Query 020477
Match_columns 325
No_of_seqs 453 out of 2296
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 03:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 6.7E-56 2.3E-60 421.4 28.3 226 73-310 20-250 (366)
2 2zu0_C Probable ATP-dependent 100.0 3.6E-55 1.2E-59 402.2 31.4 245 74-320 17-261 (267)
3 3tif_A Uncharacterized ABC tra 100.0 1.7E-55 5.8E-60 397.2 27.5 225 77-310 1-231 (235)
4 3gfo_A Cobalt import ATP-bindi 100.0 6E-55 2E-59 402.0 26.7 223 75-310 5-230 (275)
5 2pcj_A ABC transporter, lipopr 100.0 1.2E-54 4.2E-59 388.9 27.4 217 76-307 3-222 (224)
6 1ji0_A ABC transporter; ATP bi 100.0 1.2E-54 4.1E-59 392.8 27.1 221 75-310 4-225 (240)
7 2d2e_A SUFC protein; ABC-ATPas 100.0 2.4E-54 8.1E-59 393.2 28.5 236 77-318 3-238 (250)
8 1g6h_A High-affinity branched- 100.0 1E-54 3.5E-59 397.1 26.0 227 75-310 5-239 (257)
9 3rlf_A Maltose/maltodextrin im 100.0 1.6E-54 5.6E-59 414.1 27.6 217 77-310 3-220 (381)
10 2olj_A Amino acid ABC transpor 100.0 5.5E-54 1.9E-58 393.3 28.8 222 75-310 22-245 (263)
11 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-54 4.2E-59 412.3 25.1 221 76-310 3-225 (359)
12 1b0u_A Histidine permease; ABC 100.0 5E-54 1.7E-58 393.6 28.2 222 76-310 5-239 (262)
13 4g1u_C Hemin import ATP-bindin 100.0 5.4E-54 1.8E-58 394.1 27.3 219 75-310 9-234 (266)
14 3nh6_A ATP-binding cassette SU 100.0 4.6E-54 1.6E-58 401.3 25.9 260 40-319 16-281 (306)
15 1vpl_A ABC transporter, ATP-bi 100.0 1.6E-53 5.4E-58 388.8 28.4 221 74-310 12-232 (256)
16 1z47_A CYSA, putative ABC-tran 100.0 2.8E-53 9.5E-58 402.9 27.1 220 74-310 11-232 (355)
17 2it1_A 362AA long hypothetical 100.0 4E-53 1.4E-57 403.1 27.1 217 77-310 3-220 (362)
18 2yyz_A Sugar ABC transporter, 100.0 3.2E-53 1.1E-57 403.4 25.6 217 77-310 3-220 (359)
19 1v43_A Sugar-binding transport 100.0 6.4E-53 2.2E-57 403.0 25.8 217 77-310 11-228 (372)
20 1g29_1 MALK, maltose transport 100.0 1E-52 3.6E-57 402.0 26.9 217 77-310 3-226 (372)
21 1oxx_K GLCV, glucose, ABC tran 100.0 5.2E-53 1.8E-57 401.6 23.2 217 77-310 3-227 (353)
22 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-52 3.8E-57 398.2 24.9 213 77-310 1-214 (348)
23 2ihy_A ABC transporter, ATP-bi 100.0 1.3E-52 4.6E-57 387.3 23.0 225 75-310 19-249 (279)
24 2yz2_A Putative ABC transporte 100.0 4E-52 1.4E-56 381.8 24.2 217 77-309 2-223 (266)
25 2onk_A Molybdate/tungstate ABC 100.0 4.8E-52 1.7E-56 375.7 23.6 212 77-310 1-213 (240)
26 2ixe_A Antigen peptide transpo 100.0 1.1E-51 3.6E-56 379.8 25.0 224 75-310 14-242 (271)
27 2ff7_A Alpha-hemolysin translo 100.0 2.2E-51 7.6E-56 372.9 24.5 212 77-309 7-228 (247)
28 4a82_A Cystic fibrosis transme 100.0 2.9E-50 1E-54 406.3 32.6 273 28-318 290-567 (578)
29 3qf4_A ABC transporter, ATP-bi 100.0 4.1E-50 1.4E-54 405.8 31.1 265 29-310 293-563 (587)
30 2qi9_C Vitamin B12 import ATP- 100.0 1.1E-50 3.8E-55 368.6 24.2 210 76-310 3-219 (249)
31 2nq2_C Hypothetical ABC transp 100.0 2.7E-50 9.1E-55 367.0 26.1 211 76-310 3-214 (253)
32 3b60_A Lipid A export ATP-bind 100.0 2.7E-49 9.1E-54 399.7 33.5 268 28-319 294-571 (582)
33 3b5x_A Lipid A export ATP-bind 100.0 9.9E-50 3.4E-54 402.8 27.4 267 28-318 294-570 (582)
34 2ghi_A Transport protein; mult 100.0 1.2E-49 4E-54 364.2 24.6 213 76-310 16-239 (260)
35 1mv5_A LMRA, multidrug resista 100.0 5.8E-51 2E-55 369.3 15.3 212 77-310 1-223 (243)
36 2yl4_A ATP-binding cassette SU 100.0 1.4E-48 4.8E-53 395.3 33.5 266 28-310 291-567 (595)
37 3qf4_B Uncharacterized ABC tra 100.0 1.9E-49 6.6E-54 401.7 26.7 272 28-319 306-582 (598)
38 2pjz_A Hypothetical protein ST 100.0 3.5E-49 1.2E-53 361.4 24.1 208 77-310 1-212 (263)
39 3gd7_A Fusion complex of cysti 100.0 1.5E-49 5.2E-54 381.8 22.0 213 75-310 17-239 (390)
40 1sgw_A Putative ABC transporte 100.0 5.3E-50 1.8E-54 356.2 16.1 203 75-302 8-210 (214)
41 2pze_A Cystic fibrosis transme 100.0 7E-49 2.4E-53 352.6 22.0 204 76-310 5-215 (229)
42 2cbz_A Multidrug resistance-as 100.0 2.8E-48 9.4E-53 350.5 23.3 205 77-310 3-214 (237)
43 4f4c_A Multidrug resistance pr 100.0 3.2E-48 1.1E-52 422.0 28.4 273 32-320 1031-1309(1321)
44 4f4c_A Multidrug resistance pr 100.0 1.5E-46 5.1E-51 409.0 31.7 274 29-320 366-646 (1321)
45 3g5u_A MCG1178, multidrug resi 100.0 1.4E-45 4.8E-50 400.5 30.4 270 31-318 340-616 (1284)
46 2bbs_A Cystic fibrosis transme 100.0 1.2E-45 4.1E-50 342.4 20.0 200 75-310 38-244 (290)
47 3g5u_A MCG1178, multidrug resi 100.0 6.3E-45 2.2E-49 395.3 26.5 271 34-320 986-1263(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 8.3E-42 2.8E-46 345.3 21.0 203 75-310 355-560 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 7.3E-42 2.5E-46 341.9 20.2 203 75-310 285-490 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.3E-41 7.9E-46 337.9 18.7 205 74-309 266-473 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 5.6E-41 1.9E-45 339.3 11.4 202 76-300 82-304 (607)
52 2iw3_A Elongation factor 3A; a 100.0 5.1E-40 1.8E-44 344.0 18.8 211 75-307 669-981 (986)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 7.3E-41 2.5E-45 334.7 10.4 200 78-300 21-234 (538)
54 3j16_B RLI1P; ribosome recycli 100.0 9.3E-40 3.2E-44 330.0 15.0 199 81-310 350-556 (608)
55 2iw3_A Elongation factor 3A; a 100.0 5.3E-38 1.8E-42 328.8 24.2 197 76-310 434-632 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 5.9E-39 2E-43 328.9 16.4 208 92-310 31-295 (670)
57 3ux8_A Excinuclease ABC, A sub 100.0 9.5E-38 3.3E-42 320.0 15.6 107 201-310 522-637 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 5.8E-38 2E-42 316.9 12.8 206 76-302 68-299 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 5.6E-37 1.9E-41 306.2 11.7 196 81-301 3-214 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 2.1E-34 7.3E-39 298.8 17.6 222 74-310 499-824 (842)
61 3pih_A Uvrabc system protein A 100.0 3.4E-34 1.2E-38 299.5 18.6 108 200-310 783-899 (916)
62 4aby_A DNA repair protein RECN 100.0 5E-33 1.7E-37 268.9 20.1 210 93-306 49-381 (415)
63 2r6f_A Excinuclease ABC subuni 100.0 2E-33 6.7E-38 292.5 17.3 221 75-310 627-939 (972)
64 2ygr_A Uvrabc system protein A 100.0 9.6E-33 3.3E-37 288.2 18.2 106 202-310 843-957 (993)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.3E-36 1.1E-40 295.3 -15.0 197 74-310 115-335 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 3.2E-29 1.1E-33 239.3 18.7 85 217-304 274-364 (365)
67 4gp7_A Metallophosphoesterase; 100.0 1.4E-30 4.7E-35 222.9 3.6 149 97-289 1-165 (171)
68 1e69_A Chromosome segregation 100.0 2.7E-28 9.2E-33 229.0 13.4 82 217-302 214-301 (322)
69 3b85_A Phosphate starvation-in 99.9 3E-31 1E-35 234.5 -8.9 150 92-288 13-163 (208)
70 2v9p_A Replication protein E1; 99.9 8.3E-32 2.8E-36 250.6 -24.9 208 30-311 56-264 (305)
71 1ye8_A Protein THEP1, hypothet 99.9 3.3E-27 1.1E-31 203.6 4.4 148 107-304 2-159 (178)
72 1tq4_A IIGP1, interferon-induc 99.9 3.9E-29 1.3E-33 241.6 -9.5 169 92-294 36-247 (413)
73 1znw_A Guanylate kinase, GMP k 99.9 2.4E-29 8.1E-34 221.4 -16.6 181 92-298 9-202 (207)
74 3b9q_A Chloroplast SRP recepto 99.9 3.9E-27 1.3E-31 219.3 -2.7 178 95-303 90-285 (302)
75 2dpy_A FLII, flagellum-specifi 99.9 2.4E-27 8.1E-32 231.2 -6.9 193 75-308 129-339 (438)
76 2o5v_A DNA replication and rep 99.9 2.6E-23 8.9E-28 197.7 17.8 80 223-310 265-353 (359)
77 1z6g_A Guanylate kinase; struc 99.9 1.9E-28 6.3E-33 217.8 -17.6 178 92-289 10-200 (218)
78 4ad8_A DNA repair protein RECN 99.9 3.9E-24 1.3E-28 212.9 10.9 75 223-300 396-473 (517)
79 2og2_A Putative signal recogni 99.9 8.9E-26 3E-30 214.5 -1.5 177 96-303 148-342 (359)
80 2obl_A ESCN; ATPase, hydrolase 99.9 4E-25 1.4E-29 209.5 0.6 194 75-308 43-250 (347)
81 2pt7_A CAG-ALFA; ATPase, prote 99.9 3.1E-25 1.1E-29 209.0 -1.8 132 94-301 160-291 (330)
82 3qkt_A DNA double-strand break 99.9 3.7E-22 1.3E-26 188.5 17.7 79 217-298 243-327 (339)
83 1cr0_A DNA primase/helicase; R 99.9 1.3E-23 4.6E-28 194.2 6.5 184 92-302 22-237 (296)
84 2o8b_B DNA mismatch repair pro 99.9 8.4E-24 2.9E-28 224.3 5.7 170 74-303 747-930 (1022)
85 3pih_A Uvrabc system protein A 99.9 7.4E-23 2.5E-27 214.1 11.6 106 202-310 444-557 (916)
86 3sop_A Neuronal-specific septi 99.9 2.6E-25 8.8E-30 203.9 -6.5 150 107-286 4-153 (270)
87 1tf7_A KAIC; homohexamer, hexa 99.9 6.5E-23 2.2E-27 204.4 9.9 173 77-301 257-444 (525)
88 3aez_A Pantothenate kinase; tr 99.9 1.7E-26 5.8E-31 216.0 -15.3 182 75-300 41-245 (312)
89 1tf7_A KAIC; homohexamer, hexa 99.9 4.4E-25 1.5E-29 220.1 -7.5 181 77-299 12-209 (525)
90 2ehv_A Hypothetical protein PH 99.9 3.4E-23 1.2E-27 185.4 2.7 183 77-298 6-206 (251)
91 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 2.2E-21 7.5E-26 162.2 11.7 84 216-302 51-142 (148)
92 3thx_A DNA mismatch repair pro 99.8 1.4E-21 4.6E-26 205.3 10.8 165 75-308 629-808 (934)
93 1w1w_A Structural maintenance 99.8 1.5E-20 5E-25 182.9 15.4 74 223-298 333-410 (430)
94 2r6f_A Excinuclease ABC subuni 99.8 4.3E-21 1.5E-25 200.1 12.3 104 204-310 486-597 (972)
95 2jeo_A Uridine-cytidine kinase 99.8 9.6E-23 3.3E-27 183.7 -1.7 170 90-301 10-180 (245)
96 3thx_B DNA mismatch repair pro 99.8 6.6E-22 2.3E-26 207.1 3.9 155 76-287 639-800 (918)
97 2ygr_A Uvrabc system protein A 99.8 8.2E-21 2.8E-25 198.6 11.4 104 204-310 503-614 (993)
98 2vf7_A UVRA2, excinuclease ABC 99.8 2.1E-20 7E-25 194.2 12.1 103 205-310 362-472 (842)
99 2eyu_A Twitching motility prot 99.8 1.1E-21 3.8E-26 178.9 1.0 139 77-296 5-144 (261)
100 1ewq_A DNA mismatch repair pro 99.8 6.3E-21 2.1E-25 196.9 6.2 146 75-287 548-702 (765)
101 2w0m_A SSO2452; RECA, SSPF, un 99.8 3.7E-20 1.3E-24 163.4 7.3 168 92-300 9-192 (235)
102 4a74_A DNA repair and recombin 99.8 4.4E-21 1.5E-25 169.5 1.3 150 101-300 21-200 (231)
103 3szr_A Interferon-induced GTP- 99.8 2.2E-22 7.5E-27 203.8 -9.5 192 76-308 9-232 (608)
104 1pui_A ENGB, probable GTP-bind 99.8 3.3E-21 1.1E-25 168.1 -0.9 182 77-275 3-202 (210)
105 1rj9_A FTSY, signal recognitio 99.8 3.7E-21 1.3E-25 179.1 -0.8 153 104-284 101-259 (304)
106 2qnr_A Septin-2, protein NEDD5 99.8 9.8E-22 3.4E-26 182.8 -4.9 165 81-284 2-168 (301)
107 2i3b_A HCR-ntpase, human cance 99.8 9.5E-22 3.3E-26 171.0 -6.1 159 105-306 1-169 (189)
108 1wb9_A DNA mismatch repair pro 99.8 1.1E-19 3.6E-24 188.7 2.0 169 75-303 575-748 (800)
109 3asz_A Uridine kinase; cytidin 99.8 5.2E-22 1.8E-26 174.2 -13.4 145 102-283 3-161 (211)
110 1nlf_A Regulatory protein REPA 99.7 6.9E-18 2.4E-22 154.6 10.0 153 101-286 26-184 (279)
111 3jvv_A Twitching mobility prot 99.7 6.4E-19 2.2E-23 167.4 1.5 145 81-298 92-244 (356)
112 3kta_B Chromosome segregation 99.7 2E-17 6.9E-22 141.6 10.1 77 223-302 64-146 (173)
113 2qag_C Septin-7; cell cycle, c 99.7 2.3E-19 7.9E-24 173.7 -2.6 167 75-285 9-179 (418)
114 1pzn_A RAD51, DNA repair and r 99.7 3.2E-19 1.1E-23 169.2 -2.3 147 93-287 118-290 (349)
115 2qag_B Septin-6, protein NEDD5 99.7 1.8E-18 6.3E-23 167.1 -4.4 186 77-282 16-218 (427)
116 2cvh_A DNA repair and recombin 99.7 1.1E-16 3.9E-21 140.2 7.2 154 92-300 6-185 (220)
117 2f1r_A Molybdopterin-guanine d 99.6 8.2E-19 2.8E-23 150.0 -8.6 140 106-273 3-163 (171)
118 1s96_A Guanylate kinase, GMP k 99.6 5.4E-17 1.9E-21 144.1 2.0 136 97-288 8-145 (219)
119 2bdt_A BH3686; alpha-beta prot 99.6 1.2E-19 4.3E-24 156.3 -15.0 172 105-311 2-182 (189)
120 1lw7_A Transcriptional regulat 99.6 7E-19 2.4E-23 167.5 -12.2 163 94-297 157-341 (365)
121 2gza_A Type IV secretion syste 99.6 1.1E-17 3.8E-22 159.2 -4.1 153 79-300 137-302 (361)
122 1n0w_A DNA repair protein RAD5 99.6 1E-15 3.4E-20 136.1 7.6 151 101-300 20-209 (243)
123 3e70_C DPA, signal recognition 99.6 1.3E-16 4.4E-21 149.8 1.0 167 102-303 126-307 (328)
124 1zp6_A Hypothetical protein AT 99.6 1.5E-17 5.2E-22 143.1 -5.2 152 101-281 5-158 (191)
125 3auy_A DNA double-strand break 99.6 1E-14 3.6E-19 139.0 13.5 73 223-298 280-359 (371)
126 2bbw_A Adenylate kinase 4, AK4 99.6 2.1E-18 7.2E-23 155.1 -13.5 150 104-273 26-200 (246)
127 2ewv_A Twitching motility prot 99.5 1.2E-15 4.1E-20 145.7 3.4 118 94-284 127-245 (372)
128 2rcn_A Probable GTPase ENGC; Y 99.5 7.8E-15 2.7E-19 139.0 8.6 139 94-270 205-345 (358)
129 1nij_A Hypothetical protein YJ 99.5 5E-18 1.7E-22 158.9 -13.2 162 106-286 5-192 (318)
130 1htw_A HI0065; nucleotide-bind 99.5 8.9E-18 3E-22 141.8 -10.8 87 80-178 10-96 (158)
131 2yhs_A FTSY, cell division pro 99.5 5.2E-16 1.8E-20 152.1 -2.6 158 95-281 283-447 (503)
132 2qm8_A GTPase/ATPase; G protei 99.5 3E-18 1E-22 161.7 -18.0 185 77-271 29-260 (337)
133 3ec2_A DNA replication protein 99.5 2.2E-14 7.4E-19 122.5 6.4 45 239-283 98-143 (180)
134 2oap_1 GSPE-2, type II secreti 99.5 4.3E-17 1.5E-21 161.6 -13.2 175 93-290 248-457 (511)
135 2kjq_A DNAA-related protein; s 99.5 1.6E-14 5.6E-19 120.4 3.9 43 239-282 81-124 (149)
136 3lda_A DNA repair protein RAD5 99.5 5.3E-14 1.8E-18 135.4 7.3 60 240-300 272-363 (400)
137 1udx_A The GTP-binding protein 99.5 5.1E-15 1.7E-19 143.1 0.1 146 95-280 147-305 (416)
138 1sxj_E Activator 1 40 kDa subu 99.5 1.1E-13 3.7E-18 130.1 9.2 138 107-285 38-176 (354)
139 1odf_A YGR205W, hypothetical 3 99.4 1.2E-14 3.9E-19 134.3 -2.2 130 103-257 29-168 (290)
140 1p9r_A General secretion pathw 99.4 1.4E-16 4.8E-21 154.2 -17.2 152 77-246 143-314 (418)
141 3c8u_A Fructokinase; YP_612366 99.4 7.9E-16 2.7E-20 134.9 -12.1 42 102-145 19-63 (208)
142 2yv5_A YJEQ protein; hydrolase 99.4 3.4E-14 1.2E-18 131.9 -1.9 128 101-236 161-300 (302)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 8.5E-16 2.9E-20 147.4 -14.2 177 101-310 16-210 (392)
144 1lvg_A Guanylate kinase, GMP k 99.3 7.8E-16 2.7E-20 134.2 -14.2 56 234-298 116-172 (198)
145 2x8a_A Nuclear valosin-contain 99.3 5.8E-16 2E-20 141.9 -17.2 146 92-267 33-191 (274)
146 1sq5_A Pantothenate kinase; P- 99.3 6.2E-15 2.1E-19 137.2 -11.2 92 76-179 36-151 (308)
147 3euj_A Chromosome partition pr 99.3 1.9E-12 6.4E-17 127.0 4.3 63 79-148 8-70 (483)
148 1vma_A Cell division protein F 99.2 3.1E-12 1.1E-16 118.8 4.6 99 97-252 96-197 (306)
149 1ls1_A Signal recognition part 99.2 3.2E-11 1.1E-15 111.5 10.4 143 78-281 77-220 (295)
150 1in4_A RUVB, holliday junction 99.2 3.8E-15 1.3E-19 140.0 -16.6 180 77-289 18-208 (334)
151 2r6a_A DNAB helicase, replicat 99.2 1.4E-11 4.7E-16 120.5 6.2 181 92-302 190-401 (454)
152 1u0l_A Probable GTPase ENGC; p 99.2 4.3E-13 1.5E-17 124.3 -4.3 112 100-226 164-294 (301)
153 2ius_A DNA translocase FTSK; n 99.2 2.1E-12 7E-17 127.6 -0.8 177 97-296 159-361 (512)
154 2px0_A Flagellar biosynthesis 99.1 3.6E-11 1.2E-15 111.2 6.4 140 103-305 103-247 (296)
155 2dr3_A UPF0273 protein PH0284; 99.1 8.7E-12 3E-16 110.6 1.8 59 240-299 127-196 (247)
156 1t9h_A YLOQ, probable GTPase E 99.1 3.2E-12 1.1E-16 118.8 -1.9 125 100-231 168-303 (307)
157 1oix_A RAS-related protein RAB 99.1 2.9E-10 9.9E-15 97.5 7.8 37 230-268 152-188 (191)
158 2zr9_A Protein RECA, recombina 99.0 3.1E-10 1.1E-14 107.2 7.6 77 230-307 126-237 (349)
159 1qhl_A Protein (cell division 99.0 4.6E-12 1.6E-16 112.8 -5.5 76 77-164 9-91 (227)
160 3tr0_A Guanylate kinase, GMP k 99.0 2.9E-11 9.9E-16 104.5 -0.5 63 99-168 1-63 (205)
161 1iy2_A ATP-dependent metallopr 98.9 6.7E-13 2.3E-17 121.1 -14.5 159 79-266 51-222 (278)
162 3lnc_A Guanylate kinase, GMP k 98.9 2.2E-10 7.5E-15 101.5 2.1 37 92-128 14-51 (231)
163 1ixz_A ATP-dependent metallopr 98.9 6.7E-13 2.3E-17 119.3 -15.8 160 78-266 26-198 (254)
164 2f9l_A RAB11B, member RAS onco 98.9 3.7E-09 1.3E-13 90.9 7.8 36 232-269 130-165 (199)
165 3nwj_A ATSK2; P loop, shikimat 98.8 1.4E-10 4.7E-15 104.7 -2.2 53 75-128 15-71 (250)
166 3k1j_A LON protease, ATP-depen 98.8 7.4E-10 2.5E-14 111.9 2.9 165 81-268 38-227 (604)
167 1svm_A Large T antigen; AAA+ f 98.8 1.7E-11 5.8E-16 117.0 -9.0 154 92-277 156-326 (377)
168 2xau_A PRE-mRNA-splicing facto 98.7 1.2E-08 4.1E-13 105.8 7.4 67 224-290 191-259 (773)
169 4eun_A Thermoresistant glucoki 98.7 1.4E-09 4.7E-14 94.2 -0.9 47 94-146 18-64 (200)
170 3kta_A Chromosome segregation 98.7 2.1E-08 7.3E-13 84.9 5.5 51 79-136 3-55 (182)
171 4e22_A Cytidylate kinase; P-lo 98.6 2.6E-09 9E-14 96.1 -0.8 59 103-164 25-95 (252)
172 3a00_A Guanylate kinase, GMP k 98.6 6.6E-09 2.3E-13 88.9 1.4 24 105-128 1-24 (186)
173 2ce7_A Cell division protein F 98.6 2.8E-08 9.5E-13 97.5 5.9 62 225-286 92-167 (476)
174 2e87_A Hypothetical protein PH 98.6 8E-08 2.7E-12 90.7 8.9 60 223-284 231-293 (357)
175 2qtf_A Protein HFLX, GTP-bindi 98.6 1.9E-07 6.3E-12 88.6 11.2 150 104-270 177-352 (364)
176 3hr8_A Protein RECA; alpha and 98.6 3.8E-08 1.3E-12 93.0 6.1 41 101-143 57-98 (356)
177 1jjv_A Dephospho-COA kinase; P 98.6 2.6E-08 8.9E-13 86.2 3.9 70 224-298 60-131 (206)
178 3t34_A Dynamin-related protein 98.6 1.4E-07 4.9E-12 89.0 9.0 57 224-281 155-212 (360)
179 3uie_A Adenylyl-sulfate kinase 98.5 2.3E-09 8E-14 92.7 -3.6 60 81-145 3-64 (200)
180 2dy1_A Elongation factor G; tr 98.5 3E-08 1E-12 101.3 3.9 137 99-286 3-139 (665)
181 2j41_A Guanylate kinase; GMP, 98.5 4.7E-08 1.6E-12 84.1 3.9 35 100-136 1-35 (207)
182 3tqc_A Pantothenate kinase; bi 98.5 8.6E-10 2.9E-14 102.9 -9.0 57 83-141 66-128 (321)
183 3vaa_A Shikimate kinase, SK; s 98.5 6.1E-08 2.1E-12 83.7 3.2 38 91-128 11-48 (199)
184 4a1f_A DNAB helicase, replicat 98.5 1.6E-07 5.4E-12 88.2 6.2 129 93-281 34-164 (338)
185 1fnn_A CDC6P, cell division co 98.4 1.3E-06 4.5E-11 82.1 12.1 48 240-288 124-174 (389)
186 1zu4_A FTSY; GTPase, signal re 98.4 3.5E-08 1.2E-12 92.1 0.1 51 95-147 95-145 (320)
187 1kgd_A CASK, peripheral plasma 98.4 9.9E-08 3.4E-12 81.1 2.3 35 104-140 4-39 (180)
188 2vp4_A Deoxynucleoside kinase; 98.3 1.4E-07 4.7E-12 83.4 2.2 39 101-145 16-54 (230)
189 2dhr_A FTSH; AAA+ protein, hex 98.3 4.4E-09 1.5E-13 103.7 -8.6 146 78-252 41-187 (499)
190 3ney_A 55 kDa erythrocyte memb 98.3 2.7E-07 9.1E-12 80.1 2.7 51 99-151 13-74 (197)
191 1rz3_A Hypothetical protein rb 98.3 1.4E-07 4.7E-12 81.7 0.5 46 102-149 19-64 (201)
192 3kl4_A SRP54, signal recogniti 98.2 3.6E-06 1.2E-10 81.5 9.3 39 104-144 96-134 (433)
193 1v5w_A DMC1, meiotic recombina 98.2 5.4E-06 1.8E-10 77.8 10.0 28 101-128 118-145 (343)
194 2z43_A DNA repair and recombin 98.2 4.4E-06 1.5E-10 77.7 9.1 55 229-283 188-258 (324)
195 3tau_A Guanylate kinase, GMP k 98.2 1E-06 3.4E-11 76.6 3.7 26 103-128 6-31 (208)
196 1knq_A Gluconate kinase; ALFA/ 98.1 4.1E-07 1.4E-11 76.4 1.1 38 103-146 6-43 (175)
197 3bh0_A DNAB-like replicative h 98.1 2.8E-06 9.6E-11 78.8 6.5 53 224-281 134-189 (315)
198 3cr8_A Sulfate adenylyltranfer 98.1 4.6E-07 1.6E-11 90.4 0.7 43 101-145 365-409 (552)
199 2qby_A CDC6 homolog 1, cell di 98.1 2.2E-06 7.5E-11 80.1 5.1 26 103-128 43-68 (386)
200 2z4s_A Chromosomal replication 98.1 1.7E-06 5.9E-11 84.0 4.4 70 240-310 193-265 (440)
201 2ffh_A Protein (FFH); SRP54, s 98.1 5.3E-06 1.8E-10 80.1 7.5 59 80-146 79-137 (425)
202 1cke_A CK, MSSA, protein (cyti 98.0 2.1E-07 7.1E-12 81.4 -3.6 36 105-140 5-41 (227)
203 2qt1_A Nicotinamide riboside k 98.0 3.1E-06 1E-10 73.1 3.9 28 101-128 17-44 (207)
204 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 3.6E-06 1.2E-10 69.5 3.6 32 95-127 14-45 (149)
205 3b9p_A CG5977-PA, isoform A; A 98.0 6.2E-05 2.1E-09 68.3 12.2 60 225-284 97-170 (297)
206 1kag_A SKI, shikimate kinase I 98.0 2.8E-06 9.6E-11 70.9 2.6 25 104-128 3-27 (173)
