999999999999999999999999999998765 88999999999999887 699999999
Q ss_pred CEEEEEcCcc
Q 020477 300 GRIIKTGDAS 309 (325)
Q Consensus 300 G~iv~~g~~~ 309 (325)
|++++.|+++
T Consensus 233 G~i~~~g~~~ 242 (529)
T PRK15134 233 GRCVEQNRAA 242 (529)
T ss_pred CEEEEeCCHH
Confidence 9999988764
No 219
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.1e-46 Score=328.88 Aligned_cols=203 Identities=21% Similarity=0.274 Sum_probs=167.9
Q ss_pred EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---HHHhhc
Q 020477 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---EERSLA 156 (325)
Q Consensus 80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---~~~~~~ 156 (325)
++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++..... ....+.
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 76 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL--EKFDSGQVYLNGKETPPLNSKKASKFRRE 76 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccchhhHHHHHHh
Confidence 4799999963 5799999999999999999999999999999999998 67999999999998654332 222334
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.+++++|++.+++..++.+++...... .+ ....+....+.++++.+++. +..++.+.+ ||||||||++|||
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~~~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-lS~G~~qr~~lar 147 (206)
T TIGR03608 77 KLGYLFQNFALIENETVEENLDLGLKY----KK---LSKKEKREKKKEALEKVGLN-LKLKQKIYE-LSGGEQQRVALAR 147 (206)
T ss_pred CeeEEecchhhccCCcHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCch-hhhcCChhh-CCHHHHHHHHHHH
Confidence 688999999888888998887654221 11 11223345677889999995 566777764 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||++||+++++. . ||++++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-Q-ADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-h-cCEEEeC
Confidence 999999999999999999999999999999998766889999999998764 5 6998764
No 220
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=335.66 Aligned_cols=224 Identities=20% Similarity=0.303 Sum_probs=178.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCCCH-
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEMEP- 150 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~~~- 150 (325)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+....| ++|+|.++|+++...+.
T Consensus 4 ~~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 4 EIILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred cceEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 458999999999963 579999999999999999999999999999999999732223 58999999999865421
Q ss_pred HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020477 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG 227 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG 227 (325)
....+..++|++|++.+++. ++.+++.+.... .+.. ...+....+.++++.+++.. +..++.+. .||||
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS~G 153 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRI----HGEK--NKKTLDTIVEKSLKGAALWDEVKDRLHDSAL-SLSGG 153 (253)
T ss_pred hhhhhceEEEEecCCccCcc-cHHHHHHhhHHh----cCCC--CHHHHHHHHHHHHHHhcCchhhHHHhhcChh-hCCHH
Confidence 11223468999999988874 888887654321 1111 11222344666777777632 23455555 49999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ +|++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~-~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARV-SDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhh-CCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999999865 58999999999998876 69999999999999988
Q ss_pred ccH
Q 020477 308 ASI 310 (325)
Q Consensus 308 ~~~ 310 (325)
++.
T Consensus 232 ~~~ 234 (253)
T PRK14261 232 TTQ 234 (253)
T ss_pred HHH
Confidence 653
No 221
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.7e-45 Score=371.27 Aligned_cols=273 Identities=23% Similarity=0.310 Sum_probs=204.9
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCC-CCCCCCCcEEEEEEEEEECCCc-ccceeeeEEEEeCC
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDG-QDEKSQPLLQVTGLTAVIAESK-QEILKGVNLLVNEG 105 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~~-~~iL~~vsl~i~~G 105 (325)
+..|+..+......+.....+.+|+.++++.+++........ ...+....++++||+++|+..+ +.+|+|+||+|++|
T Consensus 287 ~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~G 366 (576)
T TIGR02204 287 VAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPG 366 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCC
Confidence 345666777777888889999999998876543321111111 1111234699999999997432 57999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR 185 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~ 185 (325)
|.++|+|+||||||||+|+|+|+ ++|++|+|.++|.++...+....+. .+++++|++.+|++ |..+|+..+
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl--~~p~~G~I~i~g~~i~~~~~~~~~~-~i~~~~Q~~~lf~~-Ti~~Ni~~~----- 437 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRF--YDPQSGRILLDGVDLRQLDPAELRA-RMALVPQDPVLFAA-SVMENIRYG----- 437 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--cCCCCCEEEECCEEHHhcCHHHHHH-hceEEccCCccccc-cHHHHHhcC-----
Confidence 99999999999999999999998 7899999999999998887766543 48899999998865 777776542
Q ss_pred hhcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHH
Q 020477 186 RKLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260 (325)
Q Consensus 186 ~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~ 260 (325)
.++.+.++.... +.+.++.+..+.+..-...+..||||||||++||||++++|++||||||||+||+.+++
T Consensus 438 ----~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~ 513 (576)
T TIGR02204 438 ----RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQ 513 (576)
T ss_pred ----CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHH
Confidence 122222222211 22233443211111111223459999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020477 261 DVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG 318 (325)
Q Consensus 261 ~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~ 318 (325)
.+++.|+++. +++|+|+|||+++.+.. +|+|++|++|++++.|+++ ++++..+
T Consensus 514 ~i~~~l~~~~-~~~t~IiitH~~~~~~~--~d~vi~l~~g~~~~~g~~~--~l~~~~~ 566 (576)
T TIGR02204 514 LVQQALETLM-KGRTTLIIAHRLATVLK--ADRIVVMDQGRIVAQGTHA--ELIAKGG 566 (576)
T ss_pred HHHHHHHHHh-CCCEEEEEecchHHHHh--CCEEEEEECCEEEeeecHH--HHHHcCC
Confidence 9999999985 46899999999988764 6999999999999999865 4455555
No 222
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=336.32 Aligned_cols=221 Identities=21% Similarity=0.292 Sum_probs=175.7
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-C--CCccEEEECCEeCCCCCHH-HH
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-E--VTEGSVVFKGENLLEMEPE-ER 153 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-~--p~~G~I~~~g~~i~~~~~~-~~ 153 (325)
-+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+..+ + |++|+|.++|+++...+.. ..
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 578999999963 6799999999999999999999999999999999998321 1 4799999999987543211 11
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGERK 230 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGqrQ 230 (325)
.+..++|+||++.+++. ++.+++...... .... ....+....+.++++.+++.. ...++.+. .|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~----~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPK-SIYDNVAYGPKL----HGLA-KNKKKLDEIVEKSLTSVGLWEELGDRLKDSAF-ELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccC-CHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHHHcCCCchhhhHhhcChh-hCCHHHHH
Confidence 23468899999988875 788877543211 1110 011223345667788998852 13455555 49999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~-~d~i~~l~~G~i~~~~~~~ 233 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQAKKV-SDRVAFFQSGRIVEYNTTQ 233 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhh-cCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999854 78999999999998877 6999999999999998764
No 223
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=338.56 Aligned_cols=224 Identities=22% Similarity=0.329 Sum_probs=178.7
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCCH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~~ 150 (325)
..++++++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+... .|++|+|.++|.++.....
T Consensus 22 ~~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 22 EQTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 3558999999999964 5799999999999999999999999999999999998321 1489999999998864211
Q ss_pred -HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020477 151 -EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG 226 (325)
Q Consensus 151 -~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg 226 (325)
....+..++|++|++.+++. ++.+++...... .+.. ........+.++++.+++.. +..++.+. +|||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~ 171 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRL----QGIN--NRRVLDEAVERSLRGAALWDEVKDRLHENAF-GLSG 171 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHh----cCCC--cHHHHHHHHHHHHHHcCCChhHHHHhhCCcc-cCCH
Confidence 11223468899999988875 888887554221 1110 11222344666778887742 23455555 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~-~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARV-SDYTAFMYMGKLVEYG 249 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhh-CCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999975 68999999999998876 6999999999999998
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+++
T Consensus 250 ~~~ 252 (272)
T PRK14236 250 DTD 252 (272)
T ss_pred CHH
Confidence 764
No 224
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-46 Score=378.69 Aligned_cols=226 Identities=23% Similarity=0.282 Sum_probs=185.7
Q ss_pred CCCcEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC-----
Q 020477 74 SQPLLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL----- 146 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~----- 146 (325)
..++|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+|+|+|+ ++|++|+|.++|.++.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl--l~p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL--LEQAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCCeEEEECCEEecccccc
Confidence 45689999999999632 24699999999999999999999999999999999998 6789999999997542
Q ss_pred -----CCCHHH---HhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--c
Q 020477 147 -----EMEPEE---RSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--D 214 (325)
Q Consensus 147 -----~~~~~~---~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~ 214 (325)
..+... .+...++|+||++ .+++.+++.+++....... .+ ....+...++.++++.+++.. +
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~~~~~l~~~gL~~~~~ 160 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH---QG---ASREEAMVEAKRMLDQVRIPEAQT 160 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHCCCCChhh
Confidence 112221 1223589999998 5777889999887653211 01 123344567788899999952 3
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcE
Q 020477 215 FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTF 293 (325)
Q Consensus 215 ~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~ 293 (325)
.+++.+.+ |||||||||+|||||+.+|+||||||||++||+.++++++++|+++.++ |+|||+||||++++..+ ||+
T Consensus 161 ~~~~~~~~-LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~-adr 238 (623)
T PRK10261 161 ILSRYPHQ-LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEI-ADR 238 (623)
T ss_pred HHhCCCcc-CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh-CCE
Confidence 46777765 9999999999999999999999999999999999999999999999755 89999999999999887 699
Q ss_pred EEEEeCCEEEEEcCcc
Q 020477 294 IHIMEDGRIIKTGDAS 309 (325)
Q Consensus 294 i~vl~~G~iv~~g~~~ 309 (325)
|++|++|++++.|+++
T Consensus 239 i~vl~~G~i~~~g~~~ 254 (623)
T PRK10261 239 VLVMYQGEAVETGSVE 254 (623)
T ss_pred EEEeeCCeecccCCHH
Confidence 9999999999988764
No 225
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-46 Score=369.22 Aligned_cols=220 Identities=23% Similarity=0.283 Sum_probs=183.4
Q ss_pred EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEE
Q 020477 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF 159 (325)
Q Consensus 80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 159 (325)
++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.....+..++
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 76 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI--YQKDSGSILFQGKEIDFKSSKEALENGIS 76 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 4689999963 5799999999999999999999999999999999998 67999999999999876554333334688
Q ss_pred EeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH
Q 020477 160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV 239 (325)
Q Consensus 160 ~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~ 239 (325)
+++|++.+++.+++.+++....... .+. .....+..+++.++++.+++. ...++.+.+ |||||||||+|||||+
T Consensus 77 ~v~q~~~~~~~~tv~~~l~~~~~~~---~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 77 MVHQELNLVLQRSVMDNMWLGRYPT---KGM-FVDQDKMYRDTKAIFDELDID-IDPRAKVAT-LSVSQMQMIEIAKAFS 150 (491)
T ss_pred EEecccccccCCCHHHHhhcccccc---ccc-ccCHHHHHHHHHHHHHHcCCC-CCccCchhh-CCHHHHHHHHHHHHHH
Confidence 9999998888889998876432100 000 011223345677889999986 456777764 9999999999999999
Q ss_pred hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
.+|++|||||||+|||+.+++++.++|++++++|.|||+||||++++..+ ||++++|++|++++.|+++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~-~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQL-CDEITILRDGQWIATQPLAG 220 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEeecChhh
Confidence 99999999999999999999999999999977789999999999999887 69999999999999987653
No 226
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=338.90 Aligned_cols=224 Identities=21% Similarity=0.312 Sum_probs=176.7
Q ss_pred CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCC
Q 020477 73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEME 149 (325)
Q Consensus 73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 149 (325)
+..++|+++||+++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+.... |++|+|.++|+++....
T Consensus 16 ~~~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CCCceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 45669999999999964 57999999999999999999999999999999999983212 26999999999875322
Q ss_pred HH-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCCC
Q 020477 150 PE-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGFS 225 (325)
Q Consensus 150 ~~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~LS 225 (325)
.. ...+.+++|+||++.+++. ++.+++....... ... ......+.+.++.+++. .+..++.+. .||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~----~~~----~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS 163 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN----GYK----GNLDELVEDSLRRAAIWEEVKDKLKEKGT-ALS 163 (274)
T ss_pred chhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc----Cch----HHHHHHHHHHHHHcccchhhHHHhcCCcc-cCC
Confidence 11 1223468999999987764 8888775532110 000 01122345556666652 123455555 499
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe-------
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME------- 298 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~------- 298 (325)
|||+|||+|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ ||++++|+
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~-~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRV-ADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-CCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999965 58999999999999887 69999997
Q ss_pred --CCEEEEEcCccH
Q 020477 299 --DGRIIKTGDASI 310 (325)
Q Consensus 299 --~G~iv~~g~~~~ 310 (325)
+|++++.|+++.
T Consensus 242 ~~~G~~~~~g~~~~ 255 (274)
T PRK14265 242 KRRGKLVEFSPTEQ 255 (274)
T ss_pred ccCceEEEeCCHHH
Confidence 899999998753
No 227
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-45 Score=326.77 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=169.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+++++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++.......+ .
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~v~~~g~~~~~~~~~~~--~ 74 (204)
T PRK13538 1 MLEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL--ARPDAGEVLWQGEPIRRQRDEYH--Q 74 (204)
T ss_pred CeEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEcccchHHhh--h
Confidence 5899999999964 5799999999999999999999999999999999998 67999999999998865432222 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.+++++|++.+++..++.+++...... .+. .....+.++++.+++. +..++.+. .||||||||++|||
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~----~~~------~~~~~~~~~l~~~gl~-~~~~~~~~-~LS~G~~qrl~la~ 142 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRL----HGP------GDDEALWEALAQVGLA-GFEDVPVR-QLSAGQQRRVALAR 142 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHh----cCc------cHHHHHHHHHHHcCCH-HHhhCChh-hcCHHHHHHHHHHH
Confidence 478889998888888999887654321 110 1124567789999995 45677766 49999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
||+++|++|||||||++||+.+++.+.++|+++++++.|||++|||++++... .+|++++
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~-~~~~~~~ 202 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD-KVRKLRL 202 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccC-CceEEec
Confidence 99999999999999999999999999999999876688999999999999874 6788766
No 228
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.3e-45 Score=332.83 Aligned_cols=198 Identities=23% Similarity=0.398 Sum_probs=166.7
Q ss_pred eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchH
Q 020477 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNI 174 (325)
Q Consensus 95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~ 174 (325)
|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.. .++++|++.+++.+++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~------~~~v~q~~~l~~~~tv~ 72 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL--AQPTSGGVILEGKQITEPGPD------RMVVFQNYSLLPWLTVR 72 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChh------heEEecCcccCCCCCHH
Confidence 5799999999999999999999999999999998 679999999999988654321 25789999888888999
Q ss_pred HHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCC
Q 020477 175 DFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL 254 (325)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgL 254 (325)
+++....... . ......+....+.+.++.+++. +..++.+.+ ||||||||++|||||+.+|++|||||||+||
T Consensus 73 e~l~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~la~al~~~p~lllLDEPt~gL 145 (230)
T TIGR01184 73 ENIALAVDRV---L--PDLSKSERRAIVEEHIALVGLT-EAADKRPGQ-LSGGMKQRVAIARALSIRPKVLLLDEPFGAL 145 (230)
T ss_pred HHHHHHHHhc---c--cCCCHHHHHHHHHHHHHHcCCH-HHHcCChhh-CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 9876643110 0 1112233345577889999996 566777764 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 255 DVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 255 D~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|+.+++.+.+.|+++.++ |.|||+||||++++..+ ||++++|++|++++.|+.
T Consensus 146 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~v~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 146 DALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLL-SDRVVMLTNGPAANIGQI 199 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEeCCcEecccCc
Confidence 999999999999998754 88999999999998887 699999999999988865
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-45 Score=370.64 Aligned_cols=226 Identities=23% Similarity=0.390 Sum_probs=185.1
Q ss_pred CCCcEEEEEEEEEECC---------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020477 74 SQPLLQVTGLTAVIAE---------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN 144 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~---------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~ 144 (325)
..++|+++||++.|+. +++.+|+++||+|++||+++|+||||||||||+|+|+|+ + |++|+|+++|++
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl--~-~~~G~i~~~g~~ 348 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL--I-NSQGEIWFDGQP 348 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc--C-CCCcEEEECCEE
Confidence 3568999999999952 135799999999999999999999999999999999997 4 489999999999
Q ss_pred CCCCCHHHH--hhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC
Q 020477 145 LLEMEPEER--SLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV 220 (325)
Q Consensus 145 i~~~~~~~~--~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 220 (325)
+...+...+ .+..++|+||++ .+++.+++.+++....... .. .....+...++.++++.+++..+..++.+
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~----~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 423 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH----QP-TLSAAQREQQVIAVMEEVGLDPETRHRYP 423 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhc----cc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC
Confidence 866543321 124588999997 3677789998876543211 00 01122334567788999999534567777
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 221 ~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
.+ |||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++ |.|||+||||++++..+ ||++++|++
T Consensus 424 ~~-LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~-~d~i~~l~~ 501 (529)
T PRK15134 424 AE-FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRAL-CHQVIVLRQ 501 (529)
T ss_pred cc-CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHh-cCeEEEEEC
Confidence 65 9999999999999999999999999999999999999999999999764 88999999999999887 699999999
Q ss_pred CEEEEEcCcc
Q 020477 300 GRIIKTGDAS 309 (325)
Q Consensus 300 G~iv~~g~~~ 309 (325)
|++++.|+++
T Consensus 502 G~i~~~~~~~ 511 (529)
T PRK15134 502 GEVVEQGDCE 511 (529)
T ss_pred CEEEEEcCHH
Confidence 9999998764
No 230
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=9.2e-46 Score=335.03 Aligned_cols=214 Identities=19% Similarity=0.338 Sum_probs=169.1
Q ss_pred EEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 78 LQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 78 l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
++++|+++.|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+....+ .
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~ 77 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF--YDPTSGEILLDGVDIRDLNLRWLR-S 77 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc--CCCCCCEEEECCEehhhcCHHHHH-h
Confidence 4789999999642 24699999999999999999999999999999999998 679999999999987655443332 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHHHhc--CCccccccccCCCCCChHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKLERL--SMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LSgGqr 229 (325)
.++|++|++.+++ .++.+++..... . ....+... .+.+.++.+ ++. ...++.+. +||||||
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~-~LS~G~~ 145 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKP-------D--ATDEEVEEAAKKANIHDFIMSLPDGYD-TLVGERGS-QLSGGQK 145 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCC-------C--CCHHHHHHHHHHcChHHHHHhhccccc-eeeccCCc-cCCHHHH
Confidence 5889999987765 577777643211 0 00111111 122333333 332 23445554 5999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+|||||+.+|++|||||||+|||+.+++.+.+.|+++. +|.|||++|||++++. . ||++++|++|++++.|+.+
T Consensus 146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~-~d~v~~l~~G~i~~~~~~~ 222 (238)
T cd03249 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-N-ADLIAVLQNGQVVEQGTHD 222 (238)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-h-CCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999987 6889999999999986 5 7999999999999988754
No 231
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=8.4e-46 Score=353.57 Aligned_cols=222 Identities=27% Similarity=0.392 Sum_probs=198.5
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.+.+++++++|+|+ +..++++|||+|++||+.||+|+||||||||+++|.|+ |+|++|+|.|+|+++.-.++.+..
T Consensus 2 ~~~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~--~~P~~GeI~v~G~~v~~~sP~dA~ 77 (501)
T COG3845 2 EPALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL--YQPDSGEIRVDGKEVRIKSPRDAI 77 (501)
T ss_pred CceEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc--ccCCcceEEECCEEeccCCHHHHH
Confidence 45799999999998 37899999999999999999999999999999999998 899999999999999888888877
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+.||+||+|++.+++.+|+.||+..+.... ........+..+++.++.+++|+.-+ .+..+.. ||-||||||.|
T Consensus 78 ~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~----~~~~~~~~~~~~~i~~l~~~yGl~vd-p~~~V~d-LsVG~qQRVEI 151 (501)
T COG3845 78 RLGIGMVHQHFMLVPTLTVAENIILGLEPS----KGGLIDRRQARARIKELSERYGLPVD-PDAKVAD-LSVGEQQRVEI 151 (501)
T ss_pred HcCCcEEeeccccccccchhhhhhhcCccc----cccccCHHHHHHHHHHHHHHhCCCCC-ccceeec-CCcchhHHHHH
Confidence 789999999999999999999998765321 11123455667788899999999643 5667765 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
-+||+++|++|||||||+-|-|...+++++.|++++++|+|||+|||-++++..+ |||+-||++|+++...+
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~i-aDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAI-ADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh-hCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999999999999999999999998 69999999999987655
No 232
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.4e-45 Score=335.69 Aligned_cols=214 Identities=24% Similarity=0.320 Sum_probs=172.9
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC----CccEEEECCEeCCCCCHHH
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV----TEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p----~~G~I~~~g~~i~~~~~~~ 152 (325)
+|+++||+++| + +.+|+|+||+|++||+++|+|+||||||||+++|+|+ .+| ++|+|.++|+++... .
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~~~~~G~i~~~g~~i~~~---~ 75 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI--LPAGVRQTAGRVLLDGKPVAPC---A 75 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCCcCCEEEECCeecccc---c
Confidence 79999999999 2 4799999999999999999999999999999999998 567 999999999987532 1
Q ss_pred HhhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccc--cccccCCCCCChHH
Q 020477 153 RSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD--FLNRNVNEGFSGGE 228 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~LSgGq 228 (325)
.....++|++|++. +.+..++.+++...... .+.. . ....+.+.++.+++... .+++.+. .|||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~----~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~~~-~LS~Gq 145 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLA----LGKP---A--DDATLTAALEAVGLENAARVLKLYPF-EMSGGM 145 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHH----cCCC---h--HHHHHHHHHHHcCCCChhhhhhcCCc-ccCHHH
Confidence 22245889999974 33345555554322111 1111 1 12456778899998531 3566665 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
+|||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++||+++.+..+ ||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~-~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARL-ADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh-CCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999998654 78999999999998877 69999999999999987
Q ss_pred cc
Q 020477 308 AS 309 (325)
Q Consensus 308 ~~ 309 (325)
++
T Consensus 225 ~~ 226 (254)
T PRK10418 225 VE 226 (254)
T ss_pred HH
Confidence 65
No 233
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-45 Score=334.91 Aligned_cols=224 Identities=23% Similarity=0.348 Sum_probs=178.1
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-C--CccEEEECCEeCCCCCHH
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-V--TEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-p--~~G~I~~~g~~i~~~~~~ 151 (325)
.++|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+|+|+|+.... | ++|+|.++|+++...+..
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 5 IPAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred cceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 347999999999963 57999999999999999999999999999999999983211 2 589999999987532111
Q ss_pred -HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020477 152 -ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG 227 (325)
Q Consensus 152 -~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG 227 (325)
...+..+++++|++.+++ .++.+++....... .. ....+....+.+.++.+++.. +.+++.+. .||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~----~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS~G 154 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFP-MSIYENVAYGVRIS----AK--LPQADLDEIVESALKGAALWQEVKDKLNKSAL-GLSGG 154 (259)
T ss_pred hHhhhhheEEEecccccCC-ccHHHHHHHHHHHh----cC--CCHHHHHHHHHHHHHHcCCcchhhhHhcCCcc-cCCHH
Confidence 122346899999998887 78888876543211 10 111222344566778887731 34556655 49999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe-----CCEE
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME-----DGRI 302 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~-----~G~i 302 (325)
|+|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++..+ ||++++|+ +|++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~-~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRV-SDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-cCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999999865 58999999999999887 69999997 5999
Q ss_pred EEEcCccH
Q 020477 303 IKTGDASI 310 (325)
Q Consensus 303 v~~g~~~~ 310 (325)
++.|+++.
T Consensus 233 ~~~~~~~~ 240 (259)
T PRK14260 233 VEFGVTTQ 240 (259)
T ss_pred EEeCCHHH
Confidence 99998764
No 234
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-46 Score=315.74 Aligned_cols=229 Identities=23% Similarity=0.326 Sum_probs=193.3
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
+++.+++++.+|++....+|+|+|++|.+||.++++||||||||||+++++|+ .+|..|+|.++|+++..-..+
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf--~~P~~G~i~l~~r~i~gPgae---- 75 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF--VTPSRGSIQLNGRRIEGPGAE---- 75 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC--cCcccceEEECCEeccCCCcc----
Confidence 46889999999986545599999999999999999999999999999999998 789999999999998763321
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
-+.|||++.++|.+++.+|+.++...+ .+.+.+..+.+.+.+..+|+. ++.++.+.+ |||||||||.||
T Consensus 76 --rgvVFQ~~~LlPWl~~~dNvafgL~l~-------Gi~k~~R~~~a~q~l~~VgL~-~~~~~~i~q-LSGGmrQRvGiA 144 (259)
T COG4525 76 --RGVVFQNEALLPWLNVIDNVAFGLQLR-------GIEKAQRREIAHQMLALVGLE-GAEHKYIWQ-LSGGMRQRVGIA 144 (259)
T ss_pred --ceeEeccCccchhhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHhCcc-cccccceEe-ecchHHHHHHHH
Confidence 246799999999999999998876543 233455667788889999996 566777765 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEe--CCEEEEEcCccHHH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIME--DGRIIKTGDASIAT 312 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~--~G~iv~~g~~~~~~ 312 (325)
|||+.+|++|+||||+++||.-+++++.++|-++- ..|+.+++||||++++-.+ +++++||. .|+|++.-+++...
T Consensus 145 RALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl-atrLvvlsp~pgRvv~~~~~df~r 223 (259)
T COG4525 145 RALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFL-ATRLVVLSPGPGRVVERLPLDFAR 223 (259)
T ss_pred HHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh-hheeEEecCCCceeeEecCCCHHH
Confidence 99999999999999999999999999999998865 4589999999999999877 79999996 58999988877554
Q ss_pred HHHhCC-eecc
Q 020477 313 VLEEGG-YKAI 322 (325)
Q Consensus 313 ~~~~~~-~~~~ 322 (325)
-+..++ .++|
T Consensus 224 R~aage~~RaI 234 (259)
T COG4525 224 RYAAGEPSRAI 234 (259)
T ss_pred HhhcCCCcchh
Confidence 444433 3444
No 235
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-45 Score=339.07 Aligned_cols=220 Identities=22% Similarity=0.280 Sum_probs=172.9
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++.. .....
T Consensus 6 ~l~~~~l~~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~----~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF--VRLASGKISILGQPTRQ----ALQKN 78 (272)
T ss_pred eEEEEeEEEEecC-CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEhHH----hhccc
Confidence 6999999999963 36799999999999999999999999999999999998 67999999999998642 12223
Q ss_pred cEEEeccCCccCC--CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 157 GLFMSFQSPVEIP--GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 157 ~i~~~~Q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
.++|++|++.+.. ..++.+++...... ..+............+.++++.+++. +..++.+.+ ||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LSgG~~qrv~l 153 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYG---HMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGE-LSGGQKKRVFL 153 (272)
T ss_pred eEEEeccccccccCCCcchhhheeccccc---ccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCccc-CCHHHHHHHHH
Confidence 5889999975421 12344443221100 00000001122234566788999996 556777765 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||+|||+.+++.+.++|++++++|.|||++|||++++..+ ||+++++ +|++++.|+++.
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~-~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF-CDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEE-CCEEEeecCHHh
Confidence 9999999999999999999999999999999999976788999999999998887 6898766 899999987653
No 236
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-45 Score=318.61 Aligned_cols=173 Identities=26% Similarity=0.410 Sum_probs=151.4
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++ +++|+++||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+ ... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~-~~~-~~~ 74 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL--LKPDSGEIKVLGKDIKKEP-EEV-KRR 74 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcccch-Hhh-hcc
Confidence 478999999964 4799999999999999999999999999999999998 6789999999999886543 222 246
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++|++.+++..++.+++. |||||+||++||||
T Consensus 75 i~~~~q~~~~~~~~tv~~~~~---------------------------------------------LS~G~~qrv~lara 109 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENLK---------------------------------------------LSGGMKQRLALAQA 109 (173)
T ss_pred EEEEecCCccccCCcHHHHhh---------------------------------------------cCHHHHHHHHHHHH
Confidence 899999987766555443310 89999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
|+.+|++|||||||++||+.+++.+.+.|+++.++|.|+|++|||++++..+ +|++++|++|++
T Consensus 110 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~-~d~i~~l~~g~i 173 (173)
T cd03230 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL-CDRVAILNNGRI 173 (173)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-CCEEEEEeCCCC
Confidence 9999999999999999999999999999999976688999999999988876 699999999874
No 237
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-45 Score=344.21 Aligned_cols=226 Identities=22% Similarity=0.295 Sum_probs=179.1
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCCH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~~ 150 (325)
...+|+++|++++|.++.+.+|+|+||+|++||++||+|+||||||||+++|+|+... .|++|+|.++|+++...+.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3468999999999964445799999999999999999999999999999999998321 2679999999999863221
Q ss_pred H-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHH-HHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020477 151 E-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE-FYAYLYPKLERLSMKT---DFLNRNVNEGFS 225 (325)
Q Consensus 151 ~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~---~~~~~~~~~~LS 225 (325)
. ...+..++++||+|.+|. .++.+|+.+.... .+ ....+ ..+.+.+.++.+++.. ...++... +||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~----~~---~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~-~LS 227 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRN----NG---INDRKILEKIVEKSLKSAALWDEVKDDLDKAGN-ALS 227 (329)
T ss_pred chHhhhccEEEEecCCccCC-CcHHHHHHhHHHh----cC---CChHHHHHHHHHHHHHHcCCcchhhhhhhCCcc-cCC
Confidence 1 122346899999998875 6888888643211 01 11122 1233456677777631 22344444 599
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
|||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+..+ ||+|++|++|++++.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~-~Driivl~~G~i~e~ 305 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRI-SDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 58999999999999887 699999999999999
Q ss_pred cCccH
Q 020477 306 GDASI 310 (325)
Q Consensus 306 g~~~~ 310 (325)
|+++.
T Consensus 306 g~~~~ 310 (329)
T PRK14257 306 GETKT 310 (329)
T ss_pred CCHHH
Confidence 98764
No 238
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.5e-45 Score=318.48 Aligned_cols=173 Identities=28% Similarity=0.440 Sum_probs=149.8
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++..+.+++++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+...++ ..
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~~ 77 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL--LRPTSGRVRLDGADISQWDPNELG-DH 77 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCeEEECCEEcccCCHHHHH-hh
Confidence 478999999974335699999999999999999999999999999999998 679999999999998776554433 35
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++. ++.+++ |||||+||++||||
T Consensus 78 i~~~~q~~~~~~~-tv~~~l----------------------------------------------LS~G~~qrv~la~a 110 (173)
T cd03246 78 VGYLPQDDELFSG-SIAENI----------------------------------------------LSGGQRQRLGLARA 110 (173)
T ss_pred eEEECCCCccccC-cHHHHC----------------------------------------------cCHHHHHHHHHHHH
Confidence 8899999865542 332210 89999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
|+.+|++|||||||++||+.+++.+++.|++++++|.|||++|||++++. . ||++++|++|++
T Consensus 111 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l~~G~i 173 (173)
T cd03246 111 LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVLEDGRV 173 (173)
T ss_pred HhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEEECCCC
Confidence 99999999999999999999999999999999767889999999999884 5 799999999874
No 239
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-45 Score=336.37 Aligned_cols=221 Identities=21% Similarity=0.306 Sum_probs=174.5
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-C--CCccEEEECCEeCCC--CC
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-E--VTEGSVVFKGENLLE--ME 149 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-~--p~~G~I~~~g~~i~~--~~ 149 (325)
.++|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+... + |++|+|.++|+++.. ..
T Consensus 8 ~~~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 8 ETVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred ceEEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 458999999999964 5799999999999999999999999999999999997321 1 479999999998743 22
Q ss_pred HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020477 150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG 226 (325)
Q Consensus 150 ~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg 226 (325)
.... +..+++++|++.+++ .++.+++....... +.. .+..+.+.++++.+++.. +..++.+. +|||
T Consensus 86 ~~~~-~~~i~~v~q~~~~~~-~tv~enl~~~~~~~----~~~----~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LSg 154 (264)
T PRK14243 86 PVEV-RRRIGMVFQKPNPFP-KSIYDNIAYGARIN----GYK----GDMDELVERSLRQAALWDEVKDKLKQSGL-SLSG 154 (264)
T ss_pred hHHH-hhhEEEEccCCcccc-ccHHHHHHhhhhhc----Ccc----hHHHHHHHHHHHHhCchhhHHHHhcCCcc-cCCH
Confidence 2222 235889999998777 48888875542110 110 111233445566666531 23455555 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe--------
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME-------- 298 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~-------- 298 (325)
||+||++|||||+.+|++|||||||+|||+.+++.+.++|.++.+ +.|||++|||++++..+ ||++++|+
T Consensus 155 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~-~d~v~~l~~~~~~~~~ 232 (264)
T PRK14243 155 GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARV-SDMTAFFNVELTEGGG 232 (264)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHh-CCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999975 47999999999999887 69999998
Q ss_pred -CCEEEEEcCccH
Q 020477 299 -DGRIIKTGDASI 310 (325)
Q Consensus 299 -~G~iv~~g~~~~ 310 (325)
+|++++.|+++.
T Consensus 233 ~~g~i~~~~~~~~ 245 (264)
T PRK14243 233 RYGYLVEFDRTEK 245 (264)
T ss_pred cCceEEEeCCHHH
Confidence 799999997653
No 240
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.7e-45 Score=320.56 Aligned_cols=178 Identities=23% Similarity=0.361 Sum_probs=153.6
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++++++|++++| +|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+.....
T Consensus 2 ~~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~ 73 (182)
T cd03215 2 EPVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL--RPPASGEITLDGKPVTRRSPRDAI 73 (182)
T ss_pred CcEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCccCHHHHH
Confidence 3479999999988 89999999999999999999999999999999998 679999999999998776543333
Q ss_pred hccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 155 LAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 155 ~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
+..++|++|++ .+++..++.+++.... .||||||||
T Consensus 74 ~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-----------------------------------------~LS~G~~qr 112 (182)
T cd03215 74 RAGIAYVPEDRKREGLVLDLSVAENIALSS-----------------------------------------LLSGGNQQK 112 (182)
T ss_pred hCCeEEecCCcccCcccCCCcHHHHHHHHh-----------------------------------------hcCHHHHHH
Confidence 44688999985 3555556555432110 099999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+++.|+|++|||++++..+ ||++++|++|++
T Consensus 113 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~v~~l~~G~i 182 (182)
T cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGL-CDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEecCCcC
Confidence 9999999999999999999999999999999999999876688999999999999887 699999999974
No 241
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-45 Score=333.62 Aligned_cols=222 Identities=21% Similarity=0.380 Sum_probs=180.7
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC------EeCCC
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG------ENLLE 147 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g------~~i~~ 147 (325)
..|+++++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ +.|++|+|.++| .++..
T Consensus 7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~--~~~~~G~v~~~G~~~~~g~~~~~ 82 (257)
T PRK14246 7 AEDVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL--IEIYDSKIKVDGKVLYFGKDIFQ 82 (257)
T ss_pred hhhheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCcCceeEcCEEEECCccccc
Confidence 4678999999999964 6799999999999999999999999999999999998 678887766665 44443
Q ss_pred CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCC
Q 020477 148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGF 224 (325)
Q Consensus 148 ~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~L 224 (325)
.+.... +..++|++|++.+++..++.+++...... .+. ....+....+.++++.+++.. +..++.+. .|
T Consensus 83 ~~~~~~-~~~i~~~~q~~~~~~~~tv~~nl~~~~~~----~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~L 154 (257)
T PRK14246 83 IDAIKL-RKEVGMVFQQPNPFPHLSIYDNIAYPLKS----HGI--KEKREIKKIVEECLRKVGLWKEVYDRLNSPAS-QL 154 (257)
T ss_pred CCHHHH-hcceEEEccCCccCCCCcHHHHHHHHHHh----cCC--CCHHHHHHHHHHHHHHcCCCccchhhhcCCcc-cC
Confidence 333322 24588999999988888998887654221 111 112233456777888888842 34556665 49
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
|||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.+ +.|||++||+++++..+ ||++++|++|++++
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~-~d~v~~l~~g~i~~ 232 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARV-ADYVAFLYNGELVE 232 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHh-CCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 58999999999998877 69999999999999
Q ss_pred EcCcc
Q 020477 305 TGDAS 309 (325)
Q Consensus 305 ~g~~~ 309 (325)
.|+.+
T Consensus 233 ~g~~~ 237 (257)
T PRK14246 233 WGSSN 237 (257)
T ss_pred ECCHH
Confidence 99765
No 242
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-45 Score=326.94 Aligned_cols=205 Identities=23% Similarity=0.303 Sum_probs=171.8
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++... .+
T Consensus 8 ~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~i~~~---~~ 80 (214)
T PRK13543 8 APPLLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL--LHVESGQIQIDGKTATRG---DR 80 (214)
T ss_pred CcceEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCCeeEEECCEEccch---hh
Confidence 3468999999999964 5799999999999999999999999999999999998 789999999999987542 11
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
...++|++|++.+++.+++.+++...... .+. . ....+.+.++.+++. +..++.+.. ||||||||++
T Consensus 81 -~~~i~~~~q~~~~~~~~t~~e~l~~~~~~----~~~---~---~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~ 147 (214)
T PRK13543 81 -SRFMAYLGHLPGLKADLSTLENLHFLCGL----HGR---R---AKQMPGSALAIVGLA-GYEDTLVRQ-LSAGQKKRLA 147 (214)
T ss_pred -hhceEEeecCcccccCCcHHHHHHHHHHh----cCC---c---HHHHHHHHHHHcCCh-hhccCChhh-CCHHHHHHHH
Confidence 23578899998888888888887654211 011 1 123456678889986 456777764 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
||||++.+|++|||||||++||+.+++.+.+.|+++.++|.|||++|||++++..+ ++++++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~~~i~~l~~ 212 (214)
T PRK13543 148 LARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPV-RTRMLTLEA 212 (214)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhh-cceEEEEee
Confidence 99999999999999999999999999999999999877788999999999999887 699988763
No 243
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.2e-45 Score=399.13 Aligned_cols=273 Identities=16% Similarity=0.263 Sum_probs=208.5
Q ss_pred chHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCC----CCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCC
Q 020477 31 PALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQ----DEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEG 105 (325)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~G 105 (325)
++..+..+...++.+..+.+|+.++++.++.......... .......|+++||+|+|++. ++++|+|+||+|++|
T Consensus 1115 ~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G 1194 (1466)
T PTZ00265 1115 YAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSK 1194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCC
Confidence 4556666777888999999999998875432211111111 01122469999999999742 357999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCCCCC----------------------------------------------------
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEV---------------------------------------------------- 133 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p---------------------------------------------------- 133 (325)
+++|||||||||||||+++|+|+ |+|
T Consensus 1195 ~~vAIVG~SGsGKSTl~~LL~r~--ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265 1195 KTTAIVGETGSGKSTVMSLLMRF--YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh--CCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999998 666
Q ss_pred --CccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHH
Q 020477 134 --TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKL 206 (325)
Q Consensus 134 --~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l 206 (325)
++|+|++||.++..++...++. .+++|+|+|.+|. .|..+|+.++ .++.+.++..+ .+.+.+
T Consensus 1273 ~~~~G~I~idG~di~~~~~~~lR~-~i~~V~Qep~LF~-gTIreNI~~g---------~~~at~eeI~~A~k~A~l~~fI 1341 (1466)
T PTZ00265 1273 FKNSGKILLDGVDICDYNLKDLRN-LFSIVSQEPMLFN-MSIYENIKFG---------KEDATREDVKRACKFAAIDEFI 1341 (1466)
T ss_pred CCCCCeEEECCEEHHhCCHHHHHh-hccEeCCCCcccc-ccHHHHHhcC---------CCCCCHHHHHHHHHHcCCHHHH
Confidence 6999999999999998776554 4889999999986 5888887654 22333333322 233445
Q ss_pred HhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhH
Q 020477 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRL 285 (325)
Q Consensus 207 ~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~ 285 (325)
..+..+.+..-..-+..||||||||++|||||+++|+|||||||||+||.++++.|.+.|.++. .+++|+|+|||++..
T Consensus 1342 ~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst 1421 (1466)
T PTZ00265 1342 ESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS 1421 (1466)
T ss_pred HhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH
Confidence 5554332222223344699999999999999999999999999999999999999999999985 357899999999988
Q ss_pred HhhhCCcEEEEEeC----CEEE-EEcCccHHHHHH-hCCee
Q 020477 286 LEFIKPTFIHIMED----GRII-KTGDASIATVLE-EGGYK 320 (325)
Q Consensus 286 ~~~~~~d~i~vl~~----G~iv-~~g~~~~~~~~~-~~~~~ 320 (325)
+.. ||+|++|++ |+++ +.|+. .++++ .+|.|
T Consensus 1422 i~~--aD~Ivvl~~~~~~G~iv~e~Gth--~eLl~~~~g~Y 1458 (1466)
T PTZ00265 1422 IKR--SDKIVVFNNPDRTGSFVQAHGTH--EELLSVQDGVY 1458 (1466)
T ss_pred HHh--CCEEEEEeCCCCCCCEEEEecCH--HHHHhcCCChH
Confidence 765 699999999 9955 78965 46776 46654
No 244
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-45 Score=328.21 Aligned_cols=214 Identities=22% Similarity=0.364 Sum_probs=168.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
.|+++|++++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++...+.... +.
T Consensus 2 ~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~-~~ 77 (229)
T cd03254 2 EIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF--YDPQKGQILIDGIDIRDISRKSL-RS 77 (229)
T ss_pred eEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCEeHHHcCHHHH-hh
Confidence 4789999999963 24699999999999999999999999999999999998 67899999999998865544332 24
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH-----HhHHHHHHhc--CCccccccccCCCCCChHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERL--SMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqr 229 (325)
.++|++|++.+++. ++.+++..... .....+.. ..+.+.++.+ ++. ...++.+. .||||||
T Consensus 78 ~i~~~~q~~~~~~~-tv~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~-~LS~G~~ 145 (229)
T cd03254 78 MIGVVLQDTFLFSG-TIMENIRLGRP---------NATDEEVIEAAKEAGAHDFIMKLPNGYD-TVLGENGG-NLSQGER 145 (229)
T ss_pred hEEEecCCchhhhh-HHHHHHhccCC---------CCCHHHHHHHHHHhChHHHHHhCccccc-CHhhcCCC-cCCHHHH
Confidence 58899999877764 77776643210 00111111 1223334443 332 23344454 5999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+|||||+.+|++|||||||+|||+.+++.+++.|+++. ++.|||++||+++++. . ||++++|++|++++.|+.+
T Consensus 146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~-~d~i~~l~~g~~~~~~~~~ 222 (229)
T cd03254 146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-N-ADKILVLDDGKIIEEGTHD 222 (229)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-h-CCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999986 4789999999999885 4 6999999999999888653
No 245
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-45 Score=333.78 Aligned_cols=222 Identities=23% Similarity=0.329 Sum_probs=178.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-----ccEEEECCEeCCCC-
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-----EGSVVFKGENLLEM- 148 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-----~G~I~~~g~~i~~~- 148 (325)
-++|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|+ +|+|.++|+++...
T Consensus 5 ~~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 5 IPAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM--NELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred cceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc--cCCCCCccccceEEECCEEhhccc
Confidence 347999999999964 4699999999999999999999999999999999998 4564 89999999987422
Q ss_pred -CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCC
Q 020477 149 -EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGF 224 (325)
Q Consensus 149 -~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~L 224 (325)
+.... +..+++++|++.+++ .++.+++...... .+. ....+....+.++++.+++.. +..++.+. .|
T Consensus 81 ~~~~~~-~~~i~~~~q~~~l~~-~tv~enl~~~~~~----~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~L 151 (261)
T PRK14258 81 VNLNRL-RRQVSMVHPKPNLFP-MSVYDNVAYGVKI----VGW--RPKLEIDDIVESALKDADLWDEIKHKIHKSAL-DL 151 (261)
T ss_pred cchHHh-hccEEEEecCCccCc-ccHHHHHHHHHHh----cCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcCCcc-cC
Confidence 21222 345889999988877 7888887554211 111 011222345667788888731 23455555 59
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeC----
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMED---- 299 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~---- 299 (325)
||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ ++.|||+||||++++..+ ||+|++|++
T Consensus 152 SgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~-~d~i~~l~~~~~~ 230 (261)
T PRK14258 152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL-SDFTAFFKGNENR 230 (261)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh-cCEEEEEccCCCc
Confidence 99999999999999999999999999999999999999999999864 488999999999999887 699999999
Q ss_pred -CEEEEEcCccH
Q 020477 300 -GRIIKTGDASI 310 (325)
Q Consensus 300 -G~iv~~g~~~~ 310 (325)
|++++.|+++.
T Consensus 231 ~G~i~~~~~~~~ 242 (261)
T PRK14258 231 IGQLVEFGLTKK 242 (261)
T ss_pred CceEEEeCCHHH
Confidence 99999998764
No 246
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-45 Score=365.78 Aligned_cols=229 Identities=18% Similarity=0.248 Sum_probs=184.5
Q ss_pred CCcEEEEEEEEEECC-CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-CccEEEECCEeCCCCCHHH
Q 020477 75 QPLLQVTGLTAVIAE-SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-TEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~-~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-~~G~I~~~g~~i~~~~~~~ 152 (325)
.++|+++|++++|+. +++.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+| ++|+|.++|+++.......
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA--YPGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC--CCCCCCeEEEECCEECCCCCHHH
Confidence 458999999999942 135699999999999999999999999999999999998 564 8999999999886544322
Q ss_pred HhhccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 153 RSLAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 153 ~~~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
..+..+++++|++ .+++.+++.+++........ .........+....+.++++.+++.....++.+.. ||||||
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGqk 409 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF--CFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR-LSGGNQ 409 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhh--ccCCcCCHHHHHHHHHHHHHhcCccCCCccCcccc-CCHHHH
Confidence 2234688999996 47788888888765321100 00001112223355778899999953346777765 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||+||||++++..+ ||++++|++|+++..++.+
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGL-SDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999987789999999999999887 6999999999999877543
No 247
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.7e-45 Score=328.27 Aligned_cols=209 Identities=20% Similarity=0.293 Sum_probs=167.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
.++++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+...++ .
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~ 78 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL--VELSSGSILIDGVDISKIGLHDLR-S 78 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCCEEEECCEEhHhCCHHHHh-h
Confidence 3789999999975445799999999999999999999999999999999998 679999999999988765544433 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc----------ccccccCCCCCCh
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT----------DFLNRNVNEGFSG 226 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 226 (325)
.++|++|++.+++ .++.+++.... .... ..+.+.++.+++.. ...++.+. .|||
T Consensus 79 ~i~~~~q~~~l~~-~tv~enl~~~~----------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~-~LS~ 142 (221)
T cd03244 79 RISIIPQDPVLFS-GTIRSNLDPFG----------EYSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGE-NLSV 142 (221)
T ss_pred hEEEECCCCcccc-chHHHHhCcCC----------CCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCC-cCCH
Confidence 5889999998765 47777653210 0111 12233344444321 11234444 5999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++.. ||++++|++|++++.|
T Consensus 143 G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 143 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID--SDRILVLDKGRVVEFD 219 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh--CCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999999865 5899999999998864 6999999999999877
Q ss_pred C
Q 020477 307 D 307 (325)
Q Consensus 307 ~ 307 (325)
+
T Consensus 220 ~ 220 (221)
T cd03244 220 S 220 (221)
T ss_pred C
Confidence 5
No 248
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.1e-45 Score=327.90 Aligned_cols=210 Identities=26% Similarity=0.322 Sum_probs=169.1
Q ss_pred cEEEEEEEEEECC----C-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC--CE--eCCC
Q 020477 77 LLQVTGLTAVIAE----S-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK--GE--NLLE 147 (325)
Q Consensus 77 ~l~~~~ls~~y~~----~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~--g~--~i~~ 147 (325)
||+++||+++|+. + .+.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++ |+ ++..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN--YLPDSGRILVRHEGAWVDLAQ 78 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEEecCCCccchhh
Confidence 5899999999963 1 24699999999999999999999999999999999998 67999999998 43 4444
Q ss_pred CCHHH---HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020477 148 MEPEE---RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF 224 (325)
Q Consensus 148 ~~~~~---~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 224 (325)
.+... .+...+++++|++.+++.+++.+++...... .+ ....+....+.++++.+++.....++.+. +|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE----RG---VPREAARARARELLARLNIPERLWHLPPA-TF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCchhhhhCCcc-cC
Confidence 44332 1234588999999888888988887653211 11 11222334567788999986333455665 49
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
|||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||+++.+
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~-~d~i~~~ 222 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV-ADRVMDV 222 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cceeEec
Confidence 99999999999999999999999999999999999999999999976688999999999988877 6888765
No 249
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=367.49 Aligned_cols=226 Identities=19% Similarity=0.270 Sum_probs=182.0
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...+.....
T Consensus 263 ~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~g~~~~~~~~~~~~ 336 (510)
T PRK09700 263 ETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV--DKRAGGEIRLNGKDISPRSPLDAV 336 (510)
T ss_pred CcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CcCCCCeEEECCEECCCCCHHHHH
Confidence 45899999998762 389999999999999999999999999999999998 679999999999988654433222
Q ss_pred hccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcC-C-CCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 155 LAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLG-Q-PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 155 ~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
+..++|++|++ .+++.+++.+++............ . ...........+.++++.+++..+..++.+.+ ||||||
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~ 415 (510)
T PRK09700 337 KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITE-LSGGNQ 415 (510)
T ss_pred HCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcccc-CChHHH
Confidence 34688999984 577888998887653211000000 0 00011222345678899999953457777765 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||+||||++++..+ ||++++|++|++++.++.
T Consensus 416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITV-CDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh-CCEEEEEECCEEEEEecC
Confidence 999999999999999999999999999999999999999977789999999999999887 699999999999988765
No 250
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-46 Score=333.73 Aligned_cols=186 Identities=30% Similarity=0.505 Sum_probs=166.4
Q ss_pred CCcEEEEEEEEEECCCc-------ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC
Q 020477 75 QPLLQVTGLTAVIAESK-------QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE 147 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~-------~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~ 147 (325)
.++++++||++.|+... ..+++||||+|++||++||||+||||||||-|+|+|| .+|++|+|.|+|+++..
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L--~~pt~G~i~f~g~~i~~ 79 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL--EEPTSGEILFEGKDITK 79 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC--cCCCCceEEEcCcchhh
Confidence 35899999999996422 3689999999999999999999999999999999998 78999999999998654
Q ss_pred CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChH
Q 020477 148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGG 227 (325)
Q Consensus 148 ~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG 227 (325)
++ ..+..+++.+.|+.+|+..+++++.+++ ||||
T Consensus 80 ~~---------------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhe-lSGG 113 (268)
T COG4608 80 LS---------------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHE-LSGG 113 (268)
T ss_pred cc---------------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcc-cCch
Confidence 32 0122345778899999988889999986 9999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|+||++|||||+.+|+++++|||+|+||...+.+++++|.+++++ |.|.++||||+..+..+ +|||+||+.|+|++.|
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i-sdri~VMy~G~iVE~g 192 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI-SDRIAVMYLGKIVEIG 192 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh-cccEEEEecCceeEec
Confidence 999999999999999999999999999999999999999999865 89999999999999988 6999999999999999
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+.+
T Consensus 193 ~~~ 195 (268)
T COG4608 193 PTE 195 (268)
T ss_pred CHH
Confidence 765
No 251
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-45 Score=341.52 Aligned_cols=226 Identities=25% Similarity=0.395 Sum_probs=194.7
Q ss_pred CCCcEEEEEEEEEECCC---------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020477 74 SQPLLQVTGLTAVIAES---------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN 144 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~---------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~ 144 (325)
..+.++.++|.+.|+-. ...+++++||++++||.+||||+||||||||-++|.++ . +.+|+|.|+|++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL--~-~s~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL--I-PSQGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh--c-CcCceEEECCcc
Confidence 46689999999999521 13589999999999999999999999999999999997 3 456999999999
Q ss_pred CCCCCHHHHh--hccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC
Q 020477 145 LLEMEPEERS--LAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV 220 (325)
Q Consensus 145 i~~~~~~~~~--~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 220 (325)
+..++.++.+ +..+-+|||||+ +-|.+++.+.+..+... ..+..+..+...++.++|+.+|+++...++++
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~v-----h~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV-----HEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhh-----cCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC
Confidence 9988765422 234667899996 56778888877655432 23345567777889999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 221 ~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
++ +|||||||++||||++.+|++++||||||+||...+.++.++|+++.++ |.+.++||||+..+..+ |++|+||++
T Consensus 425 hE-FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl-~~~viVm~~ 502 (534)
T COG4172 425 HE-FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRAL-CHRVIVMRD 502 (534)
T ss_pred cc-cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHh-hceEEEEeC
Confidence 86 9999999999999999999999999999999999999999999999754 88999999999999988 699999999
Q ss_pred CEEEEEcCcc
Q 020477 300 GRIIKTGDAS 309 (325)
Q Consensus 300 G~iv~~g~~~ 309 (325)
|+||+.|+.+
T Consensus 503 GkiVE~G~~~ 512 (534)
T COG4172 503 GKIVEQGPTE 512 (534)
T ss_pred CEEeeeCCHH
Confidence 9999999875
No 252
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.7e-46 Score=326.72 Aligned_cols=215 Identities=21% Similarity=0.312 Sum_probs=190.7
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
++++++|+++|+. +.+++|+||++++|++.|++|+|||||||.+|+|.|+ +.|++|+|.|+|.++... .. .