207 3ice_A Transcription terminati 97.9 7.8E-07 2.7E-11 84.5 -1.4 51 77-128 133-197 (422)
208 2p67_A LAO/AO transport system 97.9 5.3E-07 1.8E-11 84.6 -3.1 64 78-145 31-94 (341)
209 1ypw_A Transitional endoplasmi 97.9 9.4E-06 3.2E-10 84.5 5.7 29 100-128 233-261 (806)
210 3lxx_A GTPase IMAP family memb 97.9 9.7E-05 3.3E-09 65.0 11.4 42 240-281 111-154 (239)
211 2www_A Methylmalonic aciduria 97.8 4.3E-06 1.5E-10 78.7 0.5 41 103-145 72-112 (349)
212 4eaq_A DTMP kinase, thymidylat 97.7 9.5E-06 3.3E-10 71.7 2.3 45 94-141 12-59 (229)
213 2q6t_A DNAB replication FORK h 97.7 4.4E-05 1.5E-09 74.0 6.9 161 92-281 187-361 (444)
214 3qks_A DNA double-strand break 97.7 1.9E-05 6.4E-10 68.5 3.6 32 95-127 14-45 (203)
215 3cf0_A Transitional endoplasmi 97.7 9.6E-05 3.3E-09 67.7 8.3 28 101-128 45-72 (301)
216 1m2o_B GTP-binding protein SAR 97.7 3.4E-05 1.2E-09 65.4 4.5 51 93-144 12-68 (190)
217 3m6a_A ATP-dependent protease 97.7 5E-06 1.7E-10 82.8 -0.9 59 80-143 86-144 (543)
218 1u94_A RECA protein, recombina 97.7 0.00049 1.7E-08 64.8 12.9 36 92-127 48-85 (356)
219 1f6b_A SAR1; gtpases, N-termin 97.6 1E-05 3.5E-10 69.3 0.8 59 84-144 6-70 (198)
220 1m7g_A Adenylylsulfate kinase; 97.6 7.6E-06 2.6E-10 71.0 -0.1 41 101-143 21-63 (211)
221 2pez_A Bifunctional 3'-phospho 97.6 2.4E-05 8.1E-10 65.8 3.0 39 103-144 3-43 (179)
222 1mky_A Probable GTP-binding pr 97.6 5.5E-05 1.9E-09 73.2 5.2 39 107-145 182-230 (439)
223 1y63_A LMAJ004144AAA protein; 97.6 3E-05 1E-09 65.7 2.9 31 97-127 2-32 (184)
224 2qor_A Guanylate kinase; phosp 97.5 3E-05 1E-09 66.8 2.7 28 101-128 8-35 (204)
225 2if2_A Dephospho-COA kinase; a 97.5 3.2E-05 1.1E-09 66.2 2.6 22 107-128 3-24 (204)
226 3auy_A DNA double-strand break 97.5 9.5E-05 3.3E-09 69.9 6.1 44 78-126 3-46 (371)
227 2qag_A Septin-2, protein NEDD5 97.5 7.8E-06 2.7E-10 77.3 -2.1 45 76-128 16-60 (361)
228 2gj8_A MNME, tRNA modification 97.5 5E-05 1.7E-09 63.4 3.1 26 103-128 2-27 (172)
229 2wji_A Ferrous iron transport 97.5 0.00014 4.7E-09 60.0 5.6 22 107-128 5-26 (165)
230 2wjg_A FEOB, ferrous iron tran 97.4 9.4E-05 3.2E-09 61.9 4.1 22 107-128 9-30 (188)
231 1j8m_F SRP54, signal recogniti 97.4 1E-05 3.5E-10 74.5 -2.4 60 80-146 77-137 (297)
232 2yvu_A Probable adenylyl-sulfa 97.4 3.7E-05 1.3E-09 65.0 1.3 35 102-138 10-44 (186)
233 1l8q_A Chromosomal replication 97.4 0.00027 9.3E-09 65.0 7.2 43 240-282 97-140 (324)
234 3t61_A Gluconokinase; PSI-biol 97.3 9E-05 3.1E-09 63.4 2.6 24 105-128 18-41 (202)
235 1ega_A Protein (GTP-binding pr 97.3 7E-05 2.4E-09 68.8 1.9 57 224-287 101-163 (301)
236 3cm0_A Adenylate kinase; ATP-b 97.3 0.00011 3.8E-09 61.7 2.8 25 103-127 2-26 (186)
237 2ga8_A Hypothetical 39.9 kDa p 97.2 2.7E-05 9.3E-10 73.2 -1.5 36 93-128 10-47 (359)
238 3lxw_A GTPase IMAP family memb 97.2 0.0006 2.1E-08 60.6 7.3 58 227-285 88-151 (247)
239 1q3t_A Cytidylate kinase; nucl 97.2 0.00016 5.3E-09 63.7 3.2 26 102-127 13-38 (236)
240 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00016 5.4E-09 69.1 3.5 42 101-142 18-68 (396)
241 1sxj_C Activator 1 40 kDa subu 97.2 3.1E-05 1E-09 72.1 -1.9 37 92-128 31-69 (340)
242 2zej_A Dardarin, leucine-rich 97.1 0.00023 7.8E-09 59.7 3.3 22 107-128 4-25 (184)
243 3kb2_A SPBC2 prophage-derived 97.1 0.00024 8.1E-09 58.6 3.3 22 107-128 3-24 (173)
244 1qhx_A CPT, protein (chloramph 97.1 0.00027 9.1E-09 58.9 3.6 24 105-128 3-26 (178)
245 1lv7_A FTSH; alpha/beta domain 97.1 0.00015 5.1E-09 64.5 1.8 32 95-128 37-68 (257)
246 1np6_A Molybdopterin-guanine d 97.1 0.00025 8.5E-09 60.0 3.0 39 106-144 7-46 (174)
247 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00021 7E-09 67.9 2.1 47 241-287 262-311 (392)
248 1kht_A Adenylate kinase; phosp 97.0 0.00037 1.3E-08 58.4 3.5 23 105-127 3-25 (192)
249 3lw7_A Adenylate kinase relate 97.0 0.00039 1.3E-08 57.1 3.1 19 107-125 3-21 (179)
250 1xp8_A RECA protein, recombina 97.0 0.0032 1.1E-07 59.4 9.8 27 101-127 70-96 (366)
251 2ze6_A Isopentenyl transferase 96.9 0.00033 1.1E-08 62.6 2.7 22 107-128 3-24 (253)
252 2rhm_A Putative kinase; P-loop 96.9 0.00036 1.2E-08 58.7 2.7 25 103-127 3-27 (193)
253 3r20_A Cytidylate kinase; stru 96.9 0.00044 1.5E-08 61.3 3.2 23 105-127 9-31 (233)
254 1vht_A Dephospho-COA kinase; s 96.9 0.00046 1.6E-08 59.7 3.3 25 104-128 3-27 (218)
255 2jaq_A Deoxyguanosine kinase; 96.9 0.0005 1.7E-08 58.2 3.2 22 107-128 2-23 (205)
256 1ex7_A Guanylate kinase; subst 96.9 0.00047 1.6E-08 58.9 3.0 20 108-127 4-23 (186)
257 1via_A Shikimate kinase; struc 96.9 0.00044 1.5E-08 57.6 2.6 22 107-128 6-27 (175)
258 3trf_A Shikimate kinase, SK; a 96.9 0.0006 2.1E-08 57.1 3.5 24 104-127 4-27 (185)
259 3iij_A Coilin-interacting nucl 96.8 0.00054 1.9E-08 57.3 3.0 25 103-127 9-33 (180)
260 2p5t_B PEZT; postsegregational 96.8 0.00037 1.3E-08 62.1 2.0 41 101-145 28-68 (253)
261 1gtv_A TMK, thymidylate kinase 96.8 0.00031 1E-08 60.3 1.4 22 107-128 2-23 (214)
262 3ihw_A Centg3; RAS, centaurin, 96.8 0.0013 4.4E-08 55.2 5.3 38 107-144 22-66 (184)
263 1ly1_A Polynucleotide kinase; 96.8 0.00062 2.1E-08 56.5 3.2 22 106-127 3-24 (181)
264 2v54_A DTMP kinase, thymidylat 96.8 0.00073 2.5E-08 57.4 3.6 25 104-128 3-27 (204)
265 1uf9_A TT1252 protein; P-loop, 96.8 0.00065 2.2E-08 57.6 3.1 23 105-127 8-30 (203)
266 2wwf_A Thymidilate kinase, put 96.7 0.00082 2.8E-08 57.5 3.4 25 103-127 8-32 (212)
267 2plr_A DTMP kinase, probable t 96.7 0.00079 2.7E-08 57.4 3.3 25 104-128 3-27 (213)
268 3k53_A Ferrous iron transport 96.7 0.0007 2.4E-08 60.8 3.0 40 250-289 144-184 (271)
269 1jal_A YCHF protein; nucleotid 96.7 0.0012 4E-08 62.4 4.7 38 105-142 2-48 (363)
270 2c95_A Adenylate kinase 1; tra 96.7 0.00085 2.9E-08 56.5 3.3 25 103-127 7-31 (196)
271 1gvn_B Zeta; postsegregational 96.7 0.00065 2.2E-08 61.9 2.7 35 104-142 32-66 (287)
272 1tev_A UMP-CMP kinase; ploop, 96.7 0.00086 3E-08 56.2 3.2 23 105-127 3-25 (196)
273 1nn5_A Similar to deoxythymidy 96.7 0.00093 3.2E-08 57.1 3.4 26 102-127 6-31 (215)
274 1nks_A Adenylate kinase; therm 96.6 0.00095 3.2E-08 55.9 3.0 21 107-127 3-23 (194)
275 3ake_A Cytidylate kinase; CMP 96.6 0.0009 3.1E-08 56.9 2.9 22 107-128 4-25 (208)
276 3cmw_A Protein RECA, recombina 96.6 0.0086 3E-07 66.5 11.1 28 101-128 728-755 (1706)
277 1xjc_A MOBB protein homolog; s 96.6 0.00097 3.3E-08 56.1 2.9 23 106-128 5-27 (169)
278 2z0h_A DTMP kinase, thymidylat 96.6 0.0012 4.1E-08 55.6 3.2 21 107-127 2-22 (197)
279 2vli_A Antibiotic resistance p 96.5 0.00087 3E-08 55.9 2.3 24 104-127 4-27 (183)
280 3llm_A ATP-dependent RNA helic 96.5 0.0008 2.7E-08 59.0 2.1 60 225-286 162-223 (235)
281 3bgw_A DNAB-like replicative h 96.5 0.013 4.5E-07 56.6 10.7 35 93-127 185-219 (444)
282 2ged_A SR-beta, signal recogni 96.5 0.0012 4.2E-08 55.2 2.9 23 106-128 49-71 (193)
283 2bwj_A Adenylate kinase 5; pho 96.5 0.0014 4.7E-08 55.3 3.2 25 103-127 10-34 (199)
284 3dm5_A SRP54, signal recogniti 96.5 0.021 7.3E-07 55.1 11.8 25 104-128 99-123 (443)
285 3q72_A GTP-binding protein RAD 96.5 0.0014 4.7E-08 53.2 2.9 22 107-128 4-25 (166)
286 1fzq_A ADP-ribosylation factor 96.4 0.0014 4.7E-08 54.7 2.9 22 107-128 18-39 (181)
287 3fb4_A Adenylate kinase; psych 96.4 0.0015 5.3E-08 56.1 3.2 21 107-127 2-22 (216)
288 1aky_A Adenylate kinase; ATP:A 96.4 0.0017 6E-08 56.1 3.6 24 104-127 3-26 (220)
289 3b1v_A Ferrous iron uptake tra 96.4 0.0016 5.4E-08 58.9 3.3 22 107-128 5-26 (272)
290 2nzj_A GTP-binding protein REM 96.4 0.0018 6E-08 53.0 3.3 22 107-128 6-27 (175)
291 1zd8_A GTP:AMP phosphotransfer 96.4 0.0017 5.7E-08 56.6 3.3 25 103-127 5-29 (227)
292 2pbr_A DTMP kinase, thymidylat 96.4 0.0017 5.8E-08 54.4 3.3 21 107-127 2-22 (195)
293 1z2a_A RAS-related protein RAB 96.4 0.0015 5.3E-08 52.9 2.9 22 107-128 7-28 (168)
294 2erx_A GTP-binding protein DI- 96.4 0.0018 6.3E-08 52.5 3.3 22 107-128 5-26 (172)
295 3q85_A GTP-binding protein REM 96.4 0.0019 6.5E-08 52.5 3.4 22 107-128 4-25 (169)
296 1e6c_A Shikimate kinase; phosp 96.4 0.0015 5.2E-08 53.9 2.6 22 106-127 3-24 (173)
297 2dyk_A GTP-binding protein; GT 96.4 0.0017 5.7E-08 52.3 2.9 22 107-128 3-24 (161)
298 2pt5_A Shikimate kinase, SK; a 96.4 0.0019 6.6E-08 53.0 3.2 21 107-127 2-22 (168)
299 3tw8_B RAS-related protein RAB 96.4 0.0019 6.4E-08 53.1 3.1 22 107-128 11-32 (181)
300 3dl0_A Adenylate kinase; phosp 96.3 0.0019 6.4E-08 55.6 3.2 21 107-127 2-22 (216)
301 2ce2_X GTPase HRAS; signaling 96.3 0.0016 5.5E-08 52.4 2.7 22 107-128 5-26 (166)
302 1svi_A GTP-binding protein YSX 96.3 0.0018 6.1E-08 54.2 3.0 23 106-128 24-46 (195)
303 1zuh_A Shikimate kinase; alpha 96.3 0.0021 7E-08 53.0 3.3 22 106-127 8-29 (168)
304 1ko7_A HPR kinase/phosphatase; 96.3 0.0025 8.4E-08 58.9 4.1 35 92-127 132-166 (314)
305 2cdn_A Adenylate kinase; phosp 96.3 0.0022 7.6E-08 54.5 3.6 23 105-127 20-42 (201)
306 2lkc_A Translation initiation 96.3 0.0024 8.1E-08 52.4 3.7 25 104-128 7-31 (178)
307 2iyv_A Shikimate kinase, SK; t 96.3 0.0017 5.7E-08 54.4 2.7 22 106-127 3-24 (184)
308 3pqc_A Probable GTP-binding pr 96.3 0.0019 6.5E-08 53.8 3.0 22 107-128 25-46 (195)
309 1kao_A RAP2A; GTP-binding prot 96.3 0.0019 6.3E-08 52.1 2.9 21 107-127 5-25 (167)
310 1qf9_A UMP/CMP kinase, protein 96.3 0.0019 6.5E-08 54.0 3.0 23 105-127 6-28 (194)
311 1u8z_A RAS-related protein RAL 96.3 0.0019 6.5E-08 52.1 2.9 22 107-128 6-27 (168)
312 1moz_A ARL1, ADP-ribosylation 96.3 0.0015 5.1E-08 54.0 2.2 23 105-127 18-40 (183)
313 1z0j_A RAB-22, RAS-related pro 96.3 0.002 6.7E-08 52.3 2.9 22 107-128 8-29 (170)
314 1zak_A Adenylate kinase; ATP:A 96.3 0.0018 6.1E-08 56.1 2.7 24 104-127 4-27 (222)
315 1z08_A RAS-related protein RAB 96.3 0.002 6.8E-08 52.4 2.9 22 107-128 8-29 (170)
316 1ukz_A Uridylate kinase; trans 96.3 0.0021 7E-08 54.7 3.1 23 105-127 15-37 (203)
317 1uj2_A Uridine-cytidine kinase 96.3 0.0021 7.2E-08 57.0 3.2 22 106-127 23-44 (252)
318 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0022 7.5E-08 57.3 3.3 24 104-127 3-26 (260)
319 1ky3_A GTP-binding protein YPT 96.3 0.002 6.9E-08 52.9 2.9 22 107-128 10-31 (182)
320 2cxx_A Probable GTP-binding pr 96.3 0.0022 7.4E-08 53.3 3.0 22 107-128 3-24 (190)
321 2grj_A Dephospho-COA kinase; T 96.3 0.0023 7.8E-08 54.8 3.2 22 106-127 13-34 (192)
322 1c1y_A RAS-related protein RAP 96.3 0.0021 7.1E-08 52.0 2.9 21 107-127 5-25 (167)
323 1ek0_A Protein (GTP-binding pr 96.3 0.0021 7.1E-08 52.1 2.9 22 107-128 5-26 (170)
324 1g16_A RAS-related protein SEC 96.2 0.002 6.7E-08 52.3 2.7 22 107-128 5-26 (170)
325 2fn4_A P23, RAS-related protei 96.2 0.002 6.9E-08 52.8 2.6 22 107-128 11-32 (181)
326 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0022 7.6E-08 52.5 2.9 22 107-128 9-30 (177)
327 3bos_A Putative DNA replicatio 96.2 0.0029 9.9E-08 54.6 3.7 25 104-128 51-75 (242)
328 1r2q_A RAS-related protein RAB 96.1 0.0026 8.8E-08 51.5 2.9 21 107-127 8-28 (170)
329 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0025 8.7E-08 52.7 2.9 22 107-128 6-27 (189)
330 3clv_A RAB5 protein, putative; 96.1 0.0025 8.7E-08 53.1 2.9 22 107-128 9-30 (208)
331 1upt_A ARL1, ADP-ribosylation 96.1 0.0026 9E-08 51.7 2.9 21 107-127 9-29 (171)
332 3cbq_A GTP-binding protein REM 96.1 0.0025 8.5E-08 54.0 2.8 22 107-128 25-46 (195)
333 2oil_A CATX-8, RAS-related pro 96.1 0.0026 8.9E-08 53.2 2.9 22 107-128 27-48 (193)
334 2hxs_A RAB-26, RAS-related pro 96.1 0.003 1E-07 51.8 3.2 22 107-128 8-29 (178)
335 1a7j_A Phosphoribulokinase; tr 96.1 0.0013 4.4E-08 60.1 1.0 24 104-127 4-27 (290)
336 3bc1_A RAS-related protein RAB 96.1 0.0027 9.1E-08 52.7 2.9 22 107-128 13-34 (195)
337 1wf3_A GTP-binding protein; GT 96.1 0.0029 9.9E-08 58.0 3.3 22 107-128 9-30 (301)
338 3t1o_A Gliding protein MGLA; G 96.1 0.0027 9.4E-08 52.8 2.9 22 107-128 16-37 (198)
339 3t5d_A Septin-7; GTP-binding p 96.1 0.0026 9E-08 57.1 2.9 22 107-128 10-31 (274)
340 1r8s_A ADP-ribosylation factor 96.1 0.0028 9.7E-08 51.2 2.9 21 107-127 2-22 (164)
341 2xb4_A Adenylate kinase; ATP-b 96.1 0.0031 1.1E-07 54.9 3.2 21 107-127 2-22 (223)
342 2f6r_A COA synthase, bifunctio 96.1 0.0028 9.6E-08 57.4 3.0 23 105-127 75-97 (281)
343 1z0f_A RAB14, member RAS oncog 96.1 0.003 1E-07 51.7 2.9 22 107-128 17-38 (179)
344 3cmw_A Protein RECA, recombina 96.1 0.096 3.3E-06 58.3 15.5 35 93-127 369-405 (1706)
345 3con_A GTPase NRAS; structural 96.1 0.003 1E-07 52.7 2.9 22 107-128 23-44 (190)
346 2y8e_A RAB-protein 6, GH09086P 96.0 0.0028 9.5E-08 51.9 2.7 21 107-127 16-36 (179)
347 3tlx_A Adenylate kinase 2; str 96.0 0.0032 1.1E-07 55.7 3.2 24 104-127 28-51 (243)
348 2a9k_A RAS-related protein RAL 96.0 0.003 1E-07 52.1 2.9 22 107-128 20-41 (187)
349 4fcw_A Chaperone protein CLPB; 96.0 0.0018 6.3E-08 58.6 1.7 23 106-128 48-70 (311)
350 2g6b_A RAS-related protein RAB 96.0 0.0031 1E-07 51.8 2.9 22 107-128 12-33 (180)
351 3iby_A Ferrous iron transport 96.0 0.0031 1.1E-07 56.3 3.1 22 107-128 3-24 (256)
352 3euj_A Chromosome partition pr 96.0 0.016 5.5E-07 56.6 8.3 68 223-297 379-463 (483)
353 4dhe_A Probable GTP-binding pr 96.0 0.0021 7.3E-08 55.1 1.8 23 106-128 30-52 (223)
354 1ksh_A ARF-like protein 2; sma 96.0 0.0037 1.3E-07 51.9 3.3 25 104-128 17-41 (186)
355 3iev_A GTP-binding protein ERA 96.0 0.0036 1.2E-07 57.4 3.3 22 107-128 12-33 (308)
356 1nrj_B SR-beta, signal recogni 96.0 0.0033 1.1E-07 53.8 2.9 22 107-128 14-35 (218)
357 2xtp_A GTPase IMAP family memb 96.0 0.0035 1.2E-07 55.6 3.1 22 107-128 24-45 (260)
358 2efe_B Small GTP-binding prote 96.0 0.0034 1.2E-07 51.6 2.9 22 107-128 14-35 (181)
359 2bme_A RAB4A, RAS-related prot 95.9 0.0032 1.1E-07 52.1 2.7 22 107-128 12-33 (186)
360 2w58_A DNAI, primosome compone 95.9 0.0044 1.5E-07 52.6 3.5 23 106-128 55-77 (202)
361 2dby_A GTP-binding protein; GD 95.9 0.0029 9.9E-08 59.8 2.6 22 107-128 3-24 (368)
362 1vg8_A RAS-related protein RAB 95.9 0.0035 1.2E-07 52.9 2.9 22 107-128 10-31 (207)
363 2bov_A RAla, RAS-related prote 95.9 0.0036 1.2E-07 52.7 2.9 22 107-128 16-37 (206)
364 1e4v_A Adenylate kinase; trans 95.9 0.0038 1.3E-07 53.7 3.0 21 107-127 2-22 (214)
365 3kkq_A RAS-related protein M-R 95.9 0.0037 1.3E-07 51.6 2.9 22 107-128 20-41 (183)
366 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0034 1.2E-07 52.2 2.7 22 107-128 9-30 (184)
367 3tkl_A RAS-related protein RAB 95.9 0.0037 1.3E-07 52.2 2.9 22 107-128 18-39 (196)
368 1jbk_A CLPB protein; beta barr 95.9 0.0047 1.6E-07 50.9 3.5 25 104-128 42-66 (195)
369 2h57_A ADP-ribosylation factor 95.9 0.0034 1.2E-07 52.5 2.6 22 107-128 23-44 (190)
370 2il1_A RAB12; G-protein, GDP, 95.9 0.0041 1.4E-07 52.2 3.1 22 107-128 28-49 (192)
371 2gf9_A RAS-related protein RAB 95.9 0.0038 1.3E-07 52.1 2.9 22 107-128 24-45 (189)
372 2gf0_A GTP-binding protein DI- 95.9 0.0036 1.2E-07 52.4 2.6 21 107-127 10-30 (199)
373 1zbd_A Rabphilin-3A; G protein 95.9 0.0047 1.6E-07 52.1 3.3 22 107-128 10-31 (203)
374 2cjw_A GTP-binding protein GEM 95.9 0.004 1.4E-07 52.6 2.9 21 107-127 8-28 (192)
375 3d3q_A TRNA delta(2)-isopenten 95.9 0.0042 1.4E-07 58.0 3.2 23 106-128 8-30 (340)
376 4bas_A ADP-ribosylation factor 95.9 0.0045 1.5E-07 51.8 3.2 22 107-128 19-40 (199)
377 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.0041 1.4E-07 51.2 2.9 21 107-127 7-27 (186)
378 3a1s_A Iron(II) transport prot 95.8 0.0045 1.5E-07 55.3 3.3 22 107-128 7-28 (258)
379 2qu8_A Putative nucleolar GTP- 95.8 0.0046 1.6E-07 53.6 3.3 22 107-128 31-52 (228)
380 2fg5_A RAB-22B, RAS-related pr 95.8 0.0038 1.3E-07 52.4 2.6 22 107-128 25-46 (192)
381 3be4_A Adenylate kinase; malar 95.8 0.0046 1.6E-07 53.4 3.2 23 105-127 5-27 (217)
382 1zj6_A ADP-ribosylation factor 95.8 0.0046 1.6E-07 51.5 3.1 22 106-127 17-38 (187)
383 1ltq_A Polynucleotide kinase; 95.8 0.0044 1.5E-07 56.0 3.2 22 106-127 3-24 (301)
384 3i8s_A Ferrous iron transport 95.8 0.0043 1.5E-07 55.9 3.1 22 107-128 5-26 (274)
385 3oes_A GTPase rhebl1; small GT 95.8 0.0039 1.3E-07 52.7 2.7 22 107-128 26-47 (201)
386 2o52_A RAS-related protein RAB 95.8 0.0046 1.6E-07 52.3 3.1 22 107-128 27-48 (200)
387 3t5g_A GTP-binding protein RHE 95.8 0.0041 1.4E-07 51.3 2.7 21 107-127 8-28 (181)
388 2wsm_A Hydrogenase expression/ 95.8 0.004 1.4E-07 53.4 2.6 23 106-128 31-53 (221)
389 1z06_A RAS-related protein RAB 95.8 0.0044 1.5E-07 51.7 2.9 21 107-127 22-42 (189)
390 2h17_A ADP-ribosylation factor 95.8 0.0043 1.5E-07 51.5 2.7 22 107-128 23-44 (181)
391 2a5j_A RAS-related protein RAB 95.8 0.0045 1.5E-07 51.8 2.9 22 107-128 23-44 (191)
392 3dz8_A RAS-related protein RAB 95.8 0.0042 1.4E-07 52.0 2.7 22 107-128 25-46 (191)
393 3zvl_A Bifunctional polynucleo 95.8 0.005 1.7E-07 59.0 3.4 26 102-127 255-280 (416)
394 3v9p_A DTMP kinase, thymidylat 95.8 0.004 1.4E-07 54.8 2.5 27 102-128 22-48 (227)
395 3bwd_D RAC-like GTP-binding pr 95.8 0.0048 1.6E-07 50.7 2.9 22 106-127 9-30 (182)
396 3reg_A RHO-like small GTPase; 95.7 0.0047 1.6E-07 51.7 2.9 22 107-128 25-46 (194)
397 1jwy_B Dynamin A GTPase domain 95.7 0.0047 1.6E-07 56.2 3.0 22 107-128 26-47 (315)
398 2ew1_A RAS-related protein RAB 95.7 0.0043 1.5E-07 52.9 2.7 21 107-127 28-48 (201)
399 2qmh_A HPR kinase/phosphorylas 95.7 0.007 2.4E-07 52.3 3.9 35 92-127 22-56 (205)
400 4edh_A DTMP kinase, thymidylat 95.7 0.0056 1.9E-07 53.2 3.3 26 103-128 4-29 (213)
401 1zd9_A ADP-ribosylation factor 95.7 0.005 1.7E-07 51.5 2.9 21 107-127 24-44 (188)
402 3lv8_A DTMP kinase, thymidylat 95.7 0.0058 2E-07 54.1 3.4 25 104-128 26-50 (236)
403 3llu_A RAS-related GTP-binding 95.7 0.0056 1.9E-07 51.6 3.1 22 107-128 22-43 (196)
404 1x3s_A RAS-related protein RAB 95.7 0.0051 1.8E-07 51.2 2.9 22 107-128 17-38 (195)
405 2bcg_Y Protein YP2, GTP-bindin 95.7 0.0047 1.6E-07 52.3 2.7 22 107-128 10-31 (206)
406 1ak2_A Adenylate kinase isoenz 95.7 0.0063 2.1E-07 53.1 3.6 24 104-127 15-38 (233)
407 2q3h_A RAS homolog gene family 95.7 0.0061 2.1E-07 51.3 3.4 22 107-128 22-43 (201)
408 2f7s_A C25KG, RAS-related prot 95.7 0.006 2.1E-07 52.0 3.3 22 107-128 27-48 (217)
409 3a8t_A Adenylate isopentenyltr 95.7 0.0056 1.9E-07 57.1 3.3 25 104-128 39-63 (339)
410 2p5s_A RAS and EF-hand domain 95.7 0.0053 1.8E-07 51.8 2.9 22 107-128 30-51 (199)
411 2iwr_A Centaurin gamma 1; ANK 95.7 0.0041 1.4E-07 51.1 2.2 22 107-128 9-30 (178)
412 2atv_A RERG, RAS-like estrogen 95.7 0.0053 1.8E-07 51.6 2.9 22 107-128 30-51 (196)
413 3cph_A RAS-related protein SEC 95.7 0.0054 1.8E-07 52.0 2.9 23 106-128 21-43 (213)
414 2j1l_A RHO-related GTP-binding 95.6 0.0058 2E-07 52.3 3.1 21 107-127 36-56 (214)
415 3exa_A TRNA delta(2)-isopenten 95.6 0.006 2.1E-07 56.3 3.3 24 105-128 3-26 (322)
416 3def_A T7I23.11 protein; chlor 95.6 0.0059 2E-07 54.4 3.1 22 107-128 38-59 (262)
417 2h92_A Cytidylate kinase; ross 95.6 0.0057 2E-07 52.5 2.9 24 105-128 3-26 (219)
418 2fv8_A H6, RHO-related GTP-bin 95.6 0.0053 1.8E-07 52.2 2.6 22 107-128 27-48 (207)
419 4djt_A GTP-binding nuclear pro 95.6 0.0039 1.3E-07 53.3 1.8 22 107-128 13-34 (218)
420 3cmu_A Protein RECA, recombina 95.6 0.06 2E-06 60.8 11.6 26 102-127 380-405 (2050)
421 1gwn_A RHO-related GTP-binding 95.6 0.0054 1.8E-07 52.4 2.7 22 107-128 30-51 (205)
422 4tmk_A Protein (thymidylate ki 95.6 0.0069 2.4E-07 52.7 3.4 25 104-128 2-26 (213)