T Consensus 2 ~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl--le~~~G~I~~~g~~~~~~---~~--~ 72 (300)
T COG4152 2 ALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL--LEPTEGEITWNGGPLSQE---IK--N 72 (300)
T ss_pred ceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc--CCccCceEEEcCcchhhh---hh--h
Confidence 6899999999964 7899999999999999999999999999999999998 789999999999987532 22 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.|+|.|.+..+|+.+++.+.+.+.... ..+...+...++..+|+++++. ....+++. +||.|++|++.+..
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~L-------kGm~~~e~~~~~~~wLer~~i~-~~~~~kIk-~LSKGnqQKIQfis 143 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAEL-------KGMPKAEIQKKLQAWLERLEIV-GKKTKKIK-ELSKGNQQKIQFIS 143 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHh-------cCCcHHHHHHHHHHHHHhcccc-ccccchHH-HhhhhhhHHHHHHH
Confidence 488999999999999999887665432 2234567778889999999996 45666665 59999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+++++|+++|||||+|||||.+.+.+.+.+.+++++|.|||++||.|+-++.+ ||++++|++|+.|.+|+.+.
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeL-CD~llmL~kG~~V~~G~v~~ 216 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEEL-CDRLLMLKKGQTVLYGTVED 216 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHH-hhhhheecCCceEEeccHHH
Confidence 99999999999999999999999999999999999999999999999999998 69999999999999998764
No 253
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.3e-45 Score=322.98 Aligned_cols=203 Identities=23% Similarity=0.285 Sum_probs=166.1
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
..++++|++++|+...+.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+.... +
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~-~ 81 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF--LEAEEGKIEIDGIDISTIPLEDL-R 81 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCeEEECCEEhHHCCHHHH-H
Confidence 46999999999974334799999999999999999999999999999999998 67999999999998866554433 2
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|++|++.+++. ++.+++.... ..... .+.+.++ .++.+. .|||||+||++||
T Consensus 82 ~~i~~v~q~~~~~~~-tv~~~l~~~~----------~~~~~----~~~~~l~--------~~~~~~-~LS~G~~qrv~la 137 (207)
T cd03369 82 SSLTIIPQDPTLFSG-TIRSNLDPFD----------EYSDE----EIYGALR--------VSEGGL-NLSQGQRQLLCLA 137 (207)
T ss_pred hhEEEEecCCcccCc-cHHHHhcccC----------CCCHH----HHHHHhh--------ccCCCC-cCCHHHHHHHHHH
Confidence 368999999987764 8877763210 01111 1223332 233444 5999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||+.+|++|||||||++||+.+++.++++|+++. ++.|+|++||+++++.. +|++++|++|++++.|++
T Consensus 138 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~--~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 138 RALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID--YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh--CCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999985 47899999999998864 599999999999887753
No 254
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.6e-45 Score=337.84 Aligned_cols=211 Identities=17% Similarity=0.233 Sum_probs=173.6
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
.|+++||+++|+.+...+|+|+||+|++||+++|+|+||||||||+++|+|+ ++ ++|+|.++|.++...+...++ .
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl--~~-~~G~I~i~g~~i~~~~~~~lr-~ 77 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL--LN-TEGDIQIDGVSWNSVPLQKWR-K 77 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh--cC-CCcEEEECCEEhhhCCHHHHh-h
Confidence 3789999999964446799999999999999999999999999999999998 44 789999999998776655543 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCC----------CCCCh
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN----------EGFSG 226 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----------~~LSg 226 (325)
.++|+||++.+|+. ++.+++... .. ... +.+.+.++.+++. +..++.+. ..|||
T Consensus 78 ~i~~v~q~~~lf~~-tv~~nl~~~--------~~--~~~----~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~ 141 (275)
T cd03289 78 AFGVIPQKVFIFSG-TFRKNLDPY--------GK--WSD----EEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSH 141 (275)
T ss_pred hEEEECCCcccchh-hHHHHhhhc--------cC--CCH----HHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCH
Confidence 58899999998874 777776321 00 111 2345566777775 33444332 24999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|||||++|||||+.+|+||||||||++||+.+++.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 142 G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~--~dri~vl~~G~i~~~g 218 (275)
T cd03289 142 GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLE--CQRFLVIEENKVRQYD 218 (275)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHh--CCEEEEecCCeEeecC
Confidence 99999999999999999999999999999999999999999875 47899999999998864 6999999999999999
Q ss_pred CccH
Q 020477 307 DASI 310 (325)
Q Consensus 307 ~~~~ 310 (325)
+++.
T Consensus 219 ~~~~ 222 (275)
T cd03289 219 SIQK 222 (275)
T ss_pred CHHH
Confidence 8763
No 255
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-45 Score=320.16 Aligned_cols=186 Identities=24% Similarity=0.317 Sum_probs=157.7
Q ss_pred cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.|+++|+++.|++. ++++|+++||+|++||+++|+||||||||||+++|+|+...+|++|+|.++|+++. ...
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~- 77 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNF- 77 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHh-
Confidence 68999999999642 25699999999999999999999999999999999997323589999999999874 122
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
...+++++|++.+++..++.+++..... ++ .|||||+||++|
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------------------~~---------------~LSgGe~qrv~l 119 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSAL-----------------------LR---------------GLSVEQRKRLTI 119 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHH-----------------------Hh---------------cCCHHHhHHHHH
Confidence 2357899999888887888777543210 00 399999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH-HhhhCCcEEEEEeC-CEEEEEc
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMED-GRIIKTG 306 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~-~~~~~~d~i~vl~~-G~iv~~g 306 (325)
||||+.+|++|||||||++||+.+++.+++.|++++++|.|||++|||++. +... +|++++|++ |++++.|
T Consensus 120 a~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~-~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 120 GVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEK-FDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhh-CCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999987668899999999984 5565 699999999 9998764
No 256
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-44 Score=327.68 Aligned_cols=213 Identities=23% Similarity=0.351 Sum_probs=169.4
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++...+...++ ..
T Consensus 1 l~~~~l~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~v~~~g~~~~~~~~~~~~-~~ 76 (236)
T cd03253 1 IEFENVTFAYDP-GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF--YDVSSGSILIDGQDIREVTLDSLR-RA 76 (236)
T ss_pred CEEEEEEEEeCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCEEEECCEEhhhCCHHHHH-hh
Confidence 478999999963 25699999999999999999999999999999999998 679999999999988765544333 35
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH-----HhHHHHHHhc--CCccccccccCCCCCChHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERL--SMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQ 230 (325)
++|++|++.+++ .++.+++..... .....+.. ..+.+.++.+ ++. ...++.+. .|||||||
T Consensus 77 i~~~~q~~~~~~-~tv~~nl~~~~~---------~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~-~LS~G~~~ 144 (236)
T cd03253 77 IGVVPQDTVLFN-DTIGYNIRYGRP---------DATDEEVIEAAKAAQIHDKIMRFPDGYD-TIVGERGL-KLSGGEKQ 144 (236)
T ss_pred EEEECCCChhhc-chHHHHHhhcCC---------CCCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCC-cCCHHHHH
Confidence 889999998775 588777644311 00111111 1122333444 222 23344454 59999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+|||||+.+|++|||||||+|||+.+++.+.+.|.++.+ |.|||++||+++++.. ||++++|++|++++.|+.+
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~--~d~~~~l~~g~i~~~~~~~ 220 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN--ADKIIVLKDGRIVERGTHE 220 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh--CCEEEEEECCEEEeeCCHH
Confidence 99999999999999999999999999999999999999976 8899999999998864 6999999999999888754
No 257
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-47 Score=323.15 Aligned_cols=221 Identities=21% Similarity=0.326 Sum_probs=191.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
|++++||+++|++ +.+++++|++|++|.+++|+|||||||||||.+++.| .+.++|+|+++|.++..++.+..++.
T Consensus 1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL--~~~d~G~i~i~g~~~~~~~s~~LAk~ 76 (252)
T COG4604 1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL--LKKDSGEITIDGLELTSTPSKELAKK 76 (252)
T ss_pred CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHh--ccccCceEEEeeeecccCChHHHHHH
Confidence 6899999999964 7899999999999999999999999999999999998 67899999999999999887776543
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
+...-|.......+|+.+.+.++..+.. .+.. ..+.+..+.++++.+.+. ++.++...+ ||||||||..||+
T Consensus 77 -lSILkQ~N~i~~rlTV~dLv~FGRfPYS--qGRl---t~eD~~~I~~aieyl~L~-~l~dryLd~-LSGGQrQRAfIAM 148 (252)
T COG4604 77 -LSILKQENHINSRLTVRDLVGFGRFPYS--QGRL---TKEDRRIINEAIEYLHLE-DLSDRYLDE-LSGGQRQRAFIAM 148 (252)
T ss_pred -HHHHHhhchhhheeEHHHHhhcCCCccc--CCCC---chHHHHHHHHHHHHhccc-chHHHhHHh-cccchhhhhhhhe
Confidence 3444577777777899998877643321 1222 234566788889999996 677888875 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
.++++.+.++||||.++||..+...+++.|++++++ |+||++|-||.+++..+ +|+|+-|++|+++..|+++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y-sD~IVAlK~G~vv~~G~~~e 222 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY-SDHIVALKNGKVVKQGSPDE 222 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh-hhheeeecCCEEEecCCHHH
Confidence 999999999999999999999999999999999876 99999999999999987 79999999999999999874
No 258
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-45 Score=402.61 Aligned_cols=268 Identities=18% Similarity=0.207 Sum_probs=204.6
Q ss_pred hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCC-CCCCC--CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020477 30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSS-DGQDE--KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGE 106 (325)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~--~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge 106 (325)
.++.++......+.....+.+|+.+.++.+++...... ..+.. +....|+++||+++|+++.+++|+|+||+|++||
T Consensus 1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~Ge 1266 (1622)
T PLN03130 1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSE 1266 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCC
Confidence 34444555556678888889999988765554321111 11111 1234799999999997544579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
.+||+|+||||||||+++|.|+ ++|++|+|.+||.++..++....++ .+++++|+|.+|.+ |..+|+....
T Consensus 1267 kVaIVGrSGSGKSTLl~lL~rl--~~p~~G~I~IDG~dI~~i~l~~LR~-~IsiVpQdp~LF~G-TIreNLd~~~----- 1337 (1622)
T PLN03130 1267 KVGIVGRTGAGKSSMLNALFRI--VELERGRILIDGCDISKFGLMDLRK-VLGIIPQAPVLFSG-TVRFNLDPFN----- 1337 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCceEEECCEecccCCHHHHHh-ccEEECCCCccccc-cHHHHhCcCC-----
Confidence 9999999999999999999998 8899999999999999998877654 48899999999986 8888875321
Q ss_pred hcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020477 187 KLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~ 261 (325)
..++++.++. +.+.++.++.+.+..-..-+.+||||||||++|||||+++|+|||||||||+||.++.+.
T Consensus 1338 -----~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~ 1412 (1622)
T PLN03130 1338 -----EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412 (1622)
T ss_pred -----CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence 1223332222 223333332221111122234699999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHh
Q 020477 262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE 316 (325)
Q Consensus 262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~ 316 (325)
|.+.|++..+ ++|+|+|+|+++.+.. +|+|+||++|+|++.|+++ +++++
T Consensus 1413 Iq~~I~~~~~-~~TvI~IAHRL~tI~~--~DrIlVLd~G~IvE~Gt~~--eLl~~ 1462 (1622)
T PLN03130 1413 IQKTIREEFK-SCTMLIIAHRLNTIID--CDRILVLDAGRVVEFDTPE--NLLSN 1462 (1622)
T ss_pred HHHHHHHHCC-CCEEEEEeCChHHHHh--CCEEEEEECCEEEEeCCHH--HHHhC
Confidence 9999998754 6899999999998875 6999999999999999875 45554
No 259
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=6.3e-45 Score=320.19 Aligned_cols=185 Identities=30% Similarity=0.348 Sum_probs=158.3
Q ss_pred cEEEEEEEEEECCC----cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC--CCCccEEEECCEeCCCCCH
Q 020477 77 LLQVTGLTAVIAES----KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY--EVTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 77 ~l~~~~ls~~y~~~----~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~--~p~~G~I~~~g~~i~~~~~ 150 (325)
.++++||+++|++. .+.+|+++||+|++||+++|+||||||||||+++|+|+ + +|++|+|.++|+++...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl--~~~~~~~G~i~~~g~~~~~~-- 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR--RTGLGVSGEVLINGRPLDKR-- 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCceEEEECCEeCchH--
Confidence 58999999999742 25799999999999999999999999999999999998 6 79999999999987541
Q ss_pred HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
. .+..+++++|++.+++..++.+++.... . + . .|||||+|
T Consensus 79 -~-~~~~i~~~~q~~~~~~~~t~~~~i~~~~-------------------~----~-------~--------~LS~G~~q 118 (194)
T cd03213 79 -S-FRKIIGYVPQDDILHPTLTVRETLMFAA-------------------K----L-------R--------GLSGGERK 118 (194)
T ss_pred -h-hhheEEEccCcccCCCCCcHHHHHHHHH-------------------H----h-------c--------cCCHHHHH
Confidence 2 2235889999998888778776653210 0 0 0 39999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh-HHhhhCCcEEEEEeCCEEEEEc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR-LLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~-~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++.|||++|||++ .+..+ +|++++|++|++++.|
T Consensus 119 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~-~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 119 RVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFEL-FDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHh-cCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998766899999999986 56666 6999999999998654
No 260
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-45 Score=317.74 Aligned_cols=175 Identities=26% Similarity=0.449 Sum_probs=151.0
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC--HHHHhh
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME--PEERSL 155 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~--~~~~~~ 155 (325)
++++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+ ... .+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~~ 75 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL--EEPDSGSILIDGEDLTDLEDELPP-LR 75 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccchhHHH-Hh
Confidence 478999999964 5799999999999999999999999999999999998 6789999999999987654 222 23
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..+++++|++.+++..++.+++. . .||||||||++||
T Consensus 76 ~~i~~~~q~~~~~~~~t~~~~l~--------------------------------~-----------~lS~G~~qr~~la 112 (178)
T cd03229 76 RRIGMVFQDFALFPHLTVLENIA--------------------------------L-----------GLSGGQQQRVALA 112 (178)
T ss_pred hcEEEEecCCccCCCCCHHHhee--------------------------------e-----------cCCHHHHHHHHHH
Confidence 46889999987665555433210 0 0999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
|||+.+|++|||||||+|||+.++..+.++|++++++ +.|+|++|||++++..+ +|++++|++|+
T Consensus 113 ~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~g~ 178 (178)
T cd03229 113 RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL-ADRVVVLRDGK 178 (178)
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEeCCC
Confidence 9999999999999999999999999999999999876 78999999999999877 69999999884
No 261
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.6e-45 Score=316.68 Aligned_cols=178 Identities=29% Similarity=0.431 Sum_probs=150.6
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++|++++|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++... .... +..
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~-~~~~-~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD--LKPQQGEITLDGVPVSDL-EKAL-SSL 76 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCCEEEECCEEHHHH-HHHH-Hhh
Confidence 478999999974323699999999999999999999999999999999998 679999999999987543 2222 235
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++|++.+++ .++.+++ +. .|||||+||++||||
T Consensus 77 i~~~~q~~~~~~-~tv~~~i------------------------------------------~~-~LS~G~~qrv~lara 112 (178)
T cd03247 77 ISVLNQRPYLFD-TTLRNNL------------------------------------------GR-RFSGGERQRLALARI 112 (178)
T ss_pred EEEEccCCeeec-ccHHHhh------------------------------------------cc-cCCHHHHHHHHHHHH
Confidence 888999886543 2332221 22 499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|+.+|++|||||||++||+.+++.+++.|+++. ++.|||++|||++++. . +|++++|++|++++.|
T Consensus 113 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~-~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 113 LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE-H-MDKILFLENGKIIMQG 178 (178)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-h-CCEEEEEECCEEEecC
Confidence 999999999999999999999999999999985 4789999999999986 4 6999999999998754
No 262
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=328.68 Aligned_cols=221 Identities=23% Similarity=0.335 Sum_probs=177.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-C--CCccEEEECCEeCCCCC--HH
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-E--VTEGSVVFKGENLLEME--PE 151 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-~--p~~G~I~~~g~~i~~~~--~~ 151 (325)
+++++||++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+... + |++|+|.++|+++...+ ..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 5899999999963 5799999999999999999999999999999999997321 2 48999999999886422 22
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGE 228 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGq 228 (325)
.. +..++|++|++.+|+. ++.+++...... .+. ........++.+.++.+++.. +..++.+. .|||||
T Consensus 81 ~~-~~~i~~~~q~~~~~~~-t~~~nl~~~~~~----~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS~Gq 151 (250)
T PRK14266 81 EL-RKKVGMVFQKPNPFPK-SIFDNVAYGLRI----HGE--DDEDFIEERVEESLKAAALWDEVKDKLDKSAL-GLSGGQ 151 (250)
T ss_pred HH-hhheEEEecCCccCcc-hHHHHHHhHHhh----cCC--CCHHHHHHHHHHHHHHcCCchhHHHHHhCCcc-cCCHHH
Confidence 22 3468999999988875 888887554321 111 111223355667788887732 23455555 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||++|||||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++||+++++..+ +|++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~-~~~i~~l~~G~i~~~g~~ 229 (250)
T PRK14266 152 QQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRV-SKYTSFFLNGEIIESGLT 229 (250)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhh-cCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999999864 68999999999999887 699999999999999986
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 230 ~~ 231 (250)
T PRK14266 230 DQ 231 (250)
T ss_pred HH
Confidence 54
No 263
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=331.21 Aligned_cols=225 Identities=23% Similarity=0.312 Sum_probs=177.4
Q ss_pred CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCC-
Q 020477 73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEM- 148 (325)
Q Consensus 73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~- 148 (325)
...++|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.... +++|+|.++|.++...
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 34668999999999964 57999999999999999999999999999999999983211 2799999999876421
Q ss_pred ---CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCC
Q 020477 149 ---EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNE 222 (325)
Q Consensus 149 ---~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~ 222 (325)
....+ +..+++++|++.+++. ++.+++...... .+.. ......+.+.++++.+++.. +..++.+.
T Consensus 90 ~~~~~~~~-~~~i~~~~q~~~~~~~-tv~eni~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~- 160 (265)
T PRK14252 90 PEVDPIEV-RMRISMVFQKPNPFPK-SIFENVAYGLRI----RGVK--RRSILEERVENALRNAALWDEVKDRLGDLAF- 160 (265)
T ss_pred cccCHHHH-hccEEEEccCCcCCcc-hHHHHHHhHHHH----cCCC--hHHHHHHHHHHHHHHcCCchhhhHHHhCCcc-
Confidence 12222 3468899999988875 888887654321 1111 01112234556667776531 23455555
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
.|||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||+||||++++..+ ||++++|++|++
T Consensus 161 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~-~d~i~~l~~G~i 238 (265)
T PRK14252 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARV-SDYTAYMYMGEL 238 (265)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHh-CCEEEEEECCEE
Confidence 4999999999999999999999999999999999999999999999865 58999999999999877 699999999999
Q ss_pred EEEcCccH
Q 020477 303 IKTGDASI 310 (325)
Q Consensus 303 v~~g~~~~ 310 (325)
++.|+.+.
T Consensus 239 ~~~g~~~~ 246 (265)
T PRK14252 239 IEFGATDT 246 (265)
T ss_pred EEeCCHHH
Confidence 99998653
No 264
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6e-45 Score=364.74 Aligned_cols=223 Identities=24% Similarity=0.352 Sum_probs=181.9
Q ss_pred CCcEEEEEEEEEECC---CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC-CEe---CCC
Q 020477 75 QPLLQVTGLTAVIAE---SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK-GEN---LLE 147 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~---~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~-g~~---i~~ 147 (325)
.++|+++||+++|++ +.+.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++ |.+ +..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV--LEPTSGEVNVRVGDEWVDMTK 354 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEEecCCccccccc
Confidence 568999999999952 235699999999999999999999999999999999998 67899999996 643 222
Q ss_pred CCHH--HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc----ccccccCC
Q 020477 148 MEPE--ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT----DFLNRNVN 221 (325)
Q Consensus 148 ~~~~--~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 221 (325)
.+.. ...+..++|++|++.+++.+++.+++...... .. ...+...++.++++.+++.. +.+++.+.
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-----~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 426 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-----EL---PDELARMKAVITLKMVGFDEEKAEEILDKYPD 426 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-----CC---CHHHHHHHHHHHHHhCCCCCccchhhhhCChh
Confidence 2211 11123588999999888888999888654211 11 11222345677899999953 24677776
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
+ |||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||+||||++++..+ ||++++|++|
T Consensus 427 ~-LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~-~d~i~~l~~G 504 (520)
T TIGR03269 427 E-LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDV-CDRAALMRDG 504 (520)
T ss_pred h-CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHh-CCEEEEEECC
Confidence 5 9999999999999999999999999999999999999999999999754 88999999999999887 6999999999
Q ss_pred EEEEEcCcc
Q 020477 301 RIIKTGDAS 309 (325)
Q Consensus 301 ~iv~~g~~~ 309 (325)
++++.|+++
T Consensus 505 ~i~~~g~~~ 513 (520)
T TIGR03269 505 KIVKIGDPE 513 (520)
T ss_pred EEEEECCHH
Confidence 999988764
No 265
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-44 Score=397.12 Aligned_cols=265 Identities=16% Similarity=0.217 Sum_probs=201.5
Q ss_pred hHhhhhhhhhhhhccHHHHHHHhhccCCCCCC-CCCCCCC--CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEE
Q 020477 34 PLLCRRSNYHRHHLSLNRVTAALSAVDSPLKS-SSDGQDE--KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAI 110 (325)
Q Consensus 34 ~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~l 110 (325)
.+......++....+.+|+.+.++.+++.... ....+.. +....|+++||+++|+++.+++|+|+||+|++||.+||
T Consensus 1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaI 1267 (1495)
T PLN03232 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGV 1267 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEE
Confidence 33344456778888899999887655443221 1111111 12346999999999965446799999999999999999
Q ss_pred EcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCC
Q 020477 111 MGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ 190 (325)
Q Consensus 111 vG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (325)
+|+||||||||+++|.|+ ++|++|+|.+||.++..++...+++ .+++++|+|.+|++ |..+|+....
T Consensus 1268 VG~SGSGKSTL~~lL~rl--~~p~~G~I~IdG~di~~i~~~~lR~-~i~iVpQdp~LF~g-TIr~NL~~~~--------- 1334 (1495)
T PLN03232 1268 VGRTGAGKSSMLNALFRI--VELEKGRIMIDDCDVAKFGLTDLRR-VLSIIPQSPVLFSG-TVRFNIDPFS--------- 1334 (1495)
T ss_pred ECCCCCCHHHHHHHHhCC--CcCCCceEEECCEEhhhCCHHHHHh-hcEEECCCCeeeCc-cHHHHcCCCC---------
Confidence 999999999999999998 7899999999999999988876554 48899999999986 8888874321
Q ss_pred CCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHH
Q 020477 191 PEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265 (325)
Q Consensus 191 ~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~ 265 (325)
+.++++.++. +.+.++.++.+.+..-..-+.+||||||||++|||||+++|+|||||||||+||.++.+.|.+.
T Consensus 1335 -~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~ 1413 (1495)
T PLN03232 1335 -EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT 1413 (1495)
T ss_pred -CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence 1223332222 1222333322111111222346999999999999999999999999999999999999999999
Q ss_pred HHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhC
Q 020477 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG 317 (325)
Q Consensus 266 L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~ 317 (325)
|++.. +++|+|+|+|+++.+.. +|+|+||++|+|++.|+++ +++++.
T Consensus 1414 L~~~~-~~~TvI~IAHRl~ti~~--~DrIlVL~~G~ivE~Gt~~--eLl~~~ 1460 (1495)
T PLN03232 1414 IREEF-KSCTMLVIAHRLNTIID--CDKILVLSSGQVLEYDSPQ--ELLSRD 1460 (1495)
T ss_pred HHHHc-CCCEEEEEeCCHHHHHh--CCEEEEEECCEEEEECCHH--HHHhCC
Confidence 99875 46899999999988876 6999999999999999875 455554
No 266
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.7e-45 Score=318.76 Aligned_cols=179 Identities=28% Similarity=0.463 Sum_probs=151.2
Q ss_pred EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020477 79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL 158 (325)
Q Consensus 79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 158 (325)
+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+...++ ..+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~--~~~~~G~v~~~g~~~~~~~~~~~~-~~i 75 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL--LKPSSGEILLDGKDLASLSPKELA-RKI 75 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCcCCHHHHH-HHH
Confidence 47899999964 5799999999999999999999999999999999998 679999999999998765543322 234
Q ss_pred EEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH
Q 020477 159 FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238 (325)
Q Consensus 159 ~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL 238 (325)
+|+|| +++.+++. +..++.+. .|||||+||++|||||
T Consensus 76 ~~~~q-----------------------------------------~l~~~gl~-~~~~~~~~-~LS~G~~qrl~laral 112 (180)
T cd03214 76 AYVPQ-----------------------------------------ALELLGLA-HLADRPFN-ELSGGERQRVLLARAL 112 (180)
T ss_pred hHHHH-----------------------------------------HHHHcCCH-hHhcCCcc-cCCHHHHHHHHHHHHH
Confidence 55554 23445553 33445554 4999999999999999
Q ss_pred HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 239 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
+.+|++|||||||+|||+.+++.+.+.|.+++++ +.|+|++||+++++..+ +|++++|++|++++.|
T Consensus 113 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILLKDGRIVAQG 180 (180)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999765 78999999999998777 6999999999997643
No 267
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.1e-45 Score=329.11 Aligned_cols=216 Identities=22% Similarity=0.320 Sum_probs=169.5
Q ss_pred CCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 74 SQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
..++++++|++++|++. ++.+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++...+...
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF--YQPQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCcEEEECCCchHHcCHHH
Confidence 46789999999999742 24699999999999999999999999999999999998 6799999999998876544333
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc--CCccccccccCCCCCChHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL--SMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQ 230 (325)
+ ...+++++|++.+++ .++.+++...... ..............+.+.++.+ ++. ...++.+. +|||||||
T Consensus 86 ~-~~~i~~~~q~~~l~~-~tv~~nl~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~-~LSgG~~q 157 (226)
T cd03248 86 L-HSKVSLVGQEPVLFA-RSLQDNIAYGLQS----CSFECVKEAAQKAHAHSFISELASGYD-TEVGEKGS-QLSGGQKQ 157 (226)
T ss_pred H-HhhEEEEecccHHHh-hhHHHHhccccCC----CCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCC-cCCHHHHH
Confidence 2 245889999987765 4777776432110 0000000000112245667777 564 34566665 49999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++. . ||++++|++|++
T Consensus 158 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~-~-~d~i~~l~~g~i 226 (226)
T cd03248 158 RVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVE-R-ADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHH-h-CCEEEEecCCcC
Confidence 99999999999999999999999999999999999999865 589999999999985 4 699999999874
No 268
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=7.8e-45 Score=331.32 Aligned_cols=210 Identities=22% Similarity=0.289 Sum_probs=173.9
Q ss_pred EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020477 79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL 158 (325)
Q Consensus 79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 158 (325)
+++||++. .+|+|+||+|++||+++|+|+||||||||+++|+|+ . |.+|+|.++|+++...+...++ ..+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl--~-~~~G~i~~~g~~i~~~~~~~~~-~~i 71 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL--L-PGSGSIQFAGQPLEAWSAAELA-RHR 71 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--C-CCCeEEEECCEecCcCCHHHHh-hhe
Confidence 57888874 279999999999999999999999999999999997 4 3589999999998766554433 247
Q ss_pred EEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH
Q 020477 159 FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238 (325)
Q Consensus 159 ~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL 238 (325)
+|++|++.+++..++.+++..... .. ....+....+.++++.+++. +..++.+.. ||||||||++|||||
T Consensus 72 ~~v~q~~~~~~~~tv~~nl~~~~~-----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~al 141 (248)
T PRK03695 72 AYLSQQQTPPFAMPVFQYLTLHQP-----DK---TRTEAVASALNEVAEALGLD-DKLGRSVNQ-LSGGEWQRVRLAAVV 141 (248)
T ss_pred EEecccCccCCCccHHHHHHhcCc-----cC---CCcHHHHHHHHHHHHHcCCH-hHhcCCccc-CCHHHHHHHHHHHHH
Confidence 899999877777888887654311 00 11122345677889999985 456677664 999999999999999
Q ss_pred Hh-------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 239 VL-------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 239 ~~-------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+. +|++|||||||+|||+.+++.+.++|+++.++|.|||++|||++++..+ ||++++|++|++++.|+.+
T Consensus 142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~ 218 (248)
T PRK03695 142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRH-ADRVWLLKQGKLLASGRRD 218 (248)
T ss_pred hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEECCHH
Confidence 97 6799999999999999999999999999976788999999999988887 6999999999999998764
No 269
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.3e-45 Score=310.64 Aligned_cols=162 Identities=33% Similarity=0.515 Sum_probs=142.2
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++|++++|++ +++|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+.....+..
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~v~~~g~~~~~~~~~~~~~~~ 76 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL--YKPDSGEILVDGKEVSFASPRDARRAG 76 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEECCcCCHHHHHhcC
Confidence 478999999964 5799999999999999999999999999999999998 679999999999987654432211223
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++| |||||+||++||||
T Consensus 77 i~~~~q------------------------------------------------------------LS~G~~qrl~lara 96 (163)
T cd03216 77 IAMVYQ------------------------------------------------------------LSVGERQMVEIARA 96 (163)
T ss_pred eEEEEe------------------------------------------------------------cCHHHHHHHHHHHH
Confidence 444433 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
|+.+|++|||||||++||+.+++.+.+.|+++.+++.|||++|||++.+..+ +|++++|++|++++
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l~~g~i~~ 162 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVLRDGRVVG 162 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEe
Confidence 9999999999999999999999999999999976688999999999988877 69999999999875
No 270
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.9e-45 Score=363.62 Aligned_cols=210 Identities=22% Similarity=0.298 Sum_probs=173.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|.++...+...++ .
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~--~~p~~G~i~~~~~~~~~~~~~~~~-~ 77 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE--LPLLSGERQSQFSHITRLSFEQLQ-K 77 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCceEEECCcccccCCHHHHH-H
Confidence 6999999999964 5699999999999999999999999999999999998 679999999999877554433322 2
Q ss_pred cEEEeccCCcc--CC------CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020477 157 GLFMSFQSPVE--IP------GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE 228 (325)
Q Consensus 157 ~i~~~~Q~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq 228 (325)
.+++++|++.. +. .+++.+++.. ..+...++.++++.+++. +..++.+.+ |||||
T Consensus 78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~ 140 (490)
T PRK10938 78 LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQD---------------EVKDPARCEQLAQQFGIT-ALLDRRFKY-LSTGE 140 (490)
T ss_pred HhceeccCcchhhcccchhhccccHHHhccc---------------chhHHHHHHHHHHHcCCH-hhhhCCccc-CCHHH
Confidence 47788998642 11 1222222110 011234567789999996 567777765 99999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
||||+|||||+.+|++|||||||+|||+.+++++.++|++++++|.|||+||||++++..+ ||++++|++|+++..|++
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~-~d~v~~l~~G~i~~~~~~ 219 (490)
T PRK10938 141 TRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDF-VQFAGVLADCTLAETGER 219 (490)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhh-CCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999977788999999999999887 699999999999998876
Q ss_pred c
Q 020477 309 S 309 (325)
Q Consensus 309 ~ 309 (325)
+
T Consensus 220 ~ 220 (490)
T PRK10938 220 E 220 (490)
T ss_pred H
Confidence 4
No 271
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.2e-45 Score=379.89 Aligned_cols=264 Identities=19% Similarity=0.283 Sum_probs=207.9
Q ss_pred hhhhhhhccHHHHHHHhhccCCCCCCCCCC-CCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCcc
Q 020477 40 SNYHRHHLSLNRVTAALSAVDSPLKSSSDG-QDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSG 117 (325)
Q Consensus 40 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsG 117 (325)
.++-++..++.++..+++..++........ ....-..-++++||+|+||.. +.++|+|+||+|++|+.+|||||||||
T Consensus 949 Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen 949 PDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCC
Confidence 456777777888888887766443332111 122234469999999999852 356999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHH
Q 020477 118 KSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197 (325)
Q Consensus 118 KSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (325)
|||.+.+|-.+ |.|++|.|.+||.++.+++.+..|+ .++.|.|+|.+|.. |..||+..+. ..++.++
T Consensus 1029 KSTvI~LLeRf--Ydp~~G~V~IDg~dik~lnl~~LR~-~i~lVsQEP~LF~~-TIrENI~YG~---------~~vs~~e 1095 (1228)
T KOG0055|consen 1029 KSTVISLLERF--YDPDAGKVKIDGVDIKDLNLKWLRK-QIGLVSQEPVLFNG-TIRENIAYGS---------EEVSEEE 1095 (1228)
T ss_pred HHHHHHHHHHh--cCCCCCeEEECCcccccCCHHHHHH-hcceeccCchhhcc-cHHHHHhccC---------CCCCHHH
Confidence 99999999998 8999999999999999999877654 47888999998864 7888876551 1122333
Q ss_pred HH-----HhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC
Q 020477 198 FY-----AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP 272 (325)
Q Consensus 198 ~~-----~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~ 272 (325)
.. +.+.+.+..+.-+.+..-...+.+||||||||+|||||+++||+||||||.||+||.++++.+.+.|.+.. .
T Consensus 1096 Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~ 1174 (1228)
T KOG0055|consen 1096 IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-E 1174 (1228)
T ss_pred HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-c
Confidence 32 23445566665543333333345799999999999999999999999999999999999999999999975 5
Q ss_pred CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCeec
Q 020477 273 KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKA 321 (325)
Q Consensus 273 g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~~ 321 (325)
|+|.|+|+|.+..+.. ||.|+|+++|+|++.|+. .++++.+|.|+
T Consensus 1175 gRT~IvIAHRLSTIqn--aD~I~Vi~~G~VvE~GtH--~~L~~~~G~Y~ 1219 (1228)
T KOG0055|consen 1175 GRTTIVIAHRLSTIQN--ADVIAVLKNGKVVEQGTH--DELLAKRGIYF 1219 (1228)
T ss_pred CCcEEEEecchhhhhc--CCEEEEEECCEEEecccH--HHHHhCCCchH
Confidence 7899999998888875 699999999999999965 57888888554
No 272
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-45 Score=320.90 Aligned_cols=193 Identities=25% Similarity=0.329 Sum_probs=159.5
Q ss_pred cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCHH
Q 020477 77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~~ 151 (325)
.+.++||+|.|+.+ ++.+|+++||+|++||+++|+||||||||||+++|+|+ ++ |++|+|.++|.++......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR--TEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc--CCCCCCcceEEEECCEECccchhh
Confidence 58899999999753 56799999999999999999999999999999999998 55 8999999999988654322
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
.+..++|++|++.+++.+++.+++..... +. .++.+. .|||||+||
T Consensus 81 --~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------------------~~--------~~~~~~-~LS~Ge~qr 126 (202)
T cd03233 81 --YPGEIIYVSEEDVHFPTLTVRETLDFALR-----------------------CK--------GNEFVR-GISGGERKR 126 (202)
T ss_pred --hcceEEEEecccccCCCCcHHHHHhhhhh-----------------------hc--------cccchh-hCCHHHHHH
Confidence 23458899999988888888887643210 00 223343 499999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEE-eCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMI-THYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIiv-tHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
++|||||+.+|++|||||||+|||+.+++.+++.|+++.++ +.|+|++ +|+.+.+... ||++++|++|++++.|
T Consensus 127 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~-~d~i~~l~~G~i~~~g 202 (202)
T cd03233 127 VSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDL-FDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHh-CCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999998765 5666655 5556777776 6999999999998654
No 273
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=8.2e-45 Score=327.49 Aligned_cols=203 Identities=26% Similarity=0.354 Sum_probs=165.0
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC----CccEEEECCEeCCCCCHHHHhhccEEEeccCCc--c
Q 020477 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV----TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPV--E 167 (325)
Q Consensus 94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p----~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~--~ 167 (325)
+|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... ......+++++|++. +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~~~~~G~i~~~g~~~~~~---~~~~~~i~~~~q~~~~~~ 75 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGL--LPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQNPRTAF 75 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCccCccccEEEECCEechhh---hhhhheeEEEecCchhhc
Confidence 58999999999999999999999999999999998 567 899999999987543 222235889999985 4
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCCCCCChHHHHHHHHHHHHHhCCCEE
Q 020477 168 IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVNEGFSGGERKRNEILQLAVLGADLA 245 (325)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lL 245 (325)
++.+++.+++...... .+.. ..+...++.++++.+++.. +..++.+.. |||||||||+|||||+.+|++|
T Consensus 76 ~~~~t~~~~~~~~~~~----~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-LS~G~~qrv~laral~~~p~vl 147 (230)
T TIGR02770 76 NPLFTMGNHAIETLRS----LGKL---SKQARALILEALEAVGLPDPEEVLKKYPFQ-LSGGMLQRVMIALALLLEPPFL 147 (230)
T ss_pred CcccCHHHHHHHHHHH----cCcc---HHHHHHHHHHHHHHcCCCchHHHHhCChhh-cCHHHHHHHHHHHHHhcCCCEE
Confidence 4556777766433211 1111 1223355778899999852 345666654 9999999999999999999999
Q ss_pred EEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 246 ILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 246 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||||+|||+.+++.+.+.|++++++ |+|||++|||++++..+ +|++++|++|++++.|+++.
T Consensus 148 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~~ 212 (230)
T TIGR02770 148 IADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARI-ADEVAVMDDGRIVERGTVKE 212 (230)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999998764 78999999999998877 69999999999999987653
No 274
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=336.07 Aligned_cols=229 Identities=23% Similarity=0.294 Sum_probs=178.2
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCC-
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEME- 149 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~- 149 (325)
..++|+++||+++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+... .|++|+|.++|.++....
T Consensus 42 ~~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CCceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4568999999999964 5799999999999999999999999999999999998311 268999999999875422
Q ss_pred -HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc-C----CCCCC-hHHHHHhHHHHHHhcCCcc---cccccc
Q 020477 150 -PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL-G----QPEIG-PIEFYAYLYPKLERLSMKT---DFLNRN 219 (325)
Q Consensus 150 -~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~-~~~~~~~~~~~l~~~~l~~---~~~~~~ 219 (325)
.... +..++|++|++.+++. ++.+++........... + ..... .......+.++++.+++.. +..++.
T Consensus 120 ~~~~~-~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 197 (305)
T PRK14264 120 NLVEL-RKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN 197 (305)
T ss_pred cHHHH-hhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence 2222 2358999999987774 88888765432110000 0 00000 1122345667788887731 234555
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEE-EEEe
Q 020477 220 VNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFI-HIME 298 (325)
Q Consensus 220 ~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i-~vl~ 298 (325)
+. +|||||+|||+|||||+++|+||||||||+|||+.+++.+.++|++++++ .|||++|||++++..+ ||++ ++|+
T Consensus 198 ~~-~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~~i~~~-~d~i~~~l~ 274 (305)
T PRK14264 198 AL-GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAARI-SDQTAVFLT 274 (305)
T ss_pred cc-cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHHHHHHh-cCEEEEEec
Confidence 55 49999999999999999999999999999999999999999999999764 7999999999998887 6886 5679
Q ss_pred CCEEEEEcCcc
Q 020477 299 DGRIIKTGDAS 309 (325)
Q Consensus 299 ~G~iv~~g~~~ 309 (325)
+|++++.|+++
T Consensus 275 ~G~i~~~g~~~ 285 (305)
T PRK14264 275 GGELVEYDDTD 285 (305)
T ss_pred CCEEEEeCCHH
Confidence 99999999865
No 275
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.5e-44 Score=324.77 Aligned_cols=202 Identities=23% Similarity=0.328 Sum_probs=165.4
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
+.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++....
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~-------- 90 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI--YPPDSGTVTVRGRVSSLLG-------- 90 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEchhhc--------
Confidence 788999999964 6799999999999999999999999999999999998 6799999999998753110
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+...+++..++.+++...... .+ ....+....+.++++.+++. +..++.+.+ ||||||||++||||
T Consensus 91 -----~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~lara 156 (224)
T cd03220 91 -----LGGGFNPELTGRENIYLNGRL----LG---LSRKEIDEKIDEIIEFSELG-DFIDLPVKT-YSSGMKARLAFAIA 156 (224)
T ss_pred -----ccccCCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHHHHHHHH
Confidence 111233456888877554221 11 11223334566778888885 556777764 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|+.+|++|||||||+|||+.+++.+.+.|+++++++.|||++|||++++..+ +|++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRL-CDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999876688999999999998877 6999999999998764
No 276
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.6e-44 Score=362.40 Aligned_cols=240 Identities=24% Similarity=0.280 Sum_probs=181.9
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCC-C-CCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCC
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSD-G-QDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEG 105 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~G 105 (325)
+..|+.++......++....+.+|+.++++.+++....... . ........++++||+|+|+++ +++|+|+||+|++|
T Consensus 283 ~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G 361 (529)
T TIGR02868 283 AFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPG 361 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCC
Confidence 45677788888889999999999999988655432111111 0 011123459999999999753 56999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR 185 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~ 185 (325)
|++||+||||||||||+++|+|+ ++|++|+|.+||.++.++ ....+ ..+++++|+|.+|++ |..+|+..+
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~i~g~~i~~~-~~~lr-~~i~~V~Q~~~lF~~-TI~eNI~~g----- 431 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGL--LDPLQGEVTLDGVSVSSL-QDELR-RRISVFAQDAHLFDT-TVRDNLRLG----- 431 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhH-HHHHH-hheEEEccCcccccc-cHHHHHhcc-----
Confidence 99999999999999999999998 889999999999999988 65554 358999999999876 788887553
Q ss_pred hhcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHH
Q 020477 186 RKLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260 (325)
Q Consensus 186 ~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~ 260 (325)
.++.++++..+. +.+.++.+..+.+..-..-+..||||||||++|||||+++|++||||||||+||+++++
T Consensus 432 ----~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~ 507 (529)
T TIGR02868 432 ----RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTES 507 (529)
T ss_pred ----CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 222233332221 22233333222121111223469999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEeCCh
Q 020477 261 DVAKAVNGLLTPKNSLLMITHYR 283 (325)
Q Consensus 261 ~i~~~L~~l~~~g~tvIivtHd~ 283 (325)
.+.+.|.++. +++|+|+|||++
T Consensus 508 ~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 508 ELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHhc-CCCEEEEEecCC
Confidence 9999999874 468999999974
No 277
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.9e-44 Score=394.39 Aligned_cols=268 Identities=19% Similarity=0.255 Sum_probs=208.5
Q ss_pred hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCC-CCCCCCC--CCCCcEEEEEEEEEECCCcccceeeeEEEEeCC
Q 020477 29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKS-SSDGQDE--KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEG 105 (325)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~G 105 (325)
..|+..+......+.....+.+|+.++.+.+++.... ....+.. +....|+++||+++|+++..++|+|+||+|++|
T Consensus 1233 ~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~G 1312 (1522)
T TIGR00957 1233 TFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGG 1312 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCC
Confidence 4566667777788899999999999988655443211 1111111 223469999999999754457999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR 185 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~ 185 (325)
|.+||+|+||||||||+++|.|+ ++|++|+|.+||.|+..++....+. .+++++|+|.+|.+ |..+|+...
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl--~~~~~G~I~IdG~dI~~i~~~~LR~-~i~iVpQdp~LF~g-TIr~NLdp~----- 1383 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRI--NESAEGEIIIDGLNIAKIGLHDLRF-KITIIPQDPVLFSG-SLRMNLDPF----- 1383 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--ccCCCCeEEECCEEccccCHHHHHh-cCeEECCCCcccCc-cHHHHcCcc-----
Confidence 99999999999999999999998 7899999999999999998877553 48899999999987 788886421
Q ss_pred hhcCCCCCChHHHHHhHHHHHHhcCCcc------ccccccC---CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020477 186 RKLGQPEIGPIEFYAYLYPKLERLSMKT------DFLNRNV---NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256 (325)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~---~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~ 256 (325)
+ +.++++.+ ++++..++.. +-++..+ +.+||||||||++|||||+++|+|||||||||+||.
T Consensus 1384 ---~--~~sdeei~----~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~ 1454 (1522)
T TIGR00957 1384 ---S--QYSDEEVW----WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDL 1454 (1522)
T ss_pred ---c--CCCHHHHH----HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 1 12233332 2333333210 1123222 346999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020477 257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319 (325)
Q Consensus 257 ~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~ 319 (325)
++.+.|.+.|++.. +++|||+|+|+++.+.. +|+|+||++|+|++.|+++ ++++++|.
T Consensus 1455 ~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~--~DrIlVld~G~IvE~G~~~--eLl~~~~~ 1512 (1522)
T TIGR00957 1455 ETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMD--YTRVIVLDKGEVAEFGAPS--NLLQQRGI 1512 (1522)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh--CCEEEEEECCEEEEECCHH--HHHhCCCH
Confidence 99999999999875 46899999999988875 6999999999999999875 55666663
No 278
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1e-44 Score=331.13 Aligned_cols=200 Identities=22% Similarity=0.354 Sum_probs=166.3
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~~~------------ 66 (251)
T PRK09544 3 SLVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL--VAPDEGVIKRNGK------------ 66 (251)
T ss_pred cEEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCc------------
Confidence 48999999999964 5799999999999999999999999999999999998 6799999999862
Q ss_pred ccEEEeccCCccCCCc--chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
..++|++|++.+++.+ ++.+++... .... ...+.++++.+++. +..++.+.. |||||||||+
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~----------~~~~----~~~~~~~l~~~gl~-~~~~~~~~~-LSgGq~qrv~ 130 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLR----------PGTK----KEDILPALKRVQAG-HLIDAPMQK-LSGGETQRVL 130 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhcc----------cccc----HHHHHHHHHHcCCh-HHHhCChhh-CCHHHHHHHH
Confidence 2488999998766543 333332110 0111 13356678889985 556677664 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++|||++++..+ ||++++|+ |++++.|+++
T Consensus 131 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~-~d~i~~l~-~~i~~~g~~~ 205 (251)
T PRK09544 131 LARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAK-TDEVLCLN-HHICCSGTPE 205 (251)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEC-CceEeeCCHH
Confidence 999999999999999999999999999999999998765 78999999999999887 69999996 5788888764
No 279
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.1e-44 Score=362.87 Aligned_cols=220 Identities=24% Similarity=0.358 Sum_probs=177.9
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC----------------
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK---------------- 141 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~---------------- 141 (325)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+..++|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999963 57999999999999999999999999999999999973126899999997
Q ss_pred -------CEeCC-------CCCHH--HHhhccEEEeccC-CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHH
Q 020477 142 -------GENLL-------EMEPE--ERSLAGLFMSFQS-PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYP 204 (325)
Q Consensus 142 -------g~~i~-------~~~~~--~~~~~~i~~~~Q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (325)
|.++. ..... ...+..++++||+ +.+++.+++.+++...... .+. ...+...++.+
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----~~~---~~~~~~~~~~~ 151 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE----IGY---EGKEAVGRAVD 151 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH----cCC---CHHHHHHHHHH
Confidence 22221 11111 1112358899997 5677778888887654321 111 12334456788
Q ss_pred HHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCCh
Q 020477 205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYR 283 (325)
Q Consensus 205 ~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~ 283 (325)
+++.+++. +..++.+.+ |||||||||+|||||+.+|++|||||||++||+.++++++++|+++.+ .|.|||+||||+
T Consensus 152 ~l~~~gl~-~~~~~~~~~-LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~ 229 (520)
T TIGR03269 152 LIEMVQLS-HRITHIARD-LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229 (520)
T ss_pred HHHHcCCh-hhhhcCccc-CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 89999995 566777764 999999999999999999999999999999999999999999999965 488999999999
Q ss_pred hHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 284 RLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 284 ~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+++..+ ||++++|++|+++..|+++
T Consensus 230 ~~~~~~-~d~i~~l~~G~i~~~g~~~ 254 (520)
T TIGR03269 230 EVIEDL-SDKAIWLENGEIKEEGTPD 254 (520)
T ss_pred HHHHHh-cCEEEEEeCCEEeeecCHH
Confidence 999887 6999999999999888764
No 280
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-44 Score=329.05 Aligned_cols=221 Identities=18% Similarity=0.216 Sum_probs=177.6
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCCCC
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLLEM 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~~~ 148 (325)
..+.+.+++++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++| ++|+|.++|+++...
T Consensus 5 ~~~~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 5 APIVMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM--NDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred CCceEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--cccccCCCCceEEEECCEecccc
Confidence 3567999999999964 6799999999999999999999999999999999998 444 799999999987542
Q ss_pred CHH-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccc---cccccCCCCC
Q 020477 149 EPE-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD---FLNRNVNEGF 224 (325)
Q Consensus 149 ~~~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~~L 224 (325)
+.. ...+..+++++|++.++ ..++.+++....... .. ..+....+.++++.+++... ..++.+. +|
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~----~~----~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~-~L 150 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLN----RY----KGDLGDRVKHALQGAALWDEVKDKLKVSGL-SL 150 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhc----Cc----hHHHHHHHHHHHHHcCCchhhhhhhhCCcc-cC
Confidence 211 12234589999999877 488888876543211 10 11223456777888887421 2234444 59
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe------
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME------ 298 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~------ 298 (325)
||||+||++|||||+.+|++|||||||+|||+.+++++.++|+++.+ +.|||++|||++++..+ ||++++|+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~-~d~v~~l~~~~~~~ 228 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQQAIRV-ADTTAFFSVDISQG 228 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHh-CCEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999854 68999999999998887 69999996
Q ss_pred --CCEEEEEcCccH
Q 020477 299 --DGRIIKTGDASI 310 (325)
Q Consensus 299 --~G~iv~~g~~~~ 310 (325)
+|++++.|+.+.
T Consensus 229 ~~~G~i~~~g~~~~ 242 (261)
T PRK14263 229 TRTGYLVEMGPTAQ 242 (261)
T ss_pred cCCceEEEeCCHHH
Confidence 899999997653
No 281
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.5e-44 Score=359.82 Aligned_cols=251 Identities=25% Similarity=0.302 Sum_probs=190.4
Q ss_pred hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEE
Q 020477 29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH 108 (325)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~ 108 (325)
..|+..+......++....+.+|+.++++.+++.. ..... .......++++||+|+|++..+++|+|+||+|++||++
T Consensus 274 ~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-~~~~~-~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~ 351 (529)
T TIGR02857 274 YLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-GKAPV-TAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERV 351 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcCC-CCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEE
Confidence 45666666778888899999999998876332111 11111 11122469999999999754457999999999999999
Q ss_pred EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020477 109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL 188 (325)
Q Consensus 109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
+|+||||||||||+|+|+|+ ++|++|+|.++|.++...+....++ .+++++|++.+|++ |..+|+..+.
T Consensus 352 ~ivG~sGsGKSTL~~ll~g~--~~~~~G~I~~~g~~i~~~~~~~lr~-~i~~v~Q~~~lf~~-ti~~Ni~~~~------- 420 (529)
T TIGR02857 352 ALVGPSGAGKSTLLNLLLGF--VDPTEGSIAVNGVPLADADADSWRD-QIAWVPQHPFLFAG-TIAENIRLAR------- 420 (529)
T ss_pred EEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEehhhCCHHHHHh-heEEEcCCCcccCc-CHHHHHhccC-------
Confidence 99999999999999999998 8899999999999999888766543 58999999998875 8888875431
Q ss_pred CCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH
Q 020477 189 GQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263 (325)
Q Consensus 189 ~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~ 263 (325)
+..++++..+ .+.+.++.++.+.+..-...+..||||||||++|||||+++|++||||||||+||+.+++.+.
T Consensus 421 --~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~ 498 (529)
T TIGR02857 421 --PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVT 498 (529)
T ss_pred --CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 1122222211 122334444322122222233469999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 264 ~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
+.|.++. +++|+|+|||+++.+.. +|+|++|
T Consensus 499 ~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l 529 (529)
T TIGR02857 499 EALRALA-QGRTVLLVTHRLALAER--ADRIVVL 529 (529)
T ss_pred HHHHHhc-CCCEEEEEecCHHHHHh--CCEEEeC
Confidence 9999985 46899999999988754 6999875
No 282
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-45 Score=303.95 Aligned_cols=221 Identities=24% Similarity=0.320 Sum_probs=188.2
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC--CCCH-HH-
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL--EMEP-EE- 152 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~--~~~~-~~- 152 (325)
.|+++|+++.|+. ..+|.||+|+.++||.+.++||||+|||||+|.|.-+ ..|.+|+..+.|.... ..+. +.
T Consensus 2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnll--e~p~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLL--EMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHH--hCCCCCeEEecccccccccCccHHHH
Confidence 3789999999974 5799999999999999999999999999999999887 5689999999886543 2221 11
Q ss_pred -HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 153 -RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 153 -~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
.-+..++++||...++|.+++.+|+-.... +..+ ..+.+...++.++++++.+. ++.|+.+-+ |||||+||
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap~---kv~g---l~~~qa~~~a~ellkrlrl~-~~adr~plh-lsggqqqr 149 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPC---RVLG---LSKDQALARAEKLLKRLRLK-PYADRYPLH-LSGGQQQR 149 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhhH---HHhC---CCHHHHHHHHHHHHHHhccc-cccccCcee-cccchhhh
Confidence 123458999999999999999988644321 1122 23456677788899999996 688999876 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|+|||||+.+|++|++||||++|||+-..++.++|+++...|.|-++|||..+.+... +.+++.|++|+|++.|+.++
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~-as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKT-ASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhh-hhheEeeecCeeEeecchhh
Confidence 9999999999999999999999999999999999999998899999999999999987 68999999999999998764
No 283
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.6e-44 Score=319.27 Aligned_cols=198 Identities=24% Similarity=0.293 Sum_probs=165.7
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
|+++||++.|++ +.+|+++||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...... .+.+
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~--~~~~ 74 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL--SPPLAGRVLLNGGPLDFQRDS--IARG 74 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccccHH--hhhh
Confidence 478999999964 5799999999999999999999999999999999998 689999999999987543322 2245
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+++++|++.+++..++.+++..... . . ..+++.++++.+++. +..++.+. .||||||||++||||
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~-------~--~----~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrl~lara 139 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHA-------D--H----SDEQVEEALARVGLN-GFEDRPVA-QLSAGQQRRVALARL 139 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhcc-------c--c----cHHHHHHHHHHcCCh-hhhcCchh-hCCHHHHHHHHHHHH
Confidence 8899999888888888888754311 0 0 123466778889985 45566665 499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
|+.+|++|||||||+|||+.+++.+.+.|+++.++|.|+|++|||....... +++++++
T Consensus 140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~-~~~~~~~ 198 (201)
T cd03231 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEA-GARELDL 198 (201)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhc-cceeEec
Confidence 9999999999999999999999999999999877788999999998877775 6888765
No 284
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.3e-44 Score=328.80 Aligned_cols=217 Identities=18% Similarity=0.276 Sum_probs=171.4
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
....|+++|++++|++..+.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+....
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM--VDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--cCCCCCeEEECCEEhhhCCHHHH
Confidence 4568999999999975335799999999999999999999999999999999998 67999999999999876654433
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH-----HhHHHHHHhc--CCccccccccCCCCCCh
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERL--SMKTDFLNRNVNEGFSG 226 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSg 226 (325)
+ ..++|++|++.+++. ++.+++.... ........ ..+.+.++.+ ++. ...+.... .|||
T Consensus 94 ~-~~i~~v~q~~~l~~~-tv~~nl~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~l~-~~~~~~~~-~LS~ 159 (257)
T cd03288 94 R-SRLSIILQDPILFSG-SIRFNLDPEC----------KCTDDRLWEALEIAQLKNMVKSLPGGLD-AVVTEGGE-NFSV 159 (257)
T ss_pred h-hhEEEECCCCccccc-HHHHhcCcCC----------CCCHHHHHHHHHHhCcHHHHhhcccccC-cEeccCCC-cCCH
Confidence 2 358899999977763 6655542110 00011111 1233344444 443 22344444 5999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++. ++.|||++||+++.+.. ||++++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~--~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILD--ADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHh--CCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 47899999999998874 6999999999999998
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+++
T Consensus 237 ~~~ 239 (257)
T cd03288 237 TPE 239 (257)
T ss_pred CHH
Confidence 765
No 285
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.4e-44 Score=357.81 Aligned_cols=222 Identities=19% Similarity=0.285 Sum_probs=181.8
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++++++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...+.....
T Consensus 255 ~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~--~~p~~G~I~~~g~~i~~~~~~~~~ 325 (501)
T PRK10762 255 EVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA--LPRTSGYVTLDGHEVVTRSPQDGL 325 (501)
T ss_pred CcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHHHH
Confidence 45899999984 379999999999999999999999999999999998 678999999999998765543333
Q ss_pred hccEEEeccCC---ccCCCcchHHHHHHHHHHHhhh-cCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 155 LAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRK-LGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 155 ~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
+.+++|++|++ .+++.+++.+++.......... .+. ....+....+.++++.+++..+..++.+.+ |||||||
T Consensus 326 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGekq 402 (501)
T PRK10762 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGS--LKHADEQQAVSDFIRLFNIKTPSMEQAIGL-LSGGNQQ 402 (501)
T ss_pred HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccc--cCHHHHHHHHHHHHHhcCCCCCCccCchhh-CCHHHHH
Confidence 34689999996 4677788888876532110000 000 112223345778899999943456777765 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+|||||+.+|++|||||||+|||+.+++.+.++|+++.++|.|||++|||++++..+ ||++++|++|+++..|+++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~-~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGM-SDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh-CCEEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999999999999987789999999999999887 6999999999999888765
No 286
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1e-43 Score=357.80 Aligned_cols=254 Identities=21% Similarity=0.236 Sum_probs=192.7
Q ss_pred hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEE
Q 020477 30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHA 109 (325)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~ 109 (325)
.|+..+......++....+.+|+.++...+.++... ..........++++||+|+|++ ++++|+|+||+|++||+++
T Consensus 277 ~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~a 353 (547)
T PRK10522 277 TPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP--RPQAFPDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLF 353 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--cccccCcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEE
Confidence 466677777778888888899988875432221111 1111111236999999999974 3569999999999999999
Q ss_pred EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC
Q 020477 110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG 189 (325)
Q Consensus 110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (325)
|+||||||||||+++|+|+ ++|++|+|.++|+++...+....+ ..+++++|++.+|++ +..++ +
T Consensus 354 ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~~-~~i~~v~q~~~lf~~-ti~~n------------~ 417 (547)
T PRK10522 354 LIGGNGSGKSTLAMLLTGL--YQPQSGEILLDGKPVTAEQPEDYR-KLFSAVFTDFHLFDQ-LLGPE------------G 417 (547)
T ss_pred EECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEECCCCCHHHHh-hheEEEecChhHHHH-hhccc------------c
Confidence 9999999999999999998 789999999999999887766544 358899999987654 21111 0
Q ss_pred CCCCChHHHHHhHHHHHHhcCCccccc--ccc-CCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH
Q 020477 190 QPEIGPIEFYAYLYPKLERLSMKTDFL--NRN-VNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV 266 (325)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~-~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L 266 (325)
... ..+.+.+.++.+++..... +.. -+.+||||||||++|||||+++|++|||||||++||+++++.+.+.|
T Consensus 418 -~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l 492 (547)
T PRK10522 418 -KPA----NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL 492 (547)
T ss_pred -Cch----HHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 011 1123556677777753221 111 13469999999999999999999999999999999999999999998
Q ss_pred Hhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 267 NGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 267 ~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
.+.. +.++|+|+|||+++.+.. +|+|++|++|++++....+
T Consensus 493 ~~~~~~~~~tvi~itH~~~~~~~--~d~i~~l~~G~i~e~~~~~ 534 (547)
T PRK10522 493 LPLLQEMGKTIFAISHDDHYFIH--ADRLLEMRNGQLSELTGEE 534 (547)
T ss_pred HHHHHhCCCEEEEEEechHHHHh--CCEEEEEECCEEEEecCCc
Confidence 7654 347899999999987653 6999999999999875433
No 287
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8e-44 Score=391.47 Aligned_cols=230 Identities=20% Similarity=0.242 Sum_probs=193.8
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
..+|+++||+++|++..+.+|+|+||+|++||++||+||||||||||+|+|+|+ .+|++|+|.++|+++... ... .
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl--l~ptsG~I~i~G~~i~~~-~~~-~ 2010 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD--TTVTSGDATVAGKSILTN-ISD-V 2010 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECCEECcch-HHH-H
Confidence 458999999999974336799999999999999999999999999999999998 679999999999998542 222 2
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..+++++|++.+++.+|+.+++...... .+. ..++....+.++++.+++. +..++.+.+ |||||||||+|
T Consensus 2011 r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l----~g~---~~~~~~~~v~~lLe~lgL~-~~~dk~~~~-LSGGqKqRLsl 2081 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDDLLTGREHLYLYARL----RGV---PAEEIEKVANWSIQSLGLS-LYADRLAGT-YSGGNKRKLST 2081 (2272)
T ss_pred hhhEEEEeccccCCCCCCHHHHHHHHHHh----cCC---CHHHHHHHHHHHHHHcCCH-HHhcCChhh-CCHHHHHHHHH
Confidence 34589999999999999999988764322 111 1233345567789999996 567888775 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVL 314 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~ 314 (325)
|+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||++++++.+ |||+++|++|++++.|++++.+..
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~l-cDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEAL-CTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999999977789999999999999988 699999999999999998765433
Q ss_pred HhCC
Q 020477 315 EEGG 318 (325)
Q Consensus 315 ~~~~ 318 (325)
...|
T Consensus 2161 ~g~g 2164 (2272)
T TIGR01257 2161 FGDG 2164 (2272)
T ss_pred hCCc
Confidence 3333
No 288
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=357.36 Aligned_cols=224 Identities=21% Similarity=0.272 Sum_probs=181.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.+.++++|+++ +.+++|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++.........
T Consensus 255 ~~~l~~~~~~~------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 255 EVRLRLDGLKG------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA--TRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred CcEEEEecccc------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC--CcCCCceEEECCEECCCCCHHHHH
Confidence 34799999983 2489999999999999999999999999999999998 678999999999988654443333
Q ss_pred hccEEEeccCCc---cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 155 LAGLFMSFQSPV---EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 155 ~~~i~~~~Q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
+.+++|++|++. +++..++.+++...........+.. .........+.++++.+++..+..++++.. ||||||||
T Consensus 327 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~qr 404 (501)
T PRK11288 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCL-INNRWEAENADRFIRSLNIKTPSREQLIMN-LSGGNQQK 404 (501)
T ss_pred hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccc-cChHHHHHHHHHHHHhcCcccCCccCcccc-CCHHHHHH
Confidence 456889999973 7777888888754321110000000 011222345678899999853457777775 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+|||||+.+|++|||||||+|||+.+++.++++|.+++++|.|||+||||++++..+ ||++++|++|++++.|+.+
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~-~d~i~~l~~g~i~~~~~~~ 481 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGV-ADRIVVMREGRIAGELARE 481 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhh-CCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999999987789999999999999987 6999999999999998765
No 289
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.3e-43 Score=357.48 Aligned_cols=255 Identities=18% Similarity=0.208 Sum_probs=193.2
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCC---CCCC-----CCCCCCCcEEEEEEEEEECCC---ccccee
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKS---SSDG-----QDEKSQPLLQVTGLTAVIAES---KQEILK 96 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~---~~~~-----~~~~~~~~l~~~~ls~~y~~~---~~~iL~ 96 (325)
+..|+..+......++.+..+.+|+.++++.++.+... .... ........++++||+|+|++. .+++|+
T Consensus 280 l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~ 359 (555)
T TIGR01194 280 IKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALG 359 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceec
Confidence 45678888888889999999999999987533222111 0000 000123469999999999742 235999
Q ss_pred eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHH
Q 020477 97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDF 176 (325)
Q Consensus 97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~ 176 (325)
|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+....+. .+++++|++.+|.+. ..++
T Consensus 360 ~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~p~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~lf~~t-i~~n 435 (555)
T TIGR01194 360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL--YIPQEGEILLDGAAVSADSRDDYRD-LFSAIFADFHLFDDL-IGPD 435 (555)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHHHh-hCcEEccChhhhhhh-hhcc
Confidence 99999999999999999999999999999998 7899999999999998887665443 478899999877542 2222
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC-----CCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020477 177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV-----NEGFSGGERKRNEILQLAVLGADLAILDEID 251 (325)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt 251 (325)
. .+.. ..+.+.++++.+++.. +..+.+ ...||||||||++||||++.+|++|||||||
T Consensus 436 ~------------~~~~----~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~t 498 (555)
T TIGR01194 436 E------------GEHA----SLDNAQQYLQRLEIAD-KVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWA 498 (555)
T ss_pred c------------ccch----hHHHHHHHHHHcCCch-hhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1 0111 1233556677777752 222111 1359999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHH-hccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 252 SGLDVDALRDVAKAVN-GLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 252 sgLD~~~~~~i~~~L~-~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
++||+++++.+.+.+. .+..+++|+|+|||+++.+. . +|+|++|++|++++.
T Consensus 499 s~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~-~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 499 ADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-L-ADQIIKLAAGCIVKD 551 (555)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-h-CCEEEEEECCEEEEe
Confidence 9999999999988654 45455789999999998765 3 799999999999865
No 290
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.7e-44 Score=317.65 Aligned_cols=198 Identities=21% Similarity=0.274 Sum_probs=163.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++.. .. .+.
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~--~~--~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL--LPPAAGTIKLDGGDIDD--PD--VAE 73 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEeCcc--hh--hHh
Confidence 6899999999964 5799999999999999999999999999999999998 67899999999988642 11 223
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.+++++|++.+++..++.+++...... .+. . ...+.++++.+++. +..++.+. .||||||||++|||
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~----~~~---~----~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrl~la~ 140 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAF----LGG---E----ELDIAAALEAVGLA-PLAHLPFG-YLSAGQKRRVALAR 140 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHh----cCC---c----HHHHHHHHHHcCCH-HHHcCChh-hcCHHHHHHHHHHH
Confidence 467888888777778888887543211 111 1 12366788999996 45566665 49999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++.. |+++.++
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~ 199 (207)
T PRK13539 141 LLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLG 199 (207)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeec
Confidence 9999999999999999999999999999999987678999999999988764 6776663
No 291
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.3e-44 Score=315.05 Aligned_cols=197 Identities=24% Similarity=0.314 Sum_probs=161.8
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...... . ...
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~-~-~~~ 74 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL--LRPDSGEVRWNGTALAEQRDE-P-HRN 74 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEEcccchHH-h-hhh
Confidence 578999999964 6799999999999999999999999999999999998 689999999999988654322 2 235
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++|++.+++..++.+++...... .. .. ...+.++++.+++. +..++.+.. ||||||||++||||
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~----~~-----~~--~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~a 141 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAI----HG-----GA--QRTIEDALAAVGLT-GFEDLPAAQ-LSAGQQRRLALARL 141 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHH----cC-----Cc--HHHHHHHHHHcCCH-HHhcCChhh-cCHHHHHHHHHHHH
Confidence 78899998888888988887653211 11 01 13456778889986 456777764 99999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEE
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI 296 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~v 296 (325)
|+.+|++|||||||+|||+.+++.+.+.|.+++++|.|||++||+...+ . +++++.
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~-~~~~~~ 197 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--V-EARELR 197 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--c-ceEEee
Confidence 9999999999999999999999999999999876788999999987433 2 466543
No 292
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.6e-44 Score=315.99 Aligned_cols=192 Identities=19% Similarity=0.229 Sum_probs=161.1
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
||+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++... .... +.
T Consensus 1 ml~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~v~~~g~~~~~~-~~~~-~~ 74 (200)
T PRK13540 1 MLDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL--LNPEKGEILFERQSIKKD-LCTY-QK 74 (200)
T ss_pred CEEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeeEEECCCccccC-HHHH-Hh
Confidence 5899999999964 5799999999999999999999999999999999998 679999999999987542 2222 23
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|++|++.+++..++.+++...... . . . ...+.++++.+++. +..++.+. .|||||+||++|||
T Consensus 75 ~i~~~~q~~~~~~~~tv~~~~~~~~~~-----~-~---~---~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~~rv~lar 140 (200)
T PRK13540 75 QLCFVGHRSGINPYLTLRENCLYDIHF-----S-P---G---AVGITELCRLFSLE-HLIDYPCG-LLSSGQKRQVALLR 140 (200)
T ss_pred heEEeccccccCcCCCHHHHHHHHHhc-----C-c---c---hHHHHHHHHHcCCc-hhhhCChh-hcCHHHHHHHHHHH
Confidence 588999998888888998887643210 0 0 0 12466788888885 45566665 49999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF 288 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~ 288 (325)
||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++||+..++..
T Consensus 141 al~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 141 LWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 9999999999999999999999999999999987668899999999988866
No 293
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=8.8e-44 Score=339.76 Aligned_cols=263 Identities=25% Similarity=0.282 Sum_probs=216.6
Q ss_pred hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEE
Q 020477 30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHA 109 (325)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~ 109 (325)
-|+-.....|..|-.++.+.+|+...+...+.... .-+.+.+...|.++++++.=++..+++++++||++.+||.+|
T Consensus 290 aPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lg 366 (580)
T COG4618 290 APIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALG 366 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEE
Confidence 45556666777888899999999998875544322 122334566899999999777777899999999999999999
Q ss_pred EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC
Q 020477 110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG 189 (325)
Q Consensus 110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (325)
||||||||||||.|+|.|. ++|.+|.|++||-++..++.+..-+ +|+|.||+-.+|++ |+.+|+...-
T Consensus 367 IIGPSgSGKSTLaR~lvG~--w~p~~G~VRLDga~l~qWd~e~lG~-hiGYLPQdVeLF~G-TIaeNIaRf~-------- 434 (580)
T COG4618 367 IIGPSGSGKSTLARLLVGI--WPPTSGSVRLDGADLRQWDREQLGR-HIGYLPQDVELFDG-TIAENIARFG-------- 434 (580)
T ss_pred EECCCCccHHHHHHHHHcc--cccCCCcEEecchhhhcCCHHHhcc-ccCcCcccceecCC-cHHHHHHhcc--------
Confidence 9999999999999999998 8899999999999999998876554 58999999999987 6777764431
Q ss_pred CCCCChHH-----HHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH
Q 020477 190 QPEIGPIE-----FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK 264 (325)
Q Consensus 190 ~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~ 264 (325)
.+.+.+. ..+.+++.+-++..+++..-..-+..||||||||++|||||..+|.+++||||-|+||.+.++.+.+
T Consensus 435 -~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~ 513 (580)
T COG4618 435 -EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA 513 (580)
T ss_pred -ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH
Confidence 1112222 2244677777887765555455556799999999999999999999999999999999999999999
Q ss_pred HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 265 AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 265 ~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
.|.+.+++|.|+|+|||.+..+.. +|+|++|++|++...|+.++
T Consensus 514 Ai~~~k~rG~~vvviaHRPs~L~~--~Dkilvl~~G~~~~FG~r~e 557 (580)
T COG4618 514 AILAAKARGGTVVVIAHRPSALAS--VDKILVLQDGRIAAFGPREE 557 (580)
T ss_pred HHHHHHHcCCEEEEEecCHHHHhh--cceeeeecCChHHhcCCHHH
Confidence 999999899999999999988765 59999999999999998764
No 294
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-44 Score=307.13 Aligned_cols=171 Identities=27% Similarity=0.422 Sum_probs=145.6
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++....+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+...++ ..
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~~ 77 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL--YDPTSGEILIDGVDLRDLDLESLR-KN 77 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCCEEEECCEEhhhcCHHHHH-hh
Confidence 478999999975223699999999999999999999999999999999998 678999999999988665544332 35
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++++||++.+++ .++.++ + |||||||||+||||
T Consensus 78 i~~~~~~~~~~~-~t~~e~-----------------------------l-----------------LS~G~~~rl~la~a 110 (171)
T cd03228 78 IAYVPQDPFLFS-GTIREN-----------------------------I-----------------LSGGQRQRIAIARA 110 (171)
T ss_pred EEEEcCCchhcc-chHHHH-----------------------------h-----------------hCHHHHHHHHHHHH
Confidence 788899875433 122111 0 89999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
|+.+|++|||||||+|||+.+++.+.++|+++.+ ++|||++|||++++.. ||++++|++|+
T Consensus 111 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~~~~l~~g~ 171 (171)
T cd03228 111 LLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRD--ADRIIVLDDGR 171 (171)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHh--CCEEEEEcCCC
Confidence 9999999999999999999999999999999864 6899999999999864 69999999884
No 295
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.1e-44 Score=356.11 Aligned_cols=221 Identities=21% Similarity=0.293 Sum_probs=180.5
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++|+++|+++ .+|+++||+|++||++||+||||||||||+|+|+|+ .+|++|+|.++|+++...+....
T Consensus 265 ~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 335 (510)
T PRK15439 265 GAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL--RPARGGRIMLNGKEINALSTAQR 335 (510)
T ss_pred CCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCcEEEECCEECCCCCHHHH
Confidence 345899999983 269999999999999999999999999999999998 67899999999999876655443
Q ss_pred hhccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 154 SLAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 154 ~~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
.+.+++|++|++ .+++.+++.+++........ .... ........+.++++.+++..+..++++.+ |||||||
T Consensus 336 ~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~-~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgG~kq 410 (510)
T PRK15439 336 LARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRR-GFWI---KPARENAVLERYRRALNIKFNHAEQAART-LSGGNQQ 410 (510)
T ss_pred HhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhh-cccc---ChHHHHHHHHHHHHHcCCCCCCccCcccc-CCcHHHH
Confidence 345689999985 36777788777643211000 0000 11122345678899999953456777765 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+|||||+.+|+||||||||+|||+.+++.+.++|++++++|.|||+||||++++..+ ||++++|++|+++..|+++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~-~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQM-ADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999999987789999999999999987 6999999999999988765
No 296
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-44 Score=355.07 Aligned_cols=225 Identities=18% Similarity=0.255 Sum_probs=179.2
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++|+++.| +.+|+++||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...+.....
T Consensus 248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~ 321 (491)
T PRK10982 248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI--REKSAGTITLHGKKINNHNANEAI 321 (491)
T ss_pred CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC--CcCCccEEEECCEECCCCCHHHHH
Confidence 4589999999874 3599999999999999999999999999999999998 678999999999998766554443
Q ss_pred hccEEEeccCCc---cCCCcchHHHHHHHH-HHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 155 LAGLFMSFQSPV---EIPGVNNIDFLHMAY-NARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 155 ~~~i~~~~Q~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
+.+++|++|++. +++.++..++..... .......+. .........+.+.++.+++..+..++.+.+ |||||||
T Consensus 322 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~q 398 (491)
T PRK10982 322 NHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGL--LDNSRMKSDTQWVIDSMRVKTPGHRTQIGS-LSGGNQQ 398 (491)
T ss_pred HCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccc--cCcHHHHHHHHHHHHhcCccCCCccccccc-CCcHHHH
Confidence 456889999853 566666554421110 000000010 011223345677888888853456777765 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+|||||+.+|+||||||||+|||+.+++.++++|+++.++|.|||++|||++++..+ ||++++|++|+++..++..
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~-~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGI-TDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhh-CCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999999987789999999999999887 7999999999999777553
No 297
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.2e-43 Score=388.07 Aligned_cols=230 Identities=21% Similarity=0.275 Sum_probs=192.9
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.+.|+++||++.|+++++.+|+|+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++... ... .
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL--l~PtsG~I~i~G~dI~~~-~~~-~ 1001 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL--LPPTSGTVLVGGKDIETN-LDA-V 1001 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC--CCCCceEEEECCEECcch-HHH-H
Confidence 458999999999964346799999999999999999999999999999999998 679999999999998642 222 2
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..+++++|++.+++.+|+.+++.+..... +. ...+..+++.+.++.+++. +..++.+.+ |||||||||+|
T Consensus 1002 r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk----g~---~~~~~~~~v~~lL~~vgL~-~~~~~~~~~-LSGGqKQRLsL 1072 (2272)
T TIGR01257 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQLK----GR---SWEEAQLEMEAMLEDTGLH-HKRNEEAQD-LSGGMQRKLSV 1072 (2272)
T ss_pred hhcEEEEecCCcCCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHH
Confidence 345889999999999999999987643221 11 1233345678889999996 567777765 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVL 314 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~ 314 (325)
||||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+ ||||++|++|++++.|++...+..
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~l-aDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLL-GDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999995 588999999999999887 699999999999999988755433
Q ss_pred HhCCe
Q 020477 315 EEGGY 319 (325)
Q Consensus 315 ~~~~~ 319 (325)
...||
T Consensus 1151 ~g~gy 1155 (2272)
T TIGR01257 1151 FGTGF 1155 (2272)
T ss_pred cCCcE
Confidence 33344
No 298
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.3e-43 Score=385.87 Aligned_cols=263 Identities=19% Similarity=0.228 Sum_probs=200.6
Q ss_pred hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCC-CC------------------------CCCCC-----CCCCCCcEE
Q 020477 30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPL-KS------------------------SSDGQ-----DEKSQPLLQ 79 (325)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~------------------------~~~~~-----~~~~~~~l~ 79 (325)
.|+..+......++....+.+|+.+..+..+... .. ....+ .......|+
T Consensus 1231 ~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~ 1310 (1560)
T PTZ00243 1231 ATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLV 1310 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEE
Confidence 3444445556778888899999988875322110 00 00000 001123699
Q ss_pred EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEE
Q 020477 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF 159 (325)
Q Consensus 80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 159 (325)
++||+++|+++...+|+|+||+|++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.++..++....++ .++
T Consensus 1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl--~~p~~G~I~IDG~di~~i~l~~LR~-~I~ 1387 (1560)
T PTZ00243 1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM--VEVCGGEIRVNGREIGAYGLRELRR-QFS 1387 (1560)
T ss_pred EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEcccCCHHHHHh-cce
Confidence 9999999976445699999999999999999999999999999999998 7899999999999999988776554 589
Q ss_pred EeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc------ccccccC---CCCCChHHHH
Q 020477 160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT------DFLNRNV---NEGFSGGERK 230 (325)
Q Consensus 160 ~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~---~~~LSgGqrQ 230 (325)
++||+|.+|.+ |+.+|+... .+.++++ +.++++..++.. +.++..+ +.+|||||||
T Consensus 1388 iVpQdp~LF~g-TIreNIdp~----------~~~sdee----I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQ 1452 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNVDPF----------LEASSAE----VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQ 1452 (1560)
T ss_pred EECCCCccccc-cHHHHhCcc----------cCCCHHH----HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHH
Confidence 99999999986 888887421 1122333 333444444421 1123222 3469999999
Q ss_pred HHHHHHHHHhC-CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLG-ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~-p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|++|||||+++ |+|||||||||+||+++.+.|.+.|++..+ ++|||+|+|+++.+.. +|+|+||++|+|++.|+++
T Consensus 1453 rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl~ti~~--~DrIlVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRLHTVAQ--YDKIIVMDHGAVAEMGSPR 1529 (1560)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccHHHHHh--CCEEEEEECCEEEEECCHH
Confidence 99999999996 899999999999999999999999998753 6899999999988875 6999999999999999875
Q ss_pred HHHHHH
Q 020477 310 IATVLE 315 (325)
Q Consensus 310 ~~~~~~ 315 (325)
++++
T Consensus 1530 --eLl~ 1533 (1560)
T PTZ00243 1530 --ELVM 1533 (1560)
T ss_pred --HHHh
Confidence 4554
No 299
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-43 Score=321.00 Aligned_cols=208 Identities=21% Similarity=0.251 Sum_probs=169.1
Q ss_pred CcEEEEEEEEEECC------------------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccE
Q 020477 76 PLLQVTGLTAVIAE------------------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137 (325)
Q Consensus 76 ~~l~~~~ls~~y~~------------------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~ 137 (325)
..++++||++.|.. ..+++|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl--~~p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS--LSPTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceE
Confidence 35889999988843 123589999999999999999999999999999999998 6799999
Q ss_pred EEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcccccc
Q 020477 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN 217 (325)
Q Consensus 138 I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 217 (325)
|.++|.. .+++|++.+.+.+++.+++...... .+ ....+....+..+++.+++. +..+
T Consensus 81 I~~~g~~--------------~~~~~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~ 138 (264)
T PRK13546 81 VDRNGEV--------------SVIAISAGLSGQLTGIENIEFKMLC----MG---FKRKEIKAMTPKIIEFSELG-EFIY 138 (264)
T ss_pred EEECCEE--------------eEEecccCCCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhc
Confidence 9999851 2334665555667887776543211 11 11233334455677778885 4566
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 218 RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 218 ~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
+.+.. |||||+|||+|||||+.+|++|||||||+|||+.+++.+++.|.+++++|.|||++|||++++..+ ||++++|
T Consensus 139 ~~~~~-LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~-~d~i~~l 216 (264)
T PRK13546 139 QPVKK-YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQF-CTKIAWI 216 (264)
T ss_pred CCccc-CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-cCEEEEE
Confidence 77664 999999999999999999999999999999999999999999999876788999999999998877 6999999
Q ss_pred eCCEEEEEcCcc
Q 020477 298 EDGRIIKTGDAS 309 (325)
Q Consensus 298 ~~G~iv~~g~~~ 309 (325)
++|++++.|+.+
T Consensus 217 ~~G~i~~~g~~~ 228 (264)
T PRK13546 217 EGGKLKDYGELD 228 (264)
T ss_pred ECCEEEEeCCHH
Confidence 999999998865
No 300
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.6e-43 Score=351.97 Aligned_cols=226 Identities=19% Similarity=0.165 Sum_probs=173.0
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-CccEEEECCEeCCCCCHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-TEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-~~G~I~~~g~~i~~~~~~~ 152 (325)
..++|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ .++ ++|+|.++|+++.......
T Consensus 257 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~--~~~~~~G~i~~~g~~~~~~~~~~ 332 (490)
T PRK10938 257 NEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD--HPQGYSNDLTLFGRRRGSGETIW 332 (490)
T ss_pred CCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCcccCCeEEEecccCCCCCCHH
Confidence 4568999999999964 5699999999999999999999999999999999997 444 6999999998753211111
Q ss_pred HhhccEEEeccCCccCCC--cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
..+..+++++|++.++.. .++.+++...+... .........+....+.++++.+++..+..++.+.+ |||||||
T Consensus 333 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~q 408 (490)
T PRK10938 333 DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS---IGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHS-LSWGQQR 408 (490)
T ss_pred HHHhhceEECHHHHhhcccCCcHHHHHHhccccc---cccccCCCHHHHHHHHHHHHHcCCchhhccCchhh-CCHHHHH
Confidence 112358899998755432 34444432221100 00000011222345778899999963256777765 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC-cEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK-NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||+|||||+.+|++|||||||+|||+.+++.+.++|+++++++ .|||+||||++++...+||++++|++|++++...
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 9999999999999999999999999999999999999997665 4799999999999764479999999999987643
No 301
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.6e-43 Score=308.61 Aligned_cols=184 Identities=27% Similarity=0.346 Sum_probs=148.2
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH-HHHhhccEEEeccCCc-cC
Q 020477 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP-EERSLAGLFMSFQSPV-EI 168 (325)
Q Consensus 91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~-~~~~~~~i~~~~Q~~~-~~ 168 (325)
++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++..... ....+..+++++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL--LRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 35799999999999999999999999999999999998 67999999999998752111 1112245889999973 22
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEe
Q 020477 169 PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILD 248 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLD 248 (325)
...++.+++.+.... .+ ....+...++.++++.+++. +..++.+.+ ||||||||++|||||+.+|++||||
T Consensus 82 ~~~tv~~nl~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 FAADVDQDVAFGPLN----LG---LSEAEVERRVREALTAVGAS-GLRERPTHC-LSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCch-hhhhCChhh-CCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 346888887653211 11 12233345577788999996 566777764 9999999999999999999999999
Q ss_pred CcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020477 249 EIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL 285 (325)
Q Consensus 249 EPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~ 285 (325)
|||+|||+.+++.+.++|++++++|.|||++|||+++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999999999997678899999999865
No 302
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.6e-43 Score=311.91 Aligned_cols=194 Identities=27% Similarity=0.351 Sum_probs=151.7
Q ss_pred EEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 78 LQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 78 l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
++++||+++|++.. +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~--~~~~~G~i~~~g------------ 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE--LEKLSGSVSVPG------------ 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc--CCCCCCeEEEcC------------
Confidence 47899999997532 3699999999999999999999999999999999998 689999999998
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHHHhcCCc-cccccccCCCCCChHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKLERLSMK-TDFLNRNVNEGFSGGE 228 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~~LSgGq 228 (325)
.++|++|++.+++ .++.+++..... ........ .+.+.+..+... ....++... .|||||
T Consensus 67 --~i~~~~q~~~l~~-~t~~enl~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~lS~G~ 132 (204)
T cd03250 67 --SIAYVSQEPWIQN-GTIRENILFGKP----------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGI-NLSGGQ 132 (204)
T ss_pred --EEEEEecCchhcc-CcHHHHhccCCC----------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCC-cCCHHH
Confidence 3788999998774 588887654211 00111111 112223332211 112334444 599999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH-HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK-AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
|||++|||||+.+|+++||||||++||+.+++.+.+ +++++.++|.|||++||+++.+.. +|++++|++|+
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~--~d~i~~l~~G~ 204 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH--ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh--CCEEEEEeCCC
Confidence 999999999999999999999999999999999998 566676668899999999998875 69999999885
No 303
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-43 Score=311.85 Aligned_cols=226 Identities=26% Similarity=0.289 Sum_probs=180.4
Q ss_pred CCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH
Q 020477 71 DEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 71 ~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 150 (325)
.....++|+++|++++|+ ++++|+|+|++|++||.++|+||||||||||+++++|. +.|++|.+.+.|+.....+.
T Consensus 25 ~~~~~~li~l~~v~v~r~--gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~--~~pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 25 IEINEPLIELKNVSVRRN--GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--HPPSSGDVTLLGRRFGKGET 100 (257)
T ss_pred CCCCcceEEecceEEEEC--CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc--cCCCCCceeeeeeeccCCcc
Confidence 334567899999999996 48899999999999999999999999999999999997 67889999999998866544
Q ss_pred -HHHhhccEEEecc--CCccCCCcchHHHHHHHHHHHhhhcCCCC-CChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020477 151 -EERSLAGLFMSFQ--SPVEIPGVNNIDFLHMAYNARRRKLGQPE-IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG 226 (325)
Q Consensus 151 -~~~~~~~i~~~~Q--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 226 (325)
.+.++ .|++|.- +..+....++.+.+..++... .+.+. ...++..+++..+++.+++. ++.++.... ||-
T Consensus 101 ~~elrk-~IG~vS~~L~~~~~~~~~v~dvVlSg~~~s---iG~y~~~~~~~~~~~a~~lle~~g~~-~la~r~~~~-LS~ 174 (257)
T COG1119 101 IFELRK-RIGLVSSELHERFRVRETVRDVVLSGFFAS---IGIYQEDLTAEDLAAAQWLLELLGAK-HLADRPFGS-LSQ 174 (257)
T ss_pred hHHHHH-HhCccCHHHHhhcccccccceeeeeccccc---ccccccCCCHHHHHHHHHHHHHcchh-hhccCchhh-cCH
Confidence 33222 3455432 222223345555555444321 22222 22345567788899999996 578888765 999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC--CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP--KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
||||||.|||||+.+|++|||||||+|||...++.+.+.|.++... +.++|+|||..+++... .++++.+++|+++.
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~-~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC-FTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccc-cceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999754 67999999999998875 68999999999998
Q ss_pred EcC
Q 020477 305 TGD 307 (325)
Q Consensus 305 ~g~ 307 (325)
.|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 773
No 304
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.8e-44 Score=304.60 Aligned_cols=227 Identities=23% Similarity=0.363 Sum_probs=197.0
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC-EeCCCCCHHHHh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG-ENLLEMEPEERS 154 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g-~~i~~~~~~~~~ 154 (325)
++|+++||+++|++ ..+|+++||+|.+||.-+|||||||||||++.+|+|- -+|+.|+|+++| .++..++..+..
T Consensus 4 ~iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK--trp~~G~v~f~g~~dl~~~~e~~IA 79 (249)
T COG4674 4 IILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK--TRPQEGEVLFDGDTDLTKLPEHRIA 79 (249)
T ss_pred ceEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc--CCCCcceEEEcCchhhccCCHHHHH
Confidence 58999999999964 7899999999999999999999999999999999996 689999999999 999999988888
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCC--CCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ--PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
+.+|+--||.|..|..+++.+|+....+.....+.. ... ..+...++++.|+..++. +..++..+ .||.||||++
T Consensus 80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~-~~~e~~ride~La~igL~-~~~~~~A~-~LSHGqKQwL 156 (249)
T COG4674 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL-RAEERRRIDELLATIGLG-DERDRLAA-LLSHGQKQWL 156 (249)
T ss_pred HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhc-ChhHHHHHHHHHHHcccc-hhhhhhhh-hhccchhhhh
Confidence 889999999999999999999998875432111100 011 223346789999999997 45666665 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA 311 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~ 311 (325)
.|++.++++|++|+||||++|+-.+......++|+.++. +.+|++|.||++++..+ +++|-||+.|.+.++|+.++.
T Consensus 157 EIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~-A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREI-ADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred hhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHh-hheeEEEeccceeecccHHHh
Confidence 999999999999999999999999999999999999974 47999999999999998 699999999999999987643
No 305
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.7e-43 Score=327.39 Aligned_cols=228 Identities=26% Similarity=0.362 Sum_probs=186.2
Q ss_pred CCCcEEEEEEEEEECC--CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCC
Q 020477 74 SQPLLQVTGLTAVIAE--SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEM 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~--~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~ 148 (325)
..++|+++||++.|.. +...++++|||+|++||.+||||+||||||-..+.++|++.+++ -+|+|.|+|+++...
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 3578999999999952 34679999999999999999999999999999999999854322 379999999999988
Q ss_pred CHHHHhh---ccEEEeccCCcc--CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCC
Q 020477 149 EPEERSL---AGLFMSFQSPVE--IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVN 221 (325)
Q Consensus 149 ~~~~~~~---~~i~~~~Q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~ 221 (325)
+..+++. ..|+|+||+|.. .|-.+...-+.-..... ......+.++++.++|+.+|+.. ..++.+++
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H------rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH 156 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH------RGLSRAAARARALELLELVGIPEPEKRLDAYPH 156 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH------hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc
Confidence 8766543 259999999952 23233322222222211 12334566788899999999953 34556666
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
+ |||||||||.||+||+.+|++||.||||.+||...+.+|+++|+++.++ |+++++||||+..+..+ +|||+||.+|
T Consensus 157 e-LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~-ADrV~VM~~G 234 (534)
T COG4172 157 E-LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKF-ADRVYVMQHG 234 (534)
T ss_pred c-cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHh-hhhEEEEecc
Confidence 4 9999999999999999999999999999999999999999999999865 99999999999999998 7999999999
Q ss_pred EEEEEcCcc
Q 020477 301 RIIKTGDAS 309 (325)
Q Consensus 301 ~iv~~g~~~ 309 (325)
++++.|..+
T Consensus 235 ~ivE~~~t~ 243 (534)
T COG4172 235 EIVETGTTE 243 (534)
T ss_pred EEeecCcHH
Confidence 999999754
No 306
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=340.11 Aligned_cols=210 Identities=21% Similarity=0.284 Sum_probs=171.6
Q ss_pred CCCcEEEEEEEEEECCCc-ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 74 SQPLLQVTGLTAVIAESK-QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~-~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
..++++++||++.|+++. +.+|+|+||+|++|+++||+||||||||||+++|+|+ .+|++|+|.++|.+..
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL--l~P~sGeI~I~G~~~~------ 89 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV--TMPNKGTVDIKGSAAL------ 89 (549)
T ss_pred ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCceEEEECCEeee------
Confidence 346899999999997532 4699999999999999999999999999999999998 6799999999997520
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
+. +.+.+++.+++.+++.+.... .+ ....+....+.++++.+++. +..++.+.. ||||||||+
T Consensus 90 -----i~---~~~~l~~~lTV~EnL~l~~~~----~~---~~~~e~~e~i~elLe~lgL~-~~ld~~~~~-LSGGQrQRV 152 (549)
T PRK13545 90 -----IA---ISSGLNGQLTGIENIELKGLM----MG---LTKEKIKEIIPEIIEFADIG-KFIYQPVKT-YSSGMKSRL 152 (549)
T ss_pred -----EE---eccccCCCCcHHHHHHhhhhh----cC---CCHHHHHHHHHHHHHHcCCh-hHhhCCccc-CCHHHHHHH
Confidence 11 223344556888876543211 01 11233344566788889985 556777764 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|||||+.+|++|||||||+|||+.+++.+++.|++++++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l-~DrIivL~~GkIv~~G~~~ 228 (549)
T PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSF-CTKALWLHYGQVKEYGDIK 228 (549)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999876788999999999999887 6999999999999999765
No 307
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1e-42 Score=311.20 Aligned_cols=202 Identities=22% Similarity=0.287 Sum_probs=156.7
Q ss_pred EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH---HHhh
Q 020477 79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE---ERSL 155 (325)
Q Consensus 79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~---~~~~ 155 (325)
.+.|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.. ...+
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE--MQTLEGKVHWSNKNESEPSFEATRSRNR 78 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCCeEEECCcccccccccccchhhc
Confidence 578999999753 6799999999999999999999999999999999998 678999999999987554321 1223
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc----------ccccccCCCCCC
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT----------DFLNRNVNEGFS 225 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS 225 (325)
.+++|++|++.++ ..++.+++..... ....+ ..+.++.+++.. ...++.+. .||
T Consensus 79 ~~i~~~~q~~~~~-~~t~~~nl~~~~~----------~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~LS 142 (218)
T cd03290 79 YSVAYAAQKPWLL-NATVEENITFGSP----------FNKQR----YKAVTDACSLQPDIDLLPFGDQTEIGERGI-NLS 142 (218)
T ss_pred ceEEEEcCCCccc-cccHHHHHhhcCc----------CCHHH----HHHHHHHhCcHHHHHhCcCccccCcccCCC-cCC
Confidence 4688999999877 4677777654310 01111 112233333321 11234444 599
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH--HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK--AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
|||||||+|||||+.+|++|||||||++||+.+++.+++ +++.+.+.|.|||++||+++.+. . +|++++|++|.
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~-~d~i~~l~~G~ 218 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-H-ADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-h-CCEEEEecCCC
Confidence 999999999999999999999999999999999999998 67766666889999999999875 4 69999998873
No 308
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-43 Score=332.59 Aligned_cols=263 Identities=19% Similarity=0.344 Sum_probs=202.2
Q ss_pred hhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCC
Q 020477 36 LCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNG 115 (325)
Q Consensus 36 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NG 115 (325)
..+....|......+++.++++..++..+.++..+-.....-++++||+|.|.. ++++|+||||++.+|+.+||+||||
T Consensus 496 GT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p-~k~vl~disF~v~pGktvAlVG~SG 574 (790)
T KOG0056|consen 496 GTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP-GKPVLSDISFTVQPGKTVALVGPSG 574 (790)
T ss_pred HHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCC-CCceeecceEEecCCcEEEEECCCC
Confidence 334445677778888999988876665555444444455668999999999975 5899999999999999999999999
Q ss_pred ccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCCh
Q 020477 116 SGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195 (325)
Q Consensus 116 sGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (325)
+||||++|+|..+ ++.++|.|.+||+|+...+....+ ..||.||||..+|.+ |...|+. ++.+.++.
T Consensus 575 aGKSTimRlLfRf--fdv~sGsI~iDgqdIrnvt~~SLR-s~IGVVPQDtvLFNd-TI~yNIr---------yak~~Asn 641 (790)
T KOG0056|consen 575 AGKSTIMRLLFRF--FDVNSGSITIDGQDIRNVTQSSLR-SSIGVVPQDTVLFND-TILYNIR---------YAKPSASN 641 (790)
T ss_pred CchhHHHHHHHHH--hhccCceEEEcCchHHHHHHHHHH-HhcCcccCcceeecc-eeeehee---------ecCCCCCh
Confidence 9999999999998 778999999999999887665544 347889999988765 3322322 34444555
Q ss_pred HHHHHh-----HHHHHHhcCCccccccccCCC---CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHH
Q 020477 196 IEFYAY-----LYPKLERLSMKTDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVN 267 (325)
Q Consensus 196 ~~~~~~-----~~~~l~~~~l~~~~~~~~~~~---~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~ 267 (325)
++..+. +++.+-.+.-+ .+..+++ .|||||||||||||+++++|.+++|||.||+||..+++.|...|.
T Consensus 642 eevyaAAkAA~IHdrIl~fPeg---Y~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~ 718 (790)
T KOG0056|consen 642 EEVYAAAKAAQIHDRILQFPEG---YNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALA 718 (790)
T ss_pred HHHHHHHHHhhHHHHHhcCchh---hhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHH
Confidence 554433 23333333322 2333332 599999999999999999999999999999999999999999999
Q ss_pred hccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHh-CCee
Q 020477 268 GLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE-GGYK 320 (325)
Q Consensus 268 ~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~-~~~~ 320 (325)
++.+. +|-|+|.|.+..+. .+|.|+++++|+|++.|..+ +++.. +|.|
T Consensus 719 rlca~-RTtIVvAHRLSTiv--nAD~ILvi~~G~IvErG~He--eLl~rdgG~Y 767 (790)
T KOG0056|consen 719 RLCAN-RTTIVVAHRLSTIV--NADLILVISNGRIVERGRHE--ELLKRDGGAY 767 (790)
T ss_pred HHhcC-CceEEEeeeehhee--cccEEEEEeCCeEeecCcHH--HHHhccCCcH
Confidence 99864 57788999776664 47999999999999999765 44444 5543
No 309
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.2e-42 Score=379.98 Aligned_cols=252 Identities=19% Similarity=0.273 Sum_probs=186.9
Q ss_pred hhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCc
Q 020477 38 RRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGS 116 (325)
Q Consensus 38 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGs 116 (325)
....++.+..+..|+.++++..+...... ..........|+++||+|+|+.. ++++|+|+||+|++||++||+|||||
T Consensus 344 ~~~~~~~a~~a~~ri~~ii~~~~~~~~~~-~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGs 422 (1466)
T PTZ00265 344 NITEYMKSLEATNSLYEIINRKPLVENND-DGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGC 422 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCC
Confidence 34568888888999998887554322111 11111112369999999999743 24699999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCccEEEE-CCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh---------h
Q 020477 117 GKSTLSKVLVGHPDYEVTEGSVVF-KGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR---------R 186 (325)
Q Consensus 117 GKSTLl~~l~Gl~~~~p~~G~I~~-~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~---------~ 186 (325)
|||||+++|+|+ ++|++|+|.+ +|.++..++...++ ..+++++|++.+|+. |+.+|+.++..... .
T Consensus 423 GKSTLl~lL~gl--~~p~~G~I~i~~g~~i~~~~~~~lr-~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~ 498 (1466)
T PTZ00265 423 GKSTILKLIERL--YDPTEGDIIINDSHNLKDINLKWWR-SKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYN 498 (1466)
T ss_pred CHHHHHHHHHHh--ccCCCCeEEEeCCcchhhCCHHHHH-HhccEecccccchhc-cHHHHHHhcCCCccccchhccccc
Confidence 999999999998 8899999999 56888777665443 358899999999875 89999876421000 0
Q ss_pred hc---------------------------------------CCCCCChHHHHHhHHHHHHhcCCcc---------ccccc
Q 020477 187 KL---------------------------------------GQPEIGPIEFYAYLYPKLERLSMKT---------DFLNR 218 (325)
Q Consensus 187 ~~---------------------------------------~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~ 218 (325)
.. ....... +.+.++++.+++.. +..-.
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 499 EDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD----SEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccchhhhcccccchhhhhhcccccccCCH----HHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 00 0001111 22444445554421 11111
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 219 NVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 219 ~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
..+..||||||||++|||||+++|+||||||||++||+.+++.+.+.|+++.+ +|+|+|+|||+++.+. . ||+|++|
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~-~-aD~Iivl 652 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIR-Y-ANTIFVL 652 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 22345999999999999999999999999999999999999999999999875 5889999999999875 4 7999999
Q ss_pred eCC
Q 020477 298 EDG 300 (325)
Q Consensus 298 ~~G 300 (325)
++|
T Consensus 653 ~~g 655 (1466)
T PTZ00265 653 SNR 655 (1466)
T ss_pred eCC
Confidence 986
No 310
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.6e-42 Score=354.28 Aligned_cols=225 Identities=25% Similarity=0.321 Sum_probs=181.9
Q ss_pred EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC--CccEEEECCEeCCCCCHHHHhhcc
Q 020477 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--TEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p--~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++|++++|++ +.+|+|+|+++++||++||+||||||||||+++|+|+ .+| .+|+|.++|+++.. ..+ ..
T Consensus 71 ~~~l~~~~~~--~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~--~~~~~~sG~I~inG~~~~~---~~~--~~ 141 (659)
T PLN03211 71 ISDETRQIQE--RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR--IQGNNFTGTILANNRKPTK---QIL--KR 141 (659)
T ss_pred cccccccCCC--CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC--CCCCceeEEEEECCEECch---hhc--cc
Confidence 5667777753 6799999999999999999999999999999999997 455 48999999998642 112 34
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccc-----cCCCCCChHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR-----NVNEGFSGGERKRN 232 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~LSgGqrQRv 232 (325)
++|++|++.+++.+|+.+++......+ .. .....++..+++.++++.+|+. +..++ ... +|||||||||
T Consensus 142 i~yv~Q~~~l~~~lTV~E~l~~~a~~~---~~-~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~-~LSgGerqRv 215 (659)
T PLN03211 142 TGFVTQDDILYPHLTVRETLVFCSLLR---LP-KSLTKQEKILVAESVISELGLT-KCENTIIGNSFIR-GISGGERKRV 215 (659)
T ss_pred eEEECcccccCCcCCHHHHHHHHHHhC---CC-CCCCHHHHHHHHHHHHHHcCCh-hhcCceeCCCCCC-CcChhhhhHH
Confidence 889999999999999999987643211 11 1122344456678889999995 33332 233 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh-HHhhhCCcEEEEEeCCEEEEEcCccH-
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR-LLEFIKPTFIHIMEDGRIIKTGDASI- 310 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~-~~~~~~~d~i~vl~~G~iv~~g~~~~- 310 (325)
+|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++|++++.|+++.
T Consensus 216 ~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~-~D~iilL~~G~iv~~G~~~~~ 294 (659)
T PLN03211 216 SIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM-FDSVLVLSEGRCLFFGKGSDA 294 (659)
T ss_pred HHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hceEEEecCCcEEEECCHHHH
Confidence 9999999999999999999999999999999999999877899999999997 46665 69999999999999998764
Q ss_pred HHHHHhCCee
Q 020477 311 ATVLEEGGYK 320 (325)
Q Consensus 311 ~~~~~~~~~~ 320 (325)
.+.++..|+.
T Consensus 295 ~~~f~~~G~~ 304 (659)
T PLN03211 295 MAYFESVGFS 304 (659)
T ss_pred HHHHHHCCCC
Confidence 3556766664
No 311
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=6.2e-42 Score=350.57 Aligned_cols=222 Identities=22% Similarity=0.319 Sum_probs=188.2
Q ss_pred CcEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 76 PLLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
++|+++|++++|+.+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++...+...+
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL--DKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEcCcCCHHHH
Confidence 489999999999632 24699999999999999999999999999999999998 67999999999999987765443
Q ss_pred ---hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 154 ---SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 154 ---~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
++..+++++|++.+++..++.+++...... .+ ....+...++.+.++.+++. +..++.+.. |||||+|
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~-LS~Gq~q 151 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVY----AG---LERKQRLLRAQELLQRLGLE-DRVEYQPSQ-LSGGQQQ 151 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHCCCh-hhhcCCccc-CCHHHHH
Confidence 235689999999999888888887653211 11 11233445677889999996 566777764 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|++|||||+.+|++|||||||+|||+.+++.+.++|+++++++.|+|++||+++.+. . ||++++|++|++++.|+.+.
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~-~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-Q-AERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-h-CCEEEEEECCEEEeecCccc
Confidence 999999999999999999999999999999999999998767899999999999875 4 69999999999999998763
No 312
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=346.48 Aligned_cols=212 Identities=20% Similarity=0.289 Sum_probs=170.2
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|. .