423 3crm_A TRNA delta(2)-isopenten 95.6 0.0063 2.1E-07 56.4 3.2 23 106-128 6-28 (323)
424 2aka_B Dynamin-1; fusion prote 95.6 0.0059 2E-07 54.9 3.0 22 107-128 28-49 (299)
425 1h65_A Chloroplast outer envel 95.6 0.0062 2.1E-07 54.5 3.1 22 107-128 41-62 (270)
426 3c5c_A RAS-like protein 12; GD 95.6 0.006 2.1E-07 51.0 2.9 21 107-127 23-43 (187)
427 1sky_E F1-ATPase, F1-ATP synth 95.6 0.0068 2.3E-07 58.9 3.6 36 92-128 139-174 (473)
428 2fh5_B SR-beta, signal recogni 95.6 0.006 2.1E-07 51.9 2.9 22 107-128 9-30 (214)
429 2b6h_A ADP-ribosylation factor 95.6 0.0062 2.1E-07 51.2 2.9 22 106-127 30-51 (192)
430 2p65_A Hypothetical protein PF 95.6 0.006 2E-07 50.2 2.8 25 104-128 42-66 (187)
431 2fu5_C RAS-related protein RAB 95.6 0.0043 1.5E-07 51.3 1.8 22 107-128 10-31 (183)
432 2i1q_A DNA repair and recombin 95.6 0.0071 2.4E-07 55.5 3.5 27 101-127 94-120 (322)
433 1njg_A DNA polymerase III subu 95.5 0.0079 2.7E-07 51.3 3.5 43 240-284 125-167 (250)
434 2g3y_A GTP-binding protein GEM 95.5 0.0077 2.6E-07 52.1 3.3 22 107-128 39-60 (211)
435 2gco_A H9, RHO-related GTP-bin 95.5 0.0062 2.1E-07 51.5 2.7 21 107-127 27-47 (201)
436 3h4m_A Proteasome-activating n 95.5 0.0073 2.5E-07 54.0 3.2 26 103-128 49-74 (285)
437 2ocp_A DGK, deoxyguanosine kin 95.5 0.0071 2.4E-07 53.0 3.1 24 105-128 2-25 (241)
438 1p5z_B DCK, deoxycytidine kina 95.4 0.0059 2E-07 54.3 2.5 26 103-128 22-47 (263)
439 3cnl_A YLQF, putative uncharac 95.4 0.0073 2.5E-07 54.2 3.1 23 106-128 100-122 (262)
440 3tmk_A Thymidylate kinase; pho 95.4 0.0082 2.8E-07 52.4 3.3 26 103-128 3-28 (216)
441 3ld9_A DTMP kinase, thymidylat 95.4 0.0084 2.9E-07 52.6 3.3 26 103-128 19-44 (223)
442 2atx_A Small GTP binding prote 95.4 0.007 2.4E-07 50.6 2.6 22 107-128 20-41 (194)
443 2hf9_A Probable hydrogenase ni 95.4 0.0072 2.5E-07 52.0 2.7 21 107-127 40-60 (226)
444 2x77_A ADP-ribosylation factor 95.3 0.0063 2.1E-07 50.6 2.2 21 107-127 24-44 (189)
445 4dcu_A GTP-binding protein ENG 95.3 0.0068 2.3E-07 58.6 2.7 21 107-127 25-45 (456)
446 1sxj_D Activator 1 41 kDa subu 95.3 0.0022 7.6E-08 59.0 -0.9 42 241-284 133-174 (353)
447 2zts_A Putative uncharacterize 95.3 0.012 4.2E-07 51.0 4.0 60 238-298 132-206 (251)
448 3tqf_A HPR(Ser) kinase; transf 95.2 0.015 5.1E-07 49.1 4.1 35 92-127 4-38 (181)
449 3foz_A TRNA delta(2)-isopenten 95.2 0.01 3.4E-07 54.7 3.2 24 105-128 10-33 (316)
450 3umf_A Adenylate kinase; rossm 95.2 0.01 3.4E-07 51.9 3.1 26 102-127 26-51 (217)
451 2hup_A RAS-related protein RAB 95.2 0.0087 3E-07 50.7 2.6 22 107-128 31-52 (201)
452 2yc2_C IFT27, small RAB-relate 95.2 0.0043 1.5E-07 52.2 0.6 22 107-128 22-43 (208)
453 4gzl_A RAS-related C3 botulinu 95.2 0.009 3.1E-07 50.7 2.7 21 107-127 32-52 (204)
454 3cpj_B GTP-binding protein YPT 95.1 0.0099 3.4E-07 51.1 2.9 22 107-128 15-36 (223)
455 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.011 3.8E-07 51.9 3.2 24 105-128 39-62 (262)
456 3q3j_B RHO-related GTP-binding 95.1 0.011 3.6E-07 50.8 2.9 22 107-128 29-50 (214)
457 1ypw_A Transitional endoplasmi 95.1 0.003 1E-07 65.6 -0.8 44 98-145 504-547 (806)
458 3n70_A Transport activator; si 95.0 0.012 4E-07 47.5 2.8 39 241-281 76-114 (145)
459 2j0v_A RAC-like GTP-binding pr 95.0 0.011 3.8E-07 50.1 2.7 21 107-127 11-31 (212)
460 2orw_A Thymidine kinase; TMTK, 94.9 0.016 5.3E-07 49.0 3.4 39 241-284 76-114 (184)
461 1lw7_A Transcriptional regulat 94.9 0.013 4.5E-07 54.8 3.2 29 223-251 296-329 (365)
462 3sr0_A Adenylate kinase; phosp 94.9 0.015 5.1E-07 50.2 3.2 21 107-127 2-22 (206)
463 3cmu_A Protein RECA, recombina 94.8 0.15 5E-06 57.7 11.6 36 92-127 1066-1103(2050)
464 4hlc_A DTMP kinase, thymidylat 94.7 0.017 5.8E-07 49.8 3.2 24 105-128 2-25 (205)
465 3eph_A TRNA isopentenyltransfe 94.7 0.015 5.2E-07 55.4 3.0 22 106-127 3-24 (409)
466 2chg_A Replication factor C sm 94.7 0.016 5.6E-07 48.7 3.0 42 241-284 102-143 (226)
467 3l0i_B RAS-related protein RAB 94.6 0.0046 1.6E-07 52.1 -0.8 22 107-128 35-56 (199)
468 3gj0_A GTP-binding nuclear pro 94.5 0.013 4.6E-07 50.1 2.1 40 231-270 166-210 (221)
469 2hjg_A GTP-binding protein ENG 94.5 0.016 5.5E-07 55.7 2.8 22 107-128 5-26 (436)
470 2v1u_A Cell division control p 94.5 0.014 4.9E-07 53.9 2.4 26 103-128 42-67 (387)
471 1puj_A YLQF, conserved hypothe 94.5 0.019 6.6E-07 51.9 3.2 23 106-128 121-143 (282)
472 2x2e_A Dynamin-1; nitration, h 94.5 0.015 5.2E-07 54.1 2.5 22 107-128 33-54 (353)
473 3syl_A Protein CBBX; photosynt 94.5 0.021 7.1E-07 51.5 3.3 25 104-128 66-90 (309)
474 1wxq_A GTP-binding protein; st 94.5 0.019 6.3E-07 54.7 3.1 22 107-128 2-23 (397)
475 2r62_A Cell division protease 94.4 0.008 2.7E-07 53.3 0.4 25 101-127 42-66 (268)
476 3th5_A RAS-related C3 botulinu 93.4 0.007 2.4E-07 51.1 0.0 21 107-127 32-52 (204)
477 3p32_A Probable GTPase RV1496/ 94.4 0.019 6.6E-07 53.6 2.9 24 105-128 79-102 (355)
478 3r7w_A Gtpase1, GTP-binding pr 94.3 0.021 7.2E-07 52.1 2.9 23 106-128 4-26 (307)
479 3gmt_A Adenylate kinase; ssgci 94.2 0.025 8.7E-07 49.7 3.2 22 106-127 9-30 (230)
480 3ec1_A YQEH GTPase; atnos1, at 94.2 0.02 6.7E-07 54.0 2.6 25 104-128 161-185 (369)
481 1d2n_A N-ethylmaleimide-sensit 94.2 0.024 8.1E-07 50.5 3.0 24 104-127 63-86 (272)
482 2qgz_A Helicase loader, putati 94.1 0.03 1E-06 51.3 3.6 24 105-128 152-175 (308)
483 2v3c_C SRP54, signal recogniti 94.1 0.015 5E-07 56.1 1.6 23 106-128 100-122 (432)
484 1lnz_A SPO0B-associated GTP-bi 94.1 0.031 1.1E-06 52.1 3.7 32 97-128 150-181 (342)
485 2qpt_A EH domain-containing pr 94.1 0.023 8E-07 56.4 3.0 23 106-128 66-88 (550)
486 3co5_A Putative two-component 94.1 0.016 5.6E-07 46.5 1.6 40 241-281 75-114 (143)
487 3h2y_A GTPase family protein; 94.0 0.021 7.2E-07 53.7 2.3 25 104-128 159-183 (368)
488 2vhj_A Ntpase P4, P4; non- hyd 94.0 0.031 1.1E-06 51.8 3.4 27 101-127 119-145 (331)
489 1ofh_A ATP-dependent HSL prote 94.0 0.027 9.2E-07 50.6 3.0 24 105-128 50-73 (310)
490 4a9a_A Ribosome-interacting GT 93.9 0.039 1.3E-06 52.1 4.0 38 107-144 74-120 (376)
491 3hws_A ATP-dependent CLP prote 93.9 0.028 9.4E-07 52.4 3.0 24 105-128 51-74 (363)
492 1x6v_B Bifunctional 3'-phospho 93.9 0.029 1E-06 56.5 3.3 24 104-127 51-74 (630)
493 3uk6_A RUVB-like 2; hexameric 93.9 0.032 1.1E-06 51.6 3.4 25 104-128 69-93 (368)
494 1m8p_A Sulfate adenylyltransfe 93.9 0.028 9.7E-07 56.0 3.1 25 104-128 395-419 (573)
495 2qby_B CDC6 homolog 3, cell di 93.8 0.033 1.1E-06 51.7 3.3 24 105-128 45-68 (384)
496 1xwi_A SKD1 protein; VPS4B, AA 93.8 0.036 1.2E-06 50.9 3.6 25 104-128 44-68 (322)
497 3sjy_A Translation initiation 93.8 0.033 1.1E-06 52.8 3.4 22 107-128 10-31 (403)
498 1g8f_A Sulfate adenylyltransfe 93.8 0.026 9E-07 55.4 2.6 26 103-128 393-418 (511)
499 1f5n_A Interferon-induced guan 93.8 0.029 9.9E-07 56.2 2.9 23 106-128 39-61 (592)
500 3pvs_A Replication-associated 93.8 0.018 6.3E-07 55.6 1.5 29 100-128 43-73 (447)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.7e-56 Score=421.35 Aligned_cols=226 Identities=20% Similarity=0.291 Sum_probs=196.0
Q ss_pred CCCCcEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH
Q 020477 73 KSQPLLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 73 ~~~~~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 150 (325)
...++|+++||+++|+++ ...+|+||||+|++||++||+||||||||||+|+|+|+ .+|++|+|.++|+++..++.
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL--~~p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECSSCCH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC--CCCCceEEEECCEECCcCCH
Confidence 345799999999999642 24699999999999999999999999999999999998 78999999999999988876
Q ss_pred HHH--hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020477 151 EER--SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE 228 (325)
Q Consensus 151 ~~~--~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq 228 (325)
..+ .+..++|+||++.+++.+|+.+++.+.... .+ ....+..+++.++++.+++. +..++++.+ |||||
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~----~~---~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~-LSGGq 168 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL----DN---TPKDEVKRRVTELLSLVGLG-DKHDSYPSN-LSGGQ 168 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH----SC---CCHHHHHHHHHHHHHHHTCG-GGTTCCTTT-SCHHH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCc-hHhcCChhh-CCHHH
Confidence 543 235699999999999999999998776432 11 23445567788999999996 577888875 99999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||||+|||||+.+|++|||||||+|||+.+++.++++|++++++ |.|||+||||++++..+ ||+|++|++|++++.|+
T Consensus 169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~-aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI-CDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHH-CSEEEEEETTEEEECCB
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999754 89999999999999888 69999999999999998
Q ss_pred ccH
Q 020477 308 ASI 310 (325)
Q Consensus 308 ~~~ 310 (325)
++.
T Consensus 248 ~~e 250 (366)
T 3tui_C 248 VSE 250 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 2
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.6e-55 Score=402.20 Aligned_cols=245 Identities=51% Similarity=0.852 Sum_probs=198.7
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+..++|++|+|.++|+++...+...+
T Consensus 17 ~~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp ---CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred CCceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 3568999999999963 67999999999999999999999999999999999973246899999999999877665554
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
.+.+++++||++.+++.+++.+++...........+.......+...++.++++.+++..+..++.+..+|||||||||+
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 44468999999999999999998866432111001111122334445678889999995445677765349999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATV 313 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~ 313 (325)
|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++..++||++++|++|++++.|+++....
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence 99999999999999999999999999999999999976789999999999988765469999999999999999886655
Q ss_pred HHhCCee
Q 020477 314 LEEGGYK 320 (325)
Q Consensus 314 ~~~~~~~ 320 (325)
++..+|.
T Consensus 255 ~~~~~~~ 261 (267)
T 2zu0_C 255 LEEQGYG 261 (267)
T ss_dssp HHTTTCT
T ss_pred hhhcchh
Confidence 6666543
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.7e-55 Score=397.23 Aligned_cols=225 Identities=20% Similarity=0.256 Sum_probs=189.5
Q ss_pred cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH-
Q 020477 77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER- 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~- 153 (325)
+|+++||+++|+++. +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--DKPTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCceEEEECCEEcccCCHHHHH
Confidence 589999999996422 4699999999999999999999999999999999998 78999999999999988776542
Q ss_pred --hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 154 --SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 154 --~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
++..++|+||++.+++.+|+.+++....... ........+..+++.++++.+++.....++.+.+ ||||||||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~QR 153 (235)
T 3tif_A 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFK----YRGAMSGEERRKRALECLKMAELEERFANHKPNQ-LSGGQQQR 153 (235)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC----SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG-SCHHHHHH
T ss_pred HHhhccEEEEecCCccCCCCcHHHHHHHHHHhh----hccCCCHHHHHHHHHHHHHHCCCChhhhhCChhh-CCHHHHHH
Confidence 2345899999999999999999987653211 0111233445567788899999964344777764 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|+|||||+.+|++|||||||+|||+.+++.++++|++++++ |+|||+||||++.+ .+ ||+|++|++|++++.++.+.
T Consensus 154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~-~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RF-GERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TT-SSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-Hh-CCEEEEEECCEEEEEcChhh
Confidence 99999999999999999999999999999999999999765 89999999999965 55 79999999999999987654
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6e-55 Score=401.99 Aligned_cols=223 Identities=22% Similarity=0.337 Sum_probs=188.3
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH-HH
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE-ER 153 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~-~~ 153 (325)
.++|+++||+++|++ ++.+|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...... ..
T Consensus 5 ~~~l~i~~ls~~y~~-~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl--~~p~~G~I~~~G~~i~~~~~~~~~ 81 (275)
T 3gfo_A 5 DYILKVEELNYNYSD-GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--LKPSSGRILFDNKPIDYSRKGIMK 81 (275)
T ss_dssp CEEEEEEEEEEECTT-SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCCSHHHHHH
T ss_pred CcEEEEEEEEEEECC-CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCeEEEECCEECCcccccHHH
Confidence 358999999999964 34699999999999999999999999999999999998 689999999999998522111 11
Q ss_pred hhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 154 SLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 154 ~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
.+..++|+||++. .+...|+.+++.+.... .+ ....+..+++.++++.+++. ++.++.+.+ |||||||||
T Consensus 82 ~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~-LSgGqkQRv 152 (275)
T 3gfo_A 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVN----MK---LPEDEIRKRVDNALKRTGIE-HLKDKPTHC-LSFGQKKRV 152 (275)
T ss_dssp HHHSEEEECSSGGGTCCSSBHHHHHHHHHHT----SC---CCHHHHHHHHHHHHHHTTCG-GGTTSBGGG-SCHHHHHHH
T ss_pred HhCcEEEEEcCcccccccCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhcCCccc-CCHHHHHHH
Confidence 2346899999973 34468999988765321 11 23445566788899999996 677888765 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+|||||+.+|++|||||||+|||+.+++.++++|++++ ++|+|||+||||++++..+ ||+|++|++|++++.|+++.
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~-~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY-CDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGG-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999997 5589999999999999887 79999999999999998764
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.2e-54 Score=388.87 Aligned_cols=217 Identities=29% Similarity=0.310 Sum_probs=186.7
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH--
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER-- 153 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~-- 153 (325)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+....
T Consensus 3 ~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (224)
T 2pcj_A 3 EILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL--DAPTEGKVFLEGKEVDYTNEKELSL 78 (224)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS--SCCSEEEEEETTEECCSSCHHHHHH
T ss_pred cEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCCCCHHHHHH
Confidence 47999999999964 6799999999999999999999999999999999998 68999999999999977664321
Q ss_pred -hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 154 -SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 154 -~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
++..++|+||++.+++.+++.+++.+..... + ....+..+++.++++.+++. +..++.+.+ |||||||||
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qrv 149 (224)
T 2pcj_A 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKM----G---KPKKEAKERGEYLLSELGLG-DKLSRKPYE-LSGGEQQRV 149 (224)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT----T---CCHHHHHHHHHHHHHHTTCT-TCTTCCGGG-SCHHHHHHH
T ss_pred HHhCcEEEEecCcccCCCCCHHHHHHhHHHHc----C---CCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHH
Confidence 2245899999999999999999987653221 1 11233345678889999996 567777764 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
+|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++ .+ ||++++|++|++++.|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~-~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-EL-THRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TT-SSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-Hh-CCEEEEEECCEEEEEee
Confidence 999999999999999999999999999999999999976689999999999987 55 79999999999999885
No 6
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-54 Score=392.80 Aligned_cols=221 Identities=19% Similarity=0.285 Sum_probs=188.8
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+.
T Consensus 4 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~ 79 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--VRAQKGKIIFNGQDITNKPAHVIN 79 (240)
T ss_dssp SEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH
T ss_pred CceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCCHHHHH
Confidence 458999999999964 6799999999999999999999999999999999998 689999999999999776655444
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcC-CccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS-MKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
+..++|+||++.+++.+|+.+++.+... ... ...+..+.+.++++.++ +. +..++.+.+ |||||||||+
T Consensus 80 ~~~i~~v~q~~~l~~~ltv~enl~~~~~-----~~~---~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~-LSgGq~qrv~ 149 (240)
T 1ji0_A 80 RMGIALVPEGRRIFPELTVYENLMMGAY-----NRK---DKEGIKRDLEWIFSLFPRLK-ERLKQLGGT-LSGGEQQMLA 149 (240)
T ss_dssp HTTEEEECSSCCCCTTSBHHHHHHGGGT-----TCC---CSSHHHHHHHHHHHHCHHHH-TTTTSBSSS-SCHHHHHHHH
T ss_pred hCCEEEEecCCccCCCCcHHHHHHHhhh-----cCC---CHHHHHHHHHHHHHHcccHh-hHhcCChhh-CCHHHHHHHH
Confidence 4568999999999999999999865421 011 11233455677888884 74 556777764 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||||+.+|++|||||||+|||+.+++.+++.|++++++|+|||+||||++++..+ ||++++|++|++++.|+++.
T Consensus 150 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKV-AHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-CSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999976789999999999988887 69999999999999987653
No 7
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.4e-54 Score=393.16 Aligned_cols=236 Identities=51% Similarity=0.874 Sum_probs=189.5
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+..++|++|+|.++|+++...+...+.+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 7999999999963 67999999999999999999999999999999999972246899999999999987766554445
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
+++++||++.+++.+++.+++.+...... +. .....+..+++.++++.+++..+..++.+.+.|||||||||+|||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKL---GR-EVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHH---TS-CCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhc---cc-cCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 68899999999999999998876432111 11 011223345677889999994356777765239999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHh
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE 316 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~ 316 (325)
||+.+|++|||||||+|||+.+++.++++|+++.++|+|||+||||++++..++||++++|++|++++.|+++....+..
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 236 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEA 236 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHHHHHHH
Confidence 99999999999999999999999999999999976789999999999988876459999999999999998764333333
Q ss_pred CC
Q 020477 317 GG 318 (325)
Q Consensus 317 ~~ 318 (325)
.+
T Consensus 237 ~~ 238 (250)
T 2d2e_A 237 KG 238 (250)
T ss_dssp HC
T ss_pred HH
Confidence 33
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1e-54 Score=397.09 Aligned_cols=227 Identities=26% Similarity=0.369 Sum_probs=190.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.....
T Consensus 5 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~ 80 (257)
T 1g6h_A 5 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY 80 (257)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH
T ss_pred CcEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHHH
Confidence 348999999999964 5799999999999999999999999999999999998 689999999999998766544333
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCC--------CCCChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ--------PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG 226 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 226 (325)
+..++++||++.+++.+|+.+++.+..... ..+. ......+...++.++++.+++. +..++.+.+ |||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSg 156 (257)
T 1g6h_A 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICP--GESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGE-LSG 156 (257)
T ss_dssp HHTEEECCCCCGGGGGSBHHHHHHGGGTST--TSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGG-SCH
T ss_pred hCCEEEEccCCccCCCCcHHHHHHHHHhhh--ccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchh-CCH
Confidence 345899999998888899999986542110 0010 0011233345678889999996 567777764 999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++..+ ||++++|++|++++.|
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~-~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNY-IDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGG-CSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999976689999999999998877 6999999999999998
Q ss_pred CccH
Q 020477 307 DASI 310 (325)
Q Consensus 307 ~~~~ 310 (325)
+++.
T Consensus 236 ~~~~ 239 (257)
T 1g6h_A 236 RGEE 239 (257)
T ss_dssp ESHH
T ss_pred CHHH
Confidence 8764
No 9
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.6e-54 Score=414.10 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=193.6
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...++.. .
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~G~I~i~G~~~~~~~~~~---r 75 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAE---R 75 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTCCGGG---S
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC--CCCCCeEEEECCEECCCCCHHH---C
Confidence 6999999999964 6799999999999999999999999999999999998 6899999999999998766543 4
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+|+.+|+.+|+.++.... + ....+..+++.++++.+++. ++.++++.+ |||||||||+|||
T Consensus 76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~----~---~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~-LSGGqrQRVaiAr 146 (381)
T 3rlf_A 76 GVGMVFQSYALYPHLSVAENMSFGLKLA----G---AKKEVINQRVNQVAEVLQLA-HLLDRKPKA-LSGGQRQRVAIGR 146 (381)
T ss_dssp CEEEECTTCCCCTTSCHHHHHTHHHHHT----T---CCHHHHHHHHHHHHHHTTCG-GGTTCCGGG-SCHHHHHHHHHHH
T ss_pred CEEEEecCCcCCCCCCHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHcCCc-hhhcCChhH-CCHHHHHHHHHHH
Confidence 5899999999999999999987764321 1 23455567788999999996 678888875 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+.+|++|||||||++||+..+..+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|+++.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~-aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL-ADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999999765 89999999999999888 69999999999999998764
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.5e-54 Score=393.25 Aligned_cols=222 Identities=23% Similarity=0.331 Sum_probs=188.1
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC--CCCHHH
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL--EMEPEE 152 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~--~~~~~~ 152 (325)
.++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++. ......
T Consensus 22 ~~~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~~ 97 (263)
T 2olj_A 22 LQMIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL--EDFDEGEIIIDGINLKAKDTNLNK 97 (263)
T ss_dssp CCSEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEESSSTTCCHHH
T ss_pred hheEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC--CCCCCcEEEECCEECCCccccHHH
Confidence 348999999999963 5799999999999999999999999999999999998 6899999999999985 222222
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
. +..++|+||++.+++.+|+.+++.+.... ..+ ....+..+++.++++.+++. +..++.+.+ |||||||||
T Consensus 98 ~-~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~---~~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~-LSgGqkQRv 168 (263)
T 2olj_A 98 V-REEVGMVFQRFNLFPHMTVLNNITLAPMK---VRK---WPREKAEAKAMELLDKVGLK-DKAHAYPDS-LSGGQAQRV 168 (263)
T ss_dssp H-HHHEEEECSSCCCCTTSCHHHHHHHHHHH---TSC---CCHHHHHHHHHHHHHHTTCG-GGTTSCGGG-SCHHHHHHH
T ss_pred H-hCcEEEEeCCCcCCCCCCHHHHHHHHHHH---HcC---CCHHHHHHHHHHHHHHCCCc-hHhcCChhh-CCHHHHHHH
Confidence 2 23588999999999999999998764211 011 12233445678889999996 567777764 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++..+ ||++++|++|++++.|+++.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 245 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV-GDRVLFMDGGYIIEEGKPED 245 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999976689999999999999887 69999999999999998753
No 11
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-54 Score=412.28 Aligned_cols=221 Identities=21% Similarity=0.308 Sum_probs=189.0
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH-HHh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE-ERS 154 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~-~~~ 154 (325)
++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...... ...
T Consensus 3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~G~I~i~G~~i~~~~~~~~~~ 78 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF--EQPDSGEISLSGKTIFSKNTNLPVR 78 (359)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS--SCCSEEEEEETTEEEESSSCBCCGG
T ss_pred cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC--CCCCCcEEEECCEECcccccccchh
Confidence 37999999999964 6799999999999999999999999999999999998 689999999999998321110 112
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..++|+||++.+|+.+|+.+|+.++... ......+..+++.++++.+++. ++.++.+.+ |||||||||+|
T Consensus 79 ~r~ig~vfQ~~~l~p~ltV~eni~~~l~~-------~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~-LSGGq~QRVal 149 (359)
T 3fvq_A 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGN-------GKGRTAQERQRIEAMLELTGIS-ELAGRYPHE-LSGGQQQRAAL 149 (359)
T ss_dssp GSCCEEECTTCCCCTTSCHHHHHHTTSTT-------SSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGG-SCHHHHHHHHH
T ss_pred hCCEEEEeCCCcCCCCCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHHcCCc-hHhcCChhh-CCHHHHHHHHH
Confidence 24589999999999999999998765321 1122344556788899999996 678888875 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||+|||+..+..+++.|.++. +.|.|+|+||||++++..+ ||+|++|++|+|++.|+++.
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~-aDri~vl~~G~i~~~g~~~e 225 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY-ADRIAVMKQGRILQTASPHE 225 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-CCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999888775 4589999999999999888 79999999999999998753
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5e-54 Score=393.55 Aligned_cols=222 Identities=23% Similarity=0.342 Sum_probs=188.2
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC--------
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE-------- 147 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~-------- 147 (325)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~ 80 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGAIIVNGQNINLVRDKDGQL 80 (262)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCEEECTTSSE
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEccccccccccc
Confidence 47999999999963 5799999999999999999999999999999999998 68999999999999851
Q ss_pred --CCHHH--HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcccc-ccccCCC
Q 020477 148 --MEPEE--RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDF-LNRNVNE 222 (325)
Q Consensus 148 --~~~~~--~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~ 222 (325)
.+... ..+..++|+||++.+++.+|+.+++.+.... ..+ ....+...++.++++.+++. +. .++.+.+
T Consensus 81 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~---~~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~ 153 (262)
T 1b0u_A 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ---VLG---LSKHDARERALKYLAKVGID-ERAQGKYPVH 153 (262)
T ss_dssp EESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH---TTC---CCHHHHHHHHHHHHHHTTCC-HHHHTSCGGG
T ss_pred cccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH---hcC---CCHHHHHHHHHHHHHHcCCC-chhhcCCccc
Confidence 33321 1123589999999999999999998764211 011 12233345678899999996 56 6777765
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
|||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++..+ ||++++|++|++
T Consensus 154 -LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~-~d~v~~l~~G~i 231 (262)
T 1b0u_A 154 -LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV-SSHVIFLHQGKI 231 (262)
T ss_dssp -SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHH-CSEEEEEETTEE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976689999999999999887 699999999999
Q ss_pred EEEcCccH
Q 020477 303 IKTGDASI 310 (325)
Q Consensus 303 v~~g~~~~ 310 (325)
++.|+++.
T Consensus 232 ~~~g~~~~ 239 (262)
T 1b0u_A 232 EEEGDPEQ 239 (262)
T ss_dssp EEEECHHH
T ss_pred EEeCCHHH
Confidence 99998753
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.4e-54 Score=394.10 Aligned_cols=219 Identities=21% Similarity=0.296 Sum_probs=190.1
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||++.|++ +++|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.++|+++...+...++
T Consensus 9 ~~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~ 84 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY--LSPSHGECHLLGQNLNSWQPKALA 84 (266)
T ss_dssp CCEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS--SCCSSCEEEETTEETTTSCHHHHH
T ss_pred cceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECCcCCHHHHh
Confidence 468999999999964 6899999999999999999999999999999999998 789999999999999887765543
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+ .+++++|++.+++.+++.+++.+.... .. ..+..+++.++++.+++. ++.++.+.+ |||||||||+|
T Consensus 85 ~-~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~-----~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~QRv~i 152 (266)
T 4g1u_C 85 R-TRAVMRQYSELAFPFSVSEVIQMGRAP----YG-----GSQDRQALQQVMAQTDCL-ALAQRDYRV-LSGGEQQRVQL 152 (266)
T ss_dssp H-HEEEECSCCCCCSCCBHHHHHHGGGTT----SC-----STTHHHHHHHHHHHTTCS-TTTTSBGGG-CCHHHHHHHHH
T ss_pred h-eEEEEecCCccCCCCCHHHHHHhhhhh----cC-----cHHHHHHHHHHHHHcCCh-hHhcCCccc-CCHHHHHHHHH
Confidence 3 478999999888889999988654321 11 122345677889999996 567777764 99999999999
Q ss_pred HHHHHh------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 235 LQLAVL------GADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 235 AraL~~------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||||++ +|++|||||||+|||+.+++.++++|++++++ ++|||+||||++++..+ ||++++|++|++++.|+
T Consensus 153 AraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~-~d~v~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALY-ADRIMLLAQGKLVACGT 231 (266)
T ss_dssp HHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHH-CSEEEEEETTEEEEEEC
T ss_pred HHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHh-CCEEEEEECCEEEEEcC
Confidence 999999 99999999999999999999999999999755 57999999999999887 69999999999999998
Q ss_pred ccH
Q 020477 308 ASI 310 (325)
Q Consensus 308 ~~~ 310 (325)
++.
T Consensus 232 ~~~ 234 (266)
T 4g1u_C 232 PEE 234 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 14
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.6e-54 Score=401.30 Aligned_cols=260 Identities=18% Similarity=0.266 Sum_probs=196.8
Q ss_pred hhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHH
Q 020477 40 SNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKS 119 (325)
Q Consensus 40 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKS 119 (325)
..++.+..+..|+.++++............+.......|+++||+|+|++ ++.+|+|+||+|++||++||+||||||||
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKS 94 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD-GRETLQDVSFTVMPGQTLALVGPSGAGKS 94 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST-TCEEEEEEEEEECTTCEEEEESSSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC-CCceeeeeeEEEcCCCEEEEECCCCchHH
Confidence 35667778888988887654432221111111223457999999999964 46799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH
Q 020477 120 TLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY 199 (325)
Q Consensus 120 TLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (325)
||+++|+|+ ++|++|+|.++|+++..++...+++ .++|+||++.+|+ .|+.+|+.++. ......+..
T Consensus 95 TLl~ll~gl--~~p~~G~I~i~G~~i~~~~~~~~r~-~i~~v~Q~~~lf~-~Tv~eNi~~~~---------~~~~~~~~~ 161 (306)
T 3nh6_A 95 TILRLLFRF--YDISSGCIRIDGQDISQVTQASLRS-HIGVVPQDTVLFN-DTIADNIRYGR---------VTAGNDEVE 161 (306)
T ss_dssp HHHHHHTTS--SCCSEEEEEETTEETTSBCHHHHHH-TEEEECSSCCCCS-EEHHHHHHTTS---------TTCCHHHHH
T ss_pred HHHHHHHcC--CCCCCcEEEECCEEcccCCHHHHhc-ceEEEecCCccCc-ccHHHHHHhhc---------ccCCHHHHH
Confidence 999999998 7899999999999999888765543 5899999999885 59999876532 111122211
Q ss_pred H-----hHHHHHHhcCCcc-ccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC
Q 020477 200 A-----YLYPKLERLSMKT-DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK 273 (325)
Q Consensus 200 ~-----~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g 273 (325)
. .+.+.++.+.... ....+.. .+|||||||||+|||||+.+|+||||||||++||+.+++.|++.|+++.+ +
T Consensus 162 ~~~~~~~l~~~i~~lp~gl~t~~~~~g-~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~ 239 (306)
T 3nh6_A 162 AAAQAAGIHDAIMAFPEGYRTQVGERG-LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-N 239 (306)
T ss_dssp HHHHHHTCHHHHHHSTTGGGCEESTTS-BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHhCcHHHHHhccchhhhHhcCCc-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-C
Confidence 1 1222333332111 1222333 35999999999999999999999999999999999999999999999864 5
Q ss_pred cEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020477 274 NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319 (325)
Q Consensus 274 ~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~ 319 (325)
+|+|+||||++.+.. ||+|++|++|+|++.|+++ +++...+.
T Consensus 240 ~Tvi~itH~l~~~~~--aD~i~vl~~G~iv~~G~~~--el~~~~~~ 281 (306)
T 3nh6_A 240 RTTIVVAHRLSTVVN--ADQILVIKDGCIVERGRHE--ALLSRGGV 281 (306)
T ss_dssp SEEEEECCSHHHHHT--CSEEEEEETTEEEEEECHH--HHHHHTSH
T ss_pred CEEEEEEcChHHHHc--CCEEEEEECCEEEEECCHH--HHHhcChH
Confidence 899999999998865 6999999999999999875 45555553
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-53 Score=388.84 Aligned_cols=221 Identities=25% Similarity=0.362 Sum_probs=188.5
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++.. .....
T Consensus 12 ~~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~~-~~~~~ 86 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--IKPSSGIVTVFGKNVVE-EPHEV 86 (256)
T ss_dssp --CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTT-CHHHH
T ss_pred cCCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCc-cHHHH
Confidence 4578999999999963 6799999999999999999999999999999999998 68999999999999865 23222
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
+..++|+||++.+++.+|+.+++.+..... + ....+..+++.++++.+++. +..++.+.+ |||||||||+
T Consensus 87 -~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LSgGq~qRv~ 156 (256)
T 1vpl_A 87 -RKLISYLPEEAGAYRNMQGIEYLRFVAGFY----A---SSSSEIEEMVERATEIAGLG-EKIKDRVST-YSKGMVRKLL 156 (256)
T ss_dssp -HTTEEEECTTCCCCTTSBHHHHHHHHHHHH----C---CCHHHHHHHHHHHHHHHCCG-GGGGSBGGG-CCHHHHHHHH
T ss_pred -hhcEEEEcCCCCCCCCCcHHHHHHHHHHHc----C---CChHHHHHHHHHHHHHCCCc-hHhcCChhh-CCHHHHHHHH
Confidence 245899999999999899999987643211 1 11233345677889999996 567777764 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 232 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL-CDRIALIHNGTIVETGTVEE 232 (256)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT-CSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999976689999999999999887 69999999999999987653
No 16
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.8e-53 Score=402.94 Aligned_cols=220 Identities=18% Similarity=0.323 Sum_probs=192.5
Q ss_pred CCCcEEEEEEEEEE-CCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 74 SQPLLQVTGLTAVI-AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 74 ~~~~l~~~~ls~~y-~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
..++|+++||+++| ++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...+..
T Consensus 11 ~~~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~- 85 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL--ERPTKGDVWIGGKRVTDLPPQ- 85 (355)
T ss_dssp CCEEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTCCGG-
T ss_pred CCceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECCEECCcCChh-
Confidence 45689999999999 53 5799999999999999999999999999999999998 689999999999998765432
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
+..++|+||++.+|+.+|+.+++.+..... + ....+..+++.++++.+++. ++.++.+.+ |||||||||
T Consensus 86 --~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~----~---~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~-LSGGq~QRv 154 (355)
T 1z47_A 86 --KRNVGLVFQNYALFQHMTVYDNVSFGLREK----R---VPKDEMDARVRELLRFMRLE-SYANRFPHE-LSGGQQQRV 154 (355)
T ss_dssp --GSSEEEECGGGCCCTTSCHHHHHHHHHHHT----T---CCHHHHHHHHHHHHHHTTCG-GGTTSCGGG-SCHHHHHHH
T ss_pred --hCcEEEEecCcccCCCCCHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHcCCh-hHhcCCccc-CCHHHHHHH
Confidence 245899999999999999999987754321 1 12344456788899999996 678888865 999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
+|||||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|+|++.|+++.
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~-adri~vl~~G~i~~~g~~~~ 232 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV-ADRVLVLHEGNVEQFGTPEE 232 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999755 89999999999999887 69999999999999998753
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4e-53 Score=403.05 Aligned_cols=217 Identities=23% Similarity=0.341 Sum_probs=190.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...++.. .
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~~---r 75 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI--YKPTSGKIYFDEKDVTELPPKD---R 75 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGGG---T
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--CCCCceEEEECCEECCcCCHhH---C
Confidence 6999999999963 6799999999999999999999999999999999998 6899999999999997765432 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+|+.+|+.+|+.+..... + ....+..+++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~----~---~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~-LSGGq~QRvalAr 146 (362)
T 2it1_A 76 NVGLVFQNWALYPHMTVYKNIAFPLELR----K---APREEIDKKVREVAKMLHID-KLLNRYPWQ-LSGGQQQRVAIAR 146 (362)
T ss_dssp TEEEECTTCCCCTTSCHHHHHHHHHHHT----T---CCHHHHHHHHHHHHHHTTCT-TCTTCCGGG-SCHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCc-hHhhCChhh-CCHHHHHHHHHHH
Confidence 5899999999999999999987764321 1 12344456788899999996 677888865 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|+|++.|+++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~-adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAM-ADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999654 89999999999999887 69999999999999998753
No 18
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-53 Score=403.35 Aligned_cols=217 Identities=21% Similarity=0.338 Sum_probs=188.9
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...++. +.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~---~r 75 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI--YKPTSGEIYFDDVLVNDIPPK---YR 75 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGG---GT
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC--CCCCccEEEECCEECCCCChh---hC
Confidence 6999999999963 6799999999999999999999999999999999998 689999999999999776543 23
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+|+.+|+.+++.+.... ......+..+++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~-------~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~-LSgGq~QRvalAr 146 (359)
T 2yyz_A 76 EVGMVFQNYALYPHMTVFENIAFPLRA-------RRISKDEVEKRVVEIARKLLID-NLLDRKPTQ-LSGGQQQRVALAR 146 (359)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHGGGSS-------SCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGG-SCHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHcCCc-hHhcCChhh-CCHHHHHHHHHHH
Confidence 589999999999999999998764311 0111222335678889999996 678888875 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|+++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~-adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTM-ASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999998754 89999999999999887 69999999999999998753
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=6.4e-53 Score=402.98 Aligned_cols=217 Identities=23% Similarity=0.356 Sum_probs=184.6
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...++.. .
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~~---r 83 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPKD---R 83 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGGG---G
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCceEEEECCEECCCCChhh---C
Confidence 6999999999963 6799999999999999999999999999999999998 6899999999999997765432 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+|+.+|+.+++.+..... .....+..+++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~-------~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~-LSGGq~QRvalAr 154 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIK-------KFPKDEIDKRVRWAAELLQIE-ELLNRYPAQ-LSGGQRQRVAVAR 154 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC---------CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTT-CCSSCHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHcCCh-hHhcCChhh-CCHHHHHHHHHHH
Confidence 5899999999999999999987643211 122344456788899999996 678888875 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|+++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~-adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM-GDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999755 89999999999999887 69999999999999998753
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1e-52 Score=401.96 Aligned_cols=217 Identities=22% Similarity=0.305 Sum_probs=189.7
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC------CCH
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE------MEP 150 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~------~~~ 150 (325)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++.. .++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--EEPSRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC--CCCCccEEEECCEECccccccccCCH
Confidence 6999999999963 6799999999999999999999999999999999998 68999999999998854 433
Q ss_pred HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
. +..++|+||++.+|+.+|+.+++.+..... + ....+..+++.++++.+++. ++.++.+.+ |||||||
T Consensus 79 ~---~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~----~---~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~-LSGGq~Q 146 (372)
T 1g29_1 79 K---DRDIAMVFQSYALYPHMTVYDNIAFPLKLR----K---VPRQEIDQRVREVAELLGLT-ELLNRKPRE-LSGGQRQ 146 (372)
T ss_dssp G---GSSEEEECSCCCCCTTSCHHHHHHHHHHHT----T---CCHHHHHHHHHHHHHHHTCG-GGTTCCGGG-SCHHHHH
T ss_pred h---HCCEEEEeCCCccCCCCCHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHCCCc-hHhcCCccc-CCHHHHH
Confidence 2 245899999999999999999987764321 1 12334456788899999996 677888865 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+|||||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|+++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~-adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTM-GDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh-CCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999998754 89999999999999887 6999999999999999875
Q ss_pred H
Q 020477 310 I 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 226 ~ 226 (372)
T 1g29_1 226 E 226 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.2e-53 Score=401.58 Aligned_cols=217 Identities=21% Similarity=0.315 Sum_probs=188.8
Q ss_pred cEEEEEEEEEECCCccc--ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC-----CC
Q 020477 77 LLQVTGLTAVIAESKQE--ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE-----ME 149 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~--iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~-----~~ 149 (325)
+|+++||+++|++ ++ +|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++.. .+
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--DVPSTGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS--SCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECcccccccCC
Confidence 6999999999963 56 99999999999999999999999999999999998 68999999999998854 32
Q ss_pred HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020477 150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER 229 (325)
Q Consensus 150 ~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr 229 (325)
.. +..++|+||++.+|+.+|+.+++.+.... ......+..+++.++++.+++. ++.++.+.+ ||||||
T Consensus 79 ~~---~r~ig~v~Q~~~l~~~ltv~eni~~~~~~-------~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~-LSGGq~ 146 (353)
T 1oxx_K 79 PE---DRKIGMVFQTWALYPNLTAFENIAFPLTN-------MKMSKEEIRKRVEEVAKILDIH-HVLNHFPRE-LSGAQQ 146 (353)
T ss_dssp GG---GSCEEEEETTSCCCTTSCHHHHHHGGGTT-------SSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGG-SCHHHH
T ss_pred hh---hCCEEEEeCCCccCCCCCHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHcCCc-hHhcCChhh-CCHHHH
Confidence 22 24589999999999999999998765321 1122344456788899999996 677888865 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||+|||||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|++
T Consensus 147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~-adri~vl~~G~i~~~g~~ 225 (353)
T 1oxx_K 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI-ADRVGVLVKGKLVQVGKP 225 (353)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999654 89999999999999887 699999999999999987
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 226 ~~ 227 (353)
T 1oxx_K 226 ED 227 (353)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-52 Score=398.23 Aligned_cols=213 Identities=22% Similarity=0.374 Sum_probs=186.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
||+++||+++|++ + +|+++||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++...++.. .
T Consensus 1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~~~g~~i~~~~~~~---r 72 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--HVPDSGRILLDGKDVTDLSPEK---H 72 (348)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS--SCCSEEEEEETTEECTTSCHHH---H
T ss_pred CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC--CCCCCcEEEECCEECCCCchhh---C
Confidence 5899999999963 5 99999999999999999999999999999999998 6899999999999997765432 2
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+|+.+|+.+|+.+..... +.. .. +++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~----~~~---~~---~~v~~~l~~~~L~-~~~~~~~~~-LSgGq~QRvalAr 140 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMK----KIK---DP---KRVLDTARDLKIE-HLLDRNPLT-LSGGEQQRVALAR 140 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHH----CCC---CH---HHHHHHHHHTTCT-TTTTSCGGG-SCHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHc----CCC---HH---HHHHHHHHHcCCc-hHhcCChhh-CCHHHHHHHHHHH
Confidence 4789999999999999999987764321 111 11 4577889999996 677888865 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+.+|++|||||||++||+..++.+.+.|+++.+ .|.|+|+||||++++..+ ||+|++|++|++++.|+++.
T Consensus 141 aL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~-adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM-ADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-CSEEEEESSSCEEEEECHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999965 489999999999999887 69999999999999998753
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.3e-52 Score=387.26 Aligned_cols=225 Identities=22% Similarity=0.231 Sum_probs=184.1
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC--CCCHHH
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL--EMEPEE 152 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~--~~~~~~ 152 (325)
.++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++. ..+...
T Consensus 19 ~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~ 94 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY--EPATSGTVNLFGKMPGKVGYSAET 94 (279)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTBCCC---CCHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCeEEEECCEEcccccCCHHH
Confidence 447999999999964 6799999999999999999999999999999999998 6899999999999886 444443
Q ss_pred HhhccEEEeccCCccC--CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 153 RSLAGLFMSFQSPVEI--PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
++ ..++|+||++.++ ..+|+.+++.+.........+. ...+..+++.++++.+++. +..++.+.+ |||||||
T Consensus 95 ~~-~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LSgGqkq 168 (279)
T 2ihy_A 95 VR-QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD---IDDEIRNEAHQLLKLVGMS-AKAQQYIGY-LSTGEKQ 168 (279)
T ss_dssp HH-TTEEEECHHHHTTSCTTSBHHHHHHTTC------------CCHHHHHHHHHHHHHTTCG-GGTTSBGGG-SCHHHHH
T ss_pred Hc-CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccC---CcHHHHHHHHHHHHHcCCh-hHhcCChhh-CCHHHHH
Confidence 33 4589999997643 3469999886542110000010 1123345677889999995 567777765 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEE--EEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSL--LMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv--IivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
||+|||||+.+|++|||||||+|||+.+++.++++|++++++|+|| |+||||++++..+ ||++++|++|++++.|++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~-~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITAN-FSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTT-CCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHh-CCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999997658899 9999999998877 699999999999999876
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 248 ~~ 249 (279)
T 2ihy_A 248 ED 249 (279)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4e-52 Score=381.77 Aligned_cols=217 Identities=26% Similarity=0.373 Sum_probs=181.2
Q ss_pred cEEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 77 LLQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
+|+++||+++|+.++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++... ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~---~~ 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEPTSGDVLYDGERKKGY---EI 76 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCHH---HH
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEECCEECchH---Hh
Confidence 689999999996222 4699999999999999999999999999999999998 689999999999987532 22
Q ss_pred hhccEEEeccCC-ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-ccccccCCCCCChHHHHH
Q 020477 154 SLAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 154 ~~~~i~~~~Q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQR 231 (325)
+..++|+||++ ..++..|+.+++.+.... . .. ..+..+++.++++.+++.. +..++.+.+ ||||||||
T Consensus 77 -~~~i~~v~q~~~~~~~~~tv~enl~~~~~~----~-~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-LSgGq~qR 146 (266)
T 2yz2_A 77 -RRNIGIAFQYPEDQFFAERVFDEVAFAVKN----F-YP---DRDPVPLVKKAMEFVGLDFDSFKDRVPFF-LSGGEKRR 146 (266)
T ss_dssp -GGGEEEECSSGGGGCCCSSHHHHHHHTTTT----T-CT---TSCSHHHHHHHHHHTTCCHHHHTTCCGGG-SCHHHHHH
T ss_pred -hhhEEEEeccchhhcCCCcHHHHHHHHHHh----c-CC---HHHHHHHHHHHHHHcCcCCcccccCChhh-CCHHHHHH
Confidence 23589999996 456678999988664211 0 11 1112345677899999951 456777764 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
|+|||||+.+|++|||||||+|||+.+++.+++.|++++++|.|||+||||++++..+ ||++++|++|++++.|+++
T Consensus 147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~-~d~v~~l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINH-VDRVVVLEKGKKVFDGTRM 223 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGG-CSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999975689999999999998877 6999999999999988765
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-52 Score=375.67 Aligned_cols=212 Identities=19% Similarity=0.303 Sum_probs=181.0
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
||+++||+++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...... +.