T Consensus 1 ml~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~------------~ 64 (530)
T PRK15064 1 MLSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD--LEPSAGNVSLDPN------------E 64 (530)
T ss_pred CEEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCC------------C
Confidence 5899999999963 5799999999999999999999999999999999998 6789999999872 1
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHH-Hh------hhcCCCCC------------------ChHHHHHhHHHHHHhcCC
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNA-RR------RKLGQPEI------------------GPIEFYAYLYPKLERLSM 211 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~------------------~~~~~~~~~~~~l~~~~l 211 (325)
.+++++|++.+++.+++.+++...... .. ........ ...+...++.++++.+++
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 378899999888888988887643210 00 00000000 001123456778999999
Q ss_pred ccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCC
Q 020477 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKP 291 (325)
Q Consensus 212 ~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~ 291 (325)
.....++.+. +|||||||||+|||||+.+|++|||||||++||+.+++++.++|.+ .|.|||+||||++++..+ |
T Consensus 145 ~~~~~~~~~~-~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~-~ 219 (530)
T PRK15064 145 PEEQHYGLMS-EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSV-C 219 (530)
T ss_pred ChhHhcCchh-hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhh-c
Confidence 5323345555 5999999999999999999999999999999999999999999974 378999999999999887 6
Q ss_pred cEEEEEeCCEEE-EEcCcc
Q 020477 292 TFIHIMEDGRII-KTGDAS 309 (325)
Q Consensus 292 d~i~vl~~G~iv-~~g~~~ 309 (325)
|++++|++|+++ +.|+++
T Consensus 220 d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 220 THMADLDYGELRVYPGNYD 238 (530)
T ss_pred ceEEEEeCCEEEEecCCHH
Confidence 999999999994 677764
No 313
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.7e-42 Score=377.88 Aligned_cols=255 Identities=19% Similarity=0.199 Sum_probs=197.4
Q ss_pred hHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCC-------------CCC----CCCCCcEEEEEEEEEECCCccccee
Q 020477 34 PLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSD-------------GQD----EKSQPLLQVTGLTAVIAESKQEILK 96 (325)
Q Consensus 34 ~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-------------~~~----~~~~~~l~~~~ls~~y~~~~~~iL~ 96 (325)
.+......+.....+.+|+.+..+.+++....... ... -+....|+++||+++|+.+.+++|+
T Consensus 1157 ~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~ 1236 (1490)
T TIGR01271 1157 WAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQ 1236 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceee
Confidence 33444556777788889998887655443211000 000 0123469999999999765578999
Q ss_pred eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHH
Q 020477 97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDF 176 (325)
Q Consensus 97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~ 176 (325)
|+||+|++||.+||+|+||||||||+++|+|+ +. .+|+|.+||.++..++....+. .++++||+|.+|++ |+.+|
T Consensus 1237 ~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl--~~-~~G~I~IdG~di~~i~~~~lR~-~is~IpQdp~LF~G-TIR~N 1311 (1490)
T TIGR01271 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL--LS-TEGEIQIDGVSWNSVTLQTWRK-AFGVIPQKVFIFSG-TFRKN 1311 (1490)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh--cC-CCcEEEECCEEcccCCHHHHHh-ceEEEeCCCccCcc-CHHHH
Confidence 99999999999999999999999999999998 54 7899999999999988776553 58899999999986 88888
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc------ccccccC---CCCCChHHHHHHHHHHHHHhCCCEEEE
Q 020477 177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT------DFLNRNV---NEGFSGGERKRNEILQLAVLGADLAIL 247 (325)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~---~~~LSgGqrQRv~iAraL~~~p~lLlL 247 (325)
+... . ..++++ +.++++.+++.. +-++..+ +.+||||||||++|||||+++|+||||
T Consensus 1312 Ldp~--------~--~~tdee----i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlL 1377 (1490)
T TIGR01271 1312 LDPY--------E--QWSDEE----IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377 (1490)
T ss_pred hCcc--------c--CCCHHH----HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 7431 0 112222 344455555421 1122222 335999999999999999999999999
Q ss_pred eCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 248 DEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 248 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||||+||.++.+.|.+.|++..+ ++|||+|||+++.+.. +|+|++|++|+|++.|+++.
T Consensus 1378 DEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~ti~~--~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1378 DEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEALLE--CQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred eCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHh--CCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999998754 6899999999988875 69999999999999998753
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-42 Score=345.65 Aligned_cols=209 Identities=25% Similarity=0.369 Sum_probs=172.1
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|.
T Consensus 317 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~p~~G~i~~~~~----------- 381 (530)
T PRK15064 317 RNALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE--LEPDSGTVKWSEN----------- 381 (530)
T ss_pred CceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCc-----------
Confidence 358999999999964 5799999999999999999999999999999999998 6799999999873
Q ss_pred hccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 155 LAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 155 ~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
..++|++|++. +++.+++.+++.... ... .....+.++++.+++..+..++.+.+ |||||||||
T Consensus 382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~--------~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~qrv 447 (530)
T PRK15064 382 -ANIGYYAQDHAYDFENDLTLFDWMSQWR--------QEG----DDEQAVRGTLGRLLFSQDDIKKSVKV-LSGGEKGRM 447 (530)
T ss_pred -eEEEEEcccccccCCCCCcHHHHHHHhc--------cCC----ccHHHHHHHHHHcCCChhHhcCcccc-cCHHHHHHH
Confidence 24789999874 445577777653210 000 01234667889999853456777765 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCccHH
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDASIA 311 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~~~~ 311 (325)
+|||||+.+|++|||||||+|||+.+++.+.+.|+++ +.|||+||||++++..+ ||++++|++|+++ +.|+++
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~-~d~i~~l~~g~i~~~~g~~~-- 521 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSL-ATRIIEITPDGVVDFSGTYE-- 521 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHh-CCEEEEEECCeEEEcCCCHH--
Confidence 9999999999999999999999999999999999987 34999999999999887 6999999999998 677654
Q ss_pred HHHHhCC
Q 020477 312 TVLEEGG 318 (325)
Q Consensus 312 ~~~~~~~ 318 (325)
++++..|
T Consensus 522 ~~~~~~~ 528 (530)
T PRK15064 522 EYLRSQG 528 (530)
T ss_pred HHHHHhC
Confidence 4445443
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.8e-42 Score=347.86 Aligned_cols=213 Identities=23% Similarity=0.336 Sum_probs=172.9
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||+++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~--~~p~~G~i~~~~~----------- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--DKEFEGEARPAPG----------- 69 (556)
T ss_pred cEEEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCC-----------
Confidence 458999999999962 36799999999999999999999999999999999998 6799999999741
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHH-H------h---hhcCCCC--C-----------------ChHHHHHhHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNA-R------R---RKLGQPE--I-----------------GPIEFYAYLYPK 205 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~-~------~---~~~~~~~--~-----------------~~~~~~~~~~~~ 205 (325)
..++|++|++.+++.+++.+++...... . . ....... . ...+...++.++
T Consensus 70 -~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 70 -IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred -CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 2488999999888888999988653210 0 0 0000000 0 000123456778
Q ss_pred HHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020477 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL 285 (325)
Q Consensus 206 l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~ 285 (325)
++.+++. . .++.+.+ |||||||||+|||||+.+|++|||||||++||+.+++++.+.|+++. .|||+||||+++
T Consensus 149 l~~~gl~-~-~~~~~~~-LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~ 222 (556)
T PRK11819 149 MDALRCP-P-WDAKVTK-LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYF 222 (556)
T ss_pred HHhCCCC-c-ccCchhh-cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHH
Confidence 8999984 3 5677764 99999999999999999999999999999999999999999999873 499999999999
Q ss_pred HhhhCCcEEEEEeCCEEE-EEcCcc
Q 020477 286 LEFIKPTFIHIMEDGRII-KTGDAS 309 (325)
Q Consensus 286 ~~~~~~d~i~vl~~G~iv-~~g~~~ 309 (325)
+..+ ||+|++|++|+++ +.|+.+
T Consensus 223 ~~~~-~d~i~~l~~g~i~~~~g~~~ 246 (556)
T PRK11819 223 LDNV-AGWILELDRGRGIPWEGNYS 246 (556)
T ss_pred HHhh-cCeEEEEeCCEEEEecCCHH
Confidence 9987 6999999999986 667654
No 316
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.1e-42 Score=301.78 Aligned_cols=192 Identities=17% Similarity=0.257 Sum_probs=156.6
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++|++++|++ +.+++ +||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++.... ..
T Consensus 1 ~l~~~~l~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~-----~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGI--MQPSSGNIYYKNCNINNIA-----KP 70 (195)
T ss_pred CeEEEEeeEEECC--cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCcccChhh-----hh
Confidence 5889999999963 44554 9999999999999999999999999999998 6799999999999875432 12
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.+++++|++.+++..++.+++...... .. . .+.+.++++.+++. +..++.+. .||||||||++|||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~----~~-----~---~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~~rl~la~ 136 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEI----YN-----S---AETLYAAIHYFKLH-DLLDEKCY-SLSSGMQKIVAIAR 136 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHh----cc-----c---HHHHHHHHHHcCCH-hhhccChh-hCCHHHHHHHHHHH
Confidence 367888988777778888887553211 11 0 12355667888885 45666665 49999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEE
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFI 294 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i 294 (325)
||+.+|++|||||||+|||+.+++.+.+.|+++.+++.|||++|||++.+.. +|.+
T Consensus 137 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~--~~~~ 192 (195)
T PRK13541 137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS--AQIL 192 (195)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch--hhee
Confidence 9999999999999999999999999999998766668899999999988876 3543
No 317
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.5e-42 Score=307.79 Aligned_cols=195 Identities=22% Similarity=0.276 Sum_probs=156.2
Q ss_pred EEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCC--CcchHHHH
Q 020477 100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIP--GVNNIDFL 177 (325)
Q Consensus 100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~--~~~~~~~~ 177 (325)
|+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++.. . +..++|++|++.++. ..++.+++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~-----~-~~~i~~v~q~~~~~~~~~~tv~~~l 72 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGL--IPPAKGTVKVAGASPGK-----G-WRHIGYVPQRHEFAWDFPISVAHTV 72 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCccchH-----h-hCcEEEecccccccCCCCccHHHHH
Confidence 57899999999999999999999999998 67999999999987531 1 235889999986543 35677776
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHH
Q 020477 178 HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257 (325)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~ 257 (325)
............. ........+.++++.+++. +..++.+.+ ||||||||++|||||+.+|++|||||||++||+.
T Consensus 73 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~laral~~~p~llilDEP~~~LD~~ 147 (223)
T TIGR03771 73 MSGRTGHIGWLRR---PCVADFAAVRDALRRVGLT-ELADRPVGE-LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMP 147 (223)
T ss_pred HhccccccccccC---CcHHHHHHHHHHHHHhCCc-hhhcCChhh-CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 5431100000000 1112234577788999996 556777764 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 258 ~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+++.+.+.|+++.++|.|||++|||++++..+ ||+++++ +|++++.|+.+
T Consensus 148 ~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~-~d~i~~l-~G~i~~~~~~~ 197 (223)
T TIGR03771 148 TQELLTELFIELAGAGTAILMTTHDLAQAMAT-CDRVVLL-NGRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEE-CCEEEeecCHH
Confidence 99999999999976688999999999988877 6999999 89999998765
No 318
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=8.2e-42 Score=293.27 Aligned_cols=163 Identities=20% Similarity=0.275 Sum_probs=138.6
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++ ++.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|. ..
T Consensus 1 i~~~~~~~~~~~-~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~~~------------~~ 65 (166)
T cd03223 1 IELENLSLATPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL--WPWGSGRIGMPEG------------ED 65 (166)
T ss_pred CEEEEEEEEcCC-CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCC------------ce
Confidence 478999999963 35799999999999999999999999999999999998 6789999999873 24
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++|++.++ ..++.+++... ... .||||||||++||||
T Consensus 66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~-~LS~G~~~rv~lara 105 (166)
T cd03223 66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDD-VLSGGEQQRLAFARL 105 (166)
T ss_pred EEEECCCCccc-cccHHHHhhcc--------------------------------------CCC-CCCHHHHHHHHHHHH
Confidence 78899998654 34555443110 122 499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
|+.+|++|||||||++||+.+++.+.+.|+++ +.|+|++|||+++. .. +|++++|++|
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~-~~-~d~i~~l~~~ 163 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW-KF-HDRVLDLDGE 163 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHH-hh-CCEEEEEcCC
Confidence 99999999999999999999999999999987 47999999999875 45 7999999875
No 319
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-43 Score=291.30 Aligned_cols=208 Identities=26% Similarity=0.419 Sum_probs=176.6
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++++. |..++.++|+++||++.+||+++|+||||||||||+|+++-| ..|++|+++|.|++++.+.+...+. .
T Consensus 4 le~kq~~--y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L--isp~~G~l~f~Ge~vs~~~pea~Rq-~ 78 (223)
T COG4619 4 LELKQVG--YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL--ISPTSGTLLFEGEDVSTLKPEAYRQ-Q 78 (223)
T ss_pred hHHHHHH--hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc--cCCCCceEEEcCccccccChHHHHH-H
Confidence 4555555 333457899999999999999999999999999999999998 6899999999999999988876443 3
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+.|+.|.|.+|++ |+.+|+-+.+..+... ++ ..++.+.++++++...++.+.+. .||||||||++|+|-
T Consensus 79 VsY~~Q~paLfg~-tVeDNlifP~~~r~rr---~d------r~aa~~llar~~l~~~~L~k~it-~lSGGE~QriAliR~ 147 (223)
T COG4619 79 VSYCAQTPALFGD-TVEDNLIFPWQIRNRR---PD------RAAALDLLARFALPDSILTKNIT-ELSGGEKQRIALIRN 147 (223)
T ss_pred HHHHHcCcccccc-chhhccccchHHhccC---CC------hHHHHHHHHHcCCchhhhcchhh-hccchHHHHHHHHHH
Confidence 6788899999875 7888887777654321 11 23466789999998778888876 499999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
|..-|+||+||||||+||+.+++.|.++|.++. .+..+++.||||.+.+... +|+++.+..|.+
T Consensus 148 Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rh-a~k~itl~~G~~ 212 (223)
T COG4619 148 LQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRH-ADKVITLQPGHA 212 (223)
T ss_pred hhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhh-hheEEEeccCcc
Confidence 999999999999999999999999999999997 5578999999999987776 689999988876
No 320
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.3e-41 Score=312.55 Aligned_cols=205 Identities=25% Similarity=0.329 Sum_probs=156.8
Q ss_pred CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
...+.|+++|+++. . +.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.
T Consensus 35 ~~~~~l~i~nls~~-~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl--~~p~~G~I~i~g~--------- 99 (282)
T cd03291 35 SDDNNLFFSNLCLV-G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE--LEPSEGKIKHSGR--------- 99 (282)
T ss_pred CCCCeEEEEEEEEe-c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCE---------
Confidence 45668999999985 2 4699999999999999999999999999999999998 6899999999882
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH--HhHHHHHHhcCCccc-cccccCCCCCChHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY--AYLYPKLERLSMKTD-FLNRNVNEGFSGGER 229 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~-~~~~~~~~~LSgGqr 229 (325)
++|++|++.+++. ++.+++...... . .....+.. ..+.+.++.+....+ ..++.+. .||||||
T Consensus 100 -----i~yv~q~~~l~~~-tv~enl~~~~~~-----~--~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~-~LSgGq~ 165 (282)
T cd03291 100 -----ISFSSQFSWIMPG-TIKENIIFGVSY-----D--EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI-TLSGGQR 165 (282)
T ss_pred -----EEEEeCccccccc-CHHHHhhccccc-----C--HHHHHHHHHHhCCHHHHHhccccccceecCCCC-cCCHHHH
Confidence 7788999887764 777776542110 0 00000000 012222333322111 1222233 5999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH-HhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV-NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
||++|||||+.+|++|||||||+|||+.+++.+++.+ .++. ++.|||++|||++.+. . ||++++|++|++++.|++
T Consensus 166 qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~-~-~d~i~~l~~G~i~~~g~~ 242 (282)
T cd03291 166 ARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-K-ADKILILHEGSSYFYGTF 242 (282)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHH-h-CCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999865 5554 4689999999999875 4 799999999999999886
Q ss_pred c
Q 020477 309 S 309 (325)
Q Consensus 309 ~ 309 (325)
+
T Consensus 243 ~ 243 (282)
T cd03291 243 S 243 (282)
T ss_pred H
Confidence 5
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.1e-41 Score=341.32 Aligned_cols=212 Identities=23% Similarity=0.330 Sum_probs=170.1
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+++++||+++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+ .+|++|+|.+++.
T Consensus 3 ~~i~~~nls~~~~~-~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~--~~p~~G~i~~~~~------------ 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--DKEFNGEARPAPG------------ 67 (552)
T ss_pred EEEEEeeEEEecCC-CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCC------------
Confidence 48999999999962 35799999999999999999999999999999999998 6799999998751
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHH-Hh-----h----hcCCCCCCh-------------------HHHHHhHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNA-RR-----R----KLGQPEIGP-------------------IEFYAYLYPKL 206 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~-~~-----~----~~~~~~~~~-------------------~~~~~~~~~~l 206 (325)
..++|++|++.+++.+|+.+++...... .. . ......... .....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 2488999999888888999988653211 00 0 001100000 00123455677
Q ss_pred HhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020477 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL 286 (325)
Q Consensus 207 ~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~ 286 (325)
+.+++. . .++.+. .|||||||||+|||||+.+|++|||||||++||+.+++++.+.|+++. .|||+||||++++
T Consensus 148 ~~~~l~-~-~~~~~~-~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~---~tvIiisHd~~~~ 221 (552)
T TIGR03719 148 DALRCP-P-WDADVT-KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTHDRYFL 221 (552)
T ss_pred hhCCCC-c-ccCchh-hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC---CeEEEEeCCHHHH
Confidence 788874 2 466666 499999999999999999999999999999999999999999999873 4999999999999
Q ss_pred hhhCCcEEEEEeCCEEE-EEcCcc
Q 020477 287 EFIKPTFIHIMEDGRII-KTGDAS 309 (325)
Q Consensus 287 ~~~~~d~i~vl~~G~iv-~~g~~~ 309 (325)
..+ ||++++|++|+++ ..|+.+
T Consensus 222 ~~~-~d~v~~l~~g~i~~~~g~~~ 244 (552)
T TIGR03719 222 DNV-AGWILELDRGRGIPWEGNYS 244 (552)
T ss_pred Hhh-cCeEEEEECCEEEEecCCHH
Confidence 987 6999999999976 667665
No 322
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.5e-41 Score=319.66 Aligned_cols=186 Identities=23% Similarity=0.396 Sum_probs=158.2
Q ss_pred EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC
Q 020477 110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG 189 (325)
Q Consensus 110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (325)
|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.. +..++|+||++.+|+.+++.+++.+..... +
T Consensus 1 l~G~nGsGKSTLl~~iaGl--~~p~~G~I~i~g~~i~~~~~~---~~~i~~v~q~~~l~~~~tv~enl~~~~~~~----~ 71 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF--EQPDSGSIMLDGEDVTNVPPH---LRHINMVFQSYALFPHMTVEENVAFGLKMR----K 71 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC--CCCCceEEEECCEECCCCCHH---HCCEEEEecCccccCCCcHHHHHHHHHhhc----C
Confidence 6899999999999999998 689999999999998765542 235889999999999999999987653211 1
Q ss_pred CCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhc
Q 020477 190 QPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269 (325)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l 269 (325)
....+...++.++++.+++. ++.++.+.+ |||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++
T Consensus 72 ---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 72 ---VPRAEIKPRVLEALRLVQLE-EFADRKPHQ-LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred ---CCHHHHHHHHHHHHHHcCCc-chhcCChhh-CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 11233345677889999996 567777765 9999999999999999999999999999999999999999999998
Q ss_pred cCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 270 LTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 270 ~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
.++ |.|||+||||++++..+ ||++++|++|++++.|+++.
T Consensus 147 ~~~~g~tiiivTHd~~e~~~~-~d~i~vl~~G~i~~~g~~~~ 187 (325)
T TIGR01187 147 QEQLGITFVFVTHDQEEAMTM-SDRIAIMRKGKIAQIGTPEE 187 (325)
T ss_pred HHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 755 88999999999998887 69999999999999998753
No 323
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-41 Score=287.52 Aligned_cols=225 Identities=24% Similarity=0.362 Sum_probs=185.4
Q ss_pred CCcEEEEEEEEEECC-------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC
Q 020477 75 QPLLQVTGLTAVIAE-------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE 147 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~-------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~ 147 (325)
.+.++++|+++.|.. ....+++.|||++++|+.+||+|.||||||||.|+|+|+ .+|++|+|.+||+.+..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm--i~PTsG~il~n~~~L~~ 79 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM--IEPTSGEILINDHPLHF 79 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc--cCCCCceEEECCccccc
Confidence 357899999998842 224589999999999999999999999999999999998 78999999999998866
Q ss_pred CCHHHHhhccEEEeccCCcc--CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020477 148 MEPEERSLAGLFMSFQSPVE--IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS 225 (325)
Q Consensus 148 ~~~~~~~~~~i~~~~Q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 225 (325)
.+...|. ..|-++||+|.. .|.+..-..+...... ..+.+..+...++.+.+..+|+-++..+-.+.. ||
T Consensus 80 ~Dy~~R~-k~IRMiFQDpnts~NPRl~iGqiLd~PL~l------~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~-la 151 (267)
T COG4167 80 GDYSFRS-KRIRMIFQDPNTSLNPRLRIGQILDFPLRL------NTDLEPEQRRKQIFETLRMVGLLPDHANYYPHM-LA 151 (267)
T ss_pred cchHhhh-hheeeeecCCccccChhhhhhhHhcchhhh------cccCChHHHHHHHHHHHHHhccCccccccchhh-cC
Confidence 5444444 357789999863 2333333322222211 123345566678899999999988877777764 99
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
-||||||++||||+.+|+|+|.||..++||...+.++.+++.++.++ |.+.|+|+.++..+..+ +|.|+||+.|++++
T Consensus 152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi-~D~viVM~EG~vvE 230 (267)
T COG4167 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHI-SDQVLVMHEGEVVE 230 (267)
T ss_pred chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhh-cccEEEEecCceee
Confidence 99999999999999999999999999999999999999999999855 99999999999999998 69999999999999
Q ss_pred EcCccH
Q 020477 305 TGDASI 310 (325)
Q Consensus 305 ~g~~~~ 310 (325)
.|.+..
T Consensus 231 ~G~t~~ 236 (267)
T COG4167 231 RGSTAD 236 (267)
T ss_pred cCChhh
Confidence 998653
No 324
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-41 Score=342.84 Aligned_cols=203 Identities=26% Similarity=0.373 Sum_probs=165.6
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++|+++||++.|++ +.+|+|+||+|.+|+++||+||||||||||+|+|+|+ .+|++|+|.+++.
T Consensus 309 ~~~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~---------- 374 (638)
T PRK10636 309 PNPLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE--LAPVSGEIGLAKG---------- 374 (638)
T ss_pred CCceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCC----------
Confidence 3568999999999963 6799999999999999999999999999999999998 6799999999741
Q ss_pred hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 154 ~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
..++|++|+.. +.+..++.+++.. .. . ......+.++++.+++..+..++++.. ||||||||
T Consensus 375 --~~igy~~Q~~~~~l~~~~~~~~~~~~--------~~-~----~~~~~~~~~~L~~~~l~~~~~~~~~~~-LSgGekqR 438 (638)
T PRK10636 375 --IKLGYFAQHQLEFLRADESPLQHLAR--------LA-P----QELEQKLRDYLGGFGFQGDKVTEETRR-FSGGEKAR 438 (638)
T ss_pred --EEEEEecCcchhhCCccchHHHHHHH--------hC-c----hhhHHHHHHHHHHcCCChhHhcCchhh-CCHHHHHH
Confidence 14788899742 2333344433211 00 0 111245677899999854456777765 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCccH
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDASI 310 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~~~ 310 (325)
|+|||+|+.+|++|||||||+|||+.+++.+.++|.++ .| |||+||||++++..+ ||++++|++|+++ +.|+.+.
T Consensus 439 l~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~ 514 (638)
T PRK10636 439 LVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRST-TDDLYLVHDGKVEPFDGDLED 514 (638)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHh-CCEEEEEECCEEEEcCCCHHH
Confidence 99999999999999999999999999999999999998 34 999999999999887 6999999999997 6777653
No 325
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-42 Score=307.29 Aligned_cols=197 Identities=20% Similarity=0.300 Sum_probs=168.6
Q ss_pred eeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH---HhhccEEEeccCCccCCCcc
Q 020477 96 KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE---RSLAGLFMSFQSPVEIPGVN 172 (325)
Q Consensus 96 ~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~---~~~~~i~~~~Q~~~~~~~~~ 172 (325)
=+++|+.+.-.++||.|+||||||||+|+|+|+ .+|++|.|.+||.-+.+..... ..+..++||||+..+||.++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL--~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGL--TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhcc--CCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 368999988679999999999999999999998 7899999999998764432110 11234899999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCc
Q 020477 173 NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252 (325)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPts 252 (325)
+..|+.++.... ....+..+.+.+|+. +++++.+.. |||||||||+|+|||+..|++|+||||.|
T Consensus 93 VrgNL~YG~~~~-------------~~~~fd~iv~lLGI~-hLL~R~P~~-LSGGEkQRVAIGRALLt~P~LLLmDEPLa 157 (352)
T COG4148 93 VRGNLRYGMWKS-------------MRAQFDQLVALLGIE-HLLDRYPGT-LSGGEKQRVAIGRALLTAPELLLMDEPLA 157 (352)
T ss_pred Eecchhhhhccc-------------chHhHHHHHHHhCcH-HHHhhCCCc-cCcchhhHHHHHHHHhcCCCeeeecCchh
Confidence 999887654211 123456678889996 789999875 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 253 GLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 253 gLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+||...+++++-+|.++.++ ...|++|||.++++... ||+|++|++|++.+.|+.+.
T Consensus 158 SLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RL-Ad~vV~le~GkV~A~g~~e~ 215 (352)
T COG4148 158 SLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRL-ADRVVVLENGKVKASGPLEE 215 (352)
T ss_pred hcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhh-hheEEEecCCeEEecCcHHH
Confidence 99999999999999999876 78999999999999998 79999999999999998653
No 326
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.9e-41 Score=310.05 Aligned_cols=205 Identities=24% Similarity=0.306 Sum_probs=160.1
Q ss_pred EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE-----------ECCEeCCCCC
Q 020477 81 TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV-----------FKGENLLEME 149 (325)
Q Consensus 81 ~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~-----------~~g~~i~~~~ 149 (325)
.||+++|+. .+.+|+|+|+ +++||+++|+||||||||||+|+|+|+ ++|++|+|. ++|+++....
T Consensus 4 ~~~~~~y~~-~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~ 79 (255)
T cd03236 4 DEPVHRYGP-NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGK--LKPNLGKFDDPPDWDEILDEFRGSELQNYF 79 (255)
T ss_pred cCcceeecC-cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCC--cCCCCceEeeccccchhhhhccCchhhhhh
Confidence 478999964 2469999995 999999999999999999999999998 789999996 7788775432
Q ss_pred HHHHh-hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020477 150 PEERS-LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE 228 (325)
Q Consensus 150 ~~~~~-~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq 228 (325)
...++ ...+++++|+...++. +..+++..... .......+.++++.+++. +..++.+. .|||||
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~------------~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LS~G~ 144 (255)
T cd03236 80 TKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK------------KKDERGKLDELVDQLELR-HVLDRNID-QLSGGE 144 (255)
T ss_pred HHhhhcccceeeecchhccCch-HHHHHHHHHhc------------hhHHHHHHHHHHHHcCCc-hhhcCChh-hCCHHH
Confidence 22221 2346777888766653 33333322110 111224567788999986 45666665 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
|||++|||||+.+|+++||||||++||+.+++.+.+.|++++++++|||++|||++++..+ ||++++| +|++.+.|
T Consensus 145 ~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~-ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 145 LQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYL-SDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-CCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999999999999977788999999999999877 6999998 46666543
No 327
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.7e-41 Score=306.70 Aligned_cols=188 Identities=23% Similarity=0.273 Sum_probs=152.1
Q ss_pred EEECCCcccceeeeEEEEe-----CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEE
Q 020477 85 AVIAESKQEILKGVNLLVN-----EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF 159 (325)
Q Consensus 85 ~~y~~~~~~iL~~vsl~i~-----~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 159 (325)
|+|++. ...+++++|++. +||+++|+||||||||||+++|+|+ .+|++|+|.++|. .++
T Consensus 1 ~~y~~~-~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~--~~p~~G~i~~~g~-------------~i~ 64 (246)
T cd03237 1 YTYPTM-KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--LKPDEGDIEIELD-------------TVS 64 (246)
T ss_pred CCCccc-ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCC--CcCCCCeEEECCc-------------eEE
Confidence 346543 347788888886 7999999999999999999999998 6799999999984 367
Q ss_pred EeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH
Q 020477 160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV 239 (325)
Q Consensus 160 ~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~ 239 (325)
+++|++..+...++.+++...... ... . .....++++.+++. +..++.+.+ |||||||||+|||||+
T Consensus 65 ~~~q~~~~~~~~tv~e~l~~~~~~----~~~----~---~~~~~~~l~~l~l~-~~~~~~~~~-LSgGe~qrv~iaraL~ 131 (246)
T cd03237 65 YKPQYIKADYEGTVRDLLSSITKD----FYT----H---PYFKTEIAKPLQIE-QILDREVPE-LSGGELQRVAIAACLS 131 (246)
T ss_pred EecccccCCCCCCHHHHHHHHhhh----ccc----c---HHHHHHHHHHcCCH-HHhhCChhh-CCHHHHHHHHHHHHHh
Confidence 889998766667888876543210 000 0 11245678888885 566777764 9999999999999999
Q ss_pred hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
.+|+++||||||++||+.++..+.++|++++++ ++|||+||||++++..+ ||++++|+++..
T Consensus 132 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~-~d~i~~l~~~~~ 194 (246)
T cd03237 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL-ADRLIVFEGEPS 194 (246)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEcCCCe
Confidence 999999999999999999999999999998754 78999999999999887 699999976443
No 328
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.9e-41 Score=337.62 Aligned_cols=200 Identities=30% Similarity=0.375 Sum_probs=169.6
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++++++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++ +
T Consensus 337 ~~~~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl--~~p~~G~I~~~---~-------- 400 (590)
T PRK13409 337 RETLVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV--LKPDEGEVDPE---L-------- 400 (590)
T ss_pred CceEEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEEe---e--------
Confidence 3568999999999963 359999999999999999999999999999999998 67999999985 1
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
.++|++|++..++..++.+++..... ... .. ..+.++++.+++. +..++.+.+ |||||||||+
T Consensus 401 ---~i~y~~Q~~~~~~~~tv~e~l~~~~~----~~~-----~~---~~~~~~L~~l~l~-~~~~~~~~~-LSGGe~QRva 463 (590)
T PRK13409 401 ---KISYKPQYIKPDYDGTVEDLLRSITD----DLG-----SS---YYKSEIIKPLQLE-RLLDKNVKD-LSGGELQRVA 463 (590)
T ss_pred ---eEEEecccccCCCCCcHHHHHHHHhh----hcC-----hH---HHHHHHHHHCCCH-HHHhCCccc-CCHHHHHHHH
Confidence 37889999887778899888764311 111 11 1346778999996 667888875 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||||+.+|++|||||||+|||+.++..+.++|++++++ |.|||+||||++++..+ ||++++|+ |++...|..
T Consensus 464 iAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~-aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 464 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI-SDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEc-Ccceeeeec
Confidence 999999999999999999999999999999999999764 88999999999999887 69999996 587776654
No 329
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4e-41 Score=291.27 Aligned_cols=225 Identities=22% Similarity=0.333 Sum_probs=182.4
Q ss_pred cEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 77 LLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
|+++.|+++.|..+ .+++|+++|++|++|+++.|+|.||||||||+++|+|- ..|++|+|.++|.++..++...|
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~--l~~t~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD--LKPTSGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc--cccCCceEEECceecccCCHHHH
Confidence 46678888877532 36799999999999999999999999999999999996 67999999999999999987766
Q ss_pred hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-ccccccCCCCCChHHHH
Q 020477 154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERK 230 (325)
Q Consensus 154 ~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQ 230 (325)
.. .++-|||+|. .++.+|..||+..+... ....+....-.....+...+.+..+++.- +.++.+++- |||||||
T Consensus 79 A~-~larVfQdp~~gt~~~lTieENl~la~~R-g~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-LSGGQRQ 155 (263)
T COG1101 79 AN-LLARVFQDPLAGTAPELTIEENLALAESR-GKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-LSGGQRQ 155 (263)
T ss_pred hh-HHHHHhcchhhCCcccccHHHHHHHHHhc-CcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-ccchHHH
Confidence 54 3567899985 57889999998776432 11222221112233344555677766642 345666664 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
-+++++|.++.|+||+|||-|++|||.+.+.+++.-.++.++ +.|.+||||+++.+-.+ -+|.++|++|+|+.+-.
T Consensus 156 alsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~y-G~RlImLh~G~IvlDv~ 232 (263)
T COG1101 156 ALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDY-GNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhh-CCeEEEEeCCeEEEEcc
Confidence 999999999999999999999999999999999999998765 67999999999999887 69999999999998744
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.8e-40 Score=334.61 Aligned_cols=204 Identities=22% Similarity=0.336 Sum_probs=167.2
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.+++ +
T Consensus 320 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~G~i~~~~-~---------- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ--EQPDSGTIKIGE-T---------- 384 (552)
T ss_pred CeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCeEEEECC-c----------
Confidence 568999999999964 5799999999999999999999999999999999998 679999999954 2
Q ss_pred hccEEEeccCC-ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~~~~Q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
..++|++|++ .+++.+++.+++...... .+.. ..+ ....++++.+++.....++.+.+ |||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~----~~~~---~~~--~~~~~~l~~~~l~~~~~~~~~~~-LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDI----IQLG---KRE--VPSRAYVGRFNFKGSDQQKKVGQ-LSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccc----cccC---cch--HHHHHHHHhCCCChhHhcCchhh-CCHHHHHHHH
Confidence 1478999986 367778998887654211 0110 011 12446788999853345677765 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC-CEEE-EEcCc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED-GRII-KTGDA 308 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~-G~iv-~~g~~ 308 (325)
|||||+.+|++|||||||+|||+.+++.+.++|+++. + |||+||||++++..+ ||++++|++ |+++ ..|+.
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~~~~~~-~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRWFLDRI-ATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHHHHHHh-CCEEEEEECCCeEEEeCCCH
Confidence 9999999999999999999999999999999999983 3 899999999999887 699999986 5776 44554
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.5e-40 Score=279.02 Aligned_cols=144 Identities=29% Similarity=0.515 Sum_probs=130.8
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
++++|++++|++ ..+++++||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|+ ..
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~~~------------~~ 64 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE--LEPDEGIVTWGST------------VK 64 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCceEEEECCe------------EE
Confidence 478999999964 4799999999999999999999999999999999998 6799999999984 13
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
++|++| ||+||+||++||||
T Consensus 65 i~~~~~------------------------------------------------------------lS~G~~~rv~lara 84 (144)
T cd03221 65 IGYFEQ------------------------------------------------------------LSGGEKMRLALAKL 84 (144)
T ss_pred EEEEcc------------------------------------------------------------CCHHHHHHHHHHHH
Confidence 555544 89999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
|+.+|+++||||||++||+.++..+.+.|+++ +.|||++||+++++..+ +|++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~-~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQV-ATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHh-CCEEEEEeCCC
Confidence 99999999999999999999999999999987 36999999999999877 69999999985
No 332
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.4e-40 Score=335.42 Aligned_cols=205 Identities=23% Similarity=0.331 Sum_probs=168.0
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ .+|++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~p~~G~i~~~~-~---------- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ--EQPDSGTIKIGE-T---------- 386 (556)
T ss_pred CeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECC-c----------
Confidence 468999999999964 5799999999999999999999999999999999998 679999999954 2
Q ss_pred hccEEEeccCC-ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~~~~Q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
..++|++|++ .+++.+++.+++...... .... ..+ .....+++.+++.....++.+.+ |||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~----~~~~---~~~--~~~~~~l~~~~l~~~~~~~~~~~-LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDI----IKVG---NRE--IPSRAYVGRFNFKGGDQQKKVGV-LSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccc----cccc---ccH--HHHHHHHHhCCCChhHhcCchhh-CCHHHHHHHH
Confidence 1378999996 577778998887654211 0100 011 12345788999853345777765 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC-CEEE-EEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED-GRII-KTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~-G~iv-~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.+++.+.+.|.++. + |||+||||++++..+ ||++++|++ |++. ..|+.+
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~~~~~~-~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRWFLDRI-ATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHh-CCEEEEEECCCeEEEecCCHH
Confidence 9999999999999999999999999999999999873 4 899999999999987 699999986 7876 456543
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=340.11 Aligned_cols=209 Identities=27% Similarity=0.372 Sum_probs=160.5
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
||+++||+++|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+ ..|++|+|.++|..
T Consensus 1 ~i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~--~~pd~G~I~~~~~~------------ 64 (638)
T PRK10636 1 MIVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE--ISADGGSYTFPGNW------------ 64 (638)
T ss_pred CEEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCCC------------
Confidence 5899999999964 6799999999999999999999999999999999997 67999999998742
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHH----H------------------HhhhcCCCCCChHHHHHhHHHHHHhcCCccc
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYN----A------------------RRRKLGQPEIGPIEFYAYLYPKLERLSMKTD 214 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~----~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 214 (325)
.+++++|++..+. .+..+++..... . ...... .....+...++.++++.+|+..+
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~lgl~~~ 141 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLD--AIDAWTIRSRAASLLHGLGFSNE 141 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--hcCCcchHHHHHHHHHhCCCCch
Confidence 1455666432221 222222211000 0 000000 00011223457788999999634
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEE
Q 020477 215 FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFI 294 (325)
Q Consensus 215 ~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i 294 (325)
..++.+.. |||||||||+|||||+.+|+||||||||+|||+.++.++.++|+++ +.|||+||||++++..+ ||+|
T Consensus 142 ~~~~~~~~-LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~-~d~i 216 (638)
T PRK10636 142 QLERPVSD-FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPI-VDKI 216 (638)
T ss_pred hhcCchhh-cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHh-cCEE
Confidence 56777765 9999999999999999999999999999999999999999999886 35999999999999987 6999
Q ss_pred EEEeCCEEEE-EcCcc
Q 020477 295 HIMEDGRIIK-TGDAS 309 (325)
Q Consensus 295 ~vl~~G~iv~-~g~~~ 309 (325)
++|++|+++. .|+.+
T Consensus 217 ~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 217 IHIEQQSLFEYTGNYS 232 (638)
T ss_pred EEEeCCEEEEecCCHH
Confidence 9999999964 56544
No 334
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.8e-40 Score=339.30 Aligned_cols=205 Identities=23% Similarity=0.344 Sum_probs=168.8
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++|+++||+++|++ +++|+|+||+|.+|+++||+||||||||||+|+|+|+ .+|++|+|.+ |.++
T Consensus 316 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--~~p~~G~i~~-~~~~-------- 382 (635)
T PRK11147 316 GKIVFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ--LQADSGRIHC-GTKL-------- 382 (635)
T ss_pred CCceEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEE-CCCc--------
Confidence 3568999999999964 5799999999999999999999999999999999998 6799999998 5321
Q ss_pred hhccEEEeccCC-ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 154 SLAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 154 ~~~~i~~~~Q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
.++|++|++ .+++.+++.+++...... .. ... ....+.++++.+++..+..++.+.. |||||||||
T Consensus 383 ---~i~y~~q~~~~l~~~~tv~e~l~~~~~~----~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGekqRl 449 (635)
T PRK11147 383 ---EVAYFDQHRAELDPEKTVMDNLAEGKQE----VM---VNG--RPRHVLGYLQDFLFHPKRAMTPVKA-LSGGERNRL 449 (635)
T ss_pred ---EEEEEeCcccccCCCCCHHHHHHhhccc----cc---ccc--hHHHHHHHHHhcCCCHHHHhChhhh-CCHHHHHHH
Confidence 478889986 477788998887553210 00 000 1234667788898854456777765 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe-CCEEEEE-cCc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME-DGRIIKT-GDA 308 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~-~G~iv~~-g~~ 308 (325)
+|||||+.+|++|||||||+|||+.+++.+.++|+++ +.|||+||||.+++..+ ||++++|+ +|++... |+.
T Consensus 450 ~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~-~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 450 LLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNT-VTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHh-cCEEEEEeCCCeEEEccCCH
Confidence 9999999999999999999999999999999999887 34999999999999887 69999998 8998754 443
No 335
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3e-40 Score=360.45 Aligned_cols=231 Identities=24% Similarity=0.296 Sum_probs=189.6
Q ss_pred CcEEEEEEEEEEC--CCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCH
Q 020477 76 PLLQVTGLTAVIA--ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 76 ~~l~~~~ls~~y~--~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~ 150 (325)
.+++++||++.|+ ++++.+|+|||++|++||++||+||||||||||+++|+|+ .+ |++|+|.++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~--~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER--VTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC--CCCCCcceeEEEECCEECCh---
Confidence 3589999999995 2246799999999999999999999999999999999997 33 688999999998742
Q ss_pred HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC---CCChH
Q 020477 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE---GFSGG 227 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---~LSgG 227 (325)
. . +..++|++|++.+++.+|+.+++......+ .+ ......+..+++.++++.+++. +..++.+++ +||||
T Consensus 833 ~-~-~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~---~~-~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgG 905 (1394)
T TIGR00956 833 S-F-QRSIGYVQQQDLHLPTSTVRESLRFSAYLR---QP-KSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVE 905 (1394)
T ss_pred h-h-hcceeeecccccCCCCCCHHHHHHHHHHhC---CC-CCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHH
Confidence 1 2 234789999988888899999987654321 11 1123344456788899999996 566766652 59999
Q ss_pred HHHHHHHHHHHHhCCC-EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH-hhhCCcEEEEEeCC-EEEE
Q 020477 228 ERKRNEILQLAVLGAD-LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL-EFIKPTFIHIMEDG-RIIK 304 (325)
Q Consensus 228 qrQRv~iAraL~~~p~-lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~-~~~~~d~i~vl~~G-~iv~ 304 (325)
|||||+||+||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|+++.. ... +|++++|++| ++++
T Consensus 906 qrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~-~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEE-FDRLLLLQKGGQTVY 984 (1394)
T ss_pred HhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHh-cCEEEEEcCCCEEEE
Confidence 9999999999999997 9999999999999999999999999987789999999999863 344 6999999997 9999
Q ss_pred EcCcc-----HHHHHHhCCe
Q 020477 305 TGDAS-----IATVLEEGGY 319 (325)
Q Consensus 305 ~g~~~-----~~~~~~~~~~ 319 (325)
.|++. ..+.++..|+
T Consensus 985 ~G~~~~~~~~~~~yf~~~G~ 1004 (1394)
T TIGR00956 985 FGDLGENSHTIINYFEKHGA 1004 (1394)
T ss_pred ECCcccccchHHHHHHhcCC
Confidence 99863 3566777775
No 336
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=312.47 Aligned_cols=271 Identities=23% Similarity=0.359 Sum_probs=201.8
Q ss_pred hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCC--CCCCC-C-CCCCcEEEEEEEEEECCCcccceeeeEEEEeC
Q 020477 29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSS--SDGQD-E-KSQPLLQVTGLTAVIAESKQEILKGVNLLVNE 104 (325)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~~~-~-~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~ 104 (325)
..+..|+-.++..|++...+....+..++....+.... +..+. . .....+.++|++|.|.. .+++|+++||++++
T Consensus 210 ~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~-~r~iL~~isf~i~~ 288 (497)
T COG5265 210 FQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP-RRPILNGISFTIPL 288 (497)
T ss_pred hhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccc-cchhhcCccccccC
Confidence 35566777777777776666655555444333322211 11111 1 12335889999999975 57899999999999
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHH
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR 184 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~ 184 (325)
|+.+|++|++|+||||++++|..+ |++++|.|.+||+++........++ .|+++||+..+|.+ +.. ++.
T Consensus 289 g~tvAiVg~SG~gKsTI~rllfRF--yD~~sG~I~id~qdir~vtq~slR~-aIg~VPQDtvLFND-ti~------yni- 357 (497)
T COG5265 289 GKTVAIVGESGAGKSTILRLLFRF--YDVNSGSITIDGQDIRDVTQQSLRR-AIGIVPQDTVLFND-TIA------YNI- 357 (497)
T ss_pred ccEEEEEeCCCCcHHHHHHHHHHH--hCCcCceEEEcchhHHHhHHHHHHH-HhCcCcccceehhh-hHH------HHH-
Confidence 999999999999999999999998 8899999999999998776555443 47899999988754 111 111
Q ss_pred hhhcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCC---CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020477 185 RRKLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256 (325)
Q Consensus 185 ~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~---~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~ 256 (325)
.++.+..+.++..+. +.+.++.++- ..+..+++ .|||||||||+|||+++.+|+||+|||.||+||.
T Consensus 358 --~ygr~~at~eev~aaa~~aqi~~fi~~lP~---gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt 432 (497)
T COG5265 358 --KYGRPDATAEEVGAAAEAAQIHDFIQSLPE---GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT 432 (497)
T ss_pred --hccCccccHHHHHHHHHHhhhhHHHHhCch---hhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh
Confidence 244555555554433 3334454443 33333332 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCeec
Q 020477 257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKA 321 (325)
Q Consensus 257 ~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~~ 321 (325)
.++++|...|++.. .|.|-++|.|.+..+. .+|.|+||++|+|++.|+. .+++..+|+|+
T Consensus 433 ~te~~iq~~l~~~~-~~rttlviahrlsti~--~adeiivl~~g~i~erg~h--~~ll~~~g~ya 492 (497)
T COG5265 433 HTEQAIQAALREVS-AGRTTLVIAHRLSTII--DADEIIVLDNGRIVERGTH--EELLAAGGLYA 492 (497)
T ss_pred hHHHHHHHHHHHHh-CCCeEEEEeehhhhcc--CCceEEEeeCCEEEecCcH--HHHHHcCChHH
Confidence 99999999999986 4678889999776654 4799999999999999964 57788888764
No 337
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.7e-40 Score=335.86 Aligned_cols=218 Identities=25% Similarity=0.310 Sum_probs=178.8
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCCCHHHHhhccEEEeccCCcc
Q 020477 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVE 167 (325)
Q Consensus 91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~ 167 (325)
++++|+|+|++|++||+++|+||||||||||+++|+|. .++ .+|+|.++|.++.. ... +..++|++|++.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~--~~~~~~~~G~i~~~g~~~~~---~~~-~~~i~yv~Q~~~~ 110 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR--SPKGVKGSGSVLLNGMPIDA---KEM-RAISAYVQQDDLF 110 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCcceeEEEECCEECCH---HHH-hhhceeecccccc
Confidence 46799999999999999999999999999999999997 344 37999999998752 222 2347899999999
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC-----CCChHHHHHHHHHHHHHhCC
Q 020477 168 IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE-----GFSGGERKRNEILQLAVLGA 242 (325)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~LSgGqrQRv~iAraL~~~p 242 (325)
++.+|+.|++.+....+ . ......++...++.+.++.+++. +..++.++. +|||||||||+|||+|+.+|
T Consensus 111 ~~~lTV~e~l~f~~~~~---~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p 185 (617)
T TIGR00955 111 IPTLTVREHLMFQAHLR---M-PRRVTKKEKRERVDEVLQALGLR-KCANTRIGVPGRVKGLSGGERKRLAFASELLTDP 185 (617)
T ss_pred CccCcHHHHHHHHHhcC---C-CCCCCHHHHHHHHHHHHHHcCch-hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCC
Confidence 99999999987654321 1 11223344556788899999996 456666652 59999999999999999999
Q ss_pred CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh-HHhhhCCcEEEEEeCCEEEEEcCccH-HHHHHhCCee
Q 020477 243 DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR-LLEFIKPTFIHIMEDGRIIKTGDASI-ATVLEEGGYK 320 (325)
Q Consensus 243 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~-~~~~~~~d~i~vl~~G~iv~~g~~~~-~~~~~~~~~~ 320 (325)
++|+|||||+|||+.+...+++.|++++++|+|||+++|+++ .+... +|++++|++|++++.|+++. .+.+++.|+.
T Consensus 186 ~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~-~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~ 264 (617)
T TIGR00955 186 PLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFEL-FDKIILMAEGRVAYLGSPDQAVPFFSDLGHP 264 (617)
T ss_pred CEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHH-hceEEEeeCCeEEEECCHHHHHHHHHHcCCC
Confidence 999999999999999999999999999877899999999985 55555 69999999999999999864 3445555543
No 338
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=9.1e-40 Score=334.99 Aligned_cols=242 Identities=21% Similarity=0.255 Sum_probs=182.1
Q ss_pred hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCC--------CCC-CC--------------CCCCCCCCcEEEEEEEE
Q 020477 29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPL--------KSS-SD--------------GQDEKSQPLLQVTGLTA 85 (325)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~~~-~~--------------~~~~~~~~~l~~~~ls~ 85 (325)
..|+..+......++....+..|+.++++.++... ... .. ........+++++||++
T Consensus 380 ~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~ 459 (659)
T TIGR00954 380 ADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPL 459 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEE
Confidence 45666677777889999999999988876432110 000 00 00111235799999999
Q ss_pred EECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCC
Q 020477 86 VIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSP 165 (325)
Q Consensus 86 ~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~ 165 (325)
.|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.+++ +..+++++|++
T Consensus 460 ~~~~-~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl--~~~~~G~i~~~~------------~~~i~~v~Q~~ 524 (659)
T TIGR00954 460 VTPN-GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL--WPVYGGRLTKPA------------KGKLFYVPQRP 524 (659)
T ss_pred ECCC-CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEeecC------------CCcEEEECCCC
Confidence 9964 35799999999999999999999999999999999998 788999998763 12488999999
Q ss_pred ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC--------CCCCChHHHHHHHHHHH
Q 020477 166 VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV--------NEGFSGGERKRNEILQL 237 (325)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~~LSgGqrQRv~iAra 237 (325)
.+++. ++.+++........ ....... .+.+.++++.+++. ++.+++. +..||||||||++||||
T Consensus 525 ~l~~~-tv~eni~~~~~~~~--~~~~~~~----~~~i~~~l~~~~l~-~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 525 YMTLG-TLRDQIIYPDSSED--MKRRGLS----DKDLEQILDNVQLT-HILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred CCCCc-CHHHHHhcCCChhh--hhccCCC----HHHHHHHHHHcCCH-HHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 88876 88888765321110 0001111 12355667777774 3333321 13599999999999999
Q ss_pred HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
|+++|++|||||||++||+.+++.+.+.+++. |.|+|+|||+++.+. . +|++++|+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~~~-~-~d~il~l~ 652 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSLWK-Y-HEYLLYMD 652 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHHHH-h-CCEEEEEe
Confidence 99999999999999999999999999999873 789999999999875 3 69999996
No 339
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=6.6e-40 Score=292.38 Aligned_cols=189 Identities=21% Similarity=0.248 Sum_probs=148.5
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE-ECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV-FKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~-~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|. ++|..+. +.+.+.+++.+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~~~sG~i~~~~~~~~~--------------~~~~~~l~~~l 64 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL--DAPDEGDFIGLRGDALP--------------LGANSFILPGL 64 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--ccCCCCCEEEecCceec--------------cccccccCCcC
Confidence 379999999999999999999999999999999998 679999997 7765321 12445577788
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID 251 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt 251 (325)
++.+++....... + ....+.. ..+.+.+++. ...++.+.. ||||||||++|||||+.+|+++||||||
T Consensus 65 tv~enl~~~~~~~----~---~~~~~~~---~~~~~~~~l~-~~~~~~~~~-lS~G~~qrv~la~al~~~p~llllDEP~ 132 (213)
T PRK15177 65 TGEENARMMASLY----G---LDGDEFS---HFCYQLTQLE-QCYTDRVSE-YSVTMKTHLAFAINLLLPCRLYIADGKL 132 (213)
T ss_pred cHHHHHHHHHHHc----C---CCHHHHH---HHHHHHhChh-HHhhchHhh-cCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 9888886643211 1 1112211 1223445554 345666654 9999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020477 252 SGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA 311 (325)
Q Consensus 252 sgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~ 311 (325)
+++|+.+++.+.+.|.+..+ +.|+|++|||++.+..+ ||++++|++|++++.++.+..
T Consensus 133 ~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 133 YTGDNATQLRMQAALACQLQ-QKGLIVLTHNPRLIKEH-CHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred ccCCHHHHHHHHHHHHHHhh-CCcEEEEECCHHHHHHh-cCeeEEEECCeEEEeCCHHHH
Confidence 99999999999998865433 35899999999998877 699999999999999887643
No 340
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.2e-39 Score=335.23 Aligned_cols=204 Identities=19% Similarity=0.309 Sum_probs=162.1
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||++.|++ ++.+|+|+||+|++|++++|+||||||||||+|+|+|+ .+|++|+|.+++.