T Consensus 1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~---~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI--VKPDRGEVRLNGADITPLPPE---RR 70 (240)
T ss_dssp CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCTT---TS
T ss_pred CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCchh---hC
Confidence 5789999999952 59999999999 99999999999999999999998 689999999999998653321 23
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.++|+||++.+++.+|+.+++.+.... . ......+++.++++.+++. +..++.+.+ |||||||||+|||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~----~-----~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGqkqRv~lAr 139 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRN----V-----ERVERDRRVREMAEKLGIA-HLLDRKPAR-LSGGERQRVALAR 139 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTT----S-----CHHHHHHHHHHHHHTTTCT-TTTTCCGGG-SCHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHH----c-----CCchHHHHHHHHHHHcCCH-HHhcCChhh-CCHHHHHHHHHHH
Confidence 578999999999999999988654210 0 0111245677889999996 567777764 9999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
||+.+|++|||||||+|||+.+++.+++.|++++++ |+|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 140 al~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML-ADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999998654 88999999999998887 69999999999999997653
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.1e-51 Score=379.85 Aligned_cols=224 Identities=21% Similarity=0.307 Sum_probs=180.4
Q ss_pred CCcEEEEEEEEEECC-CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 75 QPLLQVTGLTAVIAE-SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~-~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..+|+++||+++|++ ..+++|+++||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL--YQPTGGKVLLDGEPLVQYDHHYL 91 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGGGBCHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCCEEEECCEEcccCCHHHH
Confidence 458999999999964 125799999999999999999999999999999999998 78999999999999876554433
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCC-CCCChHHHHHhHHHHHHhc--CCccccccccCCCCCChHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ-PEIGPIEFYAYLYPKLERL--SMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQ 230 (325)
+ ..++|+||++.+++ .|+.+++.+... .... ...........+.+.++.+ ++. ...++.+. +|||||||
T Consensus 92 ~-~~i~~v~Q~~~l~~-~tv~enl~~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~-~LSgGq~Q 163 (271)
T 2ixe_A 92 H-TQVAAVGQEPLLFG-RSFRENIAYGLT----RTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGN-QLSGGQRQ 163 (271)
T ss_dssp H-HHEEEECSSCCCCS-SBHHHHHHTTCS----SCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGT-TSCHHHHH
T ss_pred h-ccEEEEecCCcccc-ccHHHHHhhhcc----cCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcC-CCCHHHHH
Confidence 2 35899999998887 499998865321 0000 0000001112345667777 554 44566665 49999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
||+|||||+.+|+||||||||+|||+.+++.+++.|+++.+ +|+|||+||||++++. . ||+|++|++|++++.|+++
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~-~d~v~~l~~G~i~~~g~~~ 241 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-R-AHHILFLKEGSVCEQGTHL 241 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-T-CSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-h-CCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864 4899999999999886 4 7999999999999999865
Q ss_pred H
Q 020477 310 I 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 242 ~ 242 (271)
T 2ixe_A 242 Q 242 (271)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.2e-51 Score=372.93 Aligned_cols=212 Identities=24% Similarity=0.375 Sum_probs=173.1
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
-++++||+++|+++++.+|+++||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...++ .
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~i~g~~~~~~~~~~~~-~ 83 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--YIPENGQVLIDGHDLALADPNWLR-R 83 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTTSCHHHHH-H
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHHH-h
Confidence 5899999999942236799999999999999999999999999999999998 789999999999999876654433 3
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc----------ccccccCCCCCCh
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT----------DFLNRNVNEGFSG 226 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 226 (325)
.++|+||++.+++ .|+.+++.+.. ..... +++.++++.+++.. ...++.+. +|||
T Consensus 84 ~i~~v~Q~~~l~~-~tv~enl~~~~---------~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~-~LSg 148 (247)
T 2ff7_A 84 QVGVVLQDNVLLN-RSIIDNISLAN---------PGMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGA-GLSG 148 (247)
T ss_dssp HEEEECSSCCCTT-SBHHHHHTTTC---------TTCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTT-CCCH
T ss_pred cEEEEeCCCcccc-ccHHHHHhccC---------CCCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCC-CCCH
Confidence 5889999998876 59988875431 01111 12334455555431 12233334 5999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++. +|+|||+||||++.+. . ||++++|++|++++.|
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~-~-~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVK-N-ADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGT-T-SSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHH-h-CCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999985 5889999999999875 4 7999999999999999
Q ss_pred Ccc
Q 020477 307 DAS 309 (325)
Q Consensus 307 ~~~ 309 (325)
+++
T Consensus 226 ~~~ 228 (247)
T 2ff7_A 226 KHK 228 (247)
T ss_dssp CHH
T ss_pred CHH
Confidence 765
No 28
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.9e-50 Score=406.31 Aligned_cols=273 Identities=21% Similarity=0.285 Sum_probs=209.3
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.+++................++++||+|+|+++++++|+|+||+|++||+
T Consensus 290 ~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~ 369 (578)
T 4a82_A 290 LFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGET 369 (578)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCE
Confidence 34667777777888899999999999988765443222111111223457999999999976556799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
+||+||||||||||+++|+|+ ++|++|+|.++|+++...+....++ .+++++|++.+|+. |+.+|+..+.
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~~~l~~~-tv~eni~~~~------ 439 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRF--YDVTSGQILIDGHNIKDFLTGSLRN-QIGLVQQDNILFSD-TVKENILLGR------ 439 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTS--SCCSEEEEEETTEEGGGSCHHHHHH-TEEEECSSCCCCSS-BHHHHHGGGC------
T ss_pred EEEECCCCChHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHHhh-heEEEeCCCccCcc-cHHHHHhcCC------
Confidence 999999999999999999998 7899999999999998887765543 48999999999876 9998875431
Q ss_pred cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
+....++..+. +.+.++.+..+.+..-...+.+||||||||++|||||+++|++||||||||+||+.+++.+
T Consensus 440 ---~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i 516 (578)
T 4a82_A 440 ---PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516 (578)
T ss_dssp ---SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 11222222111 1122333321111111112235999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG 318 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~ 318 (325)
.+.|+++.+ ++|+|+||||++.+.. ||+|++|++|++++.|+++ ++++..+
T Consensus 517 ~~~l~~~~~-~~t~i~itH~l~~~~~--~d~i~~l~~G~i~~~g~~~--el~~~~~ 567 (578)
T 4a82_A 517 QEALDVLSK-DRTTLIVAHRLSTITH--ADKIVVIENGHIVETGTHR--ELIAKQG 567 (578)
T ss_dssp HHHHHHHTT-TSEEEEECSSGGGTTT--CSEEEEEETTEEEEEECHH--HHHHTTS
T ss_pred HHHHHHHcC-CCEEEEEecCHHHHHc--CCEEEEEECCEEEEECCHH--HHHhCCc
Confidence 999999854 6899999999998864 7999999999999999875 4555555
No 29
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.1e-50 Score=405.82 Aligned_cols=265 Identities=18% Similarity=0.192 Sum_probs=205.1
Q ss_pred hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEE
Q 020477 29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH 108 (325)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~ 108 (325)
..|+..+......+.+...+.+|+.++++.++.................++++||+|+|+++++++|+|+||+|++||++
T Consensus 293 ~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~ 372 (587)
T 3qf4_A 293 MFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLV 372 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEE
Confidence 34555666666778888899999999887654432221111111234579999999999755578999999999999999
Q ss_pred EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020477 109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL 188 (325)
Q Consensus 109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
||+||||||||||+++|+|+ ++|++|+|.++|+++...+....+. .+++++|++.+|+. |+.+|+...
T Consensus 373 ~ivG~sGsGKSTll~~l~g~--~~~~~G~i~i~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~~-tv~eni~~~-------- 440 (587)
T 3qf4_A 373 AVLGETGSGKSTLMNLIPRL--IDPERGRVEVDELDVRTVKLKDLRG-HISAVPQETVLFSG-TIKENLKWG-------- 440 (587)
T ss_dssp EEECSSSSSHHHHHHTTTTS--SCCSEEEEEESSSBGGGBCHHHHHH-HEEEECSSCCCCSE-EHHHHHTTT--------
T ss_pred EEECCCCCCHHHHHHHHhCC--ccCCCcEEEECCEEcccCCHHHHHh-heEEECCCCcCcCc-cHHHHHhcc--------
Confidence 99999999999999999998 7899999999999998887765443 48999999998865 888887542
Q ss_pred CCCCCChHHHHHh-----HHHHHHhcCCccc-cccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 189 GQPEIGPIEFYAY-----LYPKLERLSMKTD-FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 189 ~~~~~~~~~~~~~-----~~~~l~~~~l~~~-~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
.+....++..+. +.+.++.+..+.+ ...+.. .+||||||||++|||||+++|++|||||||++||+.+++.+
T Consensus 441 -~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i 518 (587)
T 3qf4_A 441 -REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGG-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518 (587)
T ss_dssp -CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSS-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCC-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 111222222211 2233444422111 223333 45999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
.+.|+++. +|+|+|+||||++.+. . ||+|++|++|++++.|+++.
T Consensus 519 ~~~l~~~~-~~~tvi~itH~l~~~~-~-~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 519 LDGLKRYT-KGCTTFIITQKIPTAL-L-ADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp HHHHHHHS-TTCEEEEEESCHHHHT-T-SSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhC-CCCEEEEEecChHHHH-h-CCEEEEEECCEEEEECCHHH
Confidence 99999985 4789999999999886 4 79999999999999998753
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.1e-50 Score=368.58 Aligned_cols=210 Identities=21% Similarity=0.259 Sum_probs=180.7
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++++++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|+ |+|.++|+++...+...++
T Consensus 3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--~~p~-G~i~~~g~~~~~~~~~~~~- 72 (249)
T 2qi9_C 3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--TSGK-GSIQFAGQPLEAWSATKLA- 72 (249)
T ss_dssp EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCE-EEEEETTEEGGGSCHHHHH-
T ss_pred cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCC-eEEEECCEECCcCCHHHHh-
Confidence 37999999975 589999999999999999999999999999999998 6789 9999999998766554433
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|++|++.+++.+|+.+++.+... .... ..++.++++.+++. +..++.+.+ |||||||||+||
T Consensus 73 ~~i~~v~q~~~~~~~~tv~e~l~~~~~--------~~~~----~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qrv~lA 138 (249)
T 2qi9_C 73 LHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTR----TELLNDVAGALALD-DKLGRSTNQ-LSGGEWQRVRLA 138 (249)
T ss_dssp HHEEEECSCCCCCTTCBHHHHHHTTCS--------STTC----HHHHHHHHHHTTCG-GGTTSBGGG-CCHHHHHHHHHH
T ss_pred ceEEEECCCCccCCCCcHHHHHHHhhc--------cCCc----HHHHHHHHHHcCCh-hHhcCChhh-CCHHHHHHHHHH
Confidence 348899999998888999998764310 0011 24567789999996 567777764 999999999999
Q ss_pred HHHHhCCC-------EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 236 QLAVLGAD-------LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 236 raL~~~p~-------lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||+.+|+ +|||||||+|||+.+++.++++|+++.++|+|||++|||++++..+ ||++++|++|++++.|++
T Consensus 139 raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~-~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEEEEEETTEEEEEEEH
T ss_pred HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCH
Confidence 99999999 9999999999999999999999999976689999999999999877 699999999999999876
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 218 ~~ 219 (249)
T 2qi9_C 218 EE 219 (249)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 31
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.7e-50 Score=367.03 Aligned_cols=211 Identities=21% Similarity=0.263 Sum_probs=177.1
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++|+++||+++|+. ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+ +
T Consensus 3 ~~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~--------------~ 65 (253)
T 2nq2_C 3 KALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI--HRPIQGKIEV--------------Y 65 (253)
T ss_dssp EEEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS--SCCSEEEEEE--------------C
T ss_pred ceEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEE--------------e
Confidence 37999999999962 36799999999999999999999999999999999998 6899999982 1
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
..++|+||++.+++.+++.+++.+..... .+.......+..+++.++++.+++. +..++.+.+ |||||||||+||
T Consensus 66 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qrv~lA 140 (253)
T 2nq2_C 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTH---INTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTS-LSGGQRQLILIA 140 (253)
T ss_dssp SCEEEECSCCCCSSCCBHHHHHHGGGGGG---SCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGG-SCHHHHHHHHHH
T ss_pred ccEEEEcCCCccCCCCCHHHHHHHhhhhh---cccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhh-CCHHHHHHHHHH
Confidence 24889999998888889999986642110 0100001123345677889999996 567777764 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
|||+.+|++|||||||+|||+.+++.+++.|+++.++ |+|||++|||++++..+ ||++++|++|+ ++.|+++.
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~-~d~v~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAI-ANKTLLLNKQN-FKFGETRN 214 (253)
T ss_dssp HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH-CSEEEEEETTE-EEEEEHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEeCCe-EecCCHHH
Confidence 9999999999999999999999999999999999765 89999999999999887 69999999999 88887653
No 32
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.7e-49 Score=399.66 Aligned_cols=268 Identities=22% Similarity=0.313 Sum_probs=209.5
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.+++.... .........+++++||+++|+++++++|+|+||+|++||+
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~ 371 (582)
T 3b60_A 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKT 371 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCE
Confidence 44677777777888889999999999988765442211 1111122457999999999974336799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
+||+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+++ .+++++|++.+|+. |+.+|+..+..
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~-tv~eni~~~~~----- 442 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRF--YDIDEGHILMDGHDLREYTLASLRN-QVALVSQNVHLFND-TVANNIAYART----- 442 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTT--TCCSEEEEEETTEETTTBCHHHHHH-TEEEECSSCCCCSS-BHHHHHHTTTT-----
T ss_pred EEEECCCCCCHHHHHHHHhhc--cCCCCCeEEECCEEccccCHHHHHh-hCeEEccCCcCCCC-CHHHHHhccCC-----
Confidence 999999999999999999998 7899999999999998877655443 58999999998875 99998865310
Q ss_pred cCCCCCChHHHHHhHHHHHHhcCCcccccc----------ccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHH
Q 020477 188 LGQPEIGPIEFYAYLYPKLERLSMKTDFLN----------RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257 (325)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~ 257 (325)
+....+ ++.++++.+++. ++.+ ...+.+||||||||++|||||+++|++|||||||++||+.
T Consensus 443 ---~~~~~~----~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b60_A 443 ---EEYSRE----QIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_dssp ---SCCCHH----HHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred ---CCCCHH----HHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 111222 234445555542 1111 1123469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020477 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319 (325)
Q Consensus 258 ~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~ 319 (325)
+++.+.+.|+++.+ |+|+|+||||++.+. . ||+|++|++|++++.|+++ ++++..+.
T Consensus 515 ~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~-~d~i~~l~~G~i~~~g~~~--~l~~~~~~ 571 (582)
T 3b60_A 515 SERAIQAALDELQK-NRTSLVIAHRLSTIE-Q-ADEIVVVEDGIIVERGTHS--ELLAQHGV 571 (582)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECSCGGGTT-T-CSEEEEEETTEEEEEECHH--HHHHHTSS
T ss_pred HHHHHHHHHHHHhC-CCEEEEEeccHHHHH-h-CCEEEEEECCEEEEecCHH--HHHHcCCH
Confidence 99999999999865 889999999999876 4 7999999999999999765 44555553
No 33
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9.9e-50 Score=402.78 Aligned_cols=267 Identities=21% Similarity=0.326 Sum_probs=208.0
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.+++... ...+......+++++||+|+|+++++++|+|+||+|++||+
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~ 371 (582)
T 3b5x_A 294 LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN--GKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKT 371 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCE
Confidence 4567777777788888999999999988875443221 11111122457999999999974336799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
+||+||||||||||+|+|+|+ ++|++|+|.++|+++...+....+ ..+++++|++.+|+. |+.+|+..+..
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~~-~~i~~v~Q~~~l~~~-tv~eni~~~~~----- 442 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRF--YDVDSGSICLDGHDVRDYKLTNLR-RHFALVSQNVHLFND-TIANNIAYAAE----- 442 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCCEEEECCEEhhhCCHHHHh-cCeEEEcCCCccccc-cHHHHHhccCC-----
Confidence 999999999999999999998 789999999999999877665543 358999999998875 89888765310
Q ss_pred cCCCCCChHHHHHhHHHHHHhcCCccccccc----------cCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHH
Q 020477 188 LGQPEIGPIEFYAYLYPKLERLSMKTDFLNR----------NVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257 (325)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~ 257 (325)
+.... +++.++++.+++. ++.++ ..+.+||||||||++|||||+++|++|||||||++||+.
T Consensus 443 ---~~~~~----~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b5x_A 443 ---GEYTR----EQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514 (582)
T ss_pred ---CCCCH----HHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 11112 2234445555543 12211 122359999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020477 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG 318 (325)
Q Consensus 258 ~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~ 318 (325)
+++.+.+.|+++.+ |+|+|+||||++.+. . ||+|++|++|++++.|+++ ++++..+
T Consensus 515 ~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~-~d~i~~l~~G~i~~~g~~~--~l~~~~~ 570 (582)
T 3b5x_A 515 SERAIQAALDELQK-NKTVLVIAHRLSTIE-Q-ADEILVVDEGEIIERGRHA--DLLAQDG 570 (582)
T ss_pred HHHHHHHHHHHHcC-CCEEEEEecCHHHHH-h-CCEEEEEECCEEEEECCHH--HHHhCCc
Confidence 99999999999864 889999999999886 4 7999999999999999765 4445544
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.2e-49 Score=364.22 Aligned_cols=213 Identities=21% Similarity=0.301 Sum_probs=172.1
Q ss_pred CcEEEEEEEEEECCCc-ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 76 PLLQVTGLTAVIAESK-QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~-~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.+|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++| +|+|.++|+++...+....+
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~-~G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF--YDA-EGDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCC-EEEEEETTEEGGGBCHHHHH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc--CCC-CeEEEECCEEhhhcCHHHHh
Confidence 4799999999997421 4699999999999999999999999999999999998 556 89999999998766554433
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc------c----cccccCCCCC
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT------D----FLNRNVNEGF 224 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~~L 224 (325)
..++|+||++.+++ .|+.+++.+.. ..... +.+.+.++.+++.. + ..++.+. +|
T Consensus 93 -~~i~~v~Q~~~l~~-~tv~enl~~~~---------~~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~-~L 156 (260)
T 2ghi_A 93 -SIIGIVPQDTILFN-ETIKYNILYGK---------LDATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGM-KL 156 (260)
T ss_dssp -TTEEEECSSCCCCS-EEHHHHHHTTC---------TTCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSB-CC
T ss_pred -ccEEEEcCCCcccc-cCHHHHHhccC---------CCCCH----HHHHHHHHHhCCHHHHHhccccccccccCCcC-cC
Confidence 45899999998886 59988875421 01111 12334455555421 1 1223444 59
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
||||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++.+ ++|||+||||++++. . ||++++|++|++++
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~-~-~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTIS-S-AESIILLNKGKIVE 233 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGST-T-CSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-h-CCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 789999999999875 4 79999999999999
Q ss_pred EcCccH
Q 020477 305 TGDASI 310 (325)
Q Consensus 305 ~g~~~~ 310 (325)
.|+++.
T Consensus 234 ~g~~~~ 239 (260)
T 2ghi_A 234 KGTHKD 239 (260)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998753
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-51 Score=369.34 Aligned_cols=212 Identities=21% Similarity=0.307 Sum_probs=173.4
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
||+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+ +.
T Consensus 1 ml~~~~l~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~-~~ 76 (243)
T 1mv5_A 1 MLSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--YQPTAGEITIDGQPIDNISLENW-RS 76 (243)
T ss_dssp CEEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS--SCCSBSCEEETTEESTTTSCSCC-TT
T ss_pred CEEEEEEEEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHH-Hh
Confidence 5899999999942 36799999999999999999999999999999999998 78999999999999876543222 23
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcccccc-----------ccCCCCCC
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN-----------RNVNEGFS 225 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~~LS 225 (325)
.++|+||++.+++ .|+.+++.+... ..... ..+.++++.+++. ++.+ +.+. +||
T Consensus 77 ~i~~v~q~~~l~~-~tv~enl~~~~~--------~~~~~----~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~-~LS 141 (243)
T 1mv5_A 77 QIGFVSQDSAIMA-GTIRENLTYGLE--------GDYTD----EDLWQVLDLAFAR-SFVENMPDQLNTEVGERGV-KIS 141 (243)
T ss_dssp TCCEECCSSCCCC-EEHHHHTTSCTT--------SCSCH----HHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSB-CCC
T ss_pred hEEEEcCCCcccc-ccHHHHHhhhcc--------CCCCH----HHHHHHHHHhChH-HHHHhCccchhchhccCcC-cCC
Confidence 4789999998877 488888754210 11111 2345566777764 3333 2333 599
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
|||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++. +|+|||+||||++.+. . ||++++|++|++++.
T Consensus 142 gGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~-~d~v~~l~~G~i~~~ 218 (243)
T 1mv5_A 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-D-ADKIYFIEKGQITGS 218 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-H-CSEEEEEETTEECCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-h-CCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999987 5899999999999875 4 799999999999988
Q ss_pred cCccH
Q 020477 306 GDASI 310 (325)
Q Consensus 306 g~~~~ 310 (325)
|+++.
T Consensus 219 g~~~~ 223 (243)
T 1mv5_A 219 GKHNE 223 (243)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 87653
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.4e-48 Score=395.28 Aligned_cols=266 Identities=19% Similarity=0.229 Sum_probs=205.2
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCc-EEEEEEEEEECCC-cccceeeeEEEEeCC
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPL-LQVTGLTAVIAES-KQEILKGVNLLVNEG 105 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ls~~y~~~-~~~iL~~vsl~i~~G 105 (325)
+..|+..+......++....+.+|+.++++.+++................ ++++||+|+|++. ++++|+|+||+|++|
T Consensus 291 ~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G 370 (595)
T 2yl4_A 291 VGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSG 370 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCC
Confidence 34566667777777888888999999888754432211111111112345 9999999999743 246999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR 185 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~ 185 (325)
|++||+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+++ .+++++|++.+|+. |+.+|+..+..
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~--~~p~~G~i~~~g~~i~~~~~~~~~~-~i~~v~Q~~~l~~~-tv~eni~~~~~--- 443 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL--YDPASGTISLDGHDIRQLNPVWLRS-KIGTVSQEPILFSC-SIAENIAYGAD--- 443 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS--SCCSEEEEEETTEETTTBCHHHHHH-SEEEECSSCCCCSS-BHHHHHHTTSS---
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--cCCCCcEEEECCEEhhhCCHHHHHh-ceEEEccCCcccCC-CHHHHHhhcCC---
Confidence 99999999999999999999998 7899999999999998877665443 58999999998875 99998865321
Q ss_pred hhcCCCCCChHHHHHhHHHHHHhcCCcc------ccccccC---CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020477 186 RKLGQPEIGPIEFYAYLYPKLERLSMKT------DFLNRNV---NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256 (325)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~---~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~ 256 (325)
. ...... +++.++++.+++.. +.++..+ +.+|||||||||+|||||+++|++|||||||++||+
T Consensus 444 --~-~~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 444 --D-PSSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp --S-TTTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred --C-ccccCH----HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 0 001122 23445555555421 1122222 245999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020477 257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 257 ~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~ 310 (325)
.+++.+.+.|+++.+ ++|+|+||||++.+. . ||+|++|++|++++.|+++.
T Consensus 517 ~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~-~d~i~~l~~G~i~~~g~~~~ 567 (595)
T 2yl4_A 517 ENEYLVQEALDRLMD-GRTVLVIAHRLSTIK-N-ANMVAVLDQGKITEYGKHEE 567 (595)
T ss_dssp HHHHHHHHHHHHHHT-TSEEEEECCCHHHHH-H-SSEEEEEETTEEEEEECSCC
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-c-CCEEEEEECCEEEEECCHHH
Confidence 999999999999866 789999999999886 4 69999999999999998764
No 37
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-49 Score=401.74 Aligned_cols=272 Identities=18% Similarity=0.280 Sum_probs=208.6
Q ss_pred ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020477 28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV 107 (325)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~ 107 (325)
+..|+..+......++....+.+|+.++++.+++..... ..........++++||+|+|++ ++++|+|+||+|++||+
T Consensus 306 ~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~-~~~~l~~isl~i~~G~~ 383 (598)
T 3qf4_B 306 FTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD-AVELREVRGEIEFKNVWFSYDK-KKPVLKDITFHIKPGQK 383 (598)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS-CCCCCSCCCCEEEEEEECCSSS-SSCSCCSEEEECCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCCCeEEEEEEEEECCC-CCccccceEEEEcCCCE
Confidence 457777788888889999999999999887654432111 1111223446999999999974 46799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020477 108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
+||+||||||||||+|+|+|+ ++|++|+|.++|+++...+....++ .+++++|++.+|+. |+.+|+..+.
T Consensus 384 ~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~~-tv~eni~~~~------ 453 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMRF--YDVDRGQILVDGIDIRKIKRSSLRS-SIGIVLQDTILFST-TVKENLKYGN------ 453 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTTS--SCCSEEEEEETTEEGGGSCHHHHHH-HEEEECTTCCCCSS-BHHHHHHSSS------
T ss_pred EEEECCCCCcHHHHHHHHhcC--cCCCCeEEEECCEEhhhCCHHHHHh-ceEEEeCCCccccc-cHHHHHhcCC------
Confidence 999999999999999999998 7899999999999998887765543 58999999998864 8988875431
Q ss_pred cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020477 188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262 (325)
Q Consensus 188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i 262 (325)
+....++..+. +.+.++.+..+.+..-...+.+||||||||++|||||+++|++||||||||+||+.+++.+
T Consensus 454 ---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i 530 (598)
T 3qf4_B 454 ---PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530 (598)
T ss_dssp ---TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 11112221111 1222333321111111111235999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020477 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319 (325)
Q Consensus 263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~ 319 (325)
.+.|+++. +|+|+|+||||++.+.. ||+|++|++|++++.|+++ ++++.++.
T Consensus 531 ~~~l~~~~-~~~t~i~itH~l~~~~~--~d~i~~l~~G~i~~~g~~~--~l~~~~~~ 582 (598)
T 3qf4_B 531 QAAMWKLM-EGKTSIIIAHRLNTIKN--ADLIIVLRDGEIVEMGKHD--ELIQKRGF 582 (598)
T ss_dssp HHHHHHHH-TTSEEEEESCCTTHHHH--CSEEEEECSSSEEECSCHH--HHHHTTCH
T ss_pred HHHHHHHc-CCCEEEEEecCHHHHHc--CCEEEEEECCEEEEECCHH--HHHhCCCH
Confidence 99999986 47899999999998864 6999999999999999875 45555553
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.5e-49 Score=361.40 Aligned_cols=208 Identities=18% Similarity=0.230 Sum_probs=175.8
Q ss_pred cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
||+++||+++|++. .+++|+++||+|+ ||+++|+||||||||||+|+|+|+ + |++|+|.++|+++... ..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl--~-p~~G~I~~~g~~~~~~--~~-- 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL--L-PYSGNIFINGMEVRKI--RN-- 72 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS--S-CCEEEEEETTEEGGGC--SC--
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC--C-CCCcEEEECCEECcch--HH--
Confidence 58999999999631 1579999999999 999999999999999999999998 7 9999999999987543 11
Q ss_pred hccEE-EeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 155 LAGLF-MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 155 ~~~i~-~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
+..++ |+||++.+ .+|+.+++...... . ... .+++.++++.+++..+..++++.+ |||||||||+
T Consensus 73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~----~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~-LSgGqkqRv~ 138 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI--GVTVNDIVYLYEEL----K---GLD----RDLFLEMLKALKLGEEILRRKLYK-LSAGQSVLVR 138 (263)
T ss_dssp CTTEEECCGGGSCT--TSBHHHHHHHHHHH----T---CCC----HHHHHHHHHHTTCCGGGGGSBGGG-SCHHHHHHHH
T ss_pred hhheEEEeCCCCcc--CCcHHHHHHHhhhh----c---chH----HHHHHHHHHHcCCChhHhcCChhh-CCHHHHHHHH
Confidence 34588 99999876 78999988764321 1 111 234677889999952456777764 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCc-EEEEEeCCEEEEEcCccH
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT-FIHIMEDGRIIKTGDASI 310 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d-~i~vl~~G~iv~~g~~~~ 310 (325)
|||||+.+|++|||||||+|||+.+++.+++.|+++.+ |||+||||++++..+ || ++++|++|++++.|+++.
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~-~d~~i~~l~~G~i~~~g~~~~ 212 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLY-KEYKAYFLVGNRLQGPISVSE 212 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGC-TTSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHh-cCceEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999864 999999999998876 69 999999999999998753
No 39
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-49 Score=381.83 Aligned_cols=213 Identities=15% Similarity=0.193 Sum_probs=179.3
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
...|+++||+|+|+.+++.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++ ++|+|.++|+++...+...++
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL--LN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC--SE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC--CC-CCeEEEECCEECCcCChHHHh
Confidence 457999999999964457899999999999999999999999999999999998 55 899999999999888766543
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC----------CC
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE----------GF 224 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----------~L 224 (325)
+ .++|+||++.+|+ .|+.+|+... . ... .+++.++++.+++. ++.++.+.+ +|
T Consensus 94 r-~ig~v~Q~~~lf~-~tv~enl~~~--------~--~~~----~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~L 156 (390)
T 3gd7_A 94 K-AFGVIPQKVFIFS-GTFRKNLDPN--------A--AHS----DQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVL 156 (390)
T ss_dssp H-TEEEESCCCCCCS-EEHHHHHCTT--------C--CSC----HHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTS
T ss_pred C-CEEEEcCCcccCc-cCHHHHhhhc--------c--ccC----HHHHHHHHHHhCCH-HHHhhcccccccccccccccC
Confidence 3 4899999999887 5888876321 1 111 23456778888885 566666542 29
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
||||||||+|||||+.+|++|||||||++||+..+..+++.|+++. .++|+|+||||++.+. . ||+|++|++|+|++
T Consensus 157 SGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~-~-aDri~vl~~G~i~~ 233 (390)
T 3gd7_A 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAML-E-CDQFLVIEENKVRQ 233 (390)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGT-T-CSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHH-h-CCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999874 4789999999987654 4 79999999999999
Q ss_pred EcCccH
Q 020477 305 TGDASI 310 (325)
Q Consensus 305 ~g~~~~ 310 (325)
.|+++.
T Consensus 234 ~g~~~e 239 (390)
T 3gd7_A 234 YDSILE 239 (390)
T ss_dssp ESSHHH
T ss_pred ECCHHH
Confidence 998753
No 40
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.3e-50 Score=356.24 Aligned_cols=203 Identities=18% Similarity=0.308 Sum_probs=170.0
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
..+|+++||+++|+ + ++|+++||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++. . +
T Consensus 8 ~~~l~~~~ls~~y~--~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~----~-~- 76 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--LKPLKGEIIYNGVPIT----K-V- 76 (214)
T ss_dssp -CEEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGG----G-G-
T ss_pred CceEEEEEEEEEeC--C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEhh----h-h-
Confidence 35899999999995 3 799999999999999999999999999999999998 6899999999999875 1 2
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
+..++|+||++.+++.+|+.+++.+.... .+. .. + ..++.++++.+++. +. ++.+. +|||||||||+|
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~----~~~-~~---~-~~~~~~~l~~~gl~-~~-~~~~~-~LSgGqkqrv~l 144 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASL----YGV-KV---N-KNEIMDALESVEVL-DL-KKKLG-ELSQGTIRRVQL 144 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHH----TTC-CC---C-HHHHHHHHHHTTCC-CT-TSBGG-GSCHHHHHHHHH
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHh----cCC-ch---H-HHHHHHHHHHcCCC-cC-CCChh-hCCHHHHHHHHH
Confidence 34589999999988889999998765321 111 11 1 24567789999996 44 66665 599999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i 302 (325)
||||+.+|++|||||||+|||+.+++.+++.|+++.++|+|||++|||++++..+ ||+++ +..|+|
T Consensus 145 araL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~-~d~v~-~~~~~~ 210 (214)
T 1sgw_A 145 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDV-NENLH-KYSTKI 210 (214)
T ss_dssp HHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSE-EEEGG-GGBC--
T ss_pred HHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEE-EeCCcc
Confidence 9999999999999999999999999999999999875688999999999998876 68875 556766
No 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7e-49 Score=352.64 Aligned_cols=204 Identities=22% Similarity=0.324 Sum_probs=161.4
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+|+++||+++|+++++++|+++||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPSEGKIKHSG------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEECS-------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CcCCccEEEECC-------------
Confidence 47999999999964346799999999999999999999999999999999998 789999999998
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHHHhcCCccc-cccccCCCCCChHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKLERLSMKTD-FLNRNVNEGFSGGER 229 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~~LSgGqr 229 (325)
.++|++|++.+++. |+.+++.+... . ....... .+.+.++.+....+ ..++... +||||||
T Consensus 70 -~i~~v~q~~~~~~~-tv~enl~~~~~-------~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~LSgGqk 136 (229)
T 2pze_A 70 -RISFCSQFSWIMPG-TIKENIIFGVS-------Y---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI-TLSGGQR 136 (229)
T ss_dssp -CEEEECSSCCCCSB-CHHHHHHTTSC-------C---CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCT-TSCHHHH
T ss_pred -EEEEEecCCcccCC-CHHHHhhccCC-------c---ChHHHHHHHHHhCcHHHHHhCcccccccccCCCC-cCCHHHH
Confidence 27899999988875 99988764310 0 0110000 11122233222111 1222333 5999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH-HhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV-NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~ 308 (325)
|||+|||||+.+|++|||||||+|||+.+++.+++.+ .++. +++|||+||||++++. . ||++++|++|++++.|++
T Consensus 137 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~-~-~d~v~~l~~G~i~~~g~~ 213 (229)
T 2pze_A 137 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-K-ADKILILHEGSSYFYGTF 213 (229)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-H-CSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHH-h-CCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999974 5664 4789999999999875 4 799999999999999976
Q ss_pred cH
Q 020477 309 SI 310 (325)
Q Consensus 309 ~~ 310 (325)
+.
T Consensus 214 ~~ 215 (229)
T 2pze_A 214 SE 215 (229)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.8e-48 Score=350.50 Aligned_cols=205 Identities=22% Similarity=0.292 Sum_probs=161.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
+|+++||+++|++.++++|+++||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g-------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEGHVAIKG-------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC--SEEEEEEEEECS--------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECC--------------
Confidence 6999999999964346799999999999999999999999999999999998 679999999998
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc----ccccccCCCCCChHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT----DFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~LSgGqrQRv 232 (325)
.++|++|++.+ +..|+.+++.+... ... ...+......+..+.++..+ ...++.+. +|||||||||
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~-------~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~LSgGqkqRv 136 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQ-------LEE-PYYRSVIQACALLPDLEILPSGDRTEIGEKGV-NLSGGQKQRV 136 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSC-------CCT-THHHHHHHHTTCHHHHTTSTTGGGSEESTTSB-CCCHHHHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCccc-------cCH-HHHHHHHHHHhhHHHHHhccccccccccCCCC-CCCHHHHHHH
Confidence 27899999864 56799988764311 000 11110001111122232211 12345554 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHH---hccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVN---GLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~---~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~ 309 (325)
+|||||+.+|++|||||||+|||+.+++.+++.|. ++. +|+|||+||||++.+. . ||++++|++|++++.|+++
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~-~-~d~v~~l~~G~i~~~g~~~ 213 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLP-Q-VDVIIVMSGGKISEMGSYQ 213 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGG-G-SSEEEEEETTEEEEEECHH
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHH-h-CCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999995 443 4789999999999875 5 6999999999999999875
Q ss_pred H
Q 020477 310 I 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 214 ~ 214 (237)
T 2cbz_A 214 E 214 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.2e-48 Score=422.01 Aligned_cols=273 Identities=19% Similarity=0.260 Sum_probs=208.2
Q ss_pred hHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEE
Q 020477 32 ALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAI 110 (325)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~l 110 (325)
+..+......+.....+.+|+.++++.+++...........+....|+++||+|+|++. +.++|+|+||+|++||.+||
T Consensus 1031 l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaI 1110 (1321)
T 4f4c_A 1031 LGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110 (1321)
T ss_dssp TTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEE
Confidence 33444555677788888899988887665543332222222334579999999999743 35799999999999999999
Q ss_pred EcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCC
Q 020477 111 MGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ 190 (325)
Q Consensus 111 vG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (325)
||+||||||||+++|.|+ ++|++|+|.+||.|+..++.+.++. .++++||+|.+|.+ |..+|+.++.. .
T Consensus 1111 VG~SGsGKSTL~~lL~rl--~~p~~G~I~iDG~di~~i~~~~lR~-~i~~V~Qdp~LF~g-TIreNI~~gld-------~ 1179 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERF--YDTLGGEIFIDGSEIKTLNPEHTRS-QIAIVSQEPTLFDC-SIAENIIYGLD-------P 1179 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTS--SCCSSSEEEETTEETTTBCHHHHHT-TEEEECSSCCCCSE-EHHHHHSSSSC-------T
T ss_pred ECCCCChHHHHHHHHhcC--ccCCCCEEEECCEEhhhCCHHHHHh-heEEECCCCEeeCc-cHHHHHhccCC-------C
Confidence 999999999999999998 8899999999999999999887654 48999999999876 88888743311 1
Q ss_pred CCCChHHHHHhH-----HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHH
Q 020477 191 PEIGPIEFYAYL-----YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265 (325)
Q Consensus 191 ~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~ 265 (325)
.+.++++.++.+ .+.++.+.-+.+..-..-+.+||||||||++|||||+++|+|||||||||+||+++++.|.+.
T Consensus 1180 ~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~ 1259 (1321)
T 4f4c_A 1180 SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259 (1321)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHH
Confidence 223334333222 223333322211111222346999999999999999999999999999999999999999999
Q ss_pred HHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 266 L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
|+++. +++|+|+|+|+++.+.. ||+|+||++|+|++.|+++ ++++++|.|
T Consensus 1260 l~~~~-~~~TvI~IAHRLsTi~~--aD~I~Vld~G~IvE~Gth~--eLl~~~g~y 1309 (1321)
T 4f4c_A 1260 LDRAR-EGRTCIVIAHRLNTVMN--ADCIAVVSNGTIIEKGTHT--QLMSEKGAY 1309 (1321)
T ss_dssp HTTTS-SSSEEEEECSSSSTTTT--CSEEEEESSSSEEEEECHH--HHHHCC---
T ss_pred HHHHc-CCCEEEEeccCHHHHHh--CCEEEEEECCEEEEECCHH--HHHhCCcHH
Confidence 99875 46899999999887765 6999999999999999765 677888854
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.5e-46 Score=408.99 Aligned_cols=274 Identities=20% Similarity=0.266 Sum_probs=214.9
Q ss_pred hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCC-CCCCCCcEEEEEEEEEECC-CcccceeeeEEEEeCCC
Q 020477 29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQ-DEKSQPLLQVTGLTAVIAE-SKQEILKGVNLLVNEGE 106 (325)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ls~~y~~-~~~~iL~~vsl~i~~Ge 106 (325)
..|+..+......++.+..+..|+.++++..+.......... .......|+++||+|+|++ .++++|+|+||+|++||
T Consensus 366 ~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~ 445 (1321)
T 4f4c_A 366 SMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQ 445 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCc
Confidence 345555666667788889999999998876544332222111 1123346999999999974 34689999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
.+||+||||||||||+++|.|+ ++|++|+|.+||.++..++...++. .++|++|+|.+|.+ |+.+|+.++
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~--~~~~~G~I~idG~~i~~~~~~~lr~-~i~~v~Q~~~Lf~~-TI~eNI~~g------ 515 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY--YDVLKGKITIDGVDVRDINLEFLRK-NVAVVSQEPALFNC-TIEENISLG------ 515 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS--SCCSEEEEEETTEETTTSCHHHHHH-HEEEECSSCCCCSE-EHHHHHHTT------
T ss_pred EEEEEecCCCcHHHHHHHhccc--cccccCcccCCCccchhccHHHHhh-cccccCCcceeeCC-chhHHHhhh------
Confidence 9999999999999999999998 8899999999999999998877554 48999999998875 888887543
Q ss_pred hcCCCCCChHHHHHhH-----HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020477 187 KLGQPEIGPIEFYAYL-----YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~ 261 (325)
.+..+.++..+.+ .+.++.+..+.+..-..-+.+||||||||++||||++++|+|||||||||+||+++++.
T Consensus 516 ---~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~ 592 (1321)
T 4f4c_A 516 ---KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGI 592 (1321)
T ss_dssp ---CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHH
T ss_pred ---cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHH
Confidence 2333344333222 23455554433333333344699999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
+.+.|.++.+ |+|+|+|||++..+.. ||+|++|++|+|++.|+++ ++++.+|.|
T Consensus 593 i~~~l~~~~~-~~T~iiiaHrls~i~~--aD~Iivl~~G~ive~Gth~--eL~~~~g~y 646 (1321)
T 4f4c_A 593 VQQALDKAAK-GRTTIIIAHRLSTIRN--ADLIISCKNGQVVEVGDHR--ALMAQQGLY 646 (1321)
T ss_dssp HHHHHHHHHT-TSEEEEECSCTTTTTT--CSEEEEEETTEEEEEECHH--HHHTTTCHH
T ss_pred HHHHHHHHhC-CCEEEEEcccHHHHHh--CCEEEEeeCCeeeccCCHH--HHHHhhhHH
Confidence 9999999864 6899999999998765 7999999999999999764 566666643
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.4e-45 Score=400.45 Aligned_cols=270 Identities=20% Similarity=0.257 Sum_probs=204.7
Q ss_pred chHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCC-CCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEE
Q 020477 31 PALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDG-QDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVH 108 (325)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~ 108 (325)
|+..+......+..+..+..|+.++++.+++........ ........|+++||+|+|++. +.++|+|+||+|++||++
T Consensus 340 ~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~ 419 (1284)
T 3g5u_A 340 SVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTV 419 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEE
Confidence 344444455667777788888888776544322211111 111223469999999999753 357999999999999999
Q ss_pred EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020477 109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL 188 (325)
Q Consensus 109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
||+||||||||||+++|+|+ ++|++|+|.++|.++..++...++. .+++++|+|.+|+. |+.+|+.++..
T Consensus 420 ~ivG~sGsGKSTl~~ll~g~--~~~~~G~i~i~g~~i~~~~~~~~r~-~i~~v~Q~~~l~~~-ti~eNi~~g~~------ 489 (1284)
T 3g5u_A 420 ALVGNSGCGKSTTVQLMQRL--YDPLDGMVSIDGQDIRTINVRYLRE-IIGVVSQEPVLFAT-TIAENIRYGRE------ 489 (1284)
T ss_dssp EEECCSSSSHHHHHHHTTTS--SCCSEEEEEETTEEGGGSCHHHHHH-HEEEECSSCCCCSS-CHHHHHHHHCS------
T ss_pred EEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEHHhCCHHHHHh-heEEEcCCCccCCc-cHHHHHhcCCC------
Confidence 99999999999999999998 7899999999999999888776543 48999999999876 99998866421
Q ss_pred CCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH
Q 020477 189 GQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263 (325)
Q Consensus 189 ~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~ 263 (325)
....++..+. +.+.++.++...+..-...+.+|||||||||+|||||+++|+|||||||||+||+++++.+.
T Consensus 490 ---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~ 566 (1284)
T 3g5u_A 490 ---DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ 566 (1284)
T ss_dssp ---SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 1222222221 23345555433222222223469999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020477 264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG 318 (325)
Q Consensus 264 ~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~ 318 (325)
+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++ ++++.++
T Consensus 567 ~~l~~~~-~~~t~i~itH~l~~i~~--~d~i~vl~~G~i~~~g~~~--~l~~~~~ 616 (1284)
T 3g5u_A 567 AALDKAR-EGRTTIVIAHRLSTVRN--ADVIAGFDGGVIVEQGNHD--ELMREKG 616 (1284)
T ss_dssp HHHHHHH-TTSEEEEECSCHHHHTT--CSEEEECSSSCCCCEECHH--HHHHTTS
T ss_pred HHHHHHc-CCCEEEEEecCHHHHHc--CCEEEEEECCEEEEECCHH--HHHhCCC
Confidence 9998875 47899999999998865 6999999999999999865 4445444
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.2e-45 Score=342.39 Aligned_cols=200 Identities=22% Similarity=0.328 Sum_probs=146.6
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++||++.+ +.+|+++||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g------------ 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPSEGKIKHSG------------ 99 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS--SCEEEEEEECCS------------
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECC------------
Confidence 4579999999853 4699999999999999999999999999999999998 789999999988
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHHHhcCCccc-cccccCCCCCChHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKLERLSMKTD-FLNRNVNEGFSGGE 228 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~~LSgGq 228 (325)
.++|+||++.+++. |+.+++. ... . ....... .+.+.++.+....+ ..++... +|||||
T Consensus 100 --~i~~v~Q~~~l~~~-tv~enl~-~~~-------~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~LSgGq 164 (290)
T 2bbs_A 100 --RISFCSQNSWIMPG-TIKENII-GVS-------Y---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI-TLSGGQ 164 (290)
T ss_dssp --CEEEECSSCCCCSS-BHHHHHH-TTC-------C---CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----C-CCCHHH
T ss_pred --EEEEEeCCCccCcc-cHHHHhh-Ccc-------c---chHHHHHHHHHhChHHHHHhccccccchhcCccC-cCCHHH
Confidence 27899999988875 9988875 310 0 0100000 11122333322111 1222233 599999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH-HhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020477 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV-NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
||||+|||||+.+|++|||||||+|||+.+++.+++.+ +++. +|+|||+||||++++. . ||++++|++|++++.|+
T Consensus 165 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~-~d~i~~l~~G~i~~~g~ 241 (290)
T 2bbs_A 165 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-K-ADKILILHEGSSYFYGT 241 (290)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-H-SSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-c-CCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999974 5554 4789999999999875 4 69999999999999998
Q ss_pred ccH
Q 020477 308 ASI 310 (325)
Q Consensus 308 ~~~ 310 (325)
++.
T Consensus 242 ~~~ 244 (290)
T 2bbs_A 242 FSE 244 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.3e-45 Score=395.32 Aligned_cols=271 Identities=20% Similarity=0.298 Sum_probs=201.4
Q ss_pred hHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCC-CCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEE
Q 020477 34 PLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDG-QDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIM 111 (325)
Q Consensus 34 ~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lv 111 (325)
.+......+.....+..|+.++++..++........ ........++++||+++|++. +.++|+|+||+|++||++||+
T Consensus 986 ~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~iv 1065 (1284)
T 3g5u_A 986 QVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALV 1065 (1284)
T ss_dssp HHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEE
Confidence 333444566777778888888877554432211111 111224569999999999742 246999999999999999999
Q ss_pred cCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCC
Q 020477 112 GKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP 191 (325)
Q Consensus 112 G~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (325)
||||||||||+++|+|+ ++|++|+|.++|+++...+....+ ..++++||++.+|. .|+.+|+..+.. ..
T Consensus 1066 G~sGsGKSTl~~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~r-~~i~~v~Q~~~l~~-~ti~eNi~~~~~-------~~ 1134 (1284)
T 3g5u_A 1066 GSSGCGKSTVVQLLERF--YDPMAGSVFLDGKEIKQLNVQWLR-AQLGIVSQEPILFD-CSIAENIAYGDN-------SR 1134 (1284)
T ss_dssp CSSSTTHHHHHHHHTTS--SCCSEEEEESSSSCTTSSCHHHHT-TSCEEEESSCCCCS-SBHHHHHTCCCS-------SC
T ss_pred CCCCCCHHHHHHHHhcC--cCCCCCEEEECCEEcccCCHHHHH-hceEEECCCCcccc-ccHHHHHhccCC-------CC
Confidence 99999999999999998 789999999999999988876554 35899999998775 588888754210 11
Q ss_pred CCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH
Q 020477 192 EIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV 266 (325)
Q Consensus 192 ~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L 266 (325)
....++..+. +.+.++.+..+.+..-...+.+|||||||||+|||||+++|+||||||||+|||+.+++.+.+.|
T Consensus 1135 ~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l 1214 (1284)
T 3g5u_A 1135 VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214 (1284)
T ss_dssp CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1222222221 22233333222111111223469999999999999999999999999999999999999999999
Q ss_pred HhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020477 267 NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320 (325)
Q Consensus 267 ~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~ 320 (325)
+++. +|+|||+||||++.+.. ||+|++|++|+|++.|+++ ++++++|.|
T Consensus 1215 ~~~~-~~~tvi~isH~l~~i~~--~dri~vl~~G~i~~~g~~~--~l~~~~g~y 1263 (1284)
T 3g5u_A 1215 DKAR-EGRTCIVIAHRLSTIQN--ADLIVVIQNGKVKEHGTHQ--QLLAQKGIY 1263 (1284)
T ss_dssp HHHS-SSSCEEEECSCTTGGGS--CSEEEEEETBEEEEEECHH--HHHHSCSHH
T ss_pred HHhC-CCCEEEEEecCHHHHHc--CCEEEEEECCEEEEECCHH--HHHhCCCHH
Confidence 8864 57899999999998854 7999999999999999765 566777743
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.3e-42 Score=345.32 Aligned_cols=203 Identities=26% Similarity=0.318 Sum_probs=171.3
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+ .+|++|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~------------- 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV--EEPTEGKVEWD------------- 416 (607)
T ss_dssp CEEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS--SCCSBSCCCCC-------------
T ss_pred ceEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEEe-------------
Confidence 468999999999963 479999999999999999999999999999999998 68999999761
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..++|+||++..++..++.+++....... . .....+.++++.+++. +..++.+.+ |||||||||+|
T Consensus 417 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~---~--------~~~~~~~~~l~~~~l~-~~~~~~~~~-LSGGe~QRv~i 482 (607)
T 3bk7_A 417 -LTVAYKPQYIKAEYEGTVYELLSKIDSSK---L--------NSNFYKTELLKPLGII-DLYDRNVED-LSGGELQRVAI 482 (607)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHHHHH---H--------HCHHHHHHTHHHHTCT-TTTTSBGGG-CCHHHHHHHHH
T ss_pred -eEEEEEecCccCCCCCcHHHHHHhhhccC---C--------CHHHHHHHHHHHcCCc-hHhcCChhh-CCHHHHHHHHH
Confidence 24889999987777788877664431110 0 0013456778899996 677888765 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeC--CEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMED--GRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~--G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||+|||+.++..++++|+++. +.|.|||+||||++++..+ ||++++|++ |+++..|+++.