T Consensus 506 ~~~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl--l~p~~G~I~~~~~----------- 571 (718)
T PLN03073 506 PPIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE--LQPSSGTVFRSAK----------- 571 (718)
T ss_pred CceEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCceEEECCc-----------
Confidence 468999999999963 34699999999999999999999999999999999998 6799999998652
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..++|++|++.. .++..++...... . .. +... ...+.++++.+++..+..++.+.. |||||||||+|
T Consensus 572 -~~igyv~Q~~~~--~l~~~~~~~~~~~-~--~~--~~~~----~~~i~~~L~~~gl~~~~~~~~~~~-LSgGqkqRvaL 638 (718)
T PLN03073 572 -VRMAVFSQHHVD--GLDLSSNPLLYMM-R--CF--PGVP----EQKLRAHLGSFGVTGNLALQPMYT-LSGGQKSRVAF 638 (718)
T ss_pred -eeEEEEeccccc--cCCcchhHHHHHH-H--hc--CCCC----HHHHHHHHHHCCCChHHhcCCccc-cCHHHHHHHHH
Confidence 247888998632 2222222111110 0 01 1111 134667899999964456677764 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCcc
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDAS 309 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~~ 309 (325)
||||+.+|++|||||||+|||+.+++.+.+.|.++ ++ |||+||||++++..+ ||++++|++|+++ ..|+.+
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~-~drv~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGS-VDELWVVSEGKVTPFHGTFH 710 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHh-CCEEEEEECCEEEEeCCCHH
Confidence 99999999999999999999999999999999876 34 999999999999887 6999999999998 567554
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.1e-40 Score=283.19 Aligned_cols=153 Identities=25% Similarity=0.327 Sum_probs=133.5
Q ss_pred EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEE
Q 020477 81 TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFM 160 (325)
Q Consensus 81 ~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 160 (325)
.||+++|++ +.+++++ |+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+ +++
T Consensus 4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~-------------i~~ 65 (177)
T cd03222 4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQ--LIPNGDNDEWDGIT-------------PVY 65 (177)
T ss_pred CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCCcEEEECCEE-------------EEE
Confidence 589999964 6788884 99999999999999999999999999998 68999999999863 445
Q ss_pred eccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHh
Q 020477 161 SFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL 240 (325)
Q Consensus 161 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~ 240 (325)
++|++ .||||||||++|||||+.
T Consensus 66 ~~q~~---------------------------------------------------------~LSgGq~qrv~laral~~ 88 (177)
T cd03222 66 KPQYI---------------------------------------------------------DLSGGELQRVAIAAALLR 88 (177)
T ss_pred EcccC---------------------------------------------------------CCCHHHHHHHHHHHHHhc
Confidence 44422 089999999999999999
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC-cEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE--cCcc
Q 020477 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPK-NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT--GDAS 309 (325)
Q Consensus 241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~--g~~~ 309 (325)
+|+++||||||++||+.+++.+.+.|.++++++ .|||++|||++++..+ ||++++|+++-.+.+ |.+.
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEcCCCccceeccCCc
Confidence 999999999999999999999999999987664 8999999999999877 699999988766644 5554
No 342
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=294.62 Aligned_cols=205 Identities=25% Similarity=0.313 Sum_probs=160.7
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcc
Q 020477 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN 172 (325)
Q Consensus 93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~ 172 (325)
.+++|+||+|++|++++++|+|||||||++|+|+|+ ..|++|.|.++|.+.........+..++++ .|...+...+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl--l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~-gqk~ql~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL--LLPTSGKVRVNGKDPFRRREEYLRSIGLVM-GQKLQLWWDLP 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc--cccCCCeEEecCcCcchhHHHHHHHHHHHh-hhhheeeeech
Confidence 489999999999999999999999999999999998 679999999999875442222233322221 24333332222
Q ss_pred hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCc
Q 020477 173 NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252 (325)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPts 252 (325)
..+-+..... ..++...++.++.....+.++++ .+++.++.. ||-|||.|+.||.||+++|+||+|||||-
T Consensus 115 ~~ds~~v~~~-------Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~-LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 115 ALDSLEVLKL-------IYEIPDDEFAERLDFLTEILDLE-GFLKWPVRK-LSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhHHHHHH-------HHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhh-ccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 2222111100 12234566777788888888886 466677764 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 253 GLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 253 gLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||...+..|.+.|+++.++ +.||+++||++..+... |+||++|+.|+++.+|+.+.
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~l-c~rv~~I~~Gqlv~dg~l~~ 243 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATL-CDRVLLIDQGQLVFDGTLAQ 243 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHh-hhheEEeeCCcEeecccHHH
Confidence 99999999999999999754 88999999999999998 69999999999999998654
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-39 Score=332.07 Aligned_cols=206 Identities=20% Similarity=0.351 Sum_probs=155.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+ .+|++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~--~~p~~G~I~~~~~~------------ 66 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE--VLLDDGRIIYEQDL------------ 66 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCeEEEeCCCC------------
Confidence 7999999999964 6799999999999999999999999999999999997 67999999998731
Q ss_pred cEEEeccCCccCCCcchHHHHH------------------------------HHHHHHhhhcCCCCCChHHHHHhHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLH------------------------------MAYNARRRKLGQPEIGPIEFYAYLYPKL 206 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (325)
.+++++|.+......++.+++. ...... ..+.. ....+...++.+++
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~l 143 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQ-EQLDH--HNLWQLENRINEVL 143 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HHHHh--cCcccHHHHHHHHH
Confidence 0223333321111111222110 000000 00000 00011234577889
Q ss_pred HhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020477 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL 286 (325)
Q Consensus 207 ~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~ 286 (325)
+.+++. .++.+.+ |||||||||+|||||+.+|+||||||||+|||+.+++++.++|+++. .|||+||||++++
T Consensus 144 ~~lgl~---~~~~~~~-LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l 216 (635)
T PRK11147 144 AQLGLD---PDAALSS-LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFI 216 (635)
T ss_pred HhCCCC---CCCchhh-cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHH
Confidence 999985 2566664 99999999999999999999999999999999999999999999883 4999999999999
Q ss_pred hhhCCcEEEEEeCCEEEE-EcCcc
Q 020477 287 EFIKPTFIHIMEDGRIIK-TGDAS 309 (325)
Q Consensus 287 ~~~~~d~i~vl~~G~iv~-~g~~~ 309 (325)
..+ ||+|++|++|+++. .|+.+
T Consensus 217 ~~~-~d~i~~L~~G~i~~~~g~~~ 239 (635)
T PRK11147 217 RNM-ATRIVDLDRGKLVSYPGNYD 239 (635)
T ss_pred HHh-cCeEEEEECCEEEEecCCHH
Confidence 887 69999999999974 46653
No 344
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-40 Score=277.38 Aligned_cols=224 Identities=24% Similarity=0.359 Sum_probs=173.2
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC-----EeCCCC
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG-----ENLLEM 148 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g-----~~i~~~ 148 (325)
..|.+++.++++.|+. ....++|||++.+||+.+|+|+||||||||++||++- +.|++|+|.+.- .++..+
T Consensus 3 ~~PLL~V~~lsk~Yg~--~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r--l~p~~G~v~Y~~r~~~~~dl~~m 78 (258)
T COG4107 3 DKPLLSVSGLSKLYGP--GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR--LTPDAGTVTYRMRDGQPRDLYTM 78 (258)
T ss_pred CCcceeehhhhhhhCC--CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc--cCCCCCeEEEEcCCCCchhHhhh
Confidence 3578999999999975 5689999999999999999999999999999999996 689999999865 233344
Q ss_pred CHHHHhh---ccEEEeccCCccCCCc--chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCC
Q 020477 149 EPEERSL---AGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG 223 (325)
Q Consensus 149 ~~~~~~~---~~i~~~~Q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 223 (325)
+..+++. -..+++.|+|.-=-.+ +.-.|+.. ... ..+... --.+.+.+.++++++.++....+..+. .
T Consensus 79 sEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGE--Rlm--a~G~RH--YG~iR~~a~~WL~~VEI~~~RiDD~Pr-t 151 (258)
T COG4107 79 SEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGE--RLM--AIGARH--YGNIRAEAQDWLEEVEIDLDRIDDLPR-T 151 (258)
T ss_pred chHHHHHHhhhccceeecCccccceeeeccCCccch--hHH--hhhhhh--hhhHHHHHHHHHHhcccCcccccCccc-c
Confidence 4444332 2467888998531111 11111100 000 000000 012334566789999997666666665 4
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
+||||+||+.|||-|+..|+++++||||.|||...+.+++++++.+..+ +.++++||||+..+... ++|..+|++|++
T Consensus 152 FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLl-a~rlmvmk~g~v 230 (258)
T COG4107 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL-ADRLMVMKQGQV 230 (258)
T ss_pred cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHh-hhcceeecCCCE
Confidence 9999999999999999999999999999999999999999999999765 88999999999988877 799999999999
Q ss_pred EEEcCcc
Q 020477 303 IKTGDAS 309 (325)
Q Consensus 303 v~~g~~~ 309 (325)
++.|-.+
T Consensus 231 ve~GLTD 237 (258)
T COG4107 231 VESGLTD 237 (258)
T ss_pred ecccccc
Confidence 9998654
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.8e-39 Score=356.10 Aligned_cols=253 Identities=21% Similarity=0.239 Sum_probs=190.2
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCC-CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDE-KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGE 106 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge 106 (325)
+..|+..+......+..+..+.+|+.+.+..++............ .....++++|+++.|++..+++|+|+||+|++||
T Consensus 586 l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~ 665 (1522)
T TIGR00957 586 LRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGA 665 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCC
Confidence 456677777778889999999999999886543321100000011 1123799999999997544679999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
+++|+||||||||||+++|+|+ ++|++|+|.++| .++|++|+|.+++ .|+.+|+.++..
T Consensus 666 ~v~IvG~~GsGKSTLl~~l~g~--~~~~~G~i~~~g--------------~i~yv~Q~~~l~~-~Ti~eNI~~g~~---- 724 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLSALLAE--MDKVEGHVHMKG--------------SVAYVPQQAWIQN-DSLRENILFGKA---- 724 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CccCCcEEEECC--------------EEEEEcCCccccC-CcHHHHhhcCCc----
Confidence 9999999999999999999998 789999999987 2789999998765 588888765421
Q ss_pred hcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020477 187 KLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~ 261 (325)
...++..+. +.+.++.+..+.+..-...+.+||||||||++||||++.+|+++||||||++||+.+++.
T Consensus 725 ------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~ 798 (1522)
T TIGR00957 725 ------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 798 (1522)
T ss_pred ------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence 011111111 112233332221111122234699999999999999999999999999999999999999
Q ss_pred HHHHHHhcc--CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 262 VAKAVNGLL--TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 262 i~~~L~~l~--~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+.+.+.+.. .+++|+|+|||+++.+.. +|+|++|++|++++.|+.+
T Consensus 799 i~~~l~~~~~~~~~~tvIlvTH~~~~l~~--~D~ii~l~~G~i~~~g~~~ 846 (1522)
T TIGR00957 799 IFEHVIGPEGVLKNKTRILVTHGISYLPQ--VDVIIVMSGGKISEMGSYQ 846 (1522)
T ss_pred HHHHHhhhhhhhcCCEEEEEeCChhhhhh--CCEEEEecCCeEEeeCCHH
Confidence 999997531 246899999999998865 6999999999999999764
No 346
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-39 Score=356.07 Aligned_cols=251 Identities=21% Similarity=0.236 Sum_probs=188.2
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCC
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGE 106 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge 106 (325)
+..|+..+......+..+..+.+|+.+.+..++....... ......+.++++|++|+|+.. ++++|+|+||+|++||
T Consensus 567 l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge 644 (1622)
T PLN03130 567 LRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGS 644 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCC
Confidence 3456667777788899999999999998864433211110 011123469999999999742 3579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCc-cEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTE-GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR 185 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~-G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~ 185 (325)
.++|+||+|||||||+++|+|. ++|++ |+|.+.| .++|++|+|.+|.+ |+.+|+.++..
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~--~~~~~GG~I~l~~--------------~Iayv~Q~p~Lfng-TIreNI~fg~~--- 704 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGE--LPPRSDASVVIRG--------------TVAYVPQVSWIFNA-TVRDNILFGSP--- 704 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHh--hccCCCceEEEcC--------------eEEEEcCccccCCC-CHHHHHhCCCc---
Confidence 9999999999999999999998 78899 8998643 38899999999875 88898865421
Q ss_pred hhcCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHH
Q 020477 186 RKLGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260 (325)
Q Consensus 186 ~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~ 260 (325)
.++++..+ .+.+.++.+..+.+..-..-+.+|||||||||+||||++++|+|+|||||||+||+.+.+
T Consensus 705 -------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~ 777 (1622)
T PLN03130 705 -------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR 777 (1622)
T ss_pred -------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHH
Confidence 11111111 122234444332222222223469999999999999999999999999999999999998
Q ss_pred HHHH-HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 261 DVAK-AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 261 ~i~~-~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
.+.+ .+..+. +++|+|+|||++..+.. +|+|++|++|++++.|+.+.
T Consensus 778 ~I~~~~l~~~l-~~kTvIlVTH~l~~l~~--aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 778 QVFDKCIKDEL-RGKTRVLVTNQLHFLSQ--VDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHhhHHh-cCCEEEEEECCHhHHHh--CCEEEEEeCCEEEEeCCHHH
Confidence 8864 555543 46899999999988765 69999999999999998653
No 347
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.7e-39 Score=349.50 Aligned_cols=234 Identities=22% Similarity=0.261 Sum_probs=187.2
Q ss_pred cEEEEEEEEEECC-----------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020477 77 LLQVTGLTAVIAE-----------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145 (325)
Q Consensus 77 ~l~~~~ls~~y~~-----------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i 145 (325)
.++++||++.++. +.+.+|+|+|++|++|++++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998741 23469999999999999999999999999999999999732124789999999875
Q ss_pred CCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCC----
Q 020477 146 LEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN---- 221 (325)
Q Consensus 146 ~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 221 (325)
.. ... +..++|++|++.+++.+|+.+++.+....+ .. .....++..+.++++++.+++. +..++.++
T Consensus 947 ~~---~~~-~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr---~~-~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~ 1017 (1470)
T PLN03140 947 KQ---ETF-ARISGYCEQNDIHSPQVTVRESLIYSAFLR---LP-KEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGV 1017 (1470)
T ss_pred Ch---HHh-hhheEEEccccccCCCCcHHHHHHHHHHhC---CC-CCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCC
Confidence 32 122 234789999998999999999987653221 11 1122334445688899999996 45666653
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH-HhhhCCcEEEEEeC-
Q 020477 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMED- 299 (325)
Q Consensus 222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~-~~~~~~d~i~vl~~- 299 (325)
.+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++. +... +|++++|++
T Consensus 1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~-~D~vllL~~g 1096 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRG 1096 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHh-CCEEEEEcCC
Confidence 3599999999999999999999999999999999999999999999998788999999999984 5555 699999986
Q ss_pred CEEEEEcCc-----cHHHHHHhC-Cee
Q 020477 300 GRIIKTGDA-----SIATVLEEG-GYK 320 (325)
Q Consensus 300 G~iv~~g~~-----~~~~~~~~~-~~~ 320 (325)
|++++.|+. +..+.++.. |+.
T Consensus 1097 G~~v~~G~~~~~~~~~~~yF~~~~g~~ 1123 (1470)
T PLN03140 1097 GQVIYSGPLGRNSHKIIEYFEAIPGVP 1123 (1470)
T ss_pred CEEEEECCcccccccHHHHHHhcCCCC
Confidence 899999985 345667773 543
No 348
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-39 Score=354.95 Aligned_cols=251 Identities=18% Similarity=0.225 Sum_probs=186.2
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCC
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGE 106 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge 106 (325)
+..|+..+......+..+..+.+|+.+++..++....... ........++++|++|+|+.. ++++|+|+||+|++||
T Consensus 567 l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge 644 (1495)
T PLN03232 567 LRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGS 644 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCC
Confidence 4456777777788899999999999998865433211110 011123469999999999742 3579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
.++|+||+|||||||+++|+|+ ++|++|.+.. + +..++|++|+|.+|.+ |..+|+.++..
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~--~~~~~G~i~~----~---------~~~Iayv~Q~p~Lf~g-TIreNI~fg~~---- 704 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGE--LSHAETSSVV----I---------RGSVAYVPQVSWIFNA-TVRENILFGSD---- 704 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CcccCCCEEE----e---------cCcEEEEcCccccccc-cHHHHhhcCCc----
Confidence 9999999999999999999998 7888886631 1 1248899999999875 88888865421
Q ss_pred hcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020477 187 KLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~ 261 (325)
.++++..+. +.+.++.+..+.+..-..-+.+||||||||++||||++++|+|+|||||||+||+.+.+.
T Consensus 705 ------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~ 778 (1495)
T PLN03232 705 ------FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQ 778 (1495)
T ss_pred ------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence 112222111 112233332221222222234699999999999999999999999999999999999998
Q ss_pred HHHH-HHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 262 VAKA-VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 262 i~~~-L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+.+. +..+. +++|+|+|||+++.+.. +|+|++|++|++++.|+.+
T Consensus 779 I~~~~l~~~l-~~kT~IlvTH~~~~l~~--aD~Ii~L~~G~i~~~Gt~~ 824 (1495)
T PLN03232 779 VFDSCMKDEL-KGKTRVLVTNQLHFLPL--MDRIILVSEGMIKEEGTFA 824 (1495)
T ss_pred HHHHHhhhhh-cCCEEEEEECChhhHHh--CCEEEEEeCCEEEEecCHH
Confidence 8765 55443 56899999999988764 6999999999999999765
No 349
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.9e-39 Score=321.60 Aligned_cols=210 Identities=25% Similarity=0.399 Sum_probs=168.7
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+|+++|+++.|+ ++++|+++||+|.+|+++||||+||||||||||+|+|. ..|++|+|.+.+.
T Consensus 2 ~~i~~~~ls~~~g--~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~--~~~~~G~i~~~~~------------ 65 (530)
T COG0488 2 SMITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE--LEPDSGEVTRPKG------------ 65 (530)
T ss_pred ceEEEeeeEEeeC--CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCC--CcCCCCeEeecCC------------
Confidence 4799999999995 47899999999999999999999999999999999997 6799999988652
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhh----------cCCC-------------CCChHHHHHhHHHHHHhcCCc
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK----------LGQP-------------EIGPIEFYAYLYPKLERLSMK 212 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-------------~~~~~~~~~~~~~~l~~~~l~ 212 (325)
..++++.|++......++.+.+.......... .... +....+...++..++..+|+.
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 23788999998888778777665443211000 0000 000011224566778888886
Q ss_pred cccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCc
Q 020477 213 TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT 292 (325)
Q Consensus 213 ~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d 292 (325)
.. ++++.+ ||||||.||+||+||+.+|++|||||||++||.++..++.+.|+++. | |||+||||..++..+ |+
T Consensus 146 ~~--~~~~~~-LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~--g-tviiVSHDR~FLd~V-~t 218 (530)
T COG0488 146 DE--DRPVSS-LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--G-TVIVVSHDRYFLDNV-AT 218 (530)
T ss_pred cc--cCchhh-cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC--C-cEEEEeCCHHHHHHH-hh
Confidence 43 677764 99999999999999999999999999999999999999999999763 5 999999999999998 69
Q ss_pred EEEEEeCCEEEEE-cCc
Q 020477 293 FIHIMEDGRIIKT-GDA 308 (325)
Q Consensus 293 ~i~vl~~G~iv~~-g~~ 308 (325)
+|+-++.|++... |+.
T Consensus 219 ~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 219 HILELDRGKLTPYKGNY 235 (530)
T ss_pred heEEecCCceeEecCCH
Confidence 9999999988654 544
No 350
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-39 Score=271.70 Aligned_cols=156 Identities=29% Similarity=0.478 Sum_probs=135.7
Q ss_pred EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEE
Q 020477 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF 159 (325)
Q Consensus 80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 159 (325)
++|+++.|++ +.+++++||+|++|++++|+|+||||||||+++|+|+ ++|++|+|+++|.++........ ...++
T Consensus 2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~--~~~~~G~i~~~~~~~~~~~~~~~-~~~i~ 76 (157)
T cd00267 2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL--LKPTSGEILIDGKDIAKLPLEEL-RRRIG 76 (157)
T ss_pred eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEEcccCCHHHH-HhceE
Confidence 6899999964 4799999999999999999999999999999999998 67899999999987754322221 12244
Q ss_pred EeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH
Q 020477 160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV 239 (325)
Q Consensus 160 ~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~ 239 (325)
+++| |||||+||++||||++
T Consensus 77 ~~~q------------------------------------------------------------lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 77 YVPQ------------------------------------------------------------LSGGQRQRVALARALL 96 (157)
T ss_pred EEee------------------------------------------------------------CCHHHHHHHHHHHHHh
Confidence 4433 8999999999999999
Q ss_pred hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
.+|+++||||||++||..++..+.+.|.++.+.+.|+|++||+++++..+ +|++++|++|+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l~~g~ 157 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVLKDGK 157 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEeCcC
Confidence 99999999999999999999999999999876678999999999999886 69999998874
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.1e-38 Score=275.96 Aligned_cols=158 Identities=22% Similarity=0.281 Sum_probs=128.0
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020477 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG 170 (325)
Q Consensus 91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~ 170 (325)
.+++|+|+||+|++|++++|+||||||||||+|++.+ ++|++.++|.. ... .+ ..+++++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~-~~~---~~--~~~~~~~q------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFL-PKF---SR--NKLIFIDQ------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcc-ccc---cc--ccEEEEhH-------
Confidence 4679999999999999999999999999999999853 58999998752 111 11 12444443
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhC--CCEEEEe
Q 020477 171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG--ADLAILD 248 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~--p~lLlLD 248 (325)
.+.++.+++....+++.+. .||||||||++|||||+.+ |++||||
T Consensus 68 --------------------------------~~~l~~~~L~~~~~~~~~~-~LSgGq~qrl~laral~~~~~p~llLlD 114 (176)
T cd03238 68 --------------------------------LQFLIDVGLGYLTLGQKLS-TLSGGELQRVKLASELFSEPPGTLFILD 114 (176)
T ss_pred --------------------------------HHHHHHcCCCccccCCCcC-cCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 1235666764323566665 4999999999999999999 9999999
Q ss_pred CcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 249 EIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 249 EPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
|||++||+.+++.+.+.|+++.+.|.|||+|||+++++. . +|++++|++|+.
T Consensus 115 EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~-~d~i~~l~~g~~ 166 (176)
T cd03238 115 EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-S-ADWIIDFGPGSG 166 (176)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEECCCCC
Confidence 999999999999999999998767899999999999874 4 799999976544
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.9e-38 Score=346.41 Aligned_cols=225 Identities=22% Similarity=0.288 Sum_probs=176.6
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC--CCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD--YEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIP 169 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~--~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~ 169 (325)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.. ..|++|+|.++|+++.... ...+..+++++|++.+++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~--~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK--KHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH--hhcCceeEEeccccccCC
Confidence 569999999999999999999999999999999999731 2478999999999875432 112235889999999999
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCChHHHHHh-HHHHHHhcCCccccccccCC----CCCChHHHHHHHHHHHHHhCCCE
Q 020477 170 GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY-LYPKLERLSMKTDFLNRNVN----EGFSGGERKRNEILQLAVLGADL 244 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~----~~LSgGqrQRv~iAraL~~~p~l 244 (325)
.+|+.+++.+....+...........++..++ .+++++.+|+. +..++.++ .+|||||||||+||++|+.+|+|
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-cccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 99999998775432210000001222332233 35578999996 45554432 35999999999999999999999
Q ss_pred EEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCCh-hHHhhhCCcEEEEEeCCEEEEEcCccH-HHHHHhCCee
Q 020477 245 AILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYR-RLLEFIKPTFIHIMEDGRIIKTGDASI-ATVLEEGGYK 320 (325)
Q Consensus 245 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~-~~~~~~~~d~i~vl~~G~iv~~g~~~~-~~~~~~~~~~ 320 (325)
|+|||||+|||+.++..+++.|++++++ |+|||+++|++ +.+... +|++++|++|++++.|+++. .+.+++.|+.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l-~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~ 308 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYEL-FDKVIVLYEGYQIYFGPADKAKQYFEKMGFK 308 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-hceEEEEeCCeEEEECCHHHHHHHHHHcCCC
Confidence 9999999999999999999999999864 89999999996 566666 69999999999999998864 4567777764
No 353
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.6e-38 Score=333.16 Aligned_cols=259 Identities=19% Similarity=0.240 Sum_probs=200.2
Q ss_pred hhhhhhhhccHHHHHHHhhccCCCCCCCCCC-CC--CCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCC
Q 020477 39 RSNYHRHHLSLNRVTAALSAVDSPLKSSSDG-QD--EKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNG 115 (325)
Q Consensus 39 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~--~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NG 115 (325)
.........+++|+.+..+.++++....... +. =+....|+++|++.+|..+...+|+||||+|++||.+||||..|
T Consensus 1097 ~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTG 1176 (1381)
T KOG0054|consen 1097 SSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTG 1176 (1381)
T ss_pred HHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCC
Confidence 3456777888999998888666622221111 11 13456899999999998766789999999999999999999999
Q ss_pred ccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCCh
Q 020477 116 SGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195 (325)
Q Consensus 116 sGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (325)
||||||+++|.++ ..|.+|+|.+||.|+.++..+++|. .+..+||+|.+|.+ |++.|+... .+.++
T Consensus 1177 aGKSSL~~aLFRl--~e~~~G~I~IDgvdI~~igL~dLRs-rlsIIPQdPvLFsG-TvR~NLDPf----------~e~sD 1242 (1381)
T KOG0054|consen 1177 AGKSSLILALFRL--VEPAEGEILIDGVDISKIGLHDLRS-RLSIIPQDPVLFSG-TVRFNLDPF----------DEYSD 1242 (1381)
T ss_pred CCHHHHHHHHHHh--cCccCCeEEEcCeecccccHHHHHh-cCeeeCCCCceecC-ccccccCcc----------cccCH
Confidence 9999999999998 6789999999999999999887654 37788999999987 444443221 12233
Q ss_pred HHHHHhH-----HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc
Q 020477 196 IEFYAYL-----YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270 (325)
Q Consensus 196 ~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~ 270 (325)
++.++.+ .+.++.++.+-+..-.+-|+++|-||||.++|||||+++.+||+|||+||++|+++-..|.+.|++--
T Consensus 1243 ~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F 1322 (1381)
T KOG0054|consen 1243 DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF 1322 (1381)
T ss_pred HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh
Confidence 4444332 22333332221222233355799999999999999999999999999999999999999999999865
Q ss_pred CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHh
Q 020477 271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE 316 (325)
Q Consensus 271 ~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~ 316 (325)
+ ++|||.|.|+++.+.. +|||+||++|++++.|+|. +++++
T Consensus 1323 ~-dcTVltIAHRl~TVmd--~DrVlVld~G~v~EfdsP~--~Ll~~ 1363 (1381)
T KOG0054|consen 1323 K-DCTVLTIAHRLNTVMD--SDRVLVLDAGRVVEFDSPA--ELLSD 1363 (1381)
T ss_pred c-CCeEEEEeeccchhhh--cCeEEEeeCCeEeecCChH--HHHhC
Confidence 4 5799999999887765 6999999999999999986 44544
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.9e-37 Score=340.84 Aligned_cols=248 Identities=19% Similarity=0.253 Sum_probs=187.2
Q ss_pred hch-HhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC------------------
Q 020477 30 LPA-LPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES------------------ 90 (325)
Q Consensus 30 ~~~-~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~------------------ 90 (325)
.|+ ..+......+.++..+.+|+.+.+...+..... . ......++++|+++.|+..
T Consensus 349 ~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~--~---~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 423 (1490)
T TIGR01271 349 MTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE--Y---NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQP 423 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--c---cCCCCceEEecceEecCCccccccccccccccccccc
Confidence 354 367778888999999999999988654332111 0 0112247888888888421
Q ss_pred --------------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 91 --------------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 91 --------------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
.+++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|
T Consensus 424 ~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~--~~~~~G~i~~~g-------------- 487 (1490)
T TIGR01271 424 NGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE--LEPSEGKIKHSG-------------- 487 (1490)
T ss_pred cccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECC--------------
Confidence 13589999999999999999999999999999999998 789999999987
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH--HhHHHHHHhcCCcccc-ccccCCCCCChHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY--AYLYPKLERLSMKTDF-LNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~-~~~~~~~~LSgGqrQRv~ 233 (325)
.++|++|+|.+++. |+.+|+.++...... ...+.. ..+.+.++.+...... .... +..|||||||||+
T Consensus 488 ~iayv~Q~~~l~~~-Ti~eNI~~g~~~~~~-------~~~~~~~~~~L~~~l~~l~~g~~t~vg~~-g~~LSgGqkqRi~ 558 (1490)
T TIGR01271 488 RISFSPQTSWIMPG-TIKDNIIFGLSYDEY-------RYTSVIKACQLEEDIALFPEKDKTVLGEG-GITLSGGQRARIS 558 (1490)
T ss_pred EEEEEeCCCccCCc-cHHHHHHhccccchH-------HHHHHHHHHhHHHHHHhccccccccccCc-CCCcCHHHHHHHH
Confidence 27899999998875 999998754211000 000111 1233445554433221 1222 3469999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHH-HHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKA-VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||++.+|+++||||||++||+.+++.+++. +..+. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+.
T Consensus 559 lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~--ad~ii~l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 559 LARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKK--ADKILLLHEGVCYFYGTFSE 633 (1490)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHh--CCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999985 56664 47899999999998864 69999999999999998654
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.1e-38 Score=322.51 Aligned_cols=195 Identities=26% Similarity=0.339 Sum_probs=155.1
Q ss_pred EEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE-----------ECCEeCCCCCH
Q 020477 82 GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV-----------FKGENLLEMEP 150 (325)
Q Consensus 82 ~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~-----------~~g~~i~~~~~ 150 (325)
+++++|+. ...+|++++ .+++||++||+||||||||||+|+|+|+ ++|++|+|. ++|+++..+..
T Consensus 78 ~~~~~yg~-~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~--l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 78 EPVHRYGV-NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGE--LIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred CceEEecC-CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCC--ccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 48899974 346999999 9999999999999999999999999998 689999998 88988754321
Q ss_pred HHH-hhccEEEeccCCccCCC---cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020477 151 EER-SLAGLFMSFQSPVEIPG---VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG 226 (325)
Q Consensus 151 ~~~-~~~~i~~~~Q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 226 (325)
... ....+++.+|....++. .++.+++.. .+....+.++++.+++. +.+++.+.+ |||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~----------------~~~~~~~~~~l~~l~l~-~~~~~~~~~-LSg 215 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKK----------------VDERGKLDEVVERLGLE-NILDRDISE-LSG 215 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHh----------------hhHHHHHHHHHHHcCCc-hhhcCChhh-CCH
Confidence 111 11234555554433222 155544321 01224567788999996 567888875 999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
||||||+||+||+.+|++|||||||++||+.++.++.+.|+++++ |.|||+||||++++..+ +|++++|+++
T Consensus 216 Ge~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~-~D~v~vl~~~ 287 (590)
T PRK13409 216 GELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYL-ADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHh-CCEEEEEeCC
Confidence 999999999999999999999999999999999999999999987 89999999999999887 6999999763
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.6e-37 Score=319.48 Aligned_cols=226 Identities=16% Similarity=0.200 Sum_probs=160.4
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CCCCccEEEECCEeCCCC--CH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLEM--EP 150 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~p~~G~I~~~g~~i~~~--~~ 150 (325)
...+|+++|++++|++ +.+|+|+||+|.+|+++||||+||||||||+|+|+|... ..|.+|+|.+.++.+... +.
T Consensus 174 ~~~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~ 251 (718)
T PLN03073 174 AIKDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTA 251 (718)
T ss_pred CceeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCH
Confidence 4558999999999964 569999999999999999999999999999999999521 147889998765543211 11
Q ss_pred H--------HH---hhccEEEeccCCccCCC-c------------chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHH
Q 020477 151 E--------ER---SLAGLFMSFQSPVEIPG-V------------NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206 (325)
Q Consensus 151 ~--------~~---~~~~i~~~~Q~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (325)
. .+ ....+++++|++.+... . ...+........ ...+...+ ......++.+++
T Consensus 252 ~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~--~~~~~~r~~~~L 328 (718)
T PLN03073 252 LQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEI-YKRLELID--AYTAEARAASIL 328 (718)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHH-HHHHHhcC--cchHHHHHHHHH
Confidence 0 00 01113344554432110 0 000000000000 00000000 112235567788
Q ss_pred HhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020477 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL 286 (325)
Q Consensus 207 ~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~ 286 (325)
..+|+..+..++.+.+ |||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++
T Consensus 329 ~~lgl~~~~~~~~~~~-LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l 404 (718)
T PLN03073 329 AGLSFTPEMQVKATKT-FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFL 404 (718)
T ss_pred HHCCCChHHHhCchhh-CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHH
Confidence 9999864556677764 9999999999999999999999999999999999999999999987 57999999999999
Q ss_pred hhhCCcEEEEEeCCEEE-EEcCcc
Q 020477 287 EFIKPTFIHIMEDGRII-KTGDAS 309 (325)
Q Consensus 287 ~~~~~d~i~vl~~G~iv-~~g~~~ 309 (325)
..+ ||+|++|++|+++ +.|+.+
T Consensus 405 ~~~-~d~i~~l~~g~i~~~~g~~~ 427 (718)
T PLN03073 405 NTV-VTDILHLHGQKLVTYKGDYD 427 (718)
T ss_pred HHh-CCEEEEEECCEEEEeCCCHH
Confidence 887 6999999999996 566543
No 357
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-37 Score=311.67 Aligned_cols=235 Identities=23% Similarity=0.273 Sum_probs=193.6
Q ss_pred CcEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-CCCccEEEECCEeCCCCCHH
Q 020477 76 PLLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-EVTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~ 151 (325)
..+.++|+++...+. .+++|+|||..+++||+.||+||+|||||||+++|+|.... ...+|+|.+||+.... +
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~---~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS---R 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch---h
Confidence 358889999887654 37899999999999999999999999999999999996321 2578999999965432 2
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCC----CCCChH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN----EGFSGG 227 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG 227 (325)
.. +...+||.|+..+++.+||.|.+......+. + .....++...+++++++.+|+. +..++.++ .++|||
T Consensus 101 ~~-~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrl---p-~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 101 SF-RKISGYVQQDDVLLPTLTVRETLRFSALLRL---P-SSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGG 174 (613)
T ss_pred hh-hheeEEEcccccccccccHHHHHHHHHHhcC---C-CCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccc
Confidence 22 2347899999999999999999877654431 1 1234567778899999999997 66677665 259999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH-HhhhCCcEEEEEeCCEEEEEc
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~-~~~~~~d~i~vl~~G~iv~~g 306 (325)
||+||+||.-|+++|.||+|||||+|||..+..++++.|++++++|+|||++-|.+.. +-.. .|++++|.+|++++.|
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~l-FD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFEL-FDKLLLLSEGEVVYSG 253 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHH-HhHhhhhcCCcEEEec
Confidence 9999999999999999999999999999999999999999999889999999999753 3333 4899999999999999
Q ss_pred CccH-HHHHHhCCee
Q 020477 307 DASI-ATVLEEGGYK 320 (325)
Q Consensus 307 ~~~~-~~~~~~~~~~ 320 (325)
++.. .+.++..|+.
T Consensus 254 ~~~~~~~ff~~~G~~ 268 (613)
T KOG0061|consen 254 SPRELLEFFSSLGFP 268 (613)
T ss_pred CHHHHHHHHHhCCCC
Confidence 9864 4667777764
No 358
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7e-37 Score=270.62 Aligned_cols=195 Identities=23% Similarity=0.299 Sum_probs=163.5
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
..+|+||||++++||.+||+|+||||||||+|+|+|. ++|++|+|.++|+-..-+ ..+.++ | +.+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi--~~Pt~G~v~v~G~v~~li------~lg~Gf--~-----pel 104 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI--YKPTSGKVKVTGKVAPLI------ELGAGF--D-----PEL 104 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc--cCCCCceEEEcceEehhh------hcccCC--C-----ccc
Confidence 4699999999999999999999999999999999998 899999999999742111 122332 2 446
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID 251 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt 251 (325)
|..+|+.+.... .+ .+.++..++++++++.-.+. ++.+.++.. +|.||+-|+++|.|...+|++||+||-.
T Consensus 105 TGreNi~l~~~~----~G---~~~~ei~~~~~eIieFaELG-~fi~~Pvkt-YSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 105 TGRENIYLRGLI----LG---LTRKEIDEKVDEIIEFAELG-DFIDQPVKT-YSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred chHHHHHHHHHH----hC---ccHHHHHHHHHHHHHHHHHH-HHhhCchhh-ccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 777777553221 12 23556667778888877776 688888865 9999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020477 252 SGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA 311 (325)
Q Consensus 252 sgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~ 311 (325)
+-.|+.-++.-.+.+.++.+++.|||+||||++.+..+ ||++++|++|++...|+++..
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~-Cd~~i~l~~G~i~~~G~~~~v 234 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQY-CDRAIWLEHGQIRMEGSPEEV 234 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHh-cCeeEEEeCCEEEEcCCHHHH
Confidence 99999999999999999977779999999999999998 699999999999999998753
No 359
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=253.92 Aligned_cols=204 Identities=22% Similarity=0.240 Sum_probs=165.2
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-CCCccEEEECCEeCCCCCHHHHhh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-EVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++.++||+.+.++ .-.|.++||+|.+||++.|+||||||||||+..+.|.+.- -..+|++.++++++..++..+|
T Consensus 2 ~l~l~nvsl~l~g--~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR-- 77 (213)
T COG4136 2 MLCLKNVSLRLPG--SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR-- 77 (213)
T ss_pred ceeeeeeeecCCC--ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh--
Confidence 6889999987764 6789999999999999999999999999999999996311 1348999999999988876544
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
.+++.||++.+|+.+++.+|+.+..... ......+..+..++++.++. .+.++.+. +||||||-||++-
T Consensus 78 -q~GiLFQD~lLFphlsVg~Nl~fAlp~~--------~KG~aRr~~a~aAL~~~gL~-g~f~~dP~-tlSGGQrARvaL~ 146 (213)
T COG4136 78 -QIGILFQDALLFPHLSVGQNLLFALPAT--------LKGNARRNAANAALERSGLD-GAFHQDPA-TLSGGQRARVALL 146 (213)
T ss_pred -heeeeecccccccccccccceEEecCcc--------cccHHHHhhHHHHHHHhccc-hhhhcChh-hcCcchHHHHHHH
Confidence 3778899999999999988876543221 11223345567789999996 56777776 4999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhc-cCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL-LTPKNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
|+|+.+|+.++||||+|.||..-+.++.+.+..- ...|...|+||||.+.+.. ..||+-|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpa--gsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPA--GSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC--CCeeeee
Confidence 9999999999999999999999999998877554 4458888999999887762 3555433
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.2e-37 Score=333.62 Aligned_cols=221 Identities=21% Similarity=0.273 Sum_probs=173.6
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC---ccEEEECCEeCCCCCHHHHhhccEEEeccCCccC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT---EGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEI 168 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~ 168 (325)
+.+|+|+|+.|++||+++|+||||||||||||+|+|+ .+|+ +|+|.++|+++..... +..++|++|++.++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~--l~~~~~~~G~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 251 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGK--LDPSLKVSGEITYNGYRLNEFVP----RKTSAYISQNDVHV 251 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC--CCCCCcceeEEEECCEechhhcc----cceeEEecccccCC
Confidence 4699999999999999999999999999999999997 5676 9999999998754321 23588999999999
Q ss_pred CCcchHHHHHHHHHHHhhhcC--C-CCCChH----------H--------------HHHhHHHHHHhcCCccccc-----
Q 020477 169 PGVNNIDFLHMAYNARRRKLG--Q-PEIGPI----------E--------------FYAYLYPKLERLSMKTDFL----- 216 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~----------~--------------~~~~~~~~l~~~~l~~~~~----- 216 (325)
+.+|+.+++.+....+..... . .+.... + ....++.+++.+|+. +..
T Consensus 252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~-~~~~t~vg 330 (1470)
T PLN03140 252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLD-ICKDTIVG 330 (1470)
T ss_pred CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCc-cccCceeC
Confidence 999999998876432210000 0 000000 0 001245678899995 333
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCCh-hHHhhhCCcEE
Q 020477 217 NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYR-RLLEFIKPTFI 294 (325)
Q Consensus 217 ~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~-~~~~~~~~d~i 294 (325)
++.+. +|||||||||+||++|+.+|++|+|||||+|||+.+..++.+.|+++++ .|+|||+++|++ ..+..+ +|+|
T Consensus 331 ~~~~r-glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~l-fD~v 408 (1470)
T PLN03140 331 DEMIR-GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDL-FDDI 408 (1470)
T ss_pred Ccccc-CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHH-hheE
Confidence 33333 5999999999999999999999999999999999999999999999975 488999999986 466666 6999
Q ss_pred EEEeCCEEEEEcCccH-HHHHHhCCeec
Q 020477 295 HIMEDGRIIKTGDASI-ATVLEEGGYKA 321 (325)
Q Consensus 295 ~vl~~G~iv~~g~~~~-~~~~~~~~~~~ 321 (325)
++|++|++++.|+.+. .+.++..|+++
T Consensus 409 ilL~~G~ivy~G~~~~~~~yF~~lGf~c 436 (1470)
T PLN03140 409 ILLSEGQIVYQGPRDHILEFFESCGFKC 436 (1470)
T ss_pred EEeeCceEEEeCCHHHHHHHHHHcCCCC
Confidence 9999999999999764 45677777653
No 361
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=320.56 Aligned_cols=231 Identities=22% Similarity=0.290 Sum_probs=199.1
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
..+.++|+++.|+.... +++++||.|++||+.|++|+|||||||++++|.|. .+|++|++.++|.++..........
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~--~~~t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE--TKPTSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCC--ccCCcceEEEecCccccccchhhhh
Confidence 57899999999975332 99999999999999999999999999999999997 7899999999999987655444445
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..+||.||...+++.+|..|.+......+ +. ...+..+.++..++.+++. +..++..+. +|||+|+|+++|
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlr----G~---~~~di~~~v~~ll~~~~L~-~~~~~~~~~-ySgG~kRkLs~a 710 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLR----GL---PRSDIGSAIEKLLRLVGLG-PYANKQVRT-YSGGNKRRLSFA 710 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHc----CC---ChhHHHHHHHHHHHHcCCh-hhhccchhh-CCCcchhhHHHH
Confidence 56899999999999999999887764432 21 2334556678889999996 567888765 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLE 315 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~ 315 (325)
.|++.+|++++|||||+|+||.+++.+++++.+++++|+.||++||.+++++.. |||+.+|.+|++...|++++.+..-
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaL-CtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEAL-CTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHH-hhhhheeecCeeEEecChHHHHhhc
Confidence 999999999999999999999999999999999988777999999999999998 6999999999999999998876444
Q ss_pred hCCe
Q 020477 316 EGGY 319 (325)
Q Consensus 316 ~~~~ 319 (325)
-+||
T Consensus 790 G~gy 793 (885)
T KOG0059|consen 790 GSGY 793 (885)
T ss_pred CCcE
Confidence 4443
No 362
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-35 Score=327.28 Aligned_cols=192 Identities=22% Similarity=0.318 Sum_probs=148.1
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
+++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.+. ..++|++|+|.++. .
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~--~~~~~G~i~~~--------------~~i~yv~Q~~~l~~-~ 735 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ--FEISEGRVWAE--------------RSIAYVPQQAWIMN-A 735 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEEC--------------CeEEEEeCCCccCC-C
Confidence 5689999999999999999999999999999999998 68999999863 23889999998765 5
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc--CCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeC
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL--SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDE 249 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDE 249 (325)
|+.+|+.+......... ........+.+.++.+ |+.. ..+... .+|||||||||+|||||+.+|++|||||
T Consensus 736 Tv~enI~~~~~~~~~~~-----~~~~~~~~l~~~l~~l~~g~~t-~i~~~g-~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 736 TVRGNILFFDEEDAARL-----ADAVRVSQLEADLAQLGGGLET-EIGEKG-VNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred cHHHHHHcCChhhHHHH-----HHHHHHhhhHHHHHHhhccchH-HhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 88888765321100000 0000011234455666 4432 233443 4599999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHH-HhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 250 IDSGLDVDALRDVAKAV-NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 250 PtsgLD~~~~~~i~~~L-~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||++||+.+.+.+++.+ .... +|+|+|+||||++.+.. +|+|++|++|++++.|+.+.
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~~--ad~ii~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVVPR--ADYVVALGDGRVEFSGSSAD 867 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHHh--CCEEEEEECCEEEEecCHHH
Confidence 99999999999888744 3322 47899999999998863 69999999999999998653
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=294.26 Aligned_cols=202 Identities=24% Similarity=0.351 Sum_probs=165.3
Q ss_pred CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
...++++++|+++.|+++ +.+++++||.|.+|+.+||+||||+|||||+|+|+|. ..|.+|+|.+.-.
T Consensus 317 ~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~--~~~~~G~v~~g~~--------- 384 (530)
T COG0488 317 LGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE--LGPLSGTVKVGET--------- 384 (530)
T ss_pred CCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh--cccCCceEEeCCc---------
Confidence 346789999999999653 6899999999999999999999999999999999996 5788999988532
Q ss_pred HhhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 153 RSLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
..++|..|+.. +.+..++.+++.... +... ...+...|.++++..+...+++.. ||||||-|
T Consensus 385 ---v~igyf~Q~~~~l~~~~t~~d~l~~~~---------~~~~----e~~~r~~L~~f~F~~~~~~~~v~~-LSGGEk~R 447 (530)
T COG0488 385 ---VKIGYFDQHRDELDPDKTVLEELSEGF---------PDGD----EQEVRAYLGRFGFTGEDQEKPVGV-LSGGEKAR 447 (530)
T ss_pred ---eEEEEEEehhhhcCccCcHHHHHHhhC---------cccc----HHHHHHHHHHcCCChHHHhCchhh-cCHhHHHH
Confidence 23778788863 335556666543321 1100 245677899999987767777764 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE-cCc
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT-GDA 308 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~-g~~ 308 (325)
+.||+.++.+|.+|||||||++||.++.+.+.+.|.++. .|||+||||.+++..+ +++++.+++ ++... |+.
T Consensus 448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---Gtvl~VSHDr~Fl~~v-a~~i~~~~~-~~~~~~g~y 520 (530)
T COG0488 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE---GTVLLVSHDRYFLDRV-ATRIWLVED-KVEEFEGGY 520 (530)
T ss_pred HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhh-cceEEEEcC-ceeEcCCCH
Confidence 999999999999999999999999999999999999883 4999999999999998 599999987 55544 543
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.5e-35 Score=265.14 Aligned_cols=199 Identities=21% Similarity=0.269 Sum_probs=132.6
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCccHHHHH-HHHhCCCCCCCCccEEEECC-------EeCCCC-CHHH--HhhccEE
Q 020477 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLS-KVLVGHPDYEVTEGSVVFKG-------ENLLEM-EPEE--RSLAGLF 159 (325)
Q Consensus 91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl-~~l~Gl~~~~p~~G~I~~~g-------~~i~~~-~~~~--~~~~~i~ 159 (325)
+..+|+++||+|++||+++|+|+||||||||+ ..+.. .|++.+.. ..+... .+.. .+.....
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 46799999999999999999999999999996 33321 23322110 000000 0111 1111122
Q ss_pred EeccCCcc--CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 160 MSFQSPVE--IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 160 ~~~Q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+..|++.. .+..++.. +............ ......+ .+.++.+++.....++.+.+ |||||+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~-----~~~~~~~-~~~l~~~~l~~~~~~~~~~~-LSgG~~qrv~lara 151 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGT-VTEIYDYLRLLFA-----RVGIRER-LGFLVDVGLGYLTLSRSAPT-LSGGEAQRIRLATQ 151 (226)
T ss_pred EEecCCCCCCCCCccHHH-HHHHHHHHHHHhh-----hhhHHHH-HHHHHHCCCCcccccCccCc-CCHHHHHHHHHHHH
Confidence 33344321 22222221 1111111000000 0111122 45788999864346777764 99999999999999
Q ss_pred HHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE------eCCEEEEEc
Q 020477 238 AVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM------EDGRIIKTG 306 (325)
Q Consensus 238 L~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl------~~G~iv~~g 306 (325)
|+.+| ++|||||||+|||+.+++.+.+.|++++++|.|||+||||++++. + ||++++| ++|+|+++|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~-~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-A-ADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-h-CCEEEEeCCCccccCCEEEecC
Confidence 99998 599999999999999999999999998767899999999999874 5 7999999 999999876
No 365
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-36 Score=254.89 Aligned_cols=192 Identities=22% Similarity=0.335 Sum_probs=155.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+++.+||+...+ ...+|.++||++.+||++-|.||||||||||||+|+|+ ..|++|+|.|+|.++.........
T Consensus 2 ~L~a~~L~~~R~--e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL--l~p~~G~v~~~~~~i~~~~~~~~~-- 75 (209)
T COG4133 2 MLEAENLSCERG--ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL--LRPDAGEVYWQGEPIQNVRESYHQ-- 75 (209)
T ss_pred cchhhhhhhccC--cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc--cCCCCCeEEecCCCCccchhhHHH--
Confidence 578889987764 46899999999999999999999999999999999998 789999999999988765432211
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.+-|+-..+.+-+.+|+.||+.+..... +. .. ...+.++++.+|+. .+.+.++.. ||-|||+||+|||
T Consensus 76 ~l~yLGH~~giK~eLTa~ENL~F~~~~~----~~--~~----~~~i~~Al~~vgL~-g~~dlp~~~-LSAGQqRRvAlAr 143 (209)
T COG4133 76 ALLYLGHQPGIKTELTALENLHFWQRFH----GS--GN----AATIWEALAQVGLA-GLEDLPVGQ-LSAGQQRRVALAR 143 (209)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHh----CC--Cc----hhhHHHHHHHcCcc-cccccchhh-cchhHHHHHHHHH
Confidence 1223334455667789999987653321 11 00 13467789999996 677888875 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL 286 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~ 286 (325)
.++..++++||||||++||.+.+..+..++..-..+|.-||.+||+.--+
T Consensus 144 L~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 144 LWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 99999999999999999999999999999999888888899999976444
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-36 Score=249.81 Aligned_cols=211 Identities=26% Similarity=0.311 Sum_probs=169.7
Q ss_pred cEEEEEEEEEEC-----CCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE----eCCC
Q 020477 77 LLQVTGLTAVIA-----ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE----NLLE 147 (325)
Q Consensus 77 ~l~~~~ls~~y~-----~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~----~i~~ 147 (325)
.|.++|++|+|. +-.-++++++||+++.||++++-||||||||||+|+|-|- |.|++|+|.+.-. ++..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaN--Y~~d~G~I~v~H~g~~vdl~~ 81 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN--YLPDEGQILVRHEGEWVDLVT 81 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhc--cCCCCceEEEEeCcchhhhhc
Confidence 588999999983 1124689999999999999999999999999999999996 8999999998532 2222
Q ss_pred CCHH---HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020477 148 MEPE---ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF 224 (325)
Q Consensus 148 ~~~~---~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 224 (325)
..+. ..++.-++|+.|.....|.....+.+...... .+ ...+....++.+++.++++...++.-.+.. +
T Consensus 82 a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~----~g---v~~~~a~~~a~~Ll~rLnlperLW~LaPaT-F 153 (235)
T COG4778 82 AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA----RG---VPREVARAKAADLLTRLNLPERLWSLAPAT-F 153 (235)
T ss_pred cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHcCCCHHHhcCCCcc-c
Confidence 2222 22334588998987777777766665444322 12 234556677888999999987777777764 9
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
||||+|||-|||.++.+-+||+|||||++||..+++.+.++|.+-+..|.++|=|=||-+.-+.+ |||++-|.
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~v-adR~~~~~ 226 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAV-ADRLLDVS 226 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHH-hhheeecc
Confidence 99999999999999999999999999999999999999999999888899999999997766666 79987664
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.2e-35 Score=310.04 Aligned_cols=254 Identities=22% Similarity=0.290 Sum_probs=196.3
Q ss_pred eehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCC
Q 020477 27 VFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEG 105 (325)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~G 105 (325)
.+..|+.-++...+..-++..+.+|+.+.+..++.........+.......++++|.++++... ..+.|+||||+|++|
T Consensus 468 iLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G 547 (1381)
T KOG0054|consen 468 ILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKG 547 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCC
Confidence 4456666677777888888999999999887665544333222333456679999999998652 344899999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR 185 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~ 185 (325)
+.+||+|+-|||||+||.+|.|- .+..+|+|.++|. ++|++|.|.++.+ |+.+|+.++....