T Consensus 483 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~-adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV-SDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEcCCcceEEecCCHHH
Confidence 999999999999999999999999999999999986 4588999999999999988 699999986 88888898863
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.3e-42 Score=341.87 Aligned_cols=203 Identities=26% Similarity=0.318 Sum_probs=170.7
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+ .+|++|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~i~~~------------- 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV--EEPTEGKIEWD------------- 346 (538)
T ss_dssp CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS--SCCSBCCCCCC-------------
T ss_pred CeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEEC-------------
Confidence 468999999999963 469999999999999999999999999999999998 68999999751
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..++|++|++...+..++.+++....... .. . ...+.++++.+++. +..++.+.+ |||||||||+|
T Consensus 347 -~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~---~~-----~---~~~~~~~l~~~~l~-~~~~~~~~~-LSGGe~qrv~l 412 (538)
T 1yqt_A 347 -LTVAYKPQYIKADYEGTVYELLSKIDASK---LN-----S---NFYKTELLKPLGII-DLYDREVNE-LSGGELQRVAI 412 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHHHHH---HT-----C---HHHHHHTTTTTTCG-GGTTSBGGG-CCHHHHHHHHH
T ss_pred -ceEEEEecCCcCCCCCcHHHHHHhhhccC---CC-----H---HHHHHHHHHHcCCh-hhhcCChhh-CCHHHHHHHHH
Confidence 24889999987767778877654321110 10 0 13456778899996 567788765 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeC--CEEEEEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMED--GRIIKTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~--G~iv~~g~~~~ 310 (325)
||||+.+|++|||||||+|||+.+++.++++|+++.+ .|.|||+||||++++..+ ||+|++|++ |+++..|+++.
T Consensus 413 AraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~-~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV-SDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-CSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEeCCcceEeecCCHHH
Confidence 9999999999999999999999999999999999864 488999999999999988 699999986 78888898863
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-41 Score=337.85 Aligned_cols=205 Identities=26% Similarity=0.282 Sum_probs=167.9
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
..+.++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+ .+|++|+|.+++.
T Consensus 266 ~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~---------- 330 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE--ITADEGSVTPEKQ---------- 330 (538)
T ss_dssp CCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSBCCEESSCC----------
T ss_pred ccceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCe----------
Confidence 3458999999999964 468888999999999999999999999999999998 6899999987653
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
.+++++|+.......++.+++..... ..... . ...+.++++.+++. +..++.+.+ |||||||||+
T Consensus 331 ---~i~~~~q~~~~~~~~tv~~~l~~~~~------~~~~~-~---~~~~~~~l~~~~l~-~~~~~~~~~-LSGGq~QRv~ 395 (538)
T 3ozx_A 331 ---ILSYKPQRIFPNYDGTVQQYLENASK------DALST-S---SWFFEEVTKRLNLH-RLLESNVND-LSGGELQKLY 395 (538)
T ss_dssp ---CEEEECSSCCCCCSSBHHHHHHHHCS------STTCT-T---SHHHHHTTTTTTGG-GCTTSBGGG-CCHHHHHHHH
T ss_pred ---eeEeechhcccccCCCHHHHHHHhhh------hccch-h---HHHHHHHHHHcCCH-HHhcCChhh-CCHHHHHHHH
Confidence 36788998766556788887654210 00000 1 12356678889986 567888765 9999999999
Q ss_pred HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeC--CEEEEEcCcc
Q 020477 234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMED--GRIIKTGDAS 309 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~--G~iv~~g~~~ 309 (325)
|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+ ||+|++|++ |.+...+++.
T Consensus 396 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~-aDri~vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI-ADRIIVFKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEeCCcceeccCCChH
Confidence 99999999999999999999999999999999999974 488999999999999988 699999986 5555555543
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.6e-41 Score=339.27 Aligned_cols=202 Identities=21% Similarity=0.301 Sum_probs=157.5
Q ss_pred CcEEE--------EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE---------
Q 020477 76 PLLQV--------TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV--------- 138 (325)
Q Consensus 76 ~~l~~--------~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I--------- 138 (325)
.+|++ +||+++|++ ...+|+++| +|++||++||+||||||||||+|+|+|+ ++|++|++
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl--l~p~~G~~~~~~~~~~~ 157 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGV-NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ--LIPNLCEDNDSWDNVIR 157 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS--SCCCTTTTCCCHHHHHH
T ss_pred ceEEEecCCccccCCeEEEECC-CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCC--CCCCCCccccccchhhh
Confidence 46888 899999964 225899999 9999999999999999999999999998 67999985
Q ss_pred EECCEeCCCCCHHH-HhhccEEEeccCCccCCC---cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccc
Q 020477 139 VFKGENLLEMEPEE-RSLAGLFMSFQSPVEIPG---VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD 214 (325)
Q Consensus 139 ~~~g~~i~~~~~~~-~~~~~i~~~~Q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 214 (325)
.++|.++....... .....+++++|....++. .++.+++.. ... .+++.++++.+++. +
T Consensus 158 ~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~---------~~~-------~~~~~~~L~~lgL~-~ 220 (607)
T 3bk7_A 158 AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK---------VDE-------VGKFEEVVKELELE-N 220 (607)
T ss_dssp HTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH---------TCC-------SSCHHHHHHHTTCT-T
T ss_pred eeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh---------hHH-------HHHHHHHHHHcCCC-c
Confidence 34554332110011 112346677776433221 255555421 000 12356778999996 5
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEE
Q 020477 215 FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFI 294 (325)
Q Consensus 215 ~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i 294 (325)
..++.+.+ |||||||||+|||||+.+|++|||||||++||+.++..++++|+++.++|.|||+||||++++..+ ||+|
T Consensus 221 ~~~~~~~~-LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~-adri 298 (607)
T 3bk7_A 221 VLDRELHQ-LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYL-SDVI 298 (607)
T ss_dssp GGGSBGGG-CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEE
T ss_pred hhCCChhh-CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhh-CCEE
Confidence 67888865 999999999999999999999999999999999999999999999976789999999999999887 6999
Q ss_pred EEEeCC
Q 020477 295 HIMEDG 300 (325)
Q Consensus 295 ~vl~~G 300 (325)
++|+++
T Consensus 299 ~vl~~~ 304 (607)
T 3bk7_A 299 HVVYGE 304 (607)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 999864
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.1e-40 Score=344.00 Aligned_cols=211 Identities=20% Similarity=0.299 Sum_probs=156.4
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.++|+++|++++|++.++++|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.++|..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl--l~P~sG~I~~~~~~---------- 736 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE--LLPTSGEVYTHENC---------- 736 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS--SCCSEEEEEECTTC----------
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEEcCcc----------
Confidence 468999999999974346799999999999999999999999999999999998 68999999998620
Q ss_pred hccEEEeccCCcc----CCCcchHHHHHHHHH------------------------------------------------
Q 020477 155 LAGLFMSFQSPVE----IPGVNNIDFLHMAYN------------------------------------------------ 182 (325)
Q Consensus 155 ~~~i~~~~Q~~~~----~~~~~~~~~~~~~~~------------------------------------------------ 182 (325)
.++|++|++.. ....+..+++...+.
T Consensus 737 --~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 737 --RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp --CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred --ceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 13444443210 000111111111000
Q ss_pred ----------------------------------------------HH---hhhcCCCCCChHHHHHhHHHHHHhcCCcc
Q 020477 183 ----------------------------------------------AR---RRKLGQPEIGPIEFYAYLYPKLERLSMKT 213 (325)
Q Consensus 183 ----------------------------------------------~~---~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 213 (325)
.. ....+... .....++.+.++.+|+..
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~---~~~~~~i~~~Le~lGL~~ 891 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFR---PLTRKEIEEHCSMLGLDP 891 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHHTTCCH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccc---hhHHHHHHHHHHHcCCCc
Confidence 00 00000000 001235677899999964
Q ss_pred cc-ccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCc
Q 020477 214 DF-LNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT 292 (325)
Q Consensus 214 ~~-~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d 292 (325)
+. .++.+. +|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++ +.|||+||||++++..+ ||
T Consensus 892 ~~~~~~~~~-~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l-~D 966 (986)
T 2iw3_A 892 EIVSHSRIR-GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNL-TE 966 (986)
T ss_dssp HHHHHSCGG-GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTT-CC
T ss_pred hhhcCCCcc-ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHh-CC
Confidence 33 466665 49999999999999999999999999999999999999999999876 46999999999999887 69
Q ss_pred EEEEEeCCEEEEEcC
Q 020477 293 FIHIMEDGRIIKTGD 307 (325)
Q Consensus 293 ~i~vl~~G~iv~~g~ 307 (325)
++++|++|+++..|+
T Consensus 967 rVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 967 EVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEECCBTTBCCC---
T ss_pred EEEEEECCEEEEeCC
Confidence 999999999987775
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.3e-41 Score=334.67 Aligned_cols=200 Identities=25% Similarity=0.323 Sum_probs=153.1
Q ss_pred EEE-EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE---------EECCEeCCC
Q 020477 78 LQV-TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV---------VFKGENLLE 147 (325)
Q Consensus 78 l~~-~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I---------~~~g~~i~~ 147 (325)
.++ +||+++|++ ...+|+++| +|++||++||+||||||||||+|+|+|+ ++|++|++ .++|.++..
T Consensus 21 ~~~~~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl--~~p~~G~~~~~~~~~~~~~~g~~~~~ 96 (538)
T 1yqt_A 21 EQLEEDCVHRYGV-NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ--LIPNLCGDNDSWDGVIRAFRGNELQN 96 (538)
T ss_dssp ---CCCEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS--SCCCTTTTCCSHHHHHHHTTTSTHHH
T ss_pred hhHhcCcEEEECC-ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCccCcchhhhHHhhCCccHHH
Confidence 344 699999964 225899999 9999999999999999999999999998 67999985 345543321
Q ss_pred CCHHH-HhhccEEEeccCCccCCC---cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCC
Q 020477 148 MEPEE-RSLAGLFMSFQSPVEIPG---VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG 223 (325)
Q Consensus 148 ~~~~~-~~~~~i~~~~Q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 223 (325)
..... .....+++++|....++. .++.+++.. . .. .+++.++++.+++. +..++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~------~--~~--------~~~~~~~l~~lgl~-~~~~~~~~~- 158 (538)
T 1yqt_A 97 YFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK------A--DE--------TGKLEEVVKALELE-NVLEREIQH- 158 (538)
T ss_dssp HHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH------H--CS--------SSCHHHHHHHTTCT-TTTTSBGGG-
T ss_pred HHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh------h--hH--------HHHHHHHHHHcCCC-hhhhCChhh-
Confidence 10011 112356777887543332 144444321 0 00 12356788999996 567777765
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
|||||||||+|||||+.+|++|||||||++||+.+++++++.|++++++|.|||+||||++++..+ ||+|++|++|
T Consensus 159 LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~-~dri~vl~~~ 234 (538)
T 1yqt_A 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYL-SDIIHVVYGE 234 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEcCc
Confidence 999999999999999999999999999999999999999999999976789999999999999887 6999999754
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-40 Score=330.00 Aligned_cols=199 Identities=21% Similarity=0.272 Sum_probs=161.9
Q ss_pred EEEEEEECCCcccceeeeEEEEeCC-----CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 81 TGLTAVIAESKQEILKGVNLLVNEG-----EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 81 ~~ls~~y~~~~~~iL~~vsl~i~~G-----e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
++++++|++ .+.+++++||++.+| |++||+||||||||||+|+|+|+ .+|++|+. +. .
T Consensus 350 ~~~~~~y~~-~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl--~~p~~G~~------~~--------~ 412 (608)
T 3j16_B 350 ASRAFSYPS-LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA--LKPDEGQD------IP--------K 412 (608)
T ss_dssp SSSCCEECC-EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS--SCCSBCCC------CC--------S
T ss_pred cceeEEecC-cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC--CCCCCCcC------cc--------C
Confidence 667888864 346899999999999 88999999999999999999998 67999962 11 1
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
.++++++|+.......++.+++.... ... .. . ...+.++++.+++. +..++.+.+ |||||||||+||
T Consensus 413 ~~i~~~~q~~~~~~~~tv~e~~~~~~------~~~-~~-~---~~~~~~~l~~l~l~-~~~~~~~~~-LSGGqkQRv~iA 479 (608)
T 3j16_B 413 LNVSMKPQKIAPKFPGTVRQLFFKKI------RGQ-FL-N---PQFQTDVVKPLRID-DIIDQEVQH-LSGGELQRVAIV 479 (608)
T ss_dssp CCEEEECSSCCCCCCSBHHHHHHHHC------SST-TT-S---HHHHHHTHHHHTST-TTSSSBSSS-CCHHHHHHHHHH
T ss_pred CcEEEecccccccCCccHHHHHHHHh------hcc-cc-c---HHHHHHHHHHcCCh-hhhcCChhh-CCHHHHHHHHHH
Confidence 35889999876555567776543211 011 01 1 12345678889986 577888875 999999999999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeC--CEEEEEcCccH
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMED--GRIIKTGDASI 310 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~--G~iv~~g~~~~ 310 (325)
|||+.+|+||||||||+|||+.++..++++|+++.+ .|.|||+||||++++..+ ||||++|++ |+++..|+++.
T Consensus 480 raL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~-aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL-ADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp HHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-CSEEEECEEETTTEEECCCCEE
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEeCCCCeEEecCChHH
Confidence 999999999999999999999999999999999864 589999999999999988 699999986 89999998863
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.3e-38 Score=328.81 Aligned_cols=197 Identities=19% Similarity=0.232 Sum_probs=160.0
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 155 (325)
..+...|++++|++ +.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+... .
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~-------~ 494 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQE-------E 494 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTT-------T
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcccc-------c
Confidence 35777799999964 679999999999999999999999999999999996 222 3332211 1
Q ss_pred ccEEEeccCC-ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 156 AGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 156 ~~i~~~~Q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
..+++++|++ .+++.+++.+++.. . ..+ . ..++.+.++.+|+..+..++.+.+ |||||||||+|
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~----~--~~~---~-----~~~v~~~L~~lgL~~~~~~~~~~~-LSGGqkQRvaL 559 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFE----S--GVG---T-----KEAIKDKLIEFGFTDEMIAMPISA-LSGGWKMKLAL 559 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHT----T--CSS---C-----HHHHHHHHHHTTCCHHHHHSBGGG-CCHHHHHHHHH
T ss_pred eeEEEEcccccccccCCcHHHHHHH----h--hcC---H-----HHHHHHHHHHcCCChhhhcCCccc-CCHHHHHHHHH
Confidence 2367888875 56677888887643 0 011 1 345677899999954567777765 99999999999
Q ss_pred HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCccH
Q 020477 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDASI 310 (325)
Q Consensus 235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~~~ 310 (325)
||||+.+|+||||||||+|||+.+++++.++|++ .|.|||+||||++++..+ ||++++|++|+++ +.|+.+.
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~-adrii~L~~G~iv~~~G~~~e 632 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNV-CEYIINYEGLKLRKYKGNFTE 632 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHH-CSEEEEEETTEEEEEESCHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHh-CCEEEEEECCeeecCCCCHHH
Confidence 9999999999999999999999999999999998 478999999999999888 6999999999997 5787653
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.9e-39 Score=328.95 Aligned_cols=208 Identities=16% Similarity=0.188 Sum_probs=135.2
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHH---------------------HHHhCCCCCCCC-------ccEEEECCE
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLS---------------------KVLVGHPDYEVT-------EGSVVFKGE 143 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl---------------------~~l~Gl~~~~p~-------~G~I~~~g~ 143 (325)
+.+|+||||+|++||++||+||||||||||+ +++.|+ ..|+ .|.|.++|.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l--~~~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQM--EKPDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC----------------CCCSEEESCCCEEEESSC
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccc--ccCCccceeccccceEecCc
Confidence 5699999999999999999999999999998 778886 4566 455666665
Q ss_pred eCCCCCHHHHhhccEEEeccCC-------------------ccCCCcchHHHHHHHHHHHhhhcCCC--CCChHHHHHhH
Q 020477 144 NLLEMEPEERSLAGLFMSFQSP-------------------VEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYL 202 (325)
Q Consensus 144 ~i~~~~~~~~~~~~i~~~~Q~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 202 (325)
+..... ...+++++|.+ ..++.+++.+++.............. .....+..+ .
T Consensus 109 ~~~~~~-----~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 182 (670)
T 3ux8_A 109 TTSRNP-----RSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRD-R 182 (670)
T ss_dssp C----------CCBHHHHTTCC-------------------------CC--------------------------CHH-H
T ss_pred hhhccc-----hhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHH-H
Confidence 443211 11222333332 22344566666544211100000000 000001111 2
Q ss_pred HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC--EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 020477 203 YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD--LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280 (325)
Q Consensus 203 ~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivt 280 (325)
.+.++.+++....+++.+.+ |||||||||+|||||+.+|+ +|||||||+|||+.++.+++++|++++++|.|||+||
T Consensus 183 ~~~l~~~gL~~~~~~~~~~~-LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 183 LGFLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHHTTCTTCCTTCBGGG-SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCchhhhcCCccc-CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 24588899864446777765 99999999999999999998 9999999999999999999999999987789999999
Q ss_pred CChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 281 HYRRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 281 Hd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
||++++. . ||+|++| ++|++++.|+++.
T Consensus 262 Hd~~~~~-~-~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 262 HDEDTML-A-ADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp CCHHHHH-H-CSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred CCHHHHh-h-CCEEEEecccccccCCEEEEecCHHH
Confidence 9999775 4 7999999 8999999998753
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=9.5e-38 Score=319.99 Aligned_cols=107 Identities=22% Similarity=0.347 Sum_probs=93.7
Q ss_pred hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC---EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEE
Q 020477 201 YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD---LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLL 277 (325)
Q Consensus 201 ~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~---lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvI 277 (325)
+..+.++.+++.....++.+. +|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|++++++|.|||
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPAT-TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGG-GCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCchhhccCCch-hCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 445678888886444566666 499999999999999999874 9999999999999999999999999987789999
Q ss_pred EEeCChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 278 MITHYRRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 278 ivtHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
+||||++++. . ||+|++| ++|+|++.|+++.
T Consensus 601 ~vtHd~~~~~-~-~d~i~~l~~~~g~~~G~i~~~g~~~~ 637 (670)
T 3ux8_A 601 VIEHNLDVIK-T-ADYIIDLGPEGGDRGGQIVAVGTPEE 637 (670)
T ss_dssp EECCCHHHHT-T-CSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred EEeCCHHHHH-h-CCEEEEecCCcCCCCCEEEEecCHHH
Confidence 9999999874 4 7999999 8999999998764
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-38 Score=316.92 Aligned_cols=206 Identities=24% Similarity=0.314 Sum_probs=146.7
Q ss_pred CcEEEEE--------EEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE--------
Q 020477 76 PLLQVTG--------LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV-------- 139 (325)
Q Consensus 76 ~~l~~~~--------ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~-------- 139 (325)
..|++.| ++++|+. ....|++++ .+++||++||+||||||||||+|+|+|+ ++|++|+|.
T Consensus 68 ~~i~i~nl~~~~~~~~~~~Y~~-~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gl--l~P~~G~i~~~~~~~~~ 143 (608)
T 3j16_B 68 DAIQIINLPTNLEAHVTHRYSA-NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGK--QKPNLGRFDDPPEWQEI 143 (608)
T ss_dssp CCEEEEEESSSSSTTEEEECST-TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS--SCCCTTTTCCSSCHHHH
T ss_pred cceEEecCChhhcCCeEEEECC-CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcC--CCCCCceEecccchhhh
Confidence 3566655 5788864 234677777 6899999999999999999999999998 689999873
Q ss_pred ---ECCEeCCCCCHHHHh-hccEEEeccCCccCC------CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc
Q 020477 140 ---FKGENLLEMEPEERS-LAGLFMSFQSPVEIP------GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209 (325)
Q Consensus 140 ---~~g~~i~~~~~~~~~-~~~i~~~~Q~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (325)
+.|.++......... .....+.+|....++ ..++.+++. . . .. ....++.++++.+
T Consensus 144 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~----~---~--~~-----~~~~~~~~~l~~~ 209 (608)
T 3j16_B 144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK----L---R--ME-----KSPEDVKRYIKIL 209 (608)
T ss_dssp HHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHH----H---H--CC-----SCHHHHHHHHHHH
T ss_pred hheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHh----h---h--hh-----hHHHHHHHHHHHc
Confidence 222211100000000 111122222211100 001111110 0 0 00 0123567789999
Q ss_pred CCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhh
Q 020477 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI 289 (325)
Q Consensus 210 ~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~ 289 (325)
++. +..++.+.+ |||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++|.|||+||||++++..+
T Consensus 210 gl~-~~~~~~~~~-LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~ 287 (608)
T 3j16_B 210 QLE-NVLKRDIEK-LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYL 287 (608)
T ss_dssp TCT-GGGGSCTTT-CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHH
T ss_pred CCc-chhCCChHH-CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 996 577888875 999999999999999999999999999999999999999999999988889999999999999988
Q ss_pred CCcEEEEEeCCEE
Q 020477 290 KPTFIHIMEDGRI 302 (325)
Q Consensus 290 ~~d~i~vl~~G~i 302 (325)
+|+|++|++|..
T Consensus 288 -~drv~vl~~~~~ 299 (608)
T 3j16_B 288 -SDFVCIIYGVPS 299 (608)
T ss_dssp -CSEEEEEESCTT
T ss_pred -CCEEEEEeCCcc
Confidence 699999987654
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.6e-37 Score=306.22 Aligned_cols=196 Identities=23% Similarity=0.278 Sum_probs=144.5
Q ss_pred EEEEEEECCCcccceeeeEEEE-eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE-----------EECCEeCCCC
Q 020477 81 TGLTAVIAESKQEILKGVNLLV-NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV-----------VFKGENLLEM 148 (325)
Q Consensus 81 ~~ls~~y~~~~~~iL~~vsl~i-~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I-----------~~~g~~i~~~ 148 (325)
++.+.+|+.+ -++-..|.+ ++||++||+||||||||||+|+|+|+ ++|++|+| .++|+++...
T Consensus 3 ~~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl--~~p~~G~i~~~~~~~~~~~~~~g~~i~~~ 77 (538)
T 3ozx_A 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGE--IIPNFGDPNSKVGKDEVLKRFRGKEIYNY 77 (538)
T ss_dssp CCEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTS--SCCCTTCTTSCCCHHHHHHHHTTSTTHHH
T ss_pred CCCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCccccccchhhHHhhcCCeeHHHH
Confidence 3567889753 344445554 58999999999999999999999998 78999998 5666654321
Q ss_pred CHHH-HhhccEEEeccCCccCC---CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020477 149 EPEE-RSLAGLFMSFQSPVEIP---GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF 224 (325)
Q Consensus 149 ~~~~-~~~~~i~~~~Q~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 224 (325)
.... .....+....|.....+ ..++.+++.. . .. ..++.++++.+++. ...++.+.+ |
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~------~--~~--------~~~~~~~l~~l~l~-~~~~~~~~~-L 139 (538)
T 3ozx_A 78 FKELYSNELKIVHKIQYVEYASKFLKGTVNEILTK------I--DE--------RGKKDEVKELLNMT-NLWNKDANI-L 139 (538)
T ss_dssp HHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHH------H--CC--------SSCHHHHHHHTTCG-GGTTSBGGG-C
T ss_pred HHHHhhcccchhhccchhhhhhhhccCcHHHHhhc------c--hh--------HHHHHHHHHHcCCc-hhhcCChhh-C
Confidence 1111 11223444444432211 1233332210 0 00 12355678899996 567888765 9
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
||||||||+|||||+.+|++|||||||++||+.++.++.++|+++.+ |+|||+||||++++..+ ||+|++|++|.
T Consensus 140 SgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~-~d~i~vl~~~~ 214 (538)
T 3ozx_A 140 SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYL-TDLIHIIYGES 214 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHH-CSEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhh-CCEEEEecCCc
Confidence 99999999999999999999999999999999999999999999976 89999999999999887 69999998653
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=2.1e-34 Score=298.80 Aligned_cols=222 Identities=18% Similarity=0.252 Sum_probs=155.5
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHH-HhCCCC-----C----------------
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKV-LVGHPD-----Y---------------- 131 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~-l~Gl~~-----~---------------- 131 (325)
..+.|+++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|+.. .
T Consensus 499 ~~~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~ 571 (842)
T 2vf7_A 499 PAGWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTA 571 (842)
T ss_dssp CSCEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------
T ss_pred CCceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc
Confidence 356899999974 26999999999999999999999999999996 765310 1
Q ss_pred --CCCcc-------EEEECCEeCCCCCH----------HH-H---------hhcc--------------------EEEec
Q 020477 132 --EVTEG-------SVVFKGENLLEMEP----------EE-R---------SLAG--------------------LFMSF 162 (325)
Q Consensus 132 --~p~~G-------~I~~~g~~i~~~~~----------~~-~---------~~~~--------------------i~~~~ 162 (325)
.+.+| .|.++|.++...+. .. + +..+ .+++.
T Consensus 572 ~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~ 651 (842)
T 2vf7_A 572 GSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVM 651 (842)
T ss_dssp CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEE
T ss_pred ccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccc
Confidence 12466 68899887753221 00 0 0000 00110
Q ss_pred cCCccC------------------------CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccc
Q 020477 163 QSPVEI------------------------PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR 218 (325)
Q Consensus 163 Q~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 218 (325)
.+..++ ...+..+++.+........+.. .. ...++.++++.+++....+++
T Consensus 652 ~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~----~~-~~~~~~~~L~~~gL~~~~l~~ 726 (842)
T 2vf7_A 652 VELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD----ES-AIFRALDTLREVGLGYLRLGQ 726 (842)
T ss_dssp ETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT----SH-HHHHHHHHHHHTTCTTSBTTC
T ss_pred hhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc----ch-HHHHHHHHHHHcCCCcccccC
Confidence 000111 1223333322111000000100 01 123567789999997434566
Q ss_pred cCCCCCChHHHHHHHHHHHHHhC---CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEE
Q 020477 219 NVNEGFSGGERKRNEILQLAVLG---ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295 (325)
Q Consensus 219 ~~~~~LSgGqrQRv~iAraL~~~---p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~ 295 (325)
.+. +|||||||||+|||+|+.+ |+||||||||+|||+..++.++++|++++++|.|||+||||++++ .. ||+|+
T Consensus 727 ~~~-~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~-aDrii 803 (842)
T 2vf7_A 727 PAT-ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AA-SDWVL 803 (842)
T ss_dssp CGG-GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TT-CSEEE
T ss_pred Ccc-cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-Hh-CCEEE
Confidence 665 4999999999999999996 799999999999999999999999999987799999999999999 55 79999
Q ss_pred EE------eCCEEEEEcCccH
Q 020477 296 IM------EDGRIIKTGDASI 310 (325)
Q Consensus 296 vl------~~G~iv~~g~~~~ 310 (325)
+| ++|+|++.|+++.