T Consensus 548 ~lvaVvG~vGsGKSSLL~AiLGE--m~~~sG~v~v~gs--------------iaYv~Q~pWI~ng-TvreNILFG~~~d- 609 (1381)
T KOG0054|consen 548 QLVAVVGPVGSGKSSLLSAILGE--MPKLSGSVAVNGS--------------VAYVPQQPWIQNG-TVRENILFGSPYD- 609 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--cccccceEEEcCe--------------EEEeccccHhhCC-cHHHhhhcCcccc-
Confidence 99999999999999999999996 5678999999984 7899999998765 8888887653211
Q ss_pred hhcCCCCCChHHHHHh------HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHH
Q 020477 186 RKLGQPEIGPIEFYAY------LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 259 (325)
Q Consensus 186 ~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~ 259 (325)
++.+++ +.+.++.+..++...-.+-|-+||||||||++||||+.++++|+|||.|+|++|....
T Consensus 610 ----------~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg 679 (1381)
T KOG0054|consen 610 ----------EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVG 679 (1381)
T ss_pred ----------HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhh
Confidence 111211 2223444443322222223336999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 260 RDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 260 ~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+.+.+..-.-.-+++|+|+|||.++++.. +|.|++|++|+|++.|+.++
T Consensus 680 ~~if~~ci~~~L~~KT~ILVTHql~~L~~--ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 680 KHIFEECIRGLLRGKTVILVTHQLQFLPH--ADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred HHHHHHHHHhhhcCCEEEEEeCchhhhhh--CCEEEEecCCeEecccCHHH
Confidence 99887665433457899999999998886 69999999999999998764
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.1e-32 Score=252.12 Aligned_cols=201 Identities=18% Similarity=0.237 Sum_probs=139.4
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHh--------CCCCCCCCcc-----------EEEECCEeCCCCCHHH
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV--------GHPDYEVTEG-----------SVVFKGENLLEMEPEE 152 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~--------Gl~~~~p~~G-----------~I~~~g~~i~~~~~~~ 152 (325)
...|+|+|++|+.|.+++|+|+||||||||++.+. +.....|..+ -|.++..++...+...
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34699999999999999999999999999998652 1000012111 3555555553321100
Q ss_pred Hhh-------------------------ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHH
Q 020477 153 RSL-------------------------AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE 207 (325)
Q Consensus 153 ~~~-------------------------~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (325)
... ..+.|..++...+..+++.+++.+.... ....+..+.++
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~-------------~~~~~~~~~L~ 154 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI-------------PKIARKLQTLC 154 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh-------------hhHHHHHHHHH
Confidence 000 0011111222222333444443322110 00134556788
Q ss_pred hcCCccccccccCCCCCChHHHHHHHHHHHHHhC---CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020477 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG---ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR 284 (325)
Q Consensus 208 ~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~---p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~ 284 (325)
.+++.+..+++.+. +|||||+||++|||+|+.+ |+++||||||+|||+..++.+.+.|+++.++|.|||+||||++
T Consensus 155 ~vgL~~l~l~~~~~-~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 155 DVGLGYIKLGQPAT-TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred HcCCchhhhcCccc-cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 99996424566665 4999999999999999996 7999999999999999999999999999877899999999999
Q ss_pred HHhhhCCcEEEEE------eCCEEEEEcCc
Q 020477 285 LLEFIKPTFIHIM------EDGRIIKTGDA 308 (325)
Q Consensus 285 ~~~~~~~d~i~vl------~~G~iv~~g~~ 308 (325)
++. . +|++++| ++|+|++.|++
T Consensus 234 ~i~-~-aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VIK-C-ADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHH-h-CCEEEEecCCcCCCCCEEEEeCCC
Confidence 886 4 7999999 89999999864
No 369
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-32 Score=266.09 Aligned_cols=222 Identities=23% Similarity=0.339 Sum_probs=186.1
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..+.++++|++.. ..++|+||++.+||++||.|-=|||+|-|+++|.|. .++.+|+|.++|+++...++.+.
T Consensus 260 ~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 260 GEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred CCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCCCHHHH
Confidence 4678999999842 258999999999999999999999999999999997 56789999999999988887776
Q ss_pred hhccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 154 SLAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 154 ~~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
-..+++|++.|. -++..+++.+|+............ -.......+.+.++.+++++...-.+..+.. ||||-+|
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~--~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~-LSGGNQQ 408 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRG--LIDRRKERALAERYIRRLRIKTPSPEQPIGT-LSGGNQQ 408 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcccc--ccChHHHHHHHHHHHHhcCcccCCccchhhc-CCchhhh
Confidence 667999999774 367788888888766211111111 2333444556777889999876656666664 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||.|||.|..+|++|||||||.|.|.-++.+|+++|++++++|++||+||-++.++..+ ||||+||++|+++.+-+
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~-~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGL-SDRILVMREGRIVGELD 484 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhh-CCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999887 69999999999997543
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=6.2e-33 Score=229.73 Aligned_cols=134 Identities=30% Similarity=0.445 Sum_probs=107.4
Q ss_pred eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchH
Q 020477 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNI 174 (325)
Q Consensus 95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~ 174 (325)
|+|+||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+....+ ..+++++|++.+++..++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~--~~~~~G~i~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL--LPPDSGSILINGKDISDIDIEELR-RRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTS--SHESEEEEEETTEEGTTSHHHHHH-HTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccc--cccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 7899999999999999999999999999999998 678999999999999874433333 4588999998888888877
Q ss_pred HHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020477 175 DFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID 251 (325)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt 251 (325)
++. ....+.++++.+++.. ...++... .|||||||||+|||||+.+|++|||||||
T Consensus 78 ~~~--------------------~~~~~~~~l~~l~~~~~~~~~~~~~~~-~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 78 ENE--------------------SDERIEEVLKKLGLEDLLDRKIGQRAS-SLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHH--------------------HHHHHHHHHHHTTHGGGTGSBGTSCGG-GSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred ccc--------------------ccccccccccccccccccccccccccc-hhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 661 0123445566666532 22233334 59999999999999999999999999999
Q ss_pred c
Q 020477 252 S 252 (325)
Q Consensus 252 s 252 (325)
|
T Consensus 137 ~ 137 (137)
T PF00005_consen 137 N 137 (137)
T ss_dssp T
T ss_pred C
Confidence 7
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.98 E-value=1.9e-32 Score=241.50 Aligned_cols=166 Identities=19% Similarity=0.266 Sum_probs=126.4
Q ss_pred ce-eeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC---------ccEEEECCEeCCCCCHHHHhhccEEEecc
Q 020477 94 IL-KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT---------EGSVVFKGENLLEMEPEERSLAGLFMSFQ 163 (325)
Q Consensus 94 iL-~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~---------~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q 163 (325)
-+ +++++++.+| +++|+||||||||||+++|+|+ ..+. .|++.+.|+++.... ....++++||
T Consensus 11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~vfq 83 (197)
T cd03278 11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWV--LGEQSAKSLRGEKMSDVIFAGSETRKPA----NFAEVTLTFD 83 (197)
T ss_pred CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHH--hccccchhhcccCHHHHhccCCCCCCCC----ceEEEEEEEE
Confidence 35 7789999999 9999999999999999999997 3232 356777777653311 1235889999
Q ss_pred CCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH----
Q 020477 164 SPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV---- 239 (325)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~---- 239 (325)
++..+... . . ..++.++++. .+..++.+. .||||||||++||++|+
T Consensus 84 ~~~~~~~~-----------------~-~-------~~~~~~~l~~----~~~~~~~~~-~LS~G~kqrl~la~~l~~~~~ 133 (197)
T cd03278 84 NSDGRYSI-----------------I-S-------QGDVSEIIEA----PGKKVQRLS-LLSGGEKALTALALLFAIFRV 133 (197)
T ss_pred cCCCceeE-----------------E-e-------hhhHHHHHhC----CCccccchh-hcCHHHHHHHHHHHHHHHhcc
Confidence 98654100 0 0 1133444555 134556665 49999999999999997
Q ss_pred hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
.+|+++||||||++||+..+..+.+.|+++.+ +.|||+||||++++. . +|+++.+..
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~-~-~d~v~~~~~ 190 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKGTME-A-ADRLYGVTM 190 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHh-h-cceEEEEEe
Confidence 46699999999999999999999999999865 589999999999875 4 689987753
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.97 E-value=1.4e-31 Score=238.71 Aligned_cols=195 Identities=22% Similarity=0.205 Sum_probs=131.6
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEe-CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVN-EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~-~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.|+++|+. +|.+ . ++++|+.. +|++++|+||||||||||+++|++.+ +.+..+....+ .....+... ...
T Consensus 5 ~i~l~nf~-~y~~--~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l-~g~~~~~~~~~-~~~~~~~~~-~~~ 75 (213)
T cd03279 5 KLELKNFG-PFRE--E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL-YGKTPRYGRQE-NLRSVFAPG-EDT 75 (213)
T ss_pred EEEEECCc-CcCC--c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeE-ecCccccccch-hHHHHhcCC-Ccc
Confidence 47888888 6643 2 56677654 58999999999999999999999642 33444444332 000001001 112
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..+.++||++.... .+.... ..+..+....+ .+...++. ++.++.+. .|||||+||++||
T Consensus 76 ~~v~~~f~~~~~~~--~~~r~~--------------gl~~~~~~~~~--~l~~g~l~-~~l~~~~~-~lS~G~~~r~~la 135 (213)
T cd03279 76 AEVSFTFQLGGKKY--RVERSR--------------GLDYDQFTRIV--LLPQGEFD-RFLARPVS-TLSGGETFLASLS 135 (213)
T ss_pred EEEEEEEEECCeEE--EEEEec--------------CCCHHHHHHhh--hhhhcchH-HHhcCCcc-ccCHHHHHHHHHH
Confidence 34777788763211 111100 11111111111 12222232 34566665 4999999999999
Q ss_pred HHHHh----------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 236 QLAVL----------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 236 raL~~----------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
|||+. +|+++||||||++||+.+++.+.+.|+++++++.|||+||||++++..+ +|+++++++|.
T Consensus 136 ~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~-~~~i~~~~~~~ 210 (213)
T cd03279 136 LALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERI-PQRLEVIKTPG 210 (213)
T ss_pred HHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhh-CcEEEEEecCC
Confidence 99985 5789999999999999999999999999976688999999999999887 79999999885
No 373
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.2e-31 Score=245.56 Aligned_cols=242 Identities=18% Similarity=0.248 Sum_probs=171.3
Q ss_pred hhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHH
Q 020477 40 SNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKS 119 (325)
Q Consensus 40 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKS 119 (325)
-.+..+..+.++++..-. .+.+... .+.+..+.-..|+++|+.|.|... ..=+..||++|++||++-|+|.||||||
T Consensus 287 P~l~~AqvA~~kiakle~-~~~~a~~-~~~q~~p~~~~lelrnvrfay~~~-~FhvgPiNl~ikrGelvFliG~NGsGKS 363 (546)
T COG4615 287 PTLLTAQVAFNKIAKLEL-APYKADF-PRPQAFPDWKTLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKS 363 (546)
T ss_pred hHHHHHHHHHHHHHHhhc-CCccccC-CCCCcCCcccceeeeeeeeccCcc-cceecceeeEEecCcEEEEECCCCCcHH
Confidence 445566666777665433 2222111 122222224469999999999753 2458899999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH
Q 020477 120 TLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY 199 (325)
Q Consensus 120 TLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (325)
||+++|.|+ ++|++|+|++||++++.-+.++.+.. +.-+|-|..+|+.+-.. ......
T Consensus 364 T~~~LLtGL--~~PqsG~I~ldg~pV~~e~ledYR~L-fSavFsDyhLF~~ll~~---------------e~~as~---- 421 (546)
T COG4615 364 TLAMLLTGL--YQPQSGEILLDGKPVSAEQLEDYRKL-FSAVFSDYHLFDQLLGP---------------EGKASP---- 421 (546)
T ss_pred HHHHHHhcc--cCCCCCceeECCccCCCCCHHHHHHH-HHHHhhhHhhhHhhhCC---------------ccCCCh----
Confidence 999999998 89999999999999988776654332 23345555554421110 000111
Q ss_pred HhHHHHHHhcCCcc--ccccccC-CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhc-cCCCcE
Q 020477 200 AYLYPKLERLSMKT--DFLNRNV-NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL-LTPKNS 275 (325)
Q Consensus 200 ~~~~~~l~~~~l~~--~~~~~~~-~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l-~~~g~t 275 (325)
..+...++++.+.. ...++.. ...||.|||+|+++--|++-+.+|++|||=-+--||.-++++++.+--+ +++|+|
T Consensus 422 q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT 501 (546)
T COG4615 422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501 (546)
T ss_pred HHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence 12333444444421 2233332 2249999999999999999999999999999999999999999877654 566999
Q ss_pred EEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 276 LLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 276 vIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|+.||||-.... ++||++.|++|++++.-..
T Consensus 502 I~aIsHDd~YF~--~ADrll~~~~G~~~e~tge 532 (546)
T COG4615 502 IFAISHDDHYFI--HADRLLEMRNGQLSELTGE 532 (546)
T ss_pred EEEEecCchhhh--hHHHHHHHhcCceeecccc
Confidence 999999865443 4799999999999976543
No 374
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=2.8e-31 Score=255.53 Aligned_cols=203 Identities=25% Similarity=0.343 Sum_probs=157.6
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
+.|.+.+.|++|.|.++ ..++++++|-|..++.+++|||||+|||||||+++|. ..|+.|.|.-.-...
T Consensus 386 p~pvi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd--l~p~~G~vs~~~H~~-------- 454 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD--LQPTIGMVSRHSHNK-------- 454 (614)
T ss_pred CCCeEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhc--ccccccccccccccc--------
Confidence 56899999999999753 3799999999999999999999999999999999997 679999886543221
Q ss_pred hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 154 ~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
+.+.-|+.. +--..+..+++...+ .. ....+.+..++.++|+..+..+.++. +||+|||.|
T Consensus 455 ----~~~y~Qh~~e~ldl~~s~le~~~~~~-------~~-----~~~~e~~r~ilgrfgLtgd~q~~p~~-~LS~Gqr~r 517 (614)
T KOG0927|consen 455 ----LPRYNQHLAEQLDLDKSSLEFMMPKF-------PD-----EKELEEMRSILGRFGLTGDAQVVPMS-QLSDGQRRR 517 (614)
T ss_pred ----chhhhhhhHhhcCcchhHHHHHHHhc-------cc-----cchHHHHHHHHHHhCCCccccccchh-hcccccchh
Confidence 111123221 112234444433222 11 11234567789999997565666665 599999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCc
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDA 308 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~ 308 (325)
|++|+.++.+|.+|||||||+|||.++...+.+.|.++. .+||+||||..++..+ +++|++..+|.+. ..|+.
T Consensus 518 VlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---Ggvv~vSHDfrlI~qV-aeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 518 VLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---GGVVLVSHDFRLISQV-AEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---CceeeeechhhHHHHH-HHHhHhhccCceeecCccH
Confidence 999999999999999999999999999999999999873 3799999999999998 6889988888765 45654
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=1.1e-31 Score=225.80 Aligned_cols=208 Identities=24% Similarity=0.338 Sum_probs=161.2
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
++.++||+.. +-|-.+|.++..||++-+|||||||||||+-.++|+ .|.+|+|.++|.++..+...+..+.
T Consensus 3 l~qln~v~~~------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm---~~~sGsi~~~G~~l~~~~~~eLArh 73 (248)
T COG4138 3 LMQLNDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGSGSIQFAGQPLEAWSATELARH 73 (248)
T ss_pred eeeecccccc------ccccccccccccceEEEEECCCCccHHHHHHHHhCC---CCCCceEEECCcchhHHhHhHHHHH
Confidence 5778888753 247789999999999999999999999999999996 4789999999999988776554433
Q ss_pred cEEEec-cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 157 GLFMSF-QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 157 ~i~~~~-Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..+... |.|. ..+.++.++.. ..+ ..+....+.++...++++ +.+.|.+.+ |||||-|||-+|
T Consensus 74 RAYLsQqq~p~--f~mpV~~YL~L---------~qP---~~~~a~~i~~i~~~L~l~-DKL~Rs~~q-LSGGEWQRVRLA 137 (248)
T COG4138 74 RAYLSQQQTPP--FAMPVWHYLTL---------HQP---DKTRTELLNDVAGALALD-DKLGRSTNQ-LSGGEWQRVRLA 137 (248)
T ss_pred HHHHhhccCCc--chhhhhhhhhh---------cCc---hHHHHHHHHHHHhhhccc-chhhhhhhh-cCcccceeeEEe
Confidence 222222 2332 12334333322 112 123334566677788886 567787765 999999999999
Q ss_pred HHHHh-------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 236 QLAVL-------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 236 raL~~-------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
...++ ..++||+|||.++||...+..+..+|.+++..|.+|||++||++--..- +|++++++.|++...|..
T Consensus 138 av~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrh-A~~~wLL~rG~l~~~G~~ 216 (248)
T COG4138 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRH-AHRAWLLKRGKLLASGRR 216 (248)
T ss_pred EEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHH-HHHHHHHhcCeEEeecch
Confidence 87764 3469999999999999999999999999999999999999999876654 799999999999999987
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 217 ~e 218 (248)
T COG4138 217 EE 218 (248)
T ss_pred hh
Confidence 54
No 376
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=4.7e-29 Score=238.87 Aligned_cols=234 Identities=18% Similarity=0.252 Sum_probs=193.3
Q ss_pred CCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC-CCCCH
Q 020477 72 EKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL-LEMEP 150 (325)
Q Consensus 72 ~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i-~~~~~ 150 (325)
.+..+.|+++||++.-.. +...+++|||+|.+||++||.|-.|-|-+.|+.+|+|+ .++.+|+|.++|+++ ..+++
T Consensus 252 ~pg~~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGl--r~~~~G~I~l~G~~v~~~~~~ 328 (501)
T COG3845 252 TPGEVVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGL--RKPASGRILLNGKDVLGRLSP 328 (501)
T ss_pred CCCCeEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCC--CccCCceEEECCEeccccCCH
Confidence 345789999999987543 35789999999999999999999999999999999998 567789999999997 67788
Q ss_pred HHHhhccEEEeccCCc---cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChH
Q 020477 151 EERSLAGLFMSFQSPV---EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGG 227 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG 227 (325)
..++..+++++|.+.. +.+.++..+|+..............-....+..+...+.++++.....-...+.. +||||
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~-~LSGG 407 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR-SLSGG 407 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchh-hcCCc
Confidence 8888889999998863 5677888888765432110001111234455666777888999886433334444 59999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
.+||+-+||-|..+|++||+.+||-|||..+.+.|.+.|.+.++.|++|++||-|++++..+ ||||.||.+|+|+...+
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~l-sDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILEL-SDRIAVIYEGRIVGIVP 486 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHh-hheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999988 69999999999998777
Q ss_pred ccH
Q 020477 308 ASI 310 (325)
Q Consensus 308 ~~~ 310 (325)
++.
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 653
No 377
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.8e-30 Score=224.44 Aligned_cols=228 Identities=22% Similarity=0.344 Sum_probs=174.5
Q ss_pred CcEEEEEEEEEEC--CCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC--CCCCCccEEEECCEeCCCCCHH
Q 020477 76 PLLQVTGLTAVIA--ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP--DYEVTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 76 ~~l~~~~ls~~y~--~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~--~~~p~~G~I~~~g~~i~~~~~~ 151 (325)
+.+.++|++..+. .+...+++++|+++++||+-|+||+||||||-..|+|+|.. .+..+..+.++++.++..+++.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 5678899998874 23356899999999999999999999999999999999962 1234667888999999999988
Q ss_pred HHhhc---cEEEeccCCccC--CCcchH-HHHHHHH--HHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCC
Q 020477 152 ERSLA---GLFMSFQSPVEI--PGVNNI-DFLHMAY--NARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVN 221 (325)
Q Consensus 152 ~~~~~---~i~~~~Q~~~~~--~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~ 221 (325)
+|++. .+.++||+|... |..++- +.+...- .....++.. ... .+.++-++|.++|+.. +.+..++.
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~--F~W--rKrrAIeLLHrVGIKdHkDIM~SYP~ 157 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQR--FGW--RKRRAIELLHRVGIKDHKDIMRSYPY 157 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhh--hch--hHHHHHHHHHHhccccHHHHHHhCcc
Confidence 76652 478999998632 222211 1111100 000011100 001 1245667899999963 23444554
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
+|--||-|+|+||.|++.+|++||.||||+++|+.++.++..+|..+.+. |+||++++||+..+... ||+|-||.-|
T Consensus 158 -ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W-~d~i~VlYCG 235 (330)
T COG4170 158 -ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQW-ADKINVLYCG 235 (330)
T ss_pred -hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHH-hhheEEEEec
Confidence 49999999999999999999999999999999999999999999999754 88999999999999987 7999999999
Q ss_pred EEEEEcCcc
Q 020477 301 RIIKTGDAS 309 (325)
Q Consensus 301 ~iv~~g~~~ 309 (325)
+-++.++.+
T Consensus 236 Q~~ESa~~e 244 (330)
T COG4170 236 QTVESAPSE 244 (330)
T ss_pred ccccccchh
Confidence 999888654
No 378
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=3.1e-30 Score=269.27 Aligned_cols=234 Identities=24% Similarity=0.255 Sum_probs=181.9
Q ss_pred cEEEEEEEEEE--CCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 77 LLQVTGLTAVI--AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 77 ~l~~~~ls~~y--~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
+...+|+.+.- .++.+++|+||+=-+++|-.+||+|+|||||||||++|+|-..-...+|+|+++|.+..+. .-.
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~--tF~- 863 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQE--TFA- 863 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchh--hhc-
Confidence 44455555443 2345789999999999999999999999999999999999522335689999999986531 112
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc--cccccccCCCCCChHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK--TDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~LSgGqrQRv 232 (325)
+.+||+.|++...+.+||.|-+.+....+. ..+++.++..+.++++++.++++ .+.+-..++.+||..||+|+
T Consensus 864 -R~~GYvqQ~DiH~~~~TVrESL~fSA~LRl----p~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 864 -RVSGYVEQQDIHSPELTVRESLRFSAALRL----PKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred -cccceeecccccCcccchHHHHHHHHHHcC----CCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhcee
Confidence 237888899888899999998877654432 12344556667889999999996 23333455567999999999
Q ss_pred HHHHHHHhCC-CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe-CCEEEEEcCccH
Q 020477 233 EILQLAVLGA-DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME-DGRIIKTGDASI 310 (325)
Q Consensus 233 ~iAraL~~~p-~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~-~G~iv~~g~~~~ 310 (325)
.||--|+.+| .||+|||||||||..+...|++.+++++..|.|||.+-|.+...-.-..|++++|+ .|+.|+.|+...
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999 99999999999999999999999999999999999999997643222248898885 578999998642
Q ss_pred -----HHHHHhCC
Q 020477 311 -----ATVLEEGG 318 (325)
Q Consensus 311 -----~~~~~~~~ 318 (325)
.+..+..+
T Consensus 1019 ~s~~li~YFes~~ 1031 (1391)
T KOG0065|consen 1019 NSSKLIEYFESIG 1031 (1391)
T ss_pred ccHHHHHHHHhcC
Confidence 34555555
No 379
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=3.5e-29 Score=227.13 Aligned_cols=200 Identities=18% Similarity=0.216 Sum_probs=123.7
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC--------------CCCCCcc-------
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP--------------DYEVTEG------- 136 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~--------------~~~p~~G------- 136 (325)
|+++|.. +|++ +.++++++ |++++|+||||||||||+++|+++. ...+.+|
T Consensus 4 i~~~nfk-sy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 4 VIIQGFK-SYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEeCcc-Cccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 4556553 4643 56788876 8899999999999999999998431 0233445
Q ss_pred -EEEECCEeCC-CCCHHH-HhhccEEEeccCCccCCC-cchHHHHHHHHHHHhhhcCCCCCChH--HHHHhHHHHHHhcC
Q 020477 137 -SVVFKGENLL-EMEPEE-RSLAGLFMSFQSPVEIPG-VNNIDFLHMAYNARRRKLGQPEIGPI--EFYAYLYPKLERLS 210 (325)
Q Consensus 137 -~I~~~g~~i~-~~~~~~-~~~~~i~~~~Q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 210 (325)
+|.+++.+-. ...... .-+..+++++|+..++.. .+..+....... .+....... ....++ .+.++
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~-----~gl~~~~~~~~~~qg~i---~~l~~ 147 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLES-----AGFSRSNPYYIVPQGKI---NSLTN 147 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHH-----cCCCCCCCcEEEEcCch---HHhhh
Confidence 5555543211 000011 111235666776655542 343333222211 111100000 000111 12223
Q ss_pred CccccccccCCCCCChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020477 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL 286 (325)
Q Consensus 211 l~~~~~~~~~~~~LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~ 286 (325)
+. ...+..+. .||||||||++|||||+. +|+++||||||++||+.+++.+++.|+++.+ +.+||++||+.+.
T Consensus 148 l~-~~~~~~~~-~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~- 223 (243)
T cd03272 148 MK-QDEQQEMQ-QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPEL- 223 (243)
T ss_pred cc-cccccccc-ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH-
Confidence 32 22344554 599999999999999974 5899999999999999999999999999865 6789999998664
Q ss_pred hhhCCcEEEEEe
Q 020477 287 EFIKPTFIHIME 298 (325)
Q Consensus 287 ~~~~~d~i~vl~ 298 (325)
..+ ||++++|.
T Consensus 224 ~~~-~d~i~~l~ 234 (243)
T cd03272 224 LEV-ADKFYGVK 234 (243)
T ss_pred Hhh-CCEEEEEE
Confidence 455 69998874
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=243.75 Aligned_cols=220 Identities=21% Similarity=0.275 Sum_probs=150.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC-CCCCCccEEEECCEeCCCCCHHHH
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP-DYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~-~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..-+.++|+++.|.+ ..+++|++|++.+|+.+||+|+|||||||+|++|.|-. +.++.-+ ++...+.+..-.....
T Consensus 73 s~dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~~av 149 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEKQAV 149 (614)
T ss_pred cccceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchHHHH
Confidence 346899999999964 78999999999999999999999999999999999952 2222222 2222222211110000
Q ss_pred hhccEEEeccCCccC-----------CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC
Q 020477 154 SLAGLFMSFQSPVEI-----------PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE 222 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 222 (325)
...+-..++...-+ ... ..+-+...+.. ..+...+.+..++..++..+|...+..++....
T Consensus 150 -~~v~~~~~~e~~rle~~~E~l~~~~d~~-~~~~l~~~~~r------~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~ 221 (614)
T KOG0927|consen 150 -QAVVMETDHERKRLEYLAEDLAQACDDK-EKDELDELYER------LDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKD 221 (614)
T ss_pred -HHHhhhhHHHHHHHHHHHHHHHhhccch-hhhHHHHHHHH------HHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhc
Confidence 00000000100000 000 00000000100 011122334456667788888877777888765
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE-
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR- 301 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~- 301 (325)
||||+|.|++|||+|..+|++|||||||+|||+++..++-+.|.++.. .++|+++|+.+++..+ |..|+-|++++
T Consensus 222 -~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QDfln~v-CT~Ii~l~~kkl 297 (614)
T KOG0927|consen 222 -LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQDFLNGV-CTNIIHLDNKKL 297 (614)
T ss_pred -cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchhhhhhH-hhhhheecccce
Confidence 999999999999999999999999999999999999999999988742 2899999999999998 58899999999
Q ss_pred EEEEcCcc
Q 020477 302 IIKTGDAS 309 (325)
Q Consensus 302 iv~~g~~~ 309 (325)
+.+.|+.+
T Consensus 298 ~~y~Gnyd 305 (614)
T KOG0927|consen 298 IYYEGNYD 305 (614)
T ss_pred eeecCCHH
Confidence 55667654
No 381
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=8.9e-30 Score=232.51 Aligned_cols=183 Identities=16% Similarity=0.237 Sum_probs=125.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCCCCCCCC-ccEEEECCE-eCCCCCHH-HHhhccEEEeccCCc---------cCCCcc
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-EGSVVFKGE-NLLEMEPE-ERSLAGLFMSFQSPV---------EIPGVN 172 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-~G~I~~~g~-~i~~~~~~-~~~~~~i~~~~Q~~~---------~~~~~~ 172 (325)
..+++|+||||||||||+++|+++ +.+. .|++++.|. ++...... ......+.++||++. +.+.++
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~l--l~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFV--LGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--hcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 459999999999999999999997 4444 468888776 33211100 111235778889852 223444
Q ss_pred hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-------------------ccccccCCCCCChHHHHHHH
Q 020477 173 NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-------------------DFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~~~~~~~~~LSgGqrQRv~ 233 (325)
+.+++...... .+... ........+.+.++.+++.. +..++.+. .||||||||++
T Consensus 103 V~r~I~~~~~~---~~~in--~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~-~lS~G~~qr~~ 176 (251)
T cd03273 103 VTRQIVLGGTN---KYLIN--GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLT-ELSGGQRSLVA 176 (251)
T ss_pred EEEEEEcCCce---EEEEC--CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccccc-ccCHHHHHHHH
Confidence 44332211100 00000 01122356777888888852 22345555 59999999999
Q ss_pred HHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 234 ILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 234 iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
|||||+ .+|+++||||||++||+..++.+.+.|+++. +|.|||+|||+.+... . ||+++-+.
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~-~-~d~v~~~~ 242 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFN-N-ANVLFRTR 242 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHH-h-CCEEEEEE
Confidence 999998 5789999999999999999999999999985 4789999999976665 4 68887553
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.96 E-value=4e-28 Score=240.50 Aligned_cols=193 Identities=23% Similarity=0.355 Sum_probs=145.4
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
...++++||+..-+. ++..+++.+|+|++||.+.|.||||||||||+|+|+|+ ++-.+|+|.+-.
T Consensus 390 ~~~i~~~nl~l~~p~-~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL--WP~g~G~I~~P~------------ 454 (604)
T COG4178 390 DHGITLENLSLRTPD-GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL--WPWGSGRISMPA------------ 454 (604)
T ss_pred cceeEEeeeeEECCC-CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc--CccCCCceecCC------------
Confidence 578999999999875 46899999999999999999999999999999999998 555678776531
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccc------cCCCCCChHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR------NVNEGFSGGE 228 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~LSgGq 228 (325)
...+.|+||.|++-.+ +-.+.+..+-. .....+ +.+.++|.+++++ ++.++ .- ..||+||
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~-------~~~~~d----~~l~~vL~~vgL~-~L~~rl~~~~~W~-~vLS~GE 520 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNA-------APDFSD----AELVAVLHKVGLG-DLAERLDEEDRWD-RVLSGGE 520 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCC-------CCCCCh----HHHHHHHHHcCcH-HHHHHHhccCcHh-hhcChhH
Confidence 1236789999987555 55554432211 111222 2355667777775 22221 11 2499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
||||++||.|+++|++++|||.|++||++++..+++++++-. .+.|||-|+|...+... ....+-+.+
T Consensus 521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~-h~~~l~l~~ 588 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNF-HSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHH-Hhhheeecc
Confidence 999999999999999999999999999999999999998743 36899999998765543 334343333
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=4.6e-28 Score=263.71 Aligned_cols=217 Identities=19% Similarity=0.284 Sum_probs=149.8
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHH---------HHhCCCCCCCCc----cE----E
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSK---------VLVGHPDYEVTE----GS----V 138 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~---------~l~Gl~~~~p~~----G~----I 138 (325)
+.++++|++. ..|+++||+|+.||+++|+|+||||||||++ .|.|. ..+.. +. |
T Consensus 599 ~~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~--~~~~~~i~g~~i~~vi 669 (1809)
T PRK00635 599 GTLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQG--FCSNLSIQWGAISRLV 669 (1809)
T ss_pred CeEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCC--CcccccccccccceeE
Confidence 4688888862 3699999999999999999999999999999 55563 11111 11 2
Q ss_pred EECCEeCCCCCH-----------HHH---------hhc---cEEEeccC------------------C------------
Q 020477 139 VFKGENLLEMEP-----------EER---------SLA---GLFMSFQS------------------P------------ 165 (325)
Q Consensus 139 ~~~g~~i~~~~~-----------~~~---------~~~---~i~~~~Q~------------------~------------ 165 (325)
.++..++...+. ..+ +.. ...+.|+. +
T Consensus 670 ~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~Gk 749 (1809)
T PRK00635 670 HITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGK 749 (1809)
T ss_pred EecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCc
Confidence 344333321100 001 011 11223332 0
Q ss_pred --------ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcccc-ccccCCCCCChHHHHHHHHHH
Q 020477 166 --------VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDF-LNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 166 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~LSgGqrQRv~iAr 236 (325)
..+...++.+++.+....... +. ....+...++ +.++.+++. +. +++.+.. |||||+||++|||
T Consensus 750 Ry~~e~L~~~~~~~tI~evL~mtv~ea~~-~f---~~~~~i~~~l-~~L~~vGL~-~l~l~q~~~t-LSGGE~QRV~LAr 822 (1809)
T PRK00635 750 RFLPQVLEVRYKGKNIADILEMTAYEAEK-FF---LDEPSIHEKI-HALCSLGLD-YLPLGRPLSS-LSGGEIQRLKLAY 822 (1809)
T ss_pred ccCHHHHhhccCCCCHHHHHHcCHHHHHH-cc---cChHHHHHHH-HHHHHcCCc-chhhcCcccc-CCHHHHHHHHHHH
Confidence 022334555555443321111 11 1122333445 478889996 33 5677764 9999999999999
Q ss_pred HHH---hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe------CCEEEEEcC
Q 020477 237 LAV---LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME------DGRIIKTGD 307 (325)
Q Consensus 237 aL~---~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~------~G~iv~~g~ 307 (325)
||+ .+|++|||||||+|||+.+++.++++|++++++|.|||+||||++++ .. +|++++|. +|++++.|+
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~-aDrVi~L~p~gg~~~G~iv~~Gt 900 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KV-ADYVLELGPEGGNLGGYLLASCS 900 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-Hh-CCEEEEEccCCCCCCCEEEEeCC
Confidence 998 69999999999999999999999999999987789999999999988 55 79999996 799999998
Q ss_pred ccH
Q 020477 308 ASI 310 (325)
Q Consensus 308 ~~~ 310 (325)
++.
T Consensus 901 pee 903 (1809)
T PRK00635 901 PEE 903 (1809)
T ss_pred HHH
Confidence 864
No 384
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=1.3e-28 Score=218.30 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=114.8
Q ss_pred eEEEEeCCCEEEEEcCCCccHHHHHHHHh----CCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCc-----cC
Q 020477 98 VNLLVNEGEVHAIMGKNGSGKSTLSKVLV----GHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPV-----EI 168 (325)
Q Consensus 98 vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~----Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~-----~~ 168 (325)
.++++.+| +++|+||||||||||+++|. |. ..|..|.+..+...+.. . .....+.++||++. ..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~--~~~~~~~~~~~~~~i~~-~---~~~~~v~~~f~~~~~~~~~v~ 88 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGE--LPPNSKGGAHDPKLIRE-G---EVRAQVKLAFENANGKKYTIT 88 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCC--CCcccccccchHHHHhC-C---CCcEEEEEEEEeCCCCEEEEE
Confidence 45667777 99999999999999999995 75 44666666522211111 1 11234777888872 11
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH------HHHHHHHHhCC
Q 020477 169 PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR------NEILQLAVLGA 242 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR------v~iAraL~~~p 242 (325)
..+++.+++... ... .+.+.+ ++.+. .||+||+|| ++||||++.+|
T Consensus 89 r~~~~~~~~~~~-------------~~~----~~~~~~----------~~~~~-~LS~G~~~~~~la~rlala~al~~~p 140 (204)
T cd03240 89 RSLAILENVIFC-------------HQG----ESNWPL----------LDMRG-RCSGGEKVLASLIIRLALAETFGSNC 140 (204)
T ss_pred EEhhHhhceeee-------------chH----HHHHHH----------hcCcc-ccCccHHHHHHHHHHHHHHHHhccCC
Confidence 112333222110 001 111111 34444 499999996 78999999999
Q ss_pred CEEEEeCcCcCCCHHHHH-HHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 243 DLAILDEIDSGLDVDALR-DVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 243 ~lLlLDEPtsgLD~~~~~-~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
+++||||||++||+..++ .+.++|+++.++ +.|||++||+++++. . +|++++|++
T Consensus 141 ~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~-~d~i~~l~~ 197 (204)
T cd03240 141 GILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-A-ADHIYRVEK 197 (204)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-h-CCEEEEEee
Confidence 999999999999999999 999999998765 789999999998775 4 688888854
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.95 E-value=3.2e-27 Score=247.51 Aligned_cols=105 Identities=23% Similarity=0.371 Sum_probs=92.9
Q ss_pred HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 020477 203 YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI 279 (325)
Q Consensus 203 ~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIiv 279 (325)
.+.++.+++....+++.+.. |||||+||+.||++|+.+| +++||||||+|||+..++.+++.|+++.++|.|||+|
T Consensus 811 l~~L~~vgL~~l~l~~~~~t-LSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATT-LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHCCCCcccccCCccc-CCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45688889864345677664 9999999999999999999 9999999999999999999999999998778999999
Q ss_pred eCChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 280 THYRRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 280 tHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
|||++++. . +|+|++| ++|+|++.|+++.
T Consensus 890 tH~~~~i~-~-aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 890 EHNLDVIK-T-ADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred ecCHHHHH-h-CCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 99999885 4 7999999 7999999998753
No 386
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.8e-29 Score=224.95 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=120.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
.|+++|.. .|++ +.+++++++ ++++|+||||||||||+++|.-. +|.+.... + ..
T Consensus 5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~------------~G~~~~~~----~-~~ 59 (212)
T cd03274 5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV------------FGFRASKM----R-QK 59 (212)
T ss_pred EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH------------hccCHHHh----h-hh
Confidence 36788876 6753 678999987 89999999999999999999732 12111110 0 01
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHH----HhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNA----RRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
.+++++|+...++.+++.+........ .....+...... .......++++.+++. +..++.+. .||+|||||+
T Consensus 60 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~v~~~~~~~~~~L~-~~~~~~~~-~lS~G~~~r~ 136 (212)
T cd03274 60 KLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHN-RFLILQGEVEQIAQMP-KKSWKNIS-NLSGGEKTLS 136 (212)
T ss_pred hHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCC-ceEEcCCcEEEeeccc-cccccchh-hcCHHHHHHH
Confidence 123334544444433322211110000 000001100000 0000012234455553 44555555 4999999999
Q ss_pred HHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 233 EILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 233 ~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
+||||++. +|+++||||||+|||+.++..+.+.|+++.+ +.|+|++||+.+. ..+ ||++++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~~~-~~~-~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRNNM-FEL-ADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcHHH-HHh-CCEEEEEEe
Confidence 99999974 4799999999999999999999999999864 5689999999654 455 799998864
No 387
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.8e-28 Score=235.02 Aligned_cols=200 Identities=24% Similarity=0.266 Sum_probs=139.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
..-|.+++++..|+ ++.+|.+-++++..|..|||+|+||+|||||||+|+. |.|.....+ .+.+
T Consensus 78 ~~Di~~~~fdLa~G--~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v~~f~ve------qE~~ 141 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG--GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQVSGFHVE------QEVR 141 (582)
T ss_pred ccceeeeeeeeeec--chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCcCccCch------hhee
Confidence 34688999999997 4789999999999999999999999999999999986 333222211 0000
Q ss_pred hccEEEec--cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 155 LAGLFMSF--QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 155 ~~~i~~~~--Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
+. +++ |+ .+-.++...+++..... ... .....+ ....+|..+|+.++...++.. +||||=|-|+
T Consensus 142 --g~-~t~~~~~-~l~~D~~~~dfl~~e~~-----l~~-~~~l~e---i~~~~L~glGFt~emq~~pt~-slSGGWrMrl 207 (582)
T KOG0062|consen 142 --GD-DTEALQS-VLESDTERLDFLAEEKE-----LLA-GLTLEE---IYDKILAGLGFTPEMQLQPTK-SLSGGWRMRL 207 (582)
T ss_pred --cc-chHHHhh-hhhccHHHHHHHHhhhh-----hhc-cchHHH---HHHHHHHhCCCCHHHHhcccc-ccCcchhhHH
Confidence 00 000 11 01112223333221100 000 001111 122278899998776667766 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDA 308 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~ 308 (325)
+|||||..+||||||||||++||..+..++.+.|..+. .|+|+||||..++..+| ..|+-+++-++- +.|+.
T Consensus 208 aLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHDr~FLn~V~-tdIIH~~~~kL~~YkGN~ 280 (582)
T KOG0062|consen 208 ALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHDRNFLNTVC-TDIIHLENLKLDYYKGNY 280 (582)
T ss_pred HHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEeccHHHHHHHH-HHHHHHhhhhhhhhcCcH
Confidence 99999999999999999999999999999999999874 69999999999999985 556666655552 33543
No 388
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.2e-28 Score=227.34 Aligned_cols=201 Identities=24% Similarity=0.379 Sum_probs=151.6
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..|+|-+.||+|.|++ .++++++++|-|.--..+|||||||.||||||++|.|- +.|+.|+.+-+-
T Consensus 583 ~PPvLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk--l~P~~GE~RKnh----------- 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK--LDPNDGELRKNH----------- 648 (807)
T ss_pred CCCeeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcC--CCCCcchhhccc-----------
Confidence 5679999999999975 57899999999999999999999999999999999995 789999775432
Q ss_pred hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 154 ~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
+..|++-.|+.. +-...|..+++...++. + +..++..|-.+|+..+ .+.--...|||||+-|
T Consensus 649 -rL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl-------p-------yq~ARK~LG~fGL~sH-AHTikikdLSGGQKaR 712 (807)
T KOG0066|consen 649 -RLRIGWFDQHANEALNGEETPVEYLQRKFNL-------P-------YQEARKQLGTFGLASH-AHTIKIKDLSGGQKAR 712 (807)
T ss_pred -eeeeechhhhhHHhhccccCHHHHHHHhcCC-------C-------hHHHHHHhhhhhhhhc-cceEeeeecCCcchHH
Confidence 123666555543 22223455555443321 1 1234556778888643 2222223599999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE-EcCc
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK-TGDA 308 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~-~g~~ 308 (325)
|++|-.-+..|+||||||||++||.++...+.+.|+++. ..|||||||-+++....|. ++|+++-.|-+ +|+.
T Consensus 713 ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---GgVi~VsHDeRLi~eT~C~-LwVvE~Q~i~eIdGdF 786 (807)
T KOG0066|consen 713 VALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---GGVIMVSHDERLIVETDCN-LWVVENQGIDEIDGDF 786 (807)
T ss_pred HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---CcEEEEecccceeeecCce-EEEEccCChhhccccH
Confidence 999999999999999999999999999999999999984 3799999999998877664 56666654432 3443
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.3e-27 Score=225.61 Aligned_cols=202 Identities=22% Similarity=0.280 Sum_probs=158.7
Q ss_pred CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
...|.+++.+|+|.|..+.-+++.+++++++.-+.++++|+||+||||++|++.|- ..|..|.+.+.+.
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~--l~~~rgi~~~~~r--------- 426 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGD--LTPTRGIVGRHPR--------- 426 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhcc--CCcccceeeeccc---------
Confidence 35679999999999976433789999999999999999999999999999999995 6788998776542
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
..+++-+|...-+..+.+..+-.+. . ..+...++ .++..+..+|++.++....+. +||||||-||
T Consensus 427 ---~ri~~f~Qhhvd~l~~~v~~vd~~~-----~--~~pG~~~e----e~r~hl~~~Gl~g~la~~si~-~LSGGQKsrv 491 (582)
T KOG0062|consen 427 ---LRIKYFAQHHVDFLDKNVNAVDFME-----K--SFPGKTEE----EIRRHLGSFGLSGELALQSIA-SLSGGQKSRV 491 (582)
T ss_pred ---ceecchhHhhhhHHHHHhHHHHHHH-----H--hCCCCCHH----HHHHHHHhcCCCchhhhcccc-ccCCcchhHH
Confidence 1245556765433222222111110 0 11112233 355668999998777777754 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
++|.+...+|.+|+|||||++||.++...+.+.|+.+. ..||+||||.+++... |+.+++.++|++..
T Consensus 492 afA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---GGVv~VSHd~~fi~~~-c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 492 AFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---GGVVLVSHDEEFISSL-CKELWVVEDGKVTP 559 (582)
T ss_pred HHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---CcEEEEECcHHHHhhc-CceeEEEcCCcEEe
Confidence 99999999999999999999999999999999999883 3799999999999988 69999999999874
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.1e-26 Score=243.12 Aligned_cols=104 Identities=23% Similarity=0.393 Sum_probs=91.3
Q ss_pred HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHh---CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 020477 203 YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL---GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI 279 (325)
Q Consensus 203 ~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~---~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIiv 279 (325)
.+.++.+++....+++... +|||||+||+.||++|+. +|+++||||||+|||+..++.+++.|+++.++|.|||+|
T Consensus 809 l~~L~~~gL~~l~l~~~~~-tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPAT-TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHcCCCchhhcCccc-cCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567788886334566665 499999999999999997 599999999999999999999999999998778999999
Q ss_pred eCChhHHhhhCCcEEEEE------eCCEEEEEcCcc
Q 020477 280 THYRRLLEFIKPTFIHIM------EDGRIIKTGDAS 309 (325)
Q Consensus 280 tHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~ 309 (325)
|||++++. . +|++++| ++|+|++.|+++
T Consensus 888 ~H~~~~i~-~-aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 888 EHNLDVIK-T-ADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred eCCHHHHH-h-CCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999885 4 7999999 799999999875
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.95 E-value=3.7e-27 Score=223.25 Aligned_cols=189 Identities=28% Similarity=0.360 Sum_probs=140.8
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+++..++++.|++ ..|.-=.=+|..||+++++||||-||||++++|+|. .+|++|. ..+
T Consensus 341 ~lv~y~~~~k~~g~---F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~--ikPdeg~----~~~----------- 400 (591)
T COG1245 341 TLVEYPDLKKTYGD---FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGV--IKPDEGS----EED----------- 400 (591)
T ss_pred eeeecchheeecCc---eEEEecCCeeecceEEEEECCCCcchHHHHHHHhcc--ccCCCCC----Ccc-----------
Confidence 35566666666642 234444445677899999999999999999999997 7899997 111
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..+.|-||--.--...|+.+++....... +... ..-.++++-+.+. +++++++.+ |||||.|||+||
T Consensus 401 ~~vSyKPQyI~~~~~gtV~~~l~~~~~~~---~~~s--------~~~~ei~~pl~l~-~i~e~~v~~-LSGGELQRvaIa 467 (591)
T COG1245 401 LKVSYKPQYISPDYDGTVEDLLRSAIRSA---FGSS--------YFKTEIVKPLNLE-DLLERPVDE-LSGGELQRVAIA 467 (591)
T ss_pred ceEeecceeecCCCCCcHHHHHHHhhhhh---cccc--------hhHHhhcCccchH-HHHhccccc-CCchhHHHHHHH
Confidence 12455566433223457777654432211 1110 0123456777775 678888875 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
.||.++++++|||||+|.||.+.+-.+.+.|+++..+ ++|.++|.||+-++..+ +||++|++
T Consensus 468 a~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyv-sDr~ivF~ 530 (591)
T COG1245 468 AALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV-SDRLIVFE 530 (591)
T ss_pred HHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhh-hceEEEEe
Confidence 9999999999999999999999999999999999754 78999999999998887 69998875
No 392
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=4.4e-27 Score=207.45 Aligned_cols=173 Identities=18% Similarity=0.184 Sum_probs=117.5
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE--ECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV--FKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~--~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
.++++++++.+| +.+|+||||||||||+.+|... . .|+.. ..|..+..+-........+.+.|++...+..
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~--l---~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIG--L---GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHH--h---cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC-
Confidence 457788899887 8899999999999999998753 1 22221 1122111100000011235566666543320
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH----HhCCCEEEE
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA----VLGADLAIL 247 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL----~~~p~lLlL 247 (325)
... ......+.++++. .+..++.+. +||+|||||++||+|+ +.+|+++||
T Consensus 84 --------------------~~~-~~~~~~~~~~l~~----~~~~~~~~~-~lS~G~k~r~~ia~al~~~~~~~p~illl 137 (198)
T cd03276 84 --------------------PLC-VLSQDMARSFLTS----NKAAVRDVK-TLSGGERSFSTVCLLLSLWEVMESPFRCL 137 (198)
T ss_pred --------------------cCC-HHHHHHHHHHhcc----ccccCCccc-ccChhHHHHHHHHHHHHHhcccCCCEEEe
Confidence 000 0012334455554 234556665 4999999999999999 589999999
Q ss_pred eCcCcCCCHHHHHHHHHHHHhccCC---CcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 248 DEIDSGLDVDALRDVAKAVNGLLTP---KNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 248 DEPtsgLD~~~~~~i~~~L~~l~~~---g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
||||++||+..+..+.+.|.++.++ +.|||++||+++.+..+ |+|.+|+.++
T Consensus 138 DEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~--d~v~~~~~~~ 192 (198)
T cd03276 138 DEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS--DDVKVFRMKD 192 (198)
T ss_pred cCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc--cceeEEEecC
Confidence 9999999999999999999997543 35899999999998764 8999987643
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=2.3e-27 Score=216.16 Aligned_cols=198 Identities=17% Similarity=0.184 Sum_probs=121.2
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe-CCCCCHH-----
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN-LLEMEPE----- 151 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~-i~~~~~~----- 151 (325)
++++|. ++|.+ .. +|.+.++ +++|+||||||||||+.+|+++ ..+..|++...+.+ +-.....
T Consensus 4 i~l~nf-~~~~~--~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~--l~~~~~~~r~~~~~~~i~~~~~~~~~~ 72 (247)
T cd03275 4 LELENF-KSYKG--RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFV--LGEKSSHLRSKNLKDLIYRARVGKPDS 72 (247)
T ss_pred EEEECc-cccCC--Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHH--hCCCcccccccchhhhcccCccccCCC
Confidence 667776 45532 11 2333444 9999999999999999999997 34556776654321 1000000
Q ss_pred HHhhccEEEeccCCccCC-CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccc-------------c--
Q 020477 152 ERSLAGLFMSFQSPVEIP-GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD-------------F-- 215 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------~-- 215 (325)
......+.+..|++.... .....+.. ..+. ........ ..+.+.++.+++... +
T Consensus 73 ~~~~v~~~f~~~~~~~~~~~~~~~~~~-~~~~-----ingk~~s~----~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~ 142 (247)
T cd03275 73 NSAYVTAVYEDDDGEEKTFRRIITGGS-SSYR-----INGKVVSL----KEYNEELEKINILVKARNFLVFQGDVESIAS 142 (247)
T ss_pred ceEEEEEEEEcCCCcEEEEEEEEECCc-eEEE-----ECCEEecH----HHHHHHHHHhCCCCCCCeEEEECCchhhhhh
Confidence 011122333334322100 00000000 0000 00001111 223455666776311 1
Q ss_pred ------ccccCCCCCChHHHHHHHHHHHHHhC----CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020477 216 ------LNRNVNEGFSGGERKRNEILQLAVLG----ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL 285 (325)
Q Consensus 216 ------~~~~~~~~LSgGqrQRv~iAraL~~~----p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~ 285 (325)
.++.+. .||||||||++||+|++.+ |+++||||||++||+..+..+.+.|++++++|.+||+||||.++
T Consensus 143 ~~p~~~~~~~~~-~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~ 221 (247)
T cd03275 143 KNPPGKRFRDMD-NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF 221 (247)
T ss_pred ccCcchhhhhHH-HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH
Confidence 112224 5999999999999999875 89999999999999999999999999998778899999999887
Q ss_pred HhhhCCcEEEEEeC
Q 020477 286 LEFIKPTFIHIMED 299 (325)
Q Consensus 286 ~~~~~~d~i~vl~~ 299 (325)
+. . ||++++|.+
T Consensus 222 ~~-~-~d~i~~~~~ 233 (247)
T cd03275 222 FS-K-ADALVGVYR 233 (247)
T ss_pred Hh-h-CCeEEEEEe
Confidence 64 4 688888753
No 394
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.93 E-value=9.5e-25 Score=212.00 Aligned_cols=207 Identities=20% Similarity=0.241 Sum_probs=144.7
Q ss_pred CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
+...+|++++|+..=|+++..+++|+||+|.+|+-+.|.||||||||+|+|+|+|+ ++..+|++..-...-.
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL--Wp~~~G~l~k~~~~~~------ 500 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL--WPSTGGKLTKPTDGGP------ 500 (659)
T ss_pred cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc--cccCCCeEEecccCCC------
Confidence 34578999999999886556678899999999999999999999999999999998 6668999876443211
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH-----HhHHHHHHhcCCcc-ccccccCCCCCCh
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERLSMKT-DFLNRNVNEGFSG 226 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~-~~~~~~~~~~LSg 226 (325)
..+.|+||.|..-.+ |..+-+-.+...... .....++++.. .++..++++.|--. ....... ..||+
T Consensus 501 ---~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~-dvLS~ 573 (659)
T KOG0060|consen 501 ---KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWM-DVLSP 573 (659)
T ss_pred ---CceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHH-hhcCH
Confidence 347899999975433 433333222110000 00011122211 11222333333211 0111112 24999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
||+||+++||.+.++|++-||||-||++|.+.+..+.+.+++. |.|.|-|+|...+... . |.++-|+.
T Consensus 574 GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkSL~kf-H-d~~L~~~g 641 (659)
T KOG0060|consen 574 GEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKSLWKF-H-DYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHHHHhh-h-hEEEEecC
Confidence 9999999999999999999999999999999999999998765 8999999998776554 3 77777753
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.93 E-value=7.9e-25 Score=188.82 Aligned_cols=211 Identities=24% Similarity=0.266 Sum_probs=150.1
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
....|++.++.|+|+.. -+++-|+|++++.|....++|.||||||||||+|+|- .-...|.|.+.|.+.-.-+.-.-
T Consensus 10 ~~~aievsgl~f~y~~~-dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGK--hmv~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS-DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGK--HMVGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred ccceEEEeccEEecccC-CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCc--ccccCCeEEEcCcCccccccccc
Confidence 35579999999999864 4899999999999999999999999999999999994 33345899999986533111000
Q ss_pred hhccEEEec----------cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCC
Q 020477 154 SLAGLFMSF----------QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG 223 (325)
Q Consensus 154 ~~~~i~~~~----------Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 223 (325)
.....|.- -+..+...+++...+.. .+- ... + +-+.+++.+.+. +..+.+ .
T Consensus 87 -Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifg--------V~g--~dp-~---Rre~LI~iLDId---l~WRmH-k 147 (291)
T KOG2355|consen 87 -SGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFG--------VGG--DDP-E---RREKLIDILDID---LRWRMH-K 147 (291)
T ss_pred -cCceeEecccccccccccccccccccccHHHHHhh--------ccC--CCh-h---Hhhhhhhheecc---ceEEEe-e
Confidence 00011110 01111112333322211 111 111 1 222344555553 122333 4
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
+|-|||+||.|++.|++.=++|+|||-|--||..++..+++.+++-.++ |.|||++||-.+-++.. +.+++.|.+|++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~W-pthl~yi~~Gkl 226 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETW-PTHLVYIKSGKL 226 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhc-chhEEEecCCee
Confidence 9999999999999999999999999999999999999999999998754 88999999998888876 689999999999
Q ss_pred EEEcC
Q 020477 303 IKTGD 307 (325)
Q Consensus 303 v~~g~ 307 (325)
+..-+
T Consensus 227 ~~~l~ 231 (291)
T KOG2355|consen 227 VDNLK 231 (291)
T ss_pred eeccc
Confidence 86433
No 396
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=1.1e-23 Score=220.68 Aligned_cols=224 Identities=26% Similarity=0.343 Sum_probs=175.0
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG 170 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~ 170 (325)
..+|+|+|.-+++|+.+.++||-|||||||+++++|-.. ..-..|+|.+||.+.....+ +..++|..|+...++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~----~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP----KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc----CceEEeccccccccce
Confidence 469999999999999999999999999999999999521 12235799999998876544 3457888999999999
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCChHHHHH-hHHHHHHhcCCccccccccCC----CCCChHHHHHHHHHHHHHhCCCEE
Q 020477 171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYA-YLYPKLERLSMKTDFLNRNVN----EGFSGGERKRNEILQLAVLGADLA 245 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~----~~LSgGqrQRv~iAraL~~~p~lL 245 (325)
+|+.+.+.+....+.......+..+.+... ..+.+++.+|++ +..+..++ .+.|||||+||.+|-+++.+++++
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~-~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLD-HCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCch-hhccceecccccccccCcccceeeeeeeeecCccee
Confidence 999998888765443222222233333222 344578889996 44554443 359999999999999999999999
Q ss_pred EEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhH-HhhhCCcEEEEEeCCEEEEEcCccH-HHHHHhCCeec
Q 020477 246 ILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTGDASI-ATVLEEGGYKA 321 (325)
Q Consensus 246 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~-~~~~~~d~i~vl~~G~iv~~g~~~~-~~~~~~~~~~~ 321 (325)
.+||+|.|||..+.-++.+.|+++.+. +.|++++-|.... +-.. -|.|++|.+|++++.|+.+. ....++.|+.+
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~l-FD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~c 360 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDL-FDDVILLSEGYQIYQGPRDEVLPYFEDMGFKC 360 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHh-hhheeeeeccceEEeccHHHHHHHHHhcCccC
Confidence 999999999999999999999999764 7788888887542 3333 48899999999999999874 46677777754
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.90 E-value=1e-23 Score=186.28 Aligned_cols=147 Identities=22% Similarity=0.196 Sum_probs=105.9
Q ss_pred ceeeeEEEEeCCC-EEEEEcCCCccHHHHHHHHh--------CCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccC
Q 020477 94 ILKGVNLLVNEGE-VHAIMGKNGSGKSTLSKVLV--------GHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQS 164 (325)
Q Consensus 94 iL~~vsl~i~~Ge-~~~lvG~NGsGKSTLl~~l~--------Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~ 164 (325)
.+.++||++.+|+ +++|+||||||||||+|+|+ |. +-|....+ .+++..|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~--~vp~~~~~------------------~~~~~~~~ 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGL--PIPAAEGS------------------SLPVFENI 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCC--Cccccccc------------------cCcCccEE
Confidence 4667999999995 79999999999999999998 43 22221100 01111111
Q ss_pred CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCE
Q 020477 165 PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244 (325)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~l 244 (325)
.. .++.. +..+.... .+|+||+|++.|++++ .+|++
T Consensus 76 ~~-----------------------------------------~lg~~-~~l~~~~s-~fs~g~~~~~~i~~~~-~~p~l 111 (200)
T cd03280 76 FA-----------------------------------------DIGDE-QSIEQSLS-TFSSHMKNIARILQHA-DPDSL 111 (200)
T ss_pred EE-----------------------------------------ecCch-hhhhcCcc-hHHHHHHHHHHHHHhC-CCCcE
Confidence 10 00000 11222233 4999999999999884 89999
Q ss_pred EEEeCcCcCCCHHHHHHHH-HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 245 AILDEIDSGLDVDALRDVA-KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 245 LlLDEPtsgLD~~~~~~i~-~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
+|+||||+|||+..+..+. ..++++.+.+.++|++||+.++. .. +|++.+|++|+++.++
T Consensus 112 lllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~-~~-~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 112 VLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELK-AY-AYKREGVENASMEFDP 172 (200)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHH-HH-HhcCCCeEEEEEEEec
Confidence 9999999999999999996 46777766688999999996544 45 5899999999998764
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=8.5e-23 Score=182.12 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=69.7
Q ss_pred ccccCCCCCChHHHHHHHHHHHH----HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-C-cEEEEEeCChhHHhhh
Q 020477 216 LNRNVNEGFSGGERKRNEILQLA----VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-K-NSLLMITHYRRLLEFI 289 (325)
Q Consensus 216 ~~~~~~~~LSgGqrQRv~iAraL----~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tvIivtHd~~~~~~~ 289 (325)
.+..+. .||||||||+.+|++| +.+|+++|+||||++||+.+++.+++.|.++.++ | .|+|++|||+......
T Consensus 120 ~~~~~~-~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 120 QELDPH-HQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred cccchh-hccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence 344444 4999999999887655 4799999999999999999999999999998765 5 4899999997666554
Q ss_pred C-CcEEEEEeCCEE
Q 020477 290 K-PTFIHIMEDGRI 302 (325)
Q Consensus 290 ~-~d~i~vl~~G~i 302 (325)
+ ..+|++|++|+-
T Consensus 199 ~~~~~v~~l~~g~~ 212 (213)
T cd03277 199 HEKMTVLCVYNGPH 212 (213)
T ss_pred cCceEEEEEecCcc
Confidence 2 347888888863
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.89 E-value=3.8e-23 Score=194.17 Aligned_cols=184 Identities=22% Similarity=0.381 Sum_probs=141.3
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC------CCCCCCccEEEECCEeCCCCCHHHHhhccEEEecc--
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH------PDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQ-- 163 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl------~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q-- 163 (325)
..+|+|+||+|++|++++|+|+||||||||+++|+|. ..|+|++|.|.+--..+.. ++|-
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a------------~iPge~ 463 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA------------LIPGEY 463 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhh------------ccCccc
Confidence 4589999999999999999999999999999999994 2478999998875332211 1221
Q ss_pred CCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC
Q 020477 164 SPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD 243 (325)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~ 243 (325)
+|. |...+.++.+.. ..++. ..+.++|.+.|+....+.+...+.||-|||.|+-||+++...|.
T Consensus 464 Ep~-f~~~tilehl~s-------~tGD~--------~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn 527 (593)
T COG2401 464 EPE-FGEVTILEHLRS-------KTGDL--------NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPN 527 (593)
T ss_pred ccc-cCchhHHHHHhh-------ccCch--------hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCC
Confidence 121 222233322211 11211 23456788999976655555445699999999999999999999
Q ss_pred EEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 244 LAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 244 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
+++.||-.|+||+.+...+..-|.+++++ |.|++++||+.++...+..|.++.+.-|...
T Consensus 528 ~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 528 VLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred cEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999999999999999999999855 8999999999999998888998887766653
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=5.2e-23 Score=195.19 Aligned_cols=201 Identities=23% Similarity=0.357 Sum_probs=130.5
Q ss_pred EEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEe
Q 020477 82 GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161 (325)
Q Consensus 82 ~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~ 161 (325)
++..+|+.++ ..|..+- ...+|.++||+|+||-||||-+|+|+|. ..|.=|+- ++. ..+..-..+..+ --
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGe--l~PNLG~~--~~p--p~wdeVi~~FrG--tE 148 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGE--LKPNLGRY--EDP--PSWDEVIKRFRG--TE 148 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCc--cccCCCCC--CCC--CCHHHHHHHhhh--hH
Confidence 3566786432 2222221 3478999999999999999999999996 56766632 221 111111111111 00
Q ss_pred ccCCc--cCCC-c---chHHHHHHHHHHHhhhcCCC-C-CChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 162 FQSPV--EIPG-V---NNIDFLHMAYNARRRKLGQP-E-IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 162 ~Q~~~--~~~~-~---~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
.|+.. ++.+ + .-.+++...-... .+.- + ....+......++++++++. +.+++.+.+ |||||-||++
T Consensus 149 Lq~YF~~l~~g~~r~v~K~QYVd~iPk~~---KG~v~elLk~~de~g~~devve~l~L~-nvl~r~v~~-LSGGELQr~a 223 (591)
T COG1245 149 LQNYFKKLYEGELRAVHKPQYVDLIPKVV---KGKVGELLKKVDERGKFDEVVERLGLE-NVLDRDVSE-LSGGELQRVA 223 (591)
T ss_pred HHHHHHHHHcCCcceecchHHHHHHHHHh---cchHHHHHHhhhhcCcHHHHHHHhcch-hhhhhhhhh-cCchHHHHHH
Confidence 01110 0000 0 0001111110000 0000 0 00011113466788999996 688999975 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
||.|++++++++++|||||-||...+-...+.++++.+.+++||+|.||+..+..+ +|.|.++.
T Consensus 224 Iaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~l-sD~vhI~Y 287 (591)
T COG1245 224 IAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYL-SDFVHILY 287 (591)
T ss_pred HHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHh-hheeEEEe
Confidence 99999999999999999999999999999999999988789999999999988877 69998886
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.88 E-value=5.7e-22 Score=172.03 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 224 FSGGERKRNEILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 224 LSgGqrQRv~iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
|||||+||++|||+++ .+|+++|+|||+++||+..++.+.+.|.++.++|.|+|++||+++.+. . +|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~-adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-N-ADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-h-CCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998766789999999998775 3 699988764
No 402
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.1e-22 Score=192.13 Aligned_cols=220 Identities=19% Similarity=0.245 Sum_probs=150.1
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC-CCCCCCccEEEECCEeCCCCC-HHH-
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH-PDYEVTEGSVVFKGENLLEME-PEE- 152 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl-~~~~p~~G~I~~~g~~i~~~~-~~~- 152 (325)
.-|.++|.+.+-. ++.++.|.|+.|-.|..|+||||||-||||||+-|+.- +.++| .=.|++..+.+..-+ ...
T Consensus 263 ~DIKiEnF~ISA~--Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~Ai~ 339 (807)
T KOG0066|consen 263 MDIKIENFDISAQ--GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTSAID 339 (807)
T ss_pred ccceeeeeeeecc--cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcHHHH
Confidence 3588999988764 46799999999999999999999999999999999873 12333 334555554432111 000
Q ss_pred ---Hh-hccEEEeccCC-----ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCC
Q 020477 153 ---RS-LAGLFMSFQSP-----VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG 223 (325)
Q Consensus 153 ---~~-~~~i~~~~Q~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 223 (325)
+. .....+.-... ..-...++.+.+.-.+...+ ..+. .....+++.+|..+|++.+.-+++.. .
T Consensus 340 tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELr-aiGA-----~sAEarARRILAGLGFskEMQ~rPt~-k 412 (807)
T KOG0066|consen 340 TVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELR-AIGA-----DSAEARARRILAGLGFSKEMQERPTT-K 412 (807)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH-Hhcc-----ccchhHHHHHHhhcCCChhHhcCCcc-c
Confidence 00 00000000000 00111233333332222111 1111 12234567788999998776666665 5
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
+|||-|.||+|||||..+|-+|.|||||++||....-++-++|..|+ +|++|||||..++..+| ..|+-|++-++.
T Consensus 413 FSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgFLD~VC-tdIIHLD~qkLh 488 (807)
T KOG0066|consen 413 FSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGFLDSVC-TDIIHLDNQKLH 488 (807)
T ss_pred cCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccchHHHHH-HHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999885 69999999999999985 567788887775
Q ss_pred E-EcCcc
Q 020477 304 K-TGDAS 309 (325)
Q Consensus 304 ~-~g~~~ 309 (325)
+ .|+..
T Consensus 489 yYrGNY~ 495 (807)
T KOG0066|consen 489 YYRGNYT 495 (807)
T ss_pred hhcchHH
Confidence 3 45543
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.1e-22 Score=182.91 Aligned_cols=76 Identities=28% Similarity=0.350 Sum_probs=66.8
Q ss_pred CCChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 223 GFSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
.|||||+||++||++++. +|+++||||||++||+..+..+.+.|+++.+ +.|+|++||++... .. +|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~-~~-~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVA-AM-ADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHH-Hh-cCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999864 67999999999865 44 68888887
Q ss_pred CCE
Q 020477 299 DGR 301 (325)
Q Consensus 299 ~G~ 301 (325)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.86 E-value=8e-22 Score=168.49 Aligned_cols=75 Identities=31% Similarity=0.425 Sum_probs=67.4
Q ss_pred CCChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 223 GFSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
+||+||+||++||++|.. +|+++|+|||++|+|+..+..+.+.+.++.+++.++|++||+.++... +|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~--~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL--ADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh--hhhEEEEE
Confidence 399999999999999987 789999999999999999999999999886557899999999998865 58888885
Q ss_pred C
Q 020477 299 D 299 (325)
Q Consensus 299 ~ 299 (325)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 405
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.86 E-value=5.3e-21 Score=184.10 Aligned_cols=186 Identities=24% Similarity=0.302 Sum_probs=126.6
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
-|.++|+-+--+. +..++..++|+|++|-.+.|+||||||||+|+|+|.|+ ++...|...+- + ..
T Consensus 481 gI~lenIpvItP~-~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL--WPvy~g~L~~P--------~----~~ 545 (728)
T KOG0064|consen 481 GIILENIPVITPA-GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL--WPVYNGLLSIP--------R----PN 545 (728)
T ss_pred ceEEecCceeccC-cceeecceeEEecCCceEEEECCCCccHHHHHHHHhcc--CcccCCeeecC--------C----Cc
Confidence 3888888887775 45688999999999999999999999999999999997 55555544321 1 12
Q ss_pred cEEEeccCCccCCCcchHHHHHHHH---HHHhhhcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAY---NARRRKLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGE 228 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGq 228 (325)
.+.|+||.|+.- .-|..+.+-.+- ..+.+ + ..+.+.... ++.++++-+- .+.....-. -|||||
T Consensus 546 ~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~k--g---~~d~dL~~iL~~v~L~~i~qr~~g-~da~~dWkd-~LsgGe 617 (728)
T KOG0064|consen 546 NIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRK--G---YTDQDLEAILDIVHLEHILQREGG-WDAVRDWKD-VLSGGE 617 (728)
T ss_pred ceEeccCCCccC-cCcccceeecCCcHHHHHhc--C---CCHHHHHHHHHHhhHHHHHHhccC-hhhhccHHh-hccchH
Confidence 378999999643 112221111100 01111 1 112221111 1122222211 111111222 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF 288 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~ 288 (325)
|||+++||.+.++|+.-+|||-||+..+..+..+.+..++. |.+.|-|||.+.+...
T Consensus 618 kQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~---gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 618 KQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA---GISLLSITHRPSLWKY 674 (728)
T ss_pred HHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc---CceEEEeecCccHHHH
Confidence 99999999999999999999999999999999999988764 8999999999987654
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.85 E-value=2.7e-20 Score=203.52 Aligned_cols=107 Identities=22% Similarity=0.262 Sum_probs=93.2
Q ss_pred HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhC---CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEE
Q 020477 202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG---ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLM 278 (325)
Q Consensus 202 ~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~---p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIi 278 (325)
..+.|..+|+++=.+.++.. +|||||.||+-||.-|..+ +.++||||||.||++...+.+++.|++|.+.|.|||+
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~-tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tviv 1757 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLS-SLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCC-ccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 34567889998655556665 5999999999999999865 7899999999999999999999999999988999999
Q ss_pred EeCChhHHhhhCCcEEEEE------eCCEEEEEcCccHH
Q 020477 279 ITHYRRLLEFIKPTFIHIM------EDGRIIKTGDASIA 311 (325)
Q Consensus 279 vtHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~~ 311 (325)
|+||++++.. ||+|+-| ..|+|++.|+|+..
T Consensus 1758 ieH~~~~i~~--aD~iidlgp~gG~~GG~iva~Gtp~~i 1794 (1809)
T PRK00635 1758 IDHDPALLKQ--ADYLIEMGPGSGKTGGKILFSGPPKDI 1794 (1809)
T ss_pred EeCCHHHHHh--CCEEEEcCCCcccCCCEEEEEeCHHHH
Confidence 9999999886 6999877 35899999999753
No 407
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.84 E-value=3.5e-21 Score=169.98 Aligned_cols=140 Identities=17% Similarity=0.124 Sum_probs=93.6
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
+.+++|++|+. |++++|+||||||||||+|+|+|.. + +.+.|.++... .+++|...+|+.+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~-~------l~~~G~~v~a~----------~~~~q~~~l~~~~ 74 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV-I------LAQAGAPVCAS----------SFELPPVKIFTSI 74 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH-H------HHHcCCEEecC----------ccCcccceEEEec
Confidence 45778777765 7999999999999999999999852 1 22344443221 1335654566666
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID 251 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt 251 (325)
++.+++...... ...+. .++.++++.++. .+|+++|+||||
T Consensus 75 ~~~d~l~~~~s~----------~~~e~-~~~~~iL~~~~~----------------------------~~p~llllDEp~ 115 (199)
T cd03283 75 RVSDDLRDGISY----------FYAEL-RRLKEIVEKAKK----------------------------GEPVLFLLDEIF 115 (199)
T ss_pred cchhccccccCh----------HHHHH-HHHHHHHHhccC----------------------------CCCeEEEEeccc
Confidence 666554332110 00111 223333433320 599999999999
Q ss_pred cCCCHHHHHHHH-HHHHhccCCCcEEEEEeCChhHHhhh
Q 020477 252 SGLDVDALRDVA-KAVNGLLTPKNSLLMITHYRRLLEFI 289 (325)
Q Consensus 252 sgLD~~~~~~i~-~~L~~l~~~g~tvIivtHd~~~~~~~ 289 (325)
+|+|+.....+. .+++++.+.+.|+|++||+++++...
T Consensus 116 ~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 116 KGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 999999988775 46777766688999999999988654
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.83 E-value=1.2e-20 Score=169.17 Aligned_cols=153 Identities=21% Similarity=0.145 Sum_probs=107.2
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
+.+.+|+++++.+|++++|.||||+|||||+++++=. ....+.+. ++|.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~----------------------~~la~~g~-~vpa~~~~~~-- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI----------------------VLMAQIGC-FVPCDSADIP-- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH----------------------HHHHHhCC-CcCcccEEEe--
Confidence 5689999999999999999999999999999998721 00111111 2333221110
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH--HhCCCEEEEeC
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA--VLGADLAILDE 249 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL--~~~p~lLlLDE 249 (325)
.+.+++.++++... . . ..+|.|++|++.+++++ +.+|+++||||
T Consensus 72 -----------------------------~~~~il~~~~l~d~-~---~-~~lS~~~~e~~~~a~il~~~~~~sLvLLDE 117 (222)
T cd03285 72 -----------------------------IVDCILARVGASDS-Q---L-KGVSTFMAEMLETAAILKSATENSLIIIDE 117 (222)
T ss_pred -----------------------------ccceeEeeeccccc-h---h-cCcChHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 01112344454321 1 2 35999999999999999 89999999999
Q ss_pred c---CcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 250 I---DSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 250 P---tsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
| |++||+.+..+.. ++.+.+ .+.++|++||+. .+..+ +|++..+++|++...+.
T Consensus 118 p~~gT~~lD~~~~~~~i--l~~l~~~~~~~vlisTH~~-el~~~-~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 118 LGRGTSTYDGFGLAWAI--AEYIATQIKCFCLFATHFH-ELTAL-ADEVPNVKNLHVTALTD 175 (222)
T ss_pred CcCCCChHHHHHHHHHH--HHHHHhcCCCeEEEEechH-HHHHH-hhcCCCeEEEEEEEEEe
Confidence 9 9999998886543 233332 478999999974 45555 58888899999876653
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.7e-19 Score=178.94 Aligned_cols=106 Identities=22% Similarity=0.360 Sum_probs=91.2
Q ss_pred HHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 020477 204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280 (325)
Q Consensus 204 ~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivt 280 (325)
+.|..+|+++=.+-++. .+|||||.|||-||.-|..+. -++||||||.||-..-.+.+++.|.+|...|.|||+|.
T Consensus 804 qtL~dVGLgYi~LGQpa-tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIE 882 (935)
T COG0178 804 QTLVDVGLGYIKLGQPA-TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882 (935)
T ss_pred HHHHHcCcceEecCCcc-ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45677888754444444 459999999999999999887 99999999999999999999999999999999999999
Q ss_pred CChhHHhhhCCcEEEEE------eCCEEEEEcCccHHH
Q 020477 281 HYRRLLEFIKPTFIHIM------EDGRIIKTGDASIAT 312 (325)
Q Consensus 281 Hd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~~~ 312 (325)
|+++.+.. ||+|+=| ..|+|++.|+|+...
T Consensus 883 HNLdVIk~--AD~IIDLGPeGG~~GG~iva~GTPeeva 918 (935)
T COG0178 883 HNLDVIKT--ADWIIDLGPEGGDGGGEIVASGTPEEVA 918 (935)
T ss_pred cccceEee--cCEEEEcCCCCCCCCceEEEecCHHHHH
Confidence 99998875 6998776 468999999997543
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=9.8e-20 Score=168.11 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=63.0
Q ss_pred CCChHHHHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhC--C
Q 020477 223 GFSGGERKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK--P 291 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~--~ 291 (325)
.+|+||+|+++||++|+ .+|+++||||||++||+..++.+.+.|.++. .+++++|+.+.+..++ .
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~~~~~~~~~ 258 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLADFDALWLRR 258 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchhccchhccC
Confidence 38999999999999985 6999999999999999999999999998763 3566666666665542 3
Q ss_pred cEEEEEeCCEE
Q 020477 292 TFIHIMEDGRI 302 (325)
Q Consensus 292 d~i~vl~~G~i 302 (325)
.+++.+++|++
T Consensus 259 ~~i~~l~~g~i 269 (270)
T cd03242 259 AQIFRVDAGTL 269 (270)
T ss_pred ccEEEEeCcEE
Confidence 57888999986
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.82 E-value=4.2e-20 Score=163.35 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=65.8
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH-HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK-AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
.+|++++| +..+.+++.+|+++|+||||+|+|+.....+.. +++.+.+.+.++|++||+.+++.. ++++..+..|+
T Consensus 91 ~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~--~~~~~~l~~~~ 167 (202)
T cd03243 91 TFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADL--PEQVPGVKNLH 167 (202)
T ss_pred eHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHH--hhcCCCeEEEE
Confidence 37777665 666677889999999999999999998887765 466666668899999999888775 36777788888
Q ss_pred EEEEcCc
Q 020477 302 IIKTGDA 308 (325)
Q Consensus 302 iv~~g~~ 308 (325)
+...+..
T Consensus 168 ~~~~~~~ 174 (202)
T cd03243 168 MEELITT 174 (202)
T ss_pred EEEEecC
Confidence 8877653
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.81 E-value=8.3e-20 Score=161.72 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=96.4
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
+.+.+|++|++++|++++|+||||+|||||+++++++. .+.+.+. ++ |..+..+
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------------~la~~G~-~v---pa~~~~l 69 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA----------------------IMAQIGC-FV---PAEYATL 69 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH----------------------HHHHcCC-Cc---chhhcCc
Confidence 57899999999999999999999999999999999851 1111111 11 1111111
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID 251 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt 251 (325)
+..+.+ +..++.. +...+..+ .+|+|++|+ ..+.+++.+|+++|||||+
T Consensus 70 ~~~d~I----------------------------~~~~~~~-d~~~~~~S-~fs~e~~~~-~~il~~~~~~~lvllDE~~ 118 (204)
T cd03282 70 PIFNRL----------------------------LSRLSND-DSMERNLS-TFASEMSET-AYILDYADGDSLVLIDELG 118 (204)
T ss_pred cChhhe----------------------------eEecCCc-cccchhhh-HHHHHHHHH-HHHHHhcCCCcEEEecccc
Confidence 221111 1122221 11223333 499999976 4556688999999999999
Q ss_pred cCCCHHHHHHH-HHHHHhccCCCcEEEEEeCChhHHhhh
Q 020477 252 SGLDVDALRDV-AKAVNGLLTPKNSLLMITHYRRLLEFI 289 (325)
Q Consensus 252 sgLD~~~~~~i-~~~L~~l~~~g~tvIivtHd~~~~~~~ 289 (325)
+|+|+.....+ ...+..+.+.+.++|++||+.+++...
T Consensus 119 ~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 119 RGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 99999765554 455666666688999999999988765
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.81 E-value=9.1e-20 Score=191.61 Aligned_cols=103 Identities=21% Similarity=0.308 Sum_probs=92.2
Q ss_pred HHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020477 205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY 282 (325)
Q Consensus 205 ~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd 282 (325)
.++.+|+..-.+++.+.+ |||||+|||+||+||+.+| ++|||||||+|||+...+.++++|+++++.|.|||+|+||
T Consensus 472 ~L~~vGL~~l~l~r~~~~-LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HhhccccCCCCCCCchhh-CCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 678888863226788775 9999999999999999997 9999999999999999999999999998779999999999
Q ss_pred hhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 283 RRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 283 ~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
++++. . ||+|++| ++|+|++.|+++.
T Consensus 551 ~~~i~-~-aD~vi~LgpgaG~~~G~iv~~g~~~e 582 (943)
T PRK00349 551 EDTIR-A-ADYIVDIGPGAGVHGGEVVASGTPEE 582 (943)
T ss_pred HHHHH-h-CCEEEEeccccCCCCCEEeeccCHHH
Confidence 99886 4 7999999 9999999998754
No 414
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=1.7e-19 Score=189.16 Aligned_cols=103 Identities=19% Similarity=0.295 Sum_probs=91.1
Q ss_pred HHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020477 205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY 282 (325)
Q Consensus 205 ~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd 282 (325)
.+..+|+..-.+++.+.+ |||||+|||.||+||+.+| ++|||||||+|||+...+.++++|++++++|.|||+|+||
T Consensus 470 ~L~~vgL~~l~l~r~~~t-LSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGT-LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred hHhhccccccccCCCcCc-CCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 467788853225777764 9999999999999999986 8999999999999999999999999998789999999999
Q ss_pred hhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 283 RRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 283 ~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
++++. . ||+|++| ++|+|++.|+++.
T Consensus 549 ~~~i~-~-aD~vi~LgpgaG~~~G~Iv~~g~~~e 580 (924)
T TIGR00630 549 EETIR-A-ADYVIDIGPGAGIHGGEVVASGTPEE 580 (924)
T ss_pred HHHHh-h-CCEEEEecccccCCCCEEeeccCHHH
Confidence 99886 4 7999999 8999999998753
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.74 E-value=1.6e-17 Score=156.92 Aligned_cols=182 Identities=19% Similarity=0.309 Sum_probs=124.9
Q ss_pred EEECCCcccceeeeEEEEeCCC-----EEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccE
Q 020477 85 AVIAESKQEILKGVNLLVNEGE-----VHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGL 158 (325)
Q Consensus 85 ~~y~~~~~~iL~~vsl~i~~Ge-----~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i 158 (325)
++|++ .+..+.+..|.|+.|+ ++..+|+||.|||||+++++|. .+|++| +|-... +
T Consensus 343 y~Yp~-m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~--~~pd~~~e~p~ln---------------V 404 (592)
T KOG0063|consen 343 YSYPK-MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGR--LKPDEGGEIPVLN---------------V 404 (592)
T ss_pred eccCc-ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcC--CCCCccCcccccc---------------e
Confidence 44664 3556788899999885 7899999999999999999996 567765 332222 2
Q ss_pred EEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH
Q 020477 159 FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238 (325)
Q Consensus 159 ~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL 238 (325)
.|-+|...--...++...+..-.+. .+.. . .-+.+.++-+.++ +..++.+. +|||||.|||+||.+|
T Consensus 405 SykpqkispK~~~tvR~ll~~kIr~---ay~~-----p---qF~~dvmkpL~ie-~i~dqevq-~lSggelQRval~KOG 471 (592)
T KOG0063|consen 405 SYKPQKISPKREGTVRQLLHTKIRD---AYMH-----P---QFVNDVMKPLQIE-NIIDQEVQ-GLSGGELQRVALALCL 471 (592)
T ss_pred eccccccCccccchHHHHHHHHhHh---hhcC-----H---HHHHhhhhhhhHH-HHHhHHhh-cCCchhhHHHHHHHhc
Confidence 2323332111112344333221110 0000 0 1123344555553 45666665 4999999999999999
Q ss_pred HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 239 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
=..+++++.|||.+-||.+.+......++++. ..++|-.+|.||.-.+... +||+++.+
T Consensus 472 GKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYl-adrvivf~ 531 (592)
T KOG0063|consen 472 GKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVFE 531 (592)
T ss_pred CCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhh-cceeEEEe
Confidence 99999999999999999999998888888874 4467889999987766665 79998764
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.69 E-value=9.1e-17 Score=143.60 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=90.1
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
+.+.++++|++.+ ++++|+||||||||||+|+++++. +-...|. .+ +.. . ..+.++.| +++.+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~-~l~~~g~------~v---p~~-~--~~i~~~~~---i~~~~ 80 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA-LLAQIGS------FV---PAS-K--AEIGVVDR---IFTRI 80 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH-HHhccCC------ee---ccc-c--ceecceee---EeccC
Confidence 4588999999987 999999999999999999998852 1112221 11 001 0 11222211 11111
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH----HHHHHHHHH--hCCCEE
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK----RNEILQLAV--LGADLA 245 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ----Rv~iAraL~--~~p~lL 245 (325)
++. +++|.|+.+ ++.|++++. .+|+++
T Consensus 81 ~~~-----------------------------------------------~~ls~g~s~f~~e~~~l~~~l~~~~~~~ll 113 (216)
T cd03284 81 GAS-----------------------------------------------DDLAGGRSTFMVEMVETANILNNATERSLV 113 (216)
T ss_pred Cch-----------------------------------------------hhhccCcchHHHHHHHHHHHHHhCCCCeEE
Confidence 110 124444433 344666654 699999
Q ss_pred EEeCc---CcCCCHHHH-HHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 246 ILDEI---DSGLDVDAL-RDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 246 lLDEP---tsgLD~~~~-~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||||| |+++|.... ..+++.| .+. +.++|++||+.++.. + ++++..+++|++...+.
T Consensus 114 llDEp~~gt~~lD~~~~~~~il~~l---~~~~~~~vi~~TH~~~l~~-l-~~~~~~v~~~~~~~~~~ 175 (216)
T cd03284 114 LLDEIGRGTSTYDGLSIAWAIVEYL---HEKIGAKTLFATHYHELTE-L-EGKLPRVKNFHVAVKEK 175 (216)
T ss_pred EEecCCCCCChHHHHHHHHHHHHHH---HhccCCcEEEEeCcHHHHH-H-hhcCCCeEEEEEEEEee
Confidence 99999 999998653 3334444 444 679999999976554 4 46655566777665443
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.69 E-value=2.9e-16 Score=144.47 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=86.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH-HHHhhccEEEeccCCccCCCcchHHHHHHHHHHH
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP-EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR 184 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~-~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~ 184 (325)
.-++|+||||||||||+++|+|+ +.|++|+|.++|+++...+. .+... .+.+++|+. ....+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~--~~~~~G~i~~~g~~v~~~d~~~ei~~-~~~~~~q~~-~~~r~~v----------- 176 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI--LSTGISQLGLRGKKVGIVDERSEIAG-CVNGVPQHD-VGIRTDV----------- 176 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc--cCCCCceEEECCEEeecchhHHHHHH-Hhccccccc-ccccccc-----------
Confidence 56899999999999999999998 67899999999999865432 22221 233444432 1111111
Q ss_pred hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH
Q 020477 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK 264 (325)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~ 264 (325)
++ +=.|.....+.+.+++|+++|+|||++ .+.+..
T Consensus 177 -------------------------------~~--------~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~ 211 (270)
T TIGR02858 177 -------------------------------LD--------GCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEA 211 (270)
T ss_pred -------------------------------cc--------cchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHH
Confidence 00 001111123333346999999999974 333444
Q ss_pred HHHhccCCCcEEEEEeCChhHHhh------------hCCcEEEEEeCCE
Q 020477 265 AVNGLLTPKNSLLMITHYRRLLEF------------IKPTFIHIMEDGR 301 (325)
Q Consensus 265 ~L~~l~~~g~tvIivtHd~~~~~~------------~~~d~i~vl~~G~ 301 (325)
+++.+. .|.++|++||+...... -.++|+++|++|+
T Consensus 212 l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 212 LLEALH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHHh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 555443 58899999998665221 2269999998776
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.68 E-value=3.6e-15 Score=143.14 Aligned_cols=77 Identities=22% Similarity=0.181 Sum_probs=65.9
Q ss_pred CCChHHHHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhC-Cc
Q 020477 223 GFSGGERKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK-PT 292 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~-~d 292 (325)
.+|.||+|+++||++|+ .+|+|||||||+++||+..++.+.+.|.++ +..++++||+.+.+...+ .+
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhhccC
Confidence 48999999999999996 699999999999999999999999999765 347899999887665542 35
Q ss_pred EEEEEeCCEE
Q 020477 293 FIHIMEDGRI 302 (325)
Q Consensus 293 ~i~vl~~G~i 302 (325)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 7888999987
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.65 E-value=3.7e-16 Score=136.34 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHHHHh--CCCEEEEeCcCcCCCHHHHHHHH-HHHHhccCC-CcEEEEEeCChhHHh
Q 020477 223 GFSGGERKRNEILQLAVL--GADLAILDEIDSGLDVDALRDVA-KAVNGLLTP-KNSLLMITHYRRLLE 287 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~--~p~lLlLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tvIivtHd~~~~~ 287 (325)
.||+|++| +++++.. +|+++|+|||++|+|+.....+. .+++.+.++ +.++|++||+.++..
T Consensus 61 ~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 61 TFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred HHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 48888887 4455544 99999999999999999777765 556666653 789999999997554
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.65 E-value=1.1e-15 Score=136.33 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHH-HHHHHHHHhccCC---CcEEEEEeCChhHHhhh
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDAL-RDVAKAVNGLLTP---KNSLLMITHYRRLLEFI 289 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~-~~i~~~L~~l~~~---g~tvIivtHd~~~~~~~ 289 (325)
.-+.||+++|++++.+|+++|||||++|+|+... ..+...++.+.+. +.++|++||+.+++...
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 4678999999999999999999999999999754 4445677777643 24899999999988765
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.64 E-value=4.6e-16 Score=161.63 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=98.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCC-CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEG-EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~G-e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+.++++..-+-. ..-.-.+|+++..+ ++++|+||||+|||||+|+|+|.. +.+..|-
T Consensus 295 ~i~l~~~rhPll~--~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~-l~aq~G~------------------ 353 (771)
T TIGR01069 295 KIILENARHPLLK--EPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLA-LMFQSGI------------------ 353 (771)
T ss_pred CEEEccccCceec--CCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHH-HHHHhCC------------------
Confidence 5777766532211 00122378899887 899999999999999999999851 2233441
Q ss_pred ccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 156 AGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 156 ~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
++|.... .++. .+.+ + ..++.. +....... +||+|+++++.|
T Consensus 354 ----~Vpa~~~~~~~~---~d~i---~-------------------------~~i~~~-~si~~~LS-tfS~~m~~~~~i 396 (771)
T TIGR01069 354 ----PIPANEHSEIPY---FEEI---F-------------------------ADIGDE-QSIEQNLS-TFSGHMKNISAI 396 (771)
T ss_pred ----CccCCccccccc---hhhe---e-------------------------eecChH-hHHhhhhh-HHHHHHHHHHHH
Confidence 1111110 0000 0000 0 000000 00111222 499999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHH-HHHHHhccCCCcEEEEEeCChhHHh
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDV-AKAVNGLLTPKNSLLMITHYRRLLE 287 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i-~~~L~~l~~~g~tvIivtHd~~~~~ 287 (325)
++++ .+|+++|||||++|+|+.....+ ..++..+.+.|.++|++||+.++..
T Consensus 397 l~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 397 LSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 8876 78999999999999999999998 4677777767889999999987644
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.62 E-value=4.7e-16 Score=138.93 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=61.6
Q ss_pred hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEE
Q 020477 201 YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSL 276 (325)
Q Consensus 201 ~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv 276 (325)
.+.+.+....+..+ .||||||.+++||--|+ ...+++|||||.++||...+..+.++|+++.++ .-+
T Consensus 122 ~~~~~l~~~~i~~~--------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~ 192 (220)
T PF02463_consen 122 DLEELLPEVGISPE--------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQF 192 (220)
T ss_dssp HHHHHHHCTTTTTT--------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEE
T ss_pred cccccccccccccc--------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 34455666655422 49999999999997664 478999999999999999999999999998654 678
Q ss_pred EEEeCChhHHhhhCCcEEEE
Q 020477 277 LMITHYRRLLEFIKPTFIHI 296 (325)
Q Consensus 277 IivtHd~~~~~~~~~d~i~v 296 (325)
|++||+..+.... |+.+.
T Consensus 193 ii~Th~~~~~~~a--~~~~~ 210 (220)
T PF02463_consen 193 IITTHNPEMFEDA--DKLIG 210 (220)
T ss_dssp EEE-S-HHHHTT---SEEEE
T ss_pred ccccccccccccc--ccccc
Confidence 9999998877763 55544
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.58 E-value=3.3e-15 Score=141.46 Aligned_cols=188 Identities=24% Similarity=0.359 Sum_probs=117.2
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCcc--CCCcchHHHHHHH
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVE--IPGVNNIDFLHMA 180 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~--~~~~~~~~~~~~~ 180 (325)
.+|++.+++|.||-||||-+++++|- .+|.-|.-. ++-+....-...+... +.-.|+.+.. +....-.+++...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk--~kpnlg~~~-~pp~w~~il~~frgse-lq~yftk~le~~lk~~~kpQyvd~i 173 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGK--QKPNLGRYD-NPPDWQEILTYFRGSE-LQNYFTKILEDNLKAIIKPQYVDQI 173 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCC--CCCCCCCCC-CCcchHHHhhhhhhHH-HhhhhhhhccccccCcCChHHHHHH
Confidence 57999999999999999999999995 566656321 1111000000000000 0000121110 0000001111111
Q ss_pred HHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHH
Q 020477 181 YNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260 (325)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~ 260 (325)
........+. ............++++.+.+. ..+++.+.. |||||-||.+||.+.+++.++.++|||.+-||...+.
T Consensus 174 pr~~k~~v~~-~l~~~~~r~~~~~~~~~~~L~-~~~~re~~~-lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRL 250 (592)
T KOG0063|consen 174 PRAVKGTVGS-LLDRKDERDNKEEVCDQLDLN-NLLDREVEQ-LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRL 250 (592)
T ss_pred HHHHHHHHHH-HHHHHhhcccHHHHHHHHHHh-hHHHhhhhh-cccchhhhhhhhhhhhhhcceeEecCCcccchHHHhh
Confidence 1100000000 000111112334456666664 567788765 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 261 DVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 261 ~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
.-...|+.+.....-||+|.||+..+... .|-+.++.
T Consensus 251 kaA~~IRsl~~p~~YiIVVEHDLsVLDyl-SDFiCcLY 287 (592)
T KOG0063|consen 251 KAAITIRSLINPDRYIIVVEHDLSVLDYL-SDFICCLY 287 (592)
T ss_pred hHHHHHHHhhCCCCeEEEEEeechHHHhh-hcceeEEe
Confidence 99999999987777899999999988876 58888876
No 424
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.58 E-value=1.5e-14 Score=128.78 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=44.0
Q ss_pred CChH--HHHHHHHHHHHHhCCCEEEEeCcC-----cCCCHHHHHHHHHHHHhccC
Q 020477 224 FSGG--ERKRNEILQLAVLGADLAILDEID-----SGLDVDALRDVAKAVNGLLT 271 (325)
Q Consensus 224 LSgG--qrQRv~iAraL~~~p~lLlLDEPt-----sgLD~~~~~~i~~~L~~l~~ 271 (325)
.||+ |++++.|||+++.+|+++++|||| ++||+..++.+.+.++++++
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 4444 999999999999999999999999 99999999999999999853
No 425
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.55 E-value=1.9e-14 Score=131.06 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=62.3
Q ss_pred CCCCChHH--------HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH-HHHHHHhccCCCcEEEEEeCChhHHhhhCC
Q 020477 221 NEGFSGGE--------RKRNEILQLAVLGADLAILDEIDSGLDVDALRD-VAKAVNGLLTPKNSLLMITHYRRLLEFIKP 291 (325)
Q Consensus 221 ~~~LSgGq--------rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tvIivtHd~~~~~~~~~ 291 (325)
++.+|||+ +||+++||++..+++|++| ||+.+|..+... ++ +.++...+.|.|++||++..... .
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~--~ 200 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRI--F 200 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCC--C
Confidence 44589999 9999999999999999999 999999644443 43 45554456799999997766554 5
Q ss_pred cEEEEEeCCEEEE
Q 020477 292 TFIHIMEDGRIIK 304 (325)
Q Consensus 292 d~i~vl~~G~iv~ 304 (325)
+.|.||+.|.+.+
T Consensus 201 paI~vl~s~sr~~ 213 (249)
T cd01128 201 PAIDILKSGTRKE 213 (249)
T ss_pred CeEEEcCCCCccc
Confidence 8999999999854
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=4.1e-14 Score=126.85 Aligned_cols=138 Identities=22% Similarity=0.224 Sum_probs=89.9
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
+.+.+|++|.+.+|++++|+||||+|||||++++++.. +.++.|...+... . .+.+..| ++..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~-~-----------~~~~~~~---i~~~- 80 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASS-A-----------TLSIFDS---VLTR- 80 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCc-e-----------EEeccce---EEEE-
Confidence 46899999999999999999999999999999999952 4567787655321 1 0111000 0000
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC--hHHHHHHHHHHHHHhCCCEEEEeC
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS--GGERKRNEILQLAVLGADLAILDE 249 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS--gGqrQRv~iAraL~~~p~lLlLDE 249 (325)
++-..+ .. .++| ..|.+|+.-+.--+.+++++||||
T Consensus 81 -------------------------------------~~~~d~-~~----~~~StF~~e~~~~~~il~~~~~~sLvllDE 118 (222)
T cd03287 81 -------------------------------------MGASDS-IQ----HGMSTFMVELSETSHILSNCTSRSLVILDE 118 (222)
T ss_pred -------------------------------------ecCccc-cc----cccchHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence 000000 00 0122 234444444444567899999999
Q ss_pred cCcCCCHHHHHHH-HHHHHhccCC-CcEEEEEeCChhHHhh
Q 020477 250 IDSGLDVDALRDV-AKAVNGLLTP-KNSLLMITHYRRLLEF 288 (325)
Q Consensus 250 PtsgLD~~~~~~i-~~~L~~l~~~-g~tvIivtHd~~~~~~ 288 (325)
|.+|.|+.....+ ..+++.+.+. +.++|++||+.++...
T Consensus 119 ~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 119 LGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred CCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 9888886666654 4566666654 7899999999987654
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.53 E-value=2.4e-14 Score=144.94 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=69.0
Q ss_pred CCChHHHHHHHHHHHHHhC----CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 223 GFSGGERKRNEILQLAVLG----ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~----p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
.|||||+||++||++++.. |++|||||||+|||+.+...+.+.|+++.+ +.+||+|||++..+. . ||++++|+
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~-~-ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAA-H-ADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHH-h-cCeEEEEE
Confidence 4899999999999999985 699999999999999999999999999874 789999999998885 4 79999998
Q ss_pred CCE
Q 020477 299 DGR 301 (325)
Q Consensus 299 ~G~ 301 (325)
+|.
T Consensus 517 k~~ 519 (563)
T TIGR00634 517 KEG 519 (563)
T ss_pred Ecc
Confidence 764
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.52 E-value=3.1e-14 Score=148.35 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH-HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK-AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
+||+||+|++.|++++ .+|+++|||||++|+|+.....+.. ++..+.+.|.++|++||+.++.... +++..++ ++.
T Consensus 390 tfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~-~~~~~v~-~~~ 466 (782)
T PRK00409 390 TFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALM-YNREGVE-NAS 466 (782)
T ss_pred HHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHH-hcCCCeE-EEE
Confidence 4999999999999988 8999999999999999999888865 5666666688999999998887765 4544333 444
Q ss_pred EEE
Q 020477 302 IIK 304 (325)
Q Consensus 302 iv~ 304 (325)
+..
T Consensus 467 ~~~ 469 (782)
T PRK00409 467 VEF 469 (782)
T ss_pred EEE
Confidence 443
No 429
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=5.5e-14 Score=151.69 Aligned_cols=83 Identities=23% Similarity=0.221 Sum_probs=74.6
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHh----------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020477 216 LNRNVNEGFSGGERKRNEILQLAVL----------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL 285 (325)
Q Consensus 216 ~~~~~~~~LSgGqrQRv~iAraL~~----------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~ 285 (325)
.++.+. .|||||++||+||+||+. +|++|||||||++||+.+...+++.|.++...|.+|+||||++++
T Consensus 944 ~~r~~~-~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 944 SVRPSA-TLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CcCCcc-cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 344555 599999999999999986 799999999999999999999999999997778899999999999
Q ss_pred HhhhCCcEEEEEeCC
Q 020477 286 LEFIKPTFIHIMEDG 300 (325)
Q Consensus 286 ~~~~~~d~i~vl~~G 300 (325)
...+ +++|.|++.|
T Consensus 1023 ~~~~-~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERI-PHRILVKKTN 1036 (1042)
T ss_pred HHhh-CCEEEEEECC
Confidence 9887 6999998754
No 430
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.49 E-value=4.5e-13 Score=130.96 Aligned_cols=176 Identities=17% Similarity=0.173 Sum_probs=110.3
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC--------HHHHhhccEEEec
Q 020477 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME--------PEERSLAGLFMSF 162 (325)
Q Consensus 91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~--------~~~~~~~~i~~~~ 162 (325)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+ ..++.|.|.+.|++-.... ...+ ...++++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~--~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l-~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARN--TSADLNVIALIGERGREVREFIERDLGPEGL-KRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcc--cCCCeEEEEEEecCCccHHHHHHhhcChhhh-cCeEEEEE
Confidence 35689999 99999999999999999999999999997 6789999999665433221 1111 12345554
Q ss_pred cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC-hHHHHHHHHHHHHHhC
Q 020477 163 QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS-GGERKRNEILQLAVLG 241 (325)
Q Consensus 163 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS-gGqrQRv~iAraL~~~ 241 (325)
+... ....-+...+.. -.+.|++..-|..-=+.-. +|+ --|.+| .|+
T Consensus 221 ~~~~-----~~~~r~~~~~~a----------------~~iAEyfr~~g~~Vll~~D----sltr~A~A~r-Eis------ 268 (438)
T PRK07721 221 TSDQ-----PALMRIKGAYTA----------------TAIAEYFRDQGLNVMLMMD----SVTRVAMAQR-EIG------ 268 (438)
T ss_pred CCCC-----CHHHHHHHHHHH----------------HHHHHHHHHCCCcEEEEEe----ChHHHHHHHH-HHH------
Confidence 3211 111111111100 0122223222321000001 121 122222 011
Q ss_pred CCEEEEeCc--CcCCCHHHHHHHHHHHHhccC--CCc-----EEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 242 ADLAILDEI--DSGLDVDALRDVAKAVNGLLT--PKN-----SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 242 p~lLlLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
+.+.|| |+|+|+.....+.+++.++.. +|. ||++.+||++. .+ ||++.++.+|+|+.+++.
T Consensus 269 ---l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i-~d~v~~i~dG~Ivls~~l 338 (438)
T PRK07721 269 ---LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PI-ADTVRGILDGHFVLDRQL 338 (438)
T ss_pred ---HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hh-hhhEEEecCEEEEEeccH
Confidence 234564 789999999999999999873 574 99999999883 45 699999999999998863
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.47 E-value=1.5e-13 Score=138.46 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 224 FSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
|||||+|||+||++++. +|+++|||||++|||..+...+.+.|+++.+ +.+||+|||++..+. + ||+.+++.+
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~~-~-ad~~~~v~k 507 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVAG-C-GHQHFFVSK 507 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-h-CCEEEEEec
Confidence 79999999999999997 5899999999999999999999999999964 589999999998774 4 688888876
Q ss_pred C
Q 020477 300 G 300 (325)
Q Consensus 300 G 300 (325)
+
T Consensus 508 ~ 508 (553)
T PRK10869 508 E 508 (553)
T ss_pred c
Confidence 4
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.47 E-value=8.4e-14 Score=140.97 Aligned_cols=76 Identities=26% Similarity=0.388 Sum_probs=66.4
Q ss_pred CCChHHHHHHHHHHHHH----------hCCCEEEEeCcC-cCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCC
Q 020477 223 GFSGGERKRNEILQLAV----------LGADLAILDEID-SGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKP 291 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~----------~~p~lLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~ 291 (325)
.|||||+||++||+||+ .+|++||||||| ++||+.+...+.+.|.++ .+.|||+|||+...... +
T Consensus 468 ~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~~--~ 543 (562)
T PHA02562 468 SFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQK--F 543 (562)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchhh--h
Confidence 59999999999999987 599999999998 789999999999999998 47899999999776653 5
Q ss_pred cEEEEEeC-CEE
Q 020477 292 TFIHIMED-GRI 302 (325)
Q Consensus 292 d~i~vl~~-G~i 302 (325)
|++++|.+ |+.
T Consensus 544 d~~~~l~~~~~~ 555 (562)
T PHA02562 544 DRHLKMEKVGRF 555 (562)
T ss_pred hcEEEEEEECCe
Confidence 88888875 554
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.45 E-value=6.5e-13 Score=119.86 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHHHh----CCCEEEEeCcCcCC----CHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020477 224 FSGGERKRNEILQLAVL----GADLAILDEIDSGL----DVDALRDVAKAVNGLLTPKNSLLMITHYRR 284 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgL----D~~~~~~i~~~L~~l~~~g~tvIivtHd~~ 284 (325)
+|+++.++-.+++.+-. +|+++++||||+++ |+...+.+.+.++.+++.|.|++ +||+..
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi-~t~~~~ 163 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVII-LTANPK 163 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEE-EEeccc
Confidence 67777666666655543 69999999999999 88888899999998877777655 566544
No 434
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=5.6e-13 Score=119.15 Aligned_cols=139 Identities=22% Similarity=0.219 Sum_probs=88.8
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
+.+-+|++|++++|++++|+||||+|||||++++++.. +-...|- .+ + .... .+.+. ..++..
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~-~la~~G~------~v---p-a~~~--~i~~~---~~i~~~- 79 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV-IMAQMGM------DV---P-AKSM--RLSLV---DRIFTR- 79 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH-HHHHcCC------cc---C-cccc--Eeccc---cEEEEe-
Confidence 56889999999999999999999999999999998851 1111121 00 0 0000 01100 000000
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCCh--HHHHHHHHHHHHHhCCCEEEEeC
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG--GERKRNEILQLAVLGADLAILDE 249 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg--GqrQRv~iAraL~~~p~lLlLDE 249 (325)
++-..+ .. .++|. .|.+++.-....+.+|+++||||
T Consensus 80 -------------------------------------~~~~d~-~~----~~~StF~~e~~~~~~il~~~~~~sLvLlDE 117 (218)
T cd03286 80 -------------------------------------IGARDD-IM----KGESTFMVELSETANILRHATPDSLVILDE 117 (218)
T ss_pred -------------------------------------cCcccc-cc----cCcchHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 000000 00 01221 34455544444457899999999
Q ss_pred cCcCCCHHHHHHHHHH-HHhccCC-CcEEEEEeCChhHHhhh
Q 020477 250 IDSGLDVDALRDVAKA-VNGLLTP-KNSLLMITHYRRLLEFI 289 (325)
Q Consensus 250 PtsgLD~~~~~~i~~~-L~~l~~~-g~tvIivtHd~~~~~~~ 289 (325)
|++|+|+.....+... ++.+.+. +.++|++||+++++...
T Consensus 118 ~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 118 LGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 9999999998888887 6666654 78999999999987765
No 435
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.43 E-value=2e-13 Score=107.93 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=58.7
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
+.+|++++|++++|++++|+||||||||||++++. +|++.++|.++..++.....+ .+++++|+ +|. .
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~-~~~~~~q~--lf~-~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDE-LIGRNPEL--GLE-I 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCC-EEEEechh--cch-h
Confidence 46899999999999999999999999999999975 589999999987766544433 35566666 222 3
Q ss_pred chHHHHHH
Q 020477 172 NNIDFLHM 179 (325)
Q Consensus 172 ~~~~~~~~ 179 (325)
+..+|+..
T Consensus 70 ti~~Ni~~ 77 (107)
T cd00820 70 RLRLNIFL 77 (107)
T ss_pred hHHhhcee
Confidence 55555543
No 436
>PRK13695 putative NTPase; Provisional
Probab=99.41 E-value=5.6e-13 Score=114.96 Aligned_cols=78 Identities=23% Similarity=0.213 Sum_probs=60.2
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeC--cCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILDE--IDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLDE--PtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
.+||+++-++.+++..+.+|+++|+|| |+.++|.... +.+.++.+.+.++|+++|+.. +... +|+|..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~----~~l~~~~~~~~~~i~v~h~~~-~~~~-~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFV----KAVEEVLDSEKPVIATLHRRS-VHPF-VQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHH----HHHHHHHhCCCeEEEEECchh-hHHH-HHHHhccCCc
Confidence 399999999999999999999999999 5555555444 444444445789999999853 3344 5889999999
Q ss_pred EEEEEc
Q 020477 301 RIIKTG 306 (325)
Q Consensus 301 ~iv~~g 306 (325)
+|++.-
T Consensus 152 ~i~~~~ 157 (174)
T PRK13695 152 RVYELT 157 (174)
T ss_pred EEEEEc
Confidence 997664
No 437
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.39 E-value=1e-12 Score=141.63 Aligned_cols=80 Identities=26% Similarity=0.304 Sum_probs=72.1
Q ss_pred ccCCCCCChHHHHHHHHHHHHHh--------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhh
Q 020477 218 RNVNEGFSGGERKRNEILQLAVL--------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI 289 (325)
Q Consensus 218 ~~~~~~LSgGqrQRv~iAraL~~--------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~ 289 (325)
+.+. +|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.+.|+||+||||..++...+
T Consensus 945 r~~~-~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 945 RDTR-TLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCcc-cCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 5555 599999999999999996 8999999999999999999999999999987799999999998888887
Q ss_pred CCcEEEEEeC
Q 020477 290 KPTFIHIMED 299 (325)
Q Consensus 290 ~~d~i~vl~~ 299 (325)
..+|.|-..
T Consensus 1024 -~~qi~V~k~ 1032 (1047)
T PRK10246 1024 -PVQIKVKKI 1032 (1047)
T ss_pred -cceEEEEEC
Confidence 578877654
No 438
>PRK03918 chromosome segregation protein; Provisional
Probab=99.39 E-value=8.4e-13 Score=140.36 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=65.0
Q ss_pred CCChHHHH------HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEE
Q 020477 223 GFSGGERK------RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI 296 (325)
Q Consensus 223 ~LSgGqrQ------Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~v 296 (325)
.|||||+| |++||++++.+|+++||||||++||+..+..+.++|..+...+.+||+||||.++. .. ||++++
T Consensus 788 ~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~-~d~~~~ 865 (880)
T PRK03918 788 FLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DA-ADYVIR 865 (880)
T ss_pred hCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-Hh-CCeEEE
Confidence 59999999 55566678899999999999999999999999999999876677999999998865 44 699999
Q ss_pred Ee
Q 020477 297 ME 298 (325)
Q Consensus 297 l~ 298 (325)
|+
T Consensus 866 l~ 867 (880)
T PRK03918 866 VS 867 (880)
T ss_pred EE
Confidence 87
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.38 E-value=1.5e-12 Score=115.90 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020477 223 GFSGGERKRNEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL 286 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~ 286 (325)
.+|.|++|.+.|+.++...+ .++++|||-++|+|..++.+++.|.+..+.+.-||++||.+.++
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 37999999999998888766 89999999999999999999999988866567899999988654
No 440
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.38 E-value=5.3e-12 Score=122.75 Aligned_cols=169 Identities=21% Similarity=0.211 Sum_probs=118.1
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
+.++-+.++..|.. +..+++.+ |.+.+|+.++|+|+||+|||||+++|+|. .+++.|.|.+.|+.-.
T Consensus 129 ~~~~r~~i~~~l~T-GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~--~~~~~gvI~~iGerg~--------- 195 (432)
T PRK06793 129 HAFEREEITDVFET-GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKN--AKADINVISLVGERGR--------- 195 (432)
T ss_pred CchheechhhccCC-CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhcc--CCCCeEEEEeCCCCcc---------
Confidence 35777888888864 45688885 99999999999999999999999999997 5678887776665321
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
++.+++.... ..-++.....-.... +.|.|+|+|++.+
T Consensus 196 ----------------ev~e~~~~~l-------------------------~~~gl~~tvvv~~ts-d~s~~~r~ra~~~ 233 (432)
T PRK06793 196 ----------------EVKDFIRKEL-------------------------GEEGMRKSVVVVATS-DESHLMQLRAAKL 233 (432)
T ss_pred ----------------cHHHHHHHHh-------------------------hhcccceeEEEEECC-CCCHHHHHHHHHH
Confidence 2222221110 000111000111122 4799999999999
Q ss_pred HHHH-------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 236 QLAV-------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 236 raL~-------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
.+.+ .++-+|++|+||...|+. +++...+.+.-..|.+..+.||-.++.++. -...+|.|....
T Consensus 234 a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERa-----g~~~~GSiT~~~ 304 (432)
T PRK06793 234 ATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERS-----GKTQKGSITGIY 304 (432)
T ss_pred HHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHh-----ccCCCcceEEEE
Confidence 8887 789999999999999986 666667777654577888888866666553 224678876543
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.38 E-value=3.9e-12 Score=110.24 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=64.3
Q ss_pred ccccCCCCCChHHHH------HHHHHHHHHhCCCEEEEeCcCcCCC---HHHHHHHHHHHHhccCCCcEEEEEeCChhH-
Q 020477 216 LNRNVNEGFSGGERK------RNEILQLAVLGADLAILDEIDSGLD---VDALRDVAKAVNGLLTPKNSLLMITHYRRL- 285 (325)
Q Consensus 216 ~~~~~~~~LSgGqrQ------Rv~iAraL~~~p~lLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvIivtHd~~~- 285 (325)
.+..+. .+|+|++| +...+.+...+|+++++|||++.+| ...+..+.++++.+++.|.|+|+++|+...
T Consensus 65 ~d~~~~-~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~ 143 (187)
T cd01124 65 VDADPD-EIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLE 143 (187)
T ss_pred EecCcc-ccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 344444 48999998 5555555677999999999999999 888888889998887778999999998764
Q ss_pred --------HhhhCCcEEEEEe
Q 020477 286 --------LEFIKPTFIHIME 298 (325)
Q Consensus 286 --------~~~~~~d~i~vl~ 298 (325)
+..+ +|.++.|+
T Consensus 144 ~~~~~~~~~~~~-aD~ii~l~ 163 (187)
T cd01124 144 GTGFGGGDVEYL-VDGVIRLR 163 (187)
T ss_pred CcccCcCceeEe-eeEEEEEE
Confidence 4444 68888776
No 442
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=106.21 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
.|.||-=--.+.+.+- +--++|||||-++|.+.-+-.++..|+++.+.|.-+||+||.+=++..- --.|+-++.+.+-
T Consensus 130 ~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP-~A~I~~~~~~g~~ 207 (233)
T COG3910 130 MSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIP-GAEIYEISESGIE 207 (233)
T ss_pred hccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCC-CcEEEEEecCCcc
Confidence 7999987766666654 6689999999999999999999999999998899999999987666544 3567777776553
No 443
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=1.9e-12 Score=142.53 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=67.0
Q ss_pred cCCCCCChHHHH------HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-----CCCcEEEEEeCChhHHh
Q 020477 219 NVNEGFSGGERK------RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-----TPKNSLLMITHYRRLLE 287 (325)
Q Consensus 219 ~~~~~LSgGqrQ------Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-----~~g~tvIivtHd~~~~~ 287 (325)
..+ .||||||| |++||||++.+|++|||||||+|||+.+...+.+.|..+. ..|.+||+||||++++.
T Consensus 1196 ~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1196 MRG-RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 344 49999999 9999999999999999999999999999999999998873 23779999999999998
Q ss_pred hhC----CcEEEEE
Q 020477 288 FIK----PTFIHIM 297 (325)
Q Consensus 288 ~~~----~d~i~vl 297 (325)
.++ +++++-+
T Consensus 1275 ~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1275 LLGRSEYVEKFYRL 1288 (1311)
T ss_pred HHhhccccceeeee
Confidence 775 4555544
No 444
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.34 E-value=5.1e-12 Score=127.99 Aligned_cols=103 Identities=21% Similarity=0.280 Sum_probs=88.8
Q ss_pred HHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhC--CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020477 205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG--ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY 282 (325)
Q Consensus 205 ~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~--p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd 282 (325)
.|..+|+++=.++|..+. |||||.||+-||.-+=+. -=+++||||+.||-+.--+++++.|+++++.|.|+|+|.||
T Consensus 464 fL~~VGL~YLtL~R~a~T-LSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHD 542 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGT-LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHD 542 (935)
T ss_pred HHHHcCcCcccccccCCC-cChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecC
Confidence 355678876667888775 999999999999999765 45789999999999999999999999999889999999999
Q ss_pred hhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 283 RRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 283 ~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
.+.+.. ||+|+=| +.|+|++.|+++.
T Consensus 543 edti~~--AD~iIDiGPgAG~~GGeIv~~Gtp~~ 574 (935)
T COG0178 543 EDTIRA--ADHIIDIGPGAGEHGGEIVAEGTPEE 574 (935)
T ss_pred HHHHhh--cCEEEeeCCCCCcCCCEEEEccCHHH
Confidence 887765 6998765 5789999999864
No 445
>PRK01156 chromosome segregation protein; Provisional
Probab=99.33 E-value=7.1e-12 Score=133.63 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=63.9
Q ss_pred CCChHHHHHHHH------HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CC-C-cEEEEEeCChhHHhhhCCcE
Q 020477 223 GFSGGERKRNEI------LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TP-K-NSLLMITHYRRLLEFIKPTF 293 (325)
Q Consensus 223 ~LSgGqrQRv~i------AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tvIivtHd~~~~~~~~~d~ 293 (325)
.|||||++|++| |++|+.+|++++|||||++||+.....+.++|.... .. + .+||+||||.+++. . ||+
T Consensus 801 ~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~-~-~d~ 878 (895)
T PRK01156 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLS-V-ADV 878 (895)
T ss_pred cCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHH-h-cCe
Confidence 599999999975 589999999999999999999999999999998643 33 3 48999999999875 4 689
Q ss_pred EEEEe
Q 020477 294 IHIME 298 (325)
Q Consensus 294 i~vl~ 298 (325)
++.+.
T Consensus 879 ii~~~ 883 (895)
T PRK01156 879 AYEVK 883 (895)
T ss_pred EEEEE
Confidence 98886
No 446
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.30 E-value=4.6e-11 Score=125.79 Aligned_cols=69 Identities=16% Similarity=0.019 Sum_probs=59.4
Q ss_pred HhCCCEEEEeCcCcCC-CHHHHHHHHHHHHhccCCCcEEEEEeCChhHHh---------hhCCcEEEEEeCCEEEEEcCc
Q 020477 239 VLGADLAILDEIDSGL-DVDALRDVAKAVNGLLTPKNSLLMITHYRRLLE---------FIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 239 ~~~p~lLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~---------~~~~d~i~vl~~G~iv~~g~~ 308 (325)
..+|+++++|||+.+| |+...+.+.+.++++++.|.++|++||+++.+. .. |++.++|.+|++...+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~-~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKES-CPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhc-CCeEEECCCccccccchH
Confidence 4799999999999999 799999999999999888889999999998875 33 688888999998665543
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.27 E-value=4.6e-12 Score=119.16 Aligned_cols=141 Identities=16% Similarity=0.129 Sum_probs=90.4
Q ss_pred eEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHH
Q 020477 98 VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFL 177 (325)
Q Consensus 98 vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~ 177 (325)
+++.++.|+.++|+|++|||||||+++|+++ +++..|.+.+.. ...+..... ..+.+..+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~--~~~~~~iv~ied--~~El~~~~~--~~~~l~~~~------------- 197 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDE--IPKDERIITIED--TREIFLPHP--NYVHLFYSK------------- 197 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHcc--CCccccEEEEcC--ccccCCCCC--CEEEEEecC-------------
Confidence 4567889999999999999999999999997 567777777642 111110000 001100000
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHH
Q 020477 178 HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257 (325)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~ 257 (325)
. ... . ...+- .-.++.+|-.+|+++++|||.+
T Consensus 198 ------------------------------------~-~~~-~-~~~~~----~~~l~~~Lr~~pd~ii~gE~r~----- 229 (308)
T TIGR02788 198 ------------------------------------G-GQG-L-AKVTP----KDLLQSCLRMRPDRIILGELRG----- 229 (308)
T ss_pred ------------------------------------C-CCC-c-CccCH----HHHHHHHhcCCCCeEEEeccCC-----
Confidence 0 000 0 01222 2246677889999999999996
Q ss_pred HHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 258 ~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
.+++++++.+.....+++.++|..+.... .+|+..|..|++...|.+.
T Consensus 230 --~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~--~~Rl~~l~~~~~~~~g~~~ 277 (308)
T TIGR02788 230 --DEAFDFIRAVNTGHPGSITTLHAGSPEEA--FEQLALMVKSSQAGLGLDF 277 (308)
T ss_pred --HHHHHHHHHHhcCCCeEEEEEeCCCHHHH--HHHHHHHhhccccccCCCH
Confidence 34556666665333467999999885544 4888888888888777654
No 448
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.26 E-value=3.8e-12 Score=123.89 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=54.1
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccEEEeccCC
Q 020477 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGLFMSFQSP 165 (325)
Q Consensus 93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~ 165 (325)
.+|++|||++++||+++|+|||||||||||+ +|+ ..|++| +|.++|+++...+........ +|||+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l--~~~~sGg~I~ldg~~~~~~~~~ai~~LR--~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENK--RKFSEGYEFFLDATHSFSPNKNAMETLD--EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCC--CCCCCCCEEEECCEECCCCCHHHHHHHH--HHHHhh
Confidence 5899999999999999999999999999999 665 456777 899999999876654433222 566654
No 449
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.24 E-value=1.3e-11 Score=134.23 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=64.8
Q ss_pred ccCCCCCChHHHHHHHHHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020477 218 RNVNEGFSGGERKRNEILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF 293 (325)
Q Consensus 218 ~~~~~~LSgGqrQRv~iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~ 293 (325)
..+. .|||||+||++||++++ ..|+++||||||++||+.+...+.++|..+.+. .+||||||++.++. . ||+
T Consensus 1085 ~~~~-~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-~~~i~~sh~~~~~~-~-~d~ 1160 (1179)
T TIGR02168 1085 QNLS-LLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-TQFIVITHNKGTME-V-ADQ 1160 (1179)
T ss_pred cccc-ccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-CEEEEEEcChhHHH-H-hhh
Confidence 3444 59999999999999985 577999999999999999999999999998654 68999999999775 4 688
Q ss_pred EEEE
Q 020477 294 IHIM 297 (325)
Q Consensus 294 i~vl 297 (325)
++.+
T Consensus 1161 ~~~~ 1164 (1179)
T TIGR02168 1161 LYGV 1164 (1179)
T ss_pred Heee
Confidence 7644
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.22 E-value=9.1e-11 Score=98.33 Aligned_cols=63 Identities=11% Similarity=-0.017 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcC----------CCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSG----------LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL 286 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsg----------LD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~ 286 (325)
.+.++.++++.+++...+|+++++||+++- .|....+.+.+++....+.+.|+|+++|.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 456667788889999999999999999954 444556666666666655688999999976543
No 451
>PRK02224 chromosome segregation protein; Provisional
Probab=99.14 E-value=9e-11 Score=124.99 Aligned_cols=76 Identities=25% Similarity=0.316 Sum_probs=65.5
Q ss_pred CCChHHHH------HHHHHHHHHhC-----C-CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCc-EEEEEeCChhHHhhh
Q 020477 223 GFSGGERK------RNEILQLAVLG-----A-DLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFI 289 (325)
Q Consensus 223 ~LSgGqrQ------Rv~iAraL~~~-----p-~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvIivtHd~~~~~~~ 289 (325)
.||||||+ |++||++++.+ | +++||||||++||+..+..+.++|..+...|. +||+||||.+++. .
T Consensus 781 ~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~-~ 859 (880)
T PRK02224 781 QLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG-A 859 (880)
T ss_pred hcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH-h
Confidence 59999999 99999999864 3 67999999999999999999999999875554 8999999999885 4
Q ss_pred CCcEEEEEeCC
Q 020477 290 KPTFIHIMEDG 300 (325)
Q Consensus 290 ~~d~i~vl~~G 300 (325)
+|+++++.+.
T Consensus 860 -ad~~~~~~~~ 869 (880)
T PRK02224 860 -ADDLVRVEKD 869 (880)
T ss_pred -cCeeEEeecC
Confidence 6899888643
No 452
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.13 E-value=1.2e-10 Score=126.89 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 223 GFSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
.||||||++++||++|+. .|+++|||||+++||+..+..+.++|.++.. +.++|+|||+...+. . ||+++.+.
T Consensus 1074 ~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~-~-~d~~~~~~ 1150 (1164)
T TIGR02169 1074 AMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIE-Y-ADRAIGVT 1150 (1164)
T ss_pred hcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHH-h-cceeEeEE
Confidence 599999999999999985 6899999999999999999999999999865 468999999987664 4 68887664
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.03 E-value=1.1e-09 Score=98.75 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHHHh--CCCEEEEeCcCcC---CCHHHHHHHHHHHHhccCCCcEEEEEeCChhH-------HhhhCC
Q 020477 224 FSGGERKRNEILQLAVL--GADLAILDEIDSG---LDVDALRDVAKAVNGLLTPKNSLLMITHYRRL-------LEFIKP 291 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~--~p~lLlLDEPtsg---LD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~-------~~~~~~ 291 (325)
.|.++.+.+..++.++. +|+++++||||+. +|......+++.++.+++.+.|+++++|+... +..+ +
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l-~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI-C 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh-e
Confidence 57789999999999987 9999999999965 44555556656676666678899999997654 3333 5
Q ss_pred cEEEEEe
Q 020477 292 TFIHIME 298 (325)
Q Consensus 292 d~i~vl~ 298 (325)
|-++.|+
T Consensus 180 DgvI~L~ 186 (234)
T PRK06067 180 DVYLKLR 186 (234)
T ss_pred EEEEEEE
Confidence 6666665
No 454
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=8.9e-10 Score=105.96 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=56.5
Q ss_pred CCChHHHHHHHHHHHHHh---------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020477 223 GFSGGERKRNEILQLAVL---------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLE 287 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~---------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~ 287 (325)
.+|.||+|+++||.+|+. +|+|||||||+++||+..++.+++.|.+. |.+|+++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 489999999999999999 99999999999999999999999999764 568999999987654
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.96 E-value=2.6e-09 Score=96.82 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=39.4
Q ss_pred HHHhCCCEEEEeCcCcC------CCHHHHHHHHHHHHhccCC-CcEEEEEeCChh
Q 020477 237 LAVLGADLAILDEIDSG------LDVDALRDVAKAVNGLLTP-KNSLLMITHYRR 284 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsg------LD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~ 284 (325)
+...+|+++|+| |+++ +|+.....+++.|.+++++ |.|||+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 345799999999 7764 7999999999999998754 889999999753
No 456
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.94 E-value=1.8e-08 Score=98.80 Aligned_cols=177 Identities=16% Similarity=0.148 Sum_probs=105.3
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH---Hh---hccEEEeccC
Q 020477 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE---RS---LAGLFMSFQS 164 (325)
Q Consensus 91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~---~~---~~~i~~~~Q~ 164 (325)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|. ..++.|.+...|+.-.....-. .. .....++...
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~--~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARN--TEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCC--CCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35789999 99999999999999999999999999997 5677787777665433221100 00 0011111111
Q ss_pred CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC-hHHHHHHHHHHHHHhCCC
Q 020477 165 PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS-GGERKRNEILQLAVLGAD 243 (325)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS-gGqrQRv~iAraL~~~p~ 243 (325)
... ....-... .. ..-.+.+.+...|..--++- .+|+ --|.+| .|+
T Consensus 227 ~d~----~p~~r~~~---------------~~-~a~t~AE~frd~G~~Vll~~----DslTr~A~A~R-Eis-------- 273 (440)
T TIGR01026 227 SDQ----SPLLRLKG---------------AY-VATAIAEYFRDQGKDVLLLM----DSVTRFAMAQR-EIG-------- 273 (440)
T ss_pred CCC----CHHHHHHH---------------HH-HHHHHHHHHHHCCCCEEEEE----eChHHHHHHHH-HHH--------
Confidence 100 00000000 00 11123333433343210110 1122 123333 222
Q ss_pred EEEEeCc--CcCCCHHHHHHHHHHHHhccCCCc-------EEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 244 LAILDEI--DSGLDVDALRDVAKAVNGLLTPKN-------SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 244 lLlLDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
+.+.|| +.|+|+.....+.+++.+....+. ||++.+||+. ..+ +|.+..+.+|+|+.+..
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi-~d~~~~i~dG~ivLsr~ 342 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPI-ADSVRGILDGHIVLSRA 342 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cch-hhhhccccceEEEEecc
Confidence 456775 569999999999999999876566 8888999873 444 68888899999998774
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.93 E-value=5.7e-08 Score=78.21 Aligned_cols=59 Identities=25% Similarity=0.144 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH------HHHhccCCCcEEEEEeCC
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK------AVNGLLTPKNSLLMITHY 282 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~------~L~~l~~~g~tvIivtHd 282 (325)
..+++..+..+++|-..+|.++++||+..-.+......... ........+..+|+++|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 68888999999999888899999999999999988876654 122223346688888883
No 458
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.92 E-value=5.9e-08 Score=102.88 Aligned_cols=55 Identities=18% Similarity=-0.025 Sum_probs=49.8
Q ss_pred HHHHHHhCCCEEEEeCcCcCC-CHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020477 234 ILQLAVLGADLAILDEIDSGL-DVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF 288 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~ 288 (325)
|++++..+|+++++|||+.+| |+..++.+.+.++.+++.|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 577888999999999999999 7999999999999998788899999999987764
No 459
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.89 E-value=4.2e-09 Score=102.84 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=68.9
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC---EeCCCCCH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG---ENLLEMEP 150 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g---~~i~~~~~ 150 (325)
..+.++.++++..|.. +..+++.++ .|.+|++++|+|+||+|||||+++|+++ ..|+.|.|.+.| +++..+..
T Consensus 136 ~p~~~~r~~v~~~l~T-Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l--~~pd~gvv~liGergrev~e~~~ 211 (450)
T PRK06002 136 APPAMTRARVETGLRT-GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARA--DAFDTVVIALVGERGREVREFLE 211 (450)
T ss_pred CCCCeEeecceEEcCC-CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCC--CCCCeeeeeecccCCccHHHHhH
Confidence 4557999999999974 467899996 9999999999999999999999999997 568899888864 55543333
Q ss_pred HHH---hhccEEEeccCC
Q 020477 151 EER---SLAGLFMSFQSP 165 (325)
Q Consensus 151 ~~~---~~~~i~~~~Q~~ 165 (325)
..+ +...+++++|..
T Consensus 212 ~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 212 DTLADNLKKAVAVVATSD 229 (450)
T ss_pred HHHHHhhCCeEEEEEcCC
Confidence 221 224578888865
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.88 E-value=5.1e-09 Score=92.32 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
+|+++|..+|+++++|||. |.+....+++. +..|..++.++|..+.... .+|++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~----a~~G~~v~~t~Ha~~~~~~--~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTA----AETGHLVMSTLHTNSAAKT--IDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHH----HHcCCEEEEEecCCcHHHH--HhHHHhh
Confidence 5889999999999999996 66655444433 3457889999998765543 2555443
No 461
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.88 E-value=6.5e-09 Score=111.10 Aligned_cols=75 Identities=25% Similarity=0.297 Sum_probs=63.5
Q ss_pred CCCChHHHHHHHHHHHHH------hC--CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020477 222 EGFSGGERKRNEILQLAV------LG--ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF 293 (325)
Q Consensus 222 ~~LSgGqrQRv~iAraL~------~~--p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~ 293 (325)
.+|||||+=.++||-+|+ .+ -++|+|||||..||+++.+.+++.|..+...+.+|+|||||.++...+ |+
T Consensus 814 ~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~--~~ 891 (908)
T COG0419 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERA--DV 891 (908)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhC--Ce
Confidence 359999998887776663 45 699999999999999999999999999987788999999998887764 55
Q ss_pred EEEEe
Q 020477 294 IHIME 298 (325)
Q Consensus 294 i~vl~ 298 (325)
++.++
T Consensus 892 ~i~V~ 896 (908)
T COG0419 892 RIRVK 896 (908)
T ss_pred EEEEE
Confidence 65554
No 462
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.84 E-value=3e-10 Score=113.25 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=89.8
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHH--hCCCCCCCCccEEEECCEeCCCCCHHH--HhhccEEEeccCCccCCCcchHHH
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVL--VGHPDYEVTEGSVVFKGENLLEMEPEE--RSLAGLFMSFQSPVEIPGVNNIDF 176 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l--~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~~~~i~~~~Q~~~~~~~~~~~~~ 176 (325)
-+.+|..+.|.|++|||||||..-+ .|. ....+.-+++..+. ++.. +....++|.+++...-..+...+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~--~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~~g~l~~~~- 89 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGI--IHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVDEGKLFILD- 89 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhhcCceEEEe-
Confidence 4789999999999999999999765 453 11123345554331 1222 11122333332211000000000
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH--HHHHhCCCEEEEeCcCcCC
Q 020477 177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL--QLAVLGADLAILDEIDSGL 254 (325)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA--raL~~~p~lLlLDEPtsgL 254 (325)
..... .....++.+++. +..++... .+|+|++|||.|+ .+|...|+.+
T Consensus 90 ----------------~~~~~---~~~~~~~~~~l~-~~l~~i~~-~ls~g~~qRVvIDSl~aL~~~~~~~--------- 139 (484)
T TIGR02655 90 ----------------ASPDP---EGQDVVGGFDLS-ALIERINY-AIRKYKAKRVSIDSVTAVFQQYDAV--------- 139 (484)
T ss_pred ----------------cCchh---ccccccccCCHH-HHHHHHHH-HHHHhCCcEEEEeehhHhhhhcCch---------
Confidence 00000 000012223332 23333333 4999999999999 5665655544
Q ss_pred CHHHHHHHHHHHHhccCCCcEEEEEeCChhH--------H-hhhCCcEEEEEe
Q 020477 255 DVDALRDVAKAVNGLLTPKNSLLMITHYRRL--------L-EFIKPTFIHIME 298 (325)
Q Consensus 255 D~~~~~~i~~~L~~l~~~g~tvIivtHd~~~--------~-~~~~~d~i~vl~ 298 (325)
...++.+.++++.+++.|.|+|+++|+.+. + +.+ +|.|+.|+
T Consensus 140 -~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~l-aDgVI~L~ 190 (484)
T TIGR02655 140 -SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFV-SDNVVILR 190 (484)
T ss_pred -HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEe-eeeEEEEE
Confidence 467888999998888789999999998764 1 333 68888776
No 463
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.82 E-value=2.9e-08 Score=105.03 Aligned_cols=63 Identities=27% Similarity=0.176 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHHHh--CCCEEEEeCc---CcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHh
Q 020477 223 GFSGGERKRNEILQLAVL--GADLAILDEI---DSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLE 287 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~--~p~lLlLDEP---tsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~ 287 (325)
++|.=+.....++.+|-. ++.++|+||| |+.+|..+ ....++..+.+. +.++|++||+.++..
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~el~~ 734 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHELTE 734 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechHHHHH
Confidence 478888888888888866 8999999999 99999444 445555555544 578999999966554
No 464
>PRK14079 recF recombination protein F; Provisional
Probab=98.80 E-value=1.3e-08 Score=97.33 Aligned_cols=77 Identities=14% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020477 223 GFSGGERKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF 293 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~ 293 (325)
.+|+||++++++|+.|+ .+|+++|||||+++||...+..+.+.|.... .++|-.|+ .... +++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~----~~~~-~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTE----APPG-AAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCC----CCCC-Cce
Confidence 48999999999999999 8999999999999999999999999986542 23333333 2333 588
Q ss_pred EEEEeCCEEEEEcC
Q 020477 294 IHIMEDGRIIKTGD 307 (325)
Q Consensus 294 i~vl~~G~iv~~g~ 307 (325)
++.+.+|++.-+.+
T Consensus 335 ~~~~~~~~~~~~~~ 348 (349)
T PRK14079 335 TLRIEAGVFTPEAP 348 (349)
T ss_pred EEEEeccEecCCCC
Confidence 99999998764443
No 465
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.76 E-value=1.4e-08 Score=112.18 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=53.8
Q ss_pred cccCCCCCChHHHHHHH----HHHH--------HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 020477 217 NRNVNEGFSGGERKRNE----ILQL--------AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYR 283 (325)
Q Consensus 217 ~~~~~~~LSgGqrQRv~----iAra--------L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~ 283 (325)
++..+ .||||||||++ +|++ +..+|+++||||||+|||+.+...++++|.++ +.++||+||++
T Consensus 1242 ~~~~~-~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1242 THRFG-PASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred hcccc-CCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 33444 59999999996 5755 44799999999999999999999999999988 67899999965
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.75 E-value=1.9e-08 Score=87.77 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=41.6
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020477 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN 144 (325)
Q Consensus 94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~ 144 (325)
..+=+.+.+++|+.++|+||||||||||+++|+|+ .+|+.|.|.+.+..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~--i~~~~~~i~ied~~ 62 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAF--IPPDERIITIEDTA 62 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh--cCCCCCEEEECCcc
Confidence 34445667899999999999999999999999998 56889999997643
No 467
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.71 E-value=9e-07 Score=93.60 Aligned_cols=50 Identities=12% Similarity=-0.025 Sum_probs=44.5
Q ss_pred HHhCCCEEEEeCcCcCCC-HHHHHHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020477 238 AVLGADLAILDEIDSGLD-VDALRDVAKAVNGLLTPKNSLLMITHYRRLLE 287 (325)
Q Consensus 238 L~~~p~lLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~ 287 (325)
+..+|.++++|||...|| +...+.+.+.++.+++.|..++++||+++.+.
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 689 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDAS 689 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 456899999999999999 88899999999999887889999999987654
No 468
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.70 E-value=7e-08 Score=95.40 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=31.4
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++++.++.+.+|++++++||||+||||++..|++.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHH
Confidence 45667777889999999999999999999999995
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.69 E-value=1.5e-08 Score=91.01 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=29.3
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHh--CCCCCCCCccEEEECC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLV--GHPDYEVTEGSVVFKG 142 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~--Gl~~~~p~~G~I~~~g 142 (325)
-+++|++++|.|++|+|||||...++ ++ .+..+-+++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEc
Confidence 58899999999999999999998654 43 23334456654
No 470
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.68 E-value=8.8e-08 Score=104.89 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=36.8
Q ss_pred eEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE
Q 020477 98 VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE 143 (325)
Q Consensus 98 vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~ 143 (325)
+++..+.+++++|+|++|+|||||++.+.+.. ....+|.+.+++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l-~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRL-SRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHH-hhcCCeEEEeecc
Confidence 56778899999999999999999999997642 2345788888753
No 471
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.67 E-value=1.6e-08 Score=88.93 Aligned_cols=111 Identities=23% Similarity=0.283 Sum_probs=61.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC--CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHH
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM--EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR 184 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~--~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~ 184 (325)
++||+|+||||||||.++|.++ + ..|.+.+.+.+-... ....... .....++.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~--l--~~~~~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~------------------- 56 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ--L--GNPKVVIISQDSYYKDLSHEELEE-RKNNNYDHP------------------- 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--h--CCCCeEEEEecccccccccccHHH-hccCCCCCC-------------------
Confidence 5899999999999999999997 3 234444443331110 0000000 000001111
Q ss_pred hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020477 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256 (325)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~ 256 (325)
.. ...+.+.+.+..+... +....+.. .+|.|++++..+ .+..++++|+|+|+.+.++
T Consensus 57 -------~~---~~~~~~~~~l~~l~~~-~~~~~p~~-d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 57 -------DA---FDFDLLISHLQDLKNG-KSVEIPVY-DFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred -------Cc---ccHHHHHHHHHHHHCC-CCEecccc-ccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 00 0011223344444433 22333333 488888876655 5678999999999999986
No 472
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.65 E-value=3.8e-08 Score=96.04 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=57.5
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc---EEEECCEeCCCCCHHHH-----hhccEEEec
Q 020477 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG---SVVFKGENLLEMEPEER-----SLAGLFMSF 162 (325)
Q Consensus 91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G---~I~~~g~~i~~~~~~~~-----~~~~i~~~~ 162 (325)
+..+++++ |+|.+|++++|+|+||+|||||+++|+|+ ..++.+ .|-.+|.++..+....+ .+..+++.+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~--~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~ 218 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRY--TQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP 218 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcc--cCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence 46799999 99999999999999999999999999997 455543 33334444333221111 122477788
Q ss_pred cCCccCCCcchHHHH
Q 020477 163 QSPVEIPGVNNIDFL 177 (325)
Q Consensus 163 Q~~~~~~~~~~~~~~ 177 (325)
|+...+..+++.++.
T Consensus 219 ~d~s~~~rl~a~e~a 233 (434)
T PRK07196 219 ADESPLMRIKATELC 233 (434)
T ss_pred CCCChhhhHHHHHHH
Confidence 887665555555443
No 473
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.60 E-value=1.5e-07 Score=90.62 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=60.2
Q ss_pred hhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCccccee-----------eeEEEEeCCCEEEEEc
Q 020477 44 RHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILK-----------GVNLLVNEGEVHAIMG 112 (325)
Q Consensus 44 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~-----------~vsl~i~~Ge~~~lvG 112 (325)
+...+..|..+++...+..... .......+.++||++.|++ .+.+|+ |+++.|.+|+.++|+|
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~~-----~e~~~~ri~Fe~LTf~YP~-er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG 175 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGDD-----PEKAKNRVLFENLTPLYPN-ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVA 175 (415)
T ss_pred eccccHhHHHHHhCCCccCCCC-----ccccCCCeEEEEeeecCCC-ccceeecCccccceeeeeeEEEeCCCCEEEEEC
Confidence 3344567777777654432111 1122346999999999986 357896 9999999999999999
Q ss_pred CCCccHHHHHHHHhCC
Q 020477 113 KNGSGKSTLSKVLVGH 128 (325)
Q Consensus 113 ~NGsGKSTLl~~l~Gl 128 (325)
|.|+|||||++.|+..
T Consensus 176 ~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQA 191 (415)
T ss_pred CCCCChhHHHHHHHHh
Confidence 9999999999999885
No 474
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.55 E-value=1.1e-06 Score=76.47 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=44.8
Q ss_pred HHHHHHhcCCccccccccCCCCCChHHHHHHH--HHHHHHh-CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC
Q 020477 202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNE--ILQLAVL-GADLAILDEIDSGLDVDALRDVAKAVNGLLTP 272 (325)
Q Consensus 202 ~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~--iAraL~~-~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~ 272 (325)
+.+.++..++..-....+.. .+|+||+|++. +++.+-. +++++ |+|++|..+.+.+.+.|.++.++
T Consensus 127 i~~~l~~~~~~~iiv~nK~D-l~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 127 MIEWLKEYGIPVLIVLTKAD-KLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHcCCcEEEEEECcc-cCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 33445555553223334444 38999999987 5555544 34443 99999999999999999987654
No 475
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.54 E-value=1e-07 Score=82.58 Aligned_cols=38 Identities=29% Similarity=0.528 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE 147 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~ 147 (325)
+||+++|+|+||||||||+++|+|+ +.+ +.++|.++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~--l~~----~~i~gd~~~~ 39 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAAL--FSA----KFIDGDDLHP 39 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh--cCC----EEECCcccCC
Confidence 5999999999999999999999997 333 6888887743
No 476
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.53 E-value=1.3e-06 Score=92.47 Aligned_cols=49 Identities=20% Similarity=0.049 Sum_probs=43.2
Q ss_pred HhCCCEEEEeCcCcCCC-HHHHHHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020477 239 VLGADLAILDEIDSGLD-VDALRDVAKAVNGLLTPKNSLLMITHYRRLLE 287 (325)
Q Consensus 239 ~~~p~lLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~ 287 (325)
-.+|+++++|||+.+|| +..++.+.+.++.+++.|.+++++||+++.+.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID 682 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence 34899999999999999 78899999999999878889999999987553
No 477
>PRK08149 ATP synthase SpaL; Validated
Probab=98.50 E-value=1.7e-07 Score=91.31 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=55.5
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCc---cEEEECCEeCCCCCHHHHh---hccEEEeccC
Q 020477 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE---GSVVFKGENLLEMEPEERS---LAGLFMSFQS 164 (325)
Q Consensus 91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~---G~I~~~g~~i~~~~~~~~~---~~~i~~~~Q~ 164 (325)
+..+++++ +.+.+|++++|+|+||+|||||+++|++. ..++. |.|-.+|+++..+....+. ...+++++..
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~--~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEH--SEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcC--CCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 35799999 99999999999999999999999999997 45565 8888899887655433322 1345566554
Q ss_pred C
Q 020477 165 P 165 (325)
Q Consensus 165 ~ 165 (325)
.
T Consensus 215 s 215 (428)
T PRK08149 215 S 215 (428)
T ss_pred C
Confidence 3
No 478
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.48 E-value=1.2e-06 Score=83.71 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR 284 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~ 284 (325)
+++++|-++|+++++||+. |.++....++. +..|.+|+.+.|-.+
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTA----AETGHLVFGTLHTNS 231 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----HHcCCcEEEEEcCCC
Confidence 4677888999999999997 88887655543 345888999999744
No 479
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.47 E-value=3.4e-07 Score=89.66 Aligned_cols=54 Identities=24% Similarity=0.420 Sum_probs=42.6
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC---EeCCC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG---ENLLE 147 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g---~~i~~ 147 (325)
..+++++ |.+.+|++++|+|+||+|||||+++|+|+.. ..+.|.|.+.| +++..
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~~~vi~liGerg~ev~~ 208 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAE-EADVNVIALIGERGREVRE 208 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccc-cCCceEEEEECCCchHHHH
Confidence 4689988 9999999999999999999999999999731 23446676644 55543
No 480
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.45 E-value=1.9e-07 Score=91.17 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=56.8
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN 144 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~ 144 (325)
.+.++.++++..|.. +..+++++ |.|.+|++++|+|+||+|||||+++|+|+ ..++.|.+.+.|+.
T Consensus 127 p~~~~r~~v~~~l~t-Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~--~~~d~~vi~~iGeR 192 (433)
T PRK07594 127 PPAMVRQPITQPLMT-GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNA--PDADSNVLVLIGER 192 (433)
T ss_pred CCceeccCHhheeCC-Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCC--CCCCEEEEEEECCC
Confidence 346788888888864 46799999 99999999999999999999999999997 56788888777764
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.45 E-value=2.5e-07 Score=65.85 Aligned_cols=34 Identities=38% Similarity=0.557 Sum_probs=28.5
Q ss_pred eeeeEEEEeC-CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 95 LKGVNLLVNE-GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 95 L~~vsl~i~~-Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+++.++++.+ |+++.|.|+||||||||+.+|.=+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5556778875 579999999999999999988764
No 482
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.44 E-value=7.9e-07 Score=91.15 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCCCCCCC--------CccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHH
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--------TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNID 175 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p--------~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~ 175 (325)
..+.++|+||||+|||||++++.++ ..+ ..+-|.++|..+. ++.... +++ ++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~--~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i---------~~~-llg------ 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEE--AKKLKHTPFAEDAPFVEVDGTTLR-WDPREV---------TNP-LLG------ 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh--hhhccCCcccCCCCeEEEechhcc-CCHHHH---------hHH-hcC------
Confidence 3567999999999999999999986 222 2344677765442 111110 000 000
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCC
Q 020477 176 FLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255 (325)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD 255 (325)
.. ...........++..|+. +...+.+. .+||| +|+||| +..||
T Consensus 235 --------------~~---~~~~~~~a~~~l~~~gl~-~~~~g~v~-~asgG----------------vL~LDE-i~~Ld 278 (615)
T TIGR02903 235 --------------SV---HDPIYQGARRDLAETGVP-EPKTGLVT-DAHGG----------------VLFIDE-IGELD 278 (615)
T ss_pred --------------Cc---cHHHHHHHHHHHHHcCCC-chhcCchh-hcCCC----------------eEEEec-cccCC
Confidence 00 000111223345666764 34455554 48999 999999 89999
Q ss_pred HHHHHHHHHHHHh
Q 020477 256 VDALRDVAKAVNG 268 (325)
Q Consensus 256 ~~~~~~i~~~L~~ 268 (325)
+..+..+++.|.+
T Consensus 279 ~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 279 PLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999975
No 483
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=98.44 E-value=5.6e-06 Score=78.77 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhC--C
Q 020477 223 GFSGGERKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK--P 291 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~--~ 291 (325)
..|-||++-+++|.-|+ .+++||||||-+|.||..-+..+++. .+. +.-++|++-+.+.+.... .
T Consensus 275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~---~~Q~fvT~t~~~~~~~~~~~~ 350 (363)
T COG1195 275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IEL---GVQVFVTTTDLEDIDDNLDEN 350 (363)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-ccc---CCeEEEEccCHHHhhhhhhcc
Confidence 37999999999987664 37899999999999999999999888 333 334555665555554221 1
Q ss_pred cEEEEEeCCEE
Q 020477 292 TFIHIMEDGRI 302 (325)
Q Consensus 292 d~i~vl~~G~i 302 (325)
-+++.+.+|+|
T Consensus 351 ~~~f~V~~g~i 361 (363)
T COG1195 351 AQMFHVEDGKI 361 (363)
T ss_pred ceEEEEeccee
Confidence 25667778876
No 484
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.43 E-value=5.8e-06 Score=74.91 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=35.7
Q ss_pred HhCCCEEEEeCcCcCCCHHHHHHHHHHH-HhccC-CCcEEEEEeCChhHHhh
Q 020477 239 VLGADLAILDEIDSGLDVDALRDVAKAV-NGLLT-PKNSLLMITHYRRLLEF 288 (325)
Q Consensus 239 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~-~g~tvIivtHd~~~~~~ 288 (325)
+.+..++|+||...|=++.....+...+ ..+.+ .+..+|++||+.++...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 4577899999999999998877766544 44454 36789999999887554
No 485
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.40 E-value=7.2e-07 Score=68.62 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=36.7
Q ss_pred ccCCCCCChHHHH-HHHHHHH------HHh------CCCEEEEeCcCcCCCHHHHHHHHHHHHh
Q 020477 218 RNVNEGFSGGERK-RNEILQL------AVL------GADLAILDEIDSGLDVDALRDVAKAVNG 268 (325)
Q Consensus 218 ~~~~~~LSgGqrQ-Rv~iAra------L~~------~p~lLlLDEPtsgLD~~~~~~i~~~L~~ 268 (325)
+..+ .+||||+| .+.+|.+ +.. .|.+++|||||++||.+..+.++++|++
T Consensus 28 ~~~~-~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 28 RSFG-TLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEGG-GS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred ccCC-CCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3444 49999995 3333332 223 3799999999999999999999999864
No 486
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.36 E-value=5.9e-07 Score=78.36 Aligned_cols=72 Identities=10% Similarity=-0.045 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH--HhhhCCcEEEEEeCC
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL--LEFIKPTFIHIMEDG 300 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~--~~~~~~d~i~vl~~G 300 (325)
-|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+..++|.+||+.+|.+.. +... +|.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~-~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSL-CDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHh-CCEEEEEECC
Confidence 388999999999999999998887 7899999999999998886556799999997744 4444 6888887654
No 487
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.36 E-value=5.6e-07 Score=84.99 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=48.5
Q ss_pred EEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020477 82 GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN 144 (325)
Q Consensus 82 ~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~ 144 (325)
.++..|.. +..+++++ |.+.+|++++|+|+||+|||||+++|+|. ..++.|.+..-|++
T Consensus 48 ~~~~~l~t-Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~--~~~~~~vi~~iGer 106 (326)
T cd01136 48 PIDEVLPT-GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARG--TTADVNVIALIGER 106 (326)
T ss_pred cceeEcCC-CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCC--CCCCEEEEEEEecC
Confidence 34444543 46799999 99999999999999999999999999997 56788887776644
No 488
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.35 E-value=4.7e-06 Score=69.53 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=40.8
Q ss_pred HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH-----HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhc
Q 020477 202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA-----VLGADLAILDEIDSGLDVDALRDVAKAVNGL 269 (325)
Q Consensus 202 ~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL-----~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l 269 (325)
+...+...+...-....+.. .+|++++++....... ...++++ |+|++|....+++.+.|.++
T Consensus 102 ~~~~l~~~~~~vi~v~nK~D-~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 102 MLDWLEELGIPFLVVLTKAD-KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHcCCCEEEEEEchh-cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 34445555432122233343 3789988887665553 2345655 99999999999999998764
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.35 E-value=7e-07 Score=77.79 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQS 164 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~ 164 (325)
|++++|+||||||||||+++|++. ..+ .+.+.+..+....... ....+.+.+|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~--~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR--EQT---QLLVAHRYITRPASAG-SENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc--CCC---eEEEcCEECCCccchh-HHhheeEcHHH
Confidence 789999999999999999999996 322 5778887765432211 11235555554
No 490
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.34 E-value=4e-07 Score=80.19 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++|++++|+||||||||||+++|++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999999996
No 491
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.34 E-value=4.6e-07 Score=90.26 Aligned_cols=63 Identities=19% Similarity=0.352 Sum_probs=55.8
Q ss_pred EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020477 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146 (325)
Q Consensus 80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~ 146 (325)
+.|++..|+. +.+++++++.+..|+.++|+|+||+|||||++.|.|+ .+|.+|++.+.+..+.
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gl--lpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGL--LPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhcc--CCCCCCcEEEecchhh
Confidence 4588888864 5699999999999999999999999999999999998 6789999998876653
No 492
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.31 E-value=2.1e-06 Score=73.97 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEE
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVF 140 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~ 140 (325)
|++++|+||||||||||++.|++. +.+ .|.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~--~~~-~~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARAR--LAG-DPRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--cCc-CCcEEE
Confidence 678999999999999999999996 322 355544
No 493
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.28 E-value=9.8e-07 Score=86.47 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=46.6
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020477 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145 (325)
Q Consensus 91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i 145 (325)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|. ..++.|.|.+.|+.-
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~--~~~d~~vi~~iGer~ 201 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARG--TQCDVNVIALIGERG 201 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCC--CCCCeEEEEEEccCh
Confidence 46799999 99999999999999999999999999997 567889988888653
No 494
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.28 E-value=1.3e-06 Score=81.44 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=44.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHH
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLH 178 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~ 178 (325)
.++||.|+||||||||+++|.++....|.+|+|.+.+.|-...+...+...+ + .|.......++...++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g--~-~~~~g~P~s~D~~~l~~ 132 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERN--L-MKKKGFPESYDMHRLVK 132 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcC--C-ccccCCChhccHHHHHH
Confidence 4899999999999999999999732236788888766654444444443333 2 24443333344444433
No 495
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.25 E-value=5.1e-07 Score=79.98 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++|++++|+|+||||||||++.|+++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999997
No 496
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.24 E-value=6.5e-06 Score=66.77 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-----CCcEEEEEeCChh
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-----PKNSLLMITHYRR 284 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvIivtHd~~ 284 (325)
.+......+...++.++++||.-.. +......+.+.+..+.. .+..+|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4455556666778999999998665 56677788888888753 4678899988653
No 497
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.21 E-value=1.2e-06 Score=85.66 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=48.7
Q ss_pred EEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020477 83 LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145 (325)
Q Consensus 83 ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i 145 (325)
++..+.. +..+++++ |.+.+|++++|+|+||+|||||+++|+|. ..++.|.+...|++-
T Consensus 125 i~~~l~t-G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~--~~~~~~vi~~iG~~~ 183 (422)
T TIGR02546 125 IDQPLPT-GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARG--ASADVNVIALIGERG 183 (422)
T ss_pred cccccCC-Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCC--CCCCEEEEEEEccCC
Confidence 3334432 46799999 99999999999999999999999999997 568888888766543
No 498
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.20 E-value=2.2e-06 Score=83.53 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=50.0
Q ss_pred EEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020477 83 LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146 (325)
Q Consensus 83 ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~ 146 (325)
++..|.. +..+++++ |.+.+|++++|+|+||+|||||+++|++. ..++.|.|.+.|++..
T Consensus 117 ~~~~~~t-Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~--~~~~~gvi~~~Ger~~ 176 (413)
T TIGR03497 117 IRDPLET-GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARN--AKADINVIALIGERGR 176 (413)
T ss_pred hhhhccc-cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCeEEEEEEccchH
Confidence 3444543 46799999 99999999999999999999999999997 5688898888887543
No 499
>PLN02796 D-glycerate 3-kinase
Probab=98.19 E-value=5.1e-07 Score=85.47 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=44.2
Q ss_pred ccceeeeEEEE---eCCCE-----EEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCC
Q 020477 92 QEILKGVNLLV---NEGEV-----HAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLE 147 (325)
Q Consensus 92 ~~iL~~vsl~i---~~Ge~-----~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~ 147 (325)
..+++++++++ ++|+. +||+|+||||||||++.|.++ +.+ ..|.|.++|..+..
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~l--L~~~g~~~g~IsiDdfYLt~ 143 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYL--FNATGRRAASLSIDDFYLTA 143 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHH--hcccCCceeEEEECCcccch
Confidence 35788888887 67876 999999999999999999997 333 36889999987644
No 500
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.18 E-value=2.1e-06 Score=83.69 Aligned_cols=64 Identities=25% Similarity=0.301 Sum_probs=51.9
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN 144 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~ 144 (325)
.++-..++..|.. +..+++.+ |.+.+|++++|+|+||+|||||+++|+++ ..++.+.+...|++
T Consensus 111 ~~~R~~~~~~~~t-Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~--~~~~~~vi~~iGer 174 (411)
T TIGR03496 111 PLKRAPIDEPLDV-GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARY--TEADVVVVGLIGER 174 (411)
T ss_pred HHhccCcceEeee-eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcC--CCCCEEEEEEEecC
Confidence 4555666667753 46789999 99999999999999999999999999997 56777766666654
Done!