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~e 824 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAE 824 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHH
T ss_pred EECCCCCCCCCEEEEEcCHHH
Confidence 99 7999999998763
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-34 Score=299.54 Aligned_cols=108 Identities=23% Similarity=0.322 Sum_probs=95.2
Q ss_pred HhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEE
Q 020477 200 AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSL 276 (325)
Q Consensus 200 ~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv 276 (325)
.+..+.++.+|+....+++.+. +|||||||||+|||||+++| +||||||||+|||+.+++.+++.|++++++|.||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~-~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPAT-TLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCST-TCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCchhhccCCcc-CCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3456788999997544566665 49999999999999999876 7999999999999999999999999998778999
Q ss_pred EEEeCChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 277 LMITHYRRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 277 IivtHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
|+||||++++.. ||+|++| ++|+|++.|+++.
T Consensus 862 IvI~HdL~~i~~--ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 862 IVIEHNLDVIKN--ADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp EEECCCHHHHTT--CSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred EEEeCCHHHHHh--CCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 999999998864 7999999 8999999998864
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=5e-33 Score=268.94 Aligned_cols=210 Identities=22% Similarity=0.260 Sum_probs=143.0
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC------------------------------------CCCcc
Q 020477 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY------------------------------------EVTEG 136 (325)
Q Consensus 93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~------------------------------------~p~~G 136 (325)
.++++++|++.+| +++|+||||||||||+++|.++... .+..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 9999999999999999999776311 24578
Q ss_pred EEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcc--hHHHHHHHHH---------------HH--hhhcCCCCCC---
Q 020477 137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN--NIDFLHMAYN---------------AR--RRKLGQPEIG--- 194 (325)
Q Consensus 137 ~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~--~~~~~~~~~~---------------~~--~~~~~~~~~~--- 194 (325)
++.++|+++............+.+++|+..++.... ...++..... .. ..........
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 899999998643334444445788899876543211 1111111000 00 0000000000
Q ss_pred ------------------------------hHHHHHhHHHHHHhcCCcccc----------------------cc-----
Q 020477 195 ------------------------------PIEFYAYLYPKLERLSMKTDF----------------------LN----- 217 (325)
Q Consensus 195 ------------------------------~~~~~~~~~~~l~~~~l~~~~----------------------~~----- 217 (325)
.......+.+.++.+++.... ..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000112233445555543100 00
Q ss_pred --ccCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020477 218 --RNVNEGFSGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF 293 (325)
Q Consensus 218 --~~~~~~LSgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~ 293 (325)
+++..-|||||||||+||++|+.+| ++|||||||+|||+.+++.+.+.|+++. +|.|||+||||++++. . ||+
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~-~-~d~ 364 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAA-R-AHH 364 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHT-T-CSE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHh-h-cCe
Confidence 1111116999999999999999999 9999999999999999999999999997 5789999999998875 4 799
Q ss_pred EEEE----eCCEEEEEc
Q 020477 294 IHIM----EDGRIIKTG 306 (325)
Q Consensus 294 i~vl----~~G~iv~~g 306 (325)
+++| ++|+++...
T Consensus 365 i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 365 HYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred EEEEEEeccCCceEEEE
Confidence 9999 999987654
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2e-33 Score=292.54 Aligned_cols=221 Identities=22% Similarity=0.252 Sum_probs=151.3
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHh-CCC-----CCCCCc-------c-----
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV-GHP-----DYEVTE-------G----- 136 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~-Gl~-----~~~p~~-------G----- 136 (325)
.+.|+++|++. .+|+||||+|++||++||+|+||||||||+++|+ |.. ...+.. |
T Consensus 627 ~~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 699 (972)
T 2r6f_A 627 GRWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD 699 (972)
T ss_dssp SCEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCS
T ss_pred ceEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccc
Confidence 36799999862 3699999999999999999999999999999864 210 001122 3
Q ss_pred -EEEECCEeCCCCC---HH--------HHh-------hccEEEeccCCccC-----------------------------
Q 020477 137 -SVVFKGENLLEME---PE--------ERS-------LAGLFMSFQSPVEI----------------------------- 168 (325)
Q Consensus 137 -~I~~~g~~i~~~~---~~--------~~~-------~~~i~~~~Q~~~~~----------------------------- 168 (325)
.|.++|.++...+ +. .+. ....+|++|.+.+.
T Consensus 700 ~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~c 779 (972)
T 2r6f_A 700 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPC 779 (972)
T ss_dssp EEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEEC
T ss_pred eEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccc
Confidence 4788887764221 10 000 00123444432110
Q ss_pred -----------------CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 169 -----------------PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 169 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
...+..+++.+........+. .. .. ..+..+.++.+++....+++.+. +||||||||
T Consensus 780 e~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~--~~--~~-~~~~~~~L~~~gL~~~~l~~~~~-~LSGGekQR 853 (972)
T 2r6f_A 780 EVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SI--PK-IKRKLETLYDVGLGYMKLGQPAT-TLSGGEAQR 853 (972)
T ss_dssp TTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC--SC--HH-HHHHHHHHHHTTCSSSBTTCCGG-GCCHHHHHH
T ss_pred cccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh--cc--hh-HHHHHHHHHHcCCCcccccCchh-hCCHHHHHH
Confidence 011111111100000000000 00 11 12345788999997435677776 499999999
Q ss_pred HHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE------eCCEE
Q 020477 232 NEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM------EDGRI 302 (325)
Q Consensus 232 v~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl------~~G~i 302 (325)
|+||++|+.+| +||||||||+|||+.+++.++++|+++.++|.|||+||||++++. . ||+|++| ++|+|
T Consensus 854 v~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~-aDrIivL~p~gG~~~G~I 931 (972)
T 2r6f_A 854 VKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-T-ADYIIDLGPEGGDRGGQI 931 (972)
T ss_dssp HHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-T-CSEEEEECSSSTTSCCSE
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-h-CCEEEEEcCCCCCCCCEE
Confidence 99999999875 999999999999999999999999999877899999999999874 4 7999999 78999
Q ss_pred EEEcCccH
Q 020477 303 IKTGDASI 310 (325)
Q Consensus 303 v~~g~~~~ 310 (325)
++.|+++.
T Consensus 932 v~~g~~~e 939 (972)
T 2r6f_A 932 VAVGTPEE 939 (972)
T ss_dssp EEEESHHH
T ss_pred EEecCHHH
Confidence 99998753
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=9.6e-33 Score=288.24 Aligned_cols=106 Identities=23% Similarity=0.377 Sum_probs=93.5
Q ss_pred HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEE
Q 020477 202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLM 278 (325)
Q Consensus 202 ~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIi 278 (325)
..+.++.+++....+++.+. +|||||||||+||++|+.+| +||||||||+|||+.+++.++++|++++++|.|||+
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~-~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAP-TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGG-GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCCcccccCccc-cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999996435667765 49999999999999999875 999999999999999999999999999877899999
Q ss_pred EeCChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 279 ITHYRRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 279 vtHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
||||++++. . ||+|++| ++|++++.|+++.
T Consensus 922 isHdl~~i~-~-aDrIivL~p~gg~~~G~Iv~~G~~~e 957 (993)
T 2ygr_A 922 IEHNLDVIK-T-SDWIIDLGPEGGAGGGTVVAQGTPED 957 (993)
T ss_dssp ECCCHHHHT-T-CSEEEEEESSSTTSCSEEEEEECHHH
T ss_pred EcCCHHHHH-h-CCEEEEECCCcCCCCCEEEEecCHHH
Confidence 999999874 4 7999999 6899999998764
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-36 Score=295.32 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=149.9
Q ss_pred CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-E-EEECCEeCCCCCHH
Q 020477 74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-S-VVFKGENLLEMEPE 151 (325)
Q Consensus 74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~-I~~~g~~i~~~~~~ 151 (325)
..++++++||+++|+ ++||++++|++++|+||||||||||+|+|+|+ +.|++| + |.++|. .
T Consensus 115 ~~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl--~~p~~G~~pI~vdg~-~------ 177 (460)
T 2npi_A 115 NHTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY--ALKFNAYQPLYINLD-P------ 177 (460)
T ss_dssp CCTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT--THHHHCCCCEEEECC-T------
T ss_pred Ccchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc--ccccCCceeEEEcCC-c------
Confidence 356899999998883 69999999999999999999999999999998 678999 9 999982 1
Q ss_pred HHhhccEEEeccCCccC---CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020477 152 ERSLAGLFMSFQSPVEI---PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE 228 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq 228 (325)
+.+++++||+..++ +.+++.+++ +.... ..+... ..++.++++.+|+. +..+ +. +|||||
T Consensus 178 ---~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~---~~~~~~------~~~~~~ll~~~gl~-~~~~--~~-~LSgGq 240 (460)
T 2npi_A 178 ---QQPIFTVPGCISATPISDILDAQLPT-WGQSL---TSGATL------LHNKQPMVKNFGLE-RINE--NK-DLYLEC 240 (460)
T ss_dssp ---TSCSSSCSSCCEEEECCSCCCTTCTT-CSCBC---BSSCCS------SCCBCCEECCCCSS-SGGG--CH-HHHHHH
T ss_pred ---cCCeeeeccchhhcccccccchhhhh-ccccc---ccCcch------HHHHHHHHHHhCCC-cccc--hh-hhhHHH
Confidence 23467889987533 334555544 21100 001000 01223456777875 3333 33 599999
Q ss_pred HHHHHHHHH--HHhCCCE----EEEeC-cCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh------HHhhhCCcE--
Q 020477 229 RKRNEILQL--AVLGADL----AILDE-IDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR------LLEFIKPTF-- 293 (325)
Q Consensus 229 rQRv~iAra--L~~~p~l----LlLDE-PtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~------~~~~~~~d~-- 293 (325)
||||+|||| |+.+|++ ||||| ||++||+. .+.+.++++++ +.|+|+||||.+ ++..+ +|+
T Consensus 241 ~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~-~dr~~ 315 (460)
T 2npi_A 241 ISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTF-GPELG 315 (460)
T ss_dssp HHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHH-HHHHC
T ss_pred HHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHh-ccccc
Confidence 999999999 9999999 99999 99999999 77777777665 578999999988 66676 698
Q ss_pred ---EEEEe-CCEEEEEcCccH
Q 020477 294 ---IHIME-DGRIIKTGDASI 310 (325)
Q Consensus 294 ---i~vl~-~G~iv~~g~~~~ 310 (325)
|++|+ +|+++ .|+++.
T Consensus 316 ~~~vi~l~k~G~iv-~g~~~~ 335 (460)
T 2npi_A 316 NNNIFFIPKLDGVS-AVDDVY 335 (460)
T ss_dssp GGGEEEECCCTTCC-CCCHHH
T ss_pred CCEEEEEeCCCcEE-ECCHHH
Confidence 99999 99999 887653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=3.2e-29 Score=239.34 Aligned_cols=85 Identities=25% Similarity=0.251 Sum_probs=76.3
Q ss_pred cccCCCCCChHHHHHHHHHHHHH------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhC
Q 020477 217 NRNVNEGFSGGERKRNEILQLAV------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK 290 (325)
Q Consensus 217 ~~~~~~~LSgGqrQRv~iAraL~------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~ 290 (325)
++.+. +|||||||||+|||||+ .+|++|||||||+|||+.+++.+++.|+++.++|.|||+||||++++ ..
T Consensus 274 ~~~~~-~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~- 350 (365)
T 3qf7_A 274 ERPAR-GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EA- 350 (365)
T ss_dssp EEEGG-GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TT-
T ss_pred CCCch-hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-Hh-
Confidence 34554 49999999999999999 69999999999999999999999999999987789999999999984 44
Q ss_pred CcEEEEEeCCEEEE
Q 020477 291 PTFIHIMEDGRIIK 304 (325)
Q Consensus 291 ~d~i~vl~~G~iv~ 304 (325)
+|++++|++|++++
T Consensus 351 ~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 351 FDRKLRITGGVVVN 364 (365)
T ss_dssp CSCEEEEETTEEC-
T ss_pred CCEEEEEECCEEEe
Confidence 69999999999875
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.96 E-value=1.4e-30 Score=222.95 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=102.3
Q ss_pred eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHH
Q 020477 97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDF 176 (325)
Q Consensus 97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~ 176 (325)
|+||+|++||+++|+||||||||||+|++.+ |...+. ....+ ++++|++... ....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~--------~d~~~----g~~~~~~~~~---~~~~- 56 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVIS--------SDFCR----GLMSDDENDQ---TVTG- 56 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEE--------HHHHH----HHHCSSTTCG---GGHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEc--------cHHHH----HHhcCcccch---hhHH-
Confidence 6899999999999999999999999999654 111121 11111 2446665311 0000
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020477 177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256 (325)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~ 256 (325)
..+. .... ........+.. ...+. .. ..|||||||++||||++.+|++|+|||||++||+
T Consensus 57 --~~~~--------------~~~~-~~~~~~~~g~~-~~~~~-~~-~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~ 116 (171)
T 4gp7_A 57 --AAFD--------------VLHY-IVSKRLQLGKL-TVVDA-TN-VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQE 116 (171)
T ss_dssp --HHHH--------------HHHH-HHHHHHHTTCC-EEEES-CC-CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHH
T ss_pred --HHHH--------------HHHH-HHHHHHhCCCe-EEEEC-CC-CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHH
Confidence 0000 0000 11112233442 22232 22 3799999999999999999999999999999999
Q ss_pred H----------------HHHHHHHHHHhccCCCcEEEEEeCChhHHhhh
Q 020477 257 D----------------ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI 289 (325)
Q Consensus 257 ~----------------~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~ 289 (325)
. ..+.+.+.|++++++|.|+|+||||++++..+
T Consensus 117 ~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 117 RNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred HHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 9 66889999988876799999999999988764
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=2.7e-28 Score=229.02 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=69.5
Q ss_pred cccCCCCCChHHHHHHHHHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCc
Q 020477 217 NRNVNEGFSGGERKRNEILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT 292 (325)
Q Consensus 217 ~~~~~~~LSgGqrQRv~iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d 292 (325)
+..+. .||||||||++||+||+ .+|++|||||||++||+..++.+.+.|+++. ++.|||++||+.+.. .. ||
T Consensus 214 ~~~~~-~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~-~~-~d 289 (322)
T 1e69_A 214 DQKLS-LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVM-EA-AD 289 (322)
T ss_dssp CCBGG-GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGG-GG-CS
T ss_pred cCchh-hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHH-hh-Cc
Confidence 34444 59999999999999997 5789999999999999999999999999984 478999999997654 44 68
Q ss_pred EE--EEEeCCEE
Q 020477 293 FI--HIMEDGRI 302 (325)
Q Consensus 293 ~i--~vl~~G~i 302 (325)
++ ++|.+|..
T Consensus 290 ~~~~v~~~~g~s 301 (322)
T 1e69_A 290 LLHGVTMVNGVS 301 (322)
T ss_dssp EEEEEEESSSCE
T ss_pred eEEEEEEeCCEE
Confidence 76 77888864
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=3e-31 Score=234.46 Aligned_cols=150 Identities=14% Similarity=0.083 Sum_probs=98.2
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
+.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +.... +..++|+||++.
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl---~p~~G~I~~--~~~~~-~~~~~-~~~ig~v~q~~~----- 76 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ---ALQSKQVSR--IILTR-PAVEA-GEKLGFLPGTLN----- 76 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH---HHHTTSCSE--EEEEE-CSCCT-TCCCCSSCC--------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC---CCcCCeeee--EEecC-Cchhh-hcceEEecCCHH-----
Confidence 5689986 89999999999999999999999996 578999843 22221 11111 235788899861
Q ss_pred chHHHH-HHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCc
Q 020477 172 NNIDFL-HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250 (325)
Q Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEP 250 (325)
+++ ............... . ..+.++++. + | ||||||+|||||+.+|++||||||
T Consensus 77 ---enl~~~~~~~~~~~~~~~~--~----~~~~~~l~~-g-------------l--Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 77 ---EKIDPYLRPLHDALRDMVE--P----EVIPKLMEA-G-------------I--VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ------CTTTHHHHHHHTTTSC--T----THHHHHHHT-T-------------S--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred ---HHHHHHHHHHHHHHHHhcc--H----HHHHHHHHh-C-------------C--chHHHHHHHHHHhcCCCEEEEeCC
Confidence 111 000000000000000 0 123333332 1 3 999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020477 251 DSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF 288 (325)
Q Consensus 251 tsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~ 288 (325)
|++ +++.++++|+++ ++|+||| ||||++++..
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 999 899999999998 6688999 9999876653
No 70
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.93 E-value=8.3e-32 Score=250.56 Aligned_cols=208 Identities=13% Similarity=0.063 Sum_probs=143.2
Q ss_pred hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEE
Q 020477 30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHA 109 (325)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~ 109 (325)
.++..+......++++..+..|+.+++..+....... ........+|+++||+|+|+ .++|+++||+|++|++++
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~va 130 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GSWKSILTFFNYQNIELITF---INALKLWLKGIPKKNCLA 130 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--CcccccCCeEEEEEEEEEcC---hhhhccceEEecCCCEEE
Confidence 5566666777788888888999888876432211110 00001112589999999995 479999999999999999
Q ss_pred EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHH-HHHHHHHHHhhhc
Q 020477 110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNID-FLHMAYNARRRKL 188 (325)
Q Consensus 110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~ 188 (325)
|+||||||||||+++|+|+ + +|+|.. +++|++.++.. +..+ ++.+.
T Consensus 131 IvGpsGsGKSTLl~lL~gl--~---~G~I~~-------------------~v~q~~~lf~~-ti~~~ni~~~-------- 177 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLIHF--L---GGSVLS-------------------FANHKSHFWLA-SLADTRAALV-------- 177 (305)
T ss_dssp EECSSSSSHHHHHHHHHHH--H---TCEEEC-------------------GGGTTSGGGGG-GGTTCSCEEE--------
T ss_pred EECCCCCcHHHHHHHHhhh--c---CceEEE-------------------EecCccccccc-cHHHHhhccC--------
Confidence 9999999999999999997 4 798842 34566655442 2221 21110
Q ss_pred CCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHh
Q 020477 189 GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268 (325)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~ 268 (325)
..... .+.+.++.+ +. +.++ +..|||||||| ||||+.+|+||| |++||+.+++.+..
T Consensus 178 --~~~~~-----~~~~~i~~~-L~-~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---- 234 (305)
T 2v9p_A 178 --DDATH-----ACWRYFDTY-LR-NALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---- 234 (305)
T ss_dssp --EEECH-----HHHHHHHHT-TT-GGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----
T ss_pred --ccccH-----HHHHHHHHH-hH-ccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----
Confidence 00111 233445543 22 2233 34599999999 999999999999 99999999988752
Q ss_pred ccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020477 269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA 311 (325)
Q Consensus 269 l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~ 311 (325)
+||++..+. . +|+| +|++|++++.|+++..
T Consensus 235 ----------ltH~~~~~~-~-aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 ----------LHSRVQTFR-F-EQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ----------GTTTEEEEE-C-CCCC-CCC---CCCCCCHHHH
T ss_pred ----------HhCCHHHHH-h-CCEE-EEeCCEEEEeCCHHHH
Confidence 289887664 3 7999 9999999999987643
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=3.3e-27 Score=203.59 Aligned_cols=148 Identities=16% Similarity=0.089 Sum_probs=100.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
+++|+||||||||||+++|+|+ +. |.++|.+......... ...+++++|++. .. +++ + .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~--l~-----i~~~g~~~~~~~~~~~-~~~ig~~~~~~~---~~---~~~---~----~ 60 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER--LG-----KRAIGFWTEEVRDPET-KKRTGFRIITTE---GK---KKI---F----S 60 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HG-----GGEEEEEEEEEC-------CCEEEEEETT---CC---EEE---E----E
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hC-----CcCCCEEhhhhccccc-cceeEEEeecCc---HH---HHH---H----H
Confidence 6899999999999999999997 31 4455554322211011 123677788751 11 000 0 0
Q ss_pred hcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH-----HHhCCCEEEEeC--cCcCCCHHHH
Q 020477 187 KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL-----AVLGADLAILDE--IDSGLDVDAL 259 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra-----L~~~p~lLlLDE--PtsgLD~~~~ 259 (325)
.... . .....++.+. .||||||||++|||| |+.+|++||||| ||++||+..+
T Consensus 61 ~~~~-------------------~-~~~~~~~~~~-~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~ 119 (178)
T 1ye8_A 61 SKFF-------------------T-SKKLVGSYGV-NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFR 119 (178)
T ss_dssp ETTC-------------------C-CSSEETTEEE-CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHH
T ss_pred hhcC-------------------C-cccccccccc-CcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHH
Confidence 0000 0 0013344444 499999999999996 999999999999 9999999999
Q ss_pred HHHHHHHHhccCCCcEEEEEeC---ChhHHhhhCCcEEEEEeCCEEEE
Q 020477 260 RDVAKAVNGLLTPKNSLLMITH---YRRLLEFIKPTFIHIMEDGRIIK 304 (325)
Q Consensus 260 ~~i~~~L~~l~~~g~tvIivtH---d~~~~~~~~~d~i~vl~~G~iv~ 304 (325)
+.+.+.+.+ .+.|+|++|| |.+++..++ ++ .+|++++
T Consensus 120 ~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~-~r----~~~~i~~ 159 (178)
T 1ye8_A 120 DLVRQIMHD---PNVNVVATIPIRDVHPLVKEIR-RL----PGAVLIE 159 (178)
T ss_dssp HHHHHHHTC---TTSEEEEECCSSCCSHHHHHHH-TC----TTCEEEE
T ss_pred HHHHHHHhc---CCCeEEEEEccCCCchHHHHHH-hc----CCcEEEE
Confidence 999999875 3667888885 888888874 54 4566654
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=3.9e-29 Score=241.55 Aligned_cols=169 Identities=19% Similarity=0.201 Sum_probs=128.7
Q ss_pred ccceeeeEEEEeCCC--------------------EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH
Q 020477 92 QEILKGVNLLVNEGE--------------------VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge--------------------~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~ 151 (325)
+.+|+++||+|++|+ ++||+||||||||||+|+|+|+ .+|++|+|.++|.++..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl--~~p~~GsI~~~g~~~t~---- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI--GNEEEGAAKTGVVEVTM---- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC--CTTSTTSCCCCC----C----
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC--CCccCceEEECCeecce----
Confidence 468999999999999 9999999999999999999998 67999999999876521
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChH--HH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGG--ER 229 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG--qr 229 (325)
. ++++|++ .++.+++.++..... .. ..+.++++.+++. +. +..+ . |||| |+
T Consensus 110 ----~--~~v~q~~-~~~~ltv~D~~g~~~---------~~-------~~~~~~L~~~~L~-~~-~~~~-~-lS~G~~~k 162 (413)
T 1tq4_A 110 ----E--RHPYKHP-NIPNVVFWDLPGIGS---------TN-------FPPDTYLEKMKFY-EY-DFFI-I-ISATRFKK 162 (413)
T ss_dssp ----C--CEEEECS-SCTTEEEEECCCGGG---------SS-------CCHHHHHHHTTGG-GC-SEEE-E-EESSCCCH
T ss_pred ----e--EEecccc-ccCCeeehHhhcccc---------hH-------HHHHHHHHHcCCC-cc-CCeE-E-eCCCCccH
Confidence 1 3467775 355556554432110 00 1355678888875 22 2333 3 9999 99
Q ss_pred HHHHHHHHHHh----------CCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-----CC----CcEEEEEeCChhH--Hhh
Q 020477 230 KRNEILQLAVL----------GADLAILDEIDSGLDVDALRDVAKAVNGLL-----TP----KNSLLMITHYRRL--LEF 288 (325)
Q Consensus 230 QRv~iAraL~~----------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-----~~----g~tvIivtHd~~~--~~~ 288 (325)
||++||+||+. +|++++|||||+|||+.+++++++.|+++. +. ..+|+++||+++. +..
T Consensus 163 qrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~ 242 (413)
T 1tq4_A 163 NDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPV 242 (413)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHH
Confidence 99999999999 999999999999999999999999999874 22 3578899998876 666
Q ss_pred hCCcEE
Q 020477 289 IKPTFI 294 (325)
Q Consensus 289 ~~~d~i 294 (325)
+ +|++
T Consensus 243 L-~d~I 247 (413)
T 1tq4_A 243 L-MDKL 247 (413)
T ss_dssp H-HHHH
T ss_pred H-HHHH
Confidence 6 3655
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.92 E-value=2.4e-29 Score=221.40 Aligned_cols=181 Identities=12% Similarity=0.047 Sum_probs=107.0
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
.++++| .+|++||+++|+||||||||||+|+|+|+ ++ .|.+++.... ..+....+.+++|+||++..|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl--~~----~i~~~~~~~~-~~~~~~~~~~i~~~~q~~~~~~~~ 79 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRER--IP----NLHFSVSATT-RAPRPGEVDGVDYHFIDPTRFQQL 79 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHH--ST----TCEECCCEES-SCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhh--CC----ceEEcccccc-cCCcccccCCCeeEecCHHHHHHH
Confidence 467888 79999999999999999999999999997 32 2444432211 111111124567888987655433
Q ss_pred chHHHHHHHHHHHh--hhcCCCCCChHHHHHhHHHH------HHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC
Q 020477 172 NNIDFLHMAYNARR--RKLGQPEIGPIEFYAYLYPK------LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD 243 (325)
Q Consensus 172 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~ 243 (325)
++.+++........ ..++ ....+..+++.+. ++.+++. +..++.+. .|| ||+.+|+
T Consensus 80 ~~~~~l~~~~~~~~n~~~~g---~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~lS-----------~l~~~p~ 143 (207)
T 1znw_A 80 IDQGELLEWAEIHGGLHRSG---TLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPE-AVT-----------VFLAPPS 143 (207)
T ss_dssp HHTTCEEEEEEEGGGTEEEE---EEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTT-SEE-----------EEEECSC
T ss_pred HhcCCceeehhhcCchhhcC---CcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCC-cEE-----------EEEECCC
Confidence 33222100000000 0001 1112222333332 3333332 23344443 366 8899999
Q ss_pred EEEEeCcCcCC----CHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 244 LAILDEIDSGL----DVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 244 lLlLDEPtsgL----D~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
+++|||||+++ |+..++++.++++++.+ .|.|+|+||||++++..+ ||+|++|.
T Consensus 144 ~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~-~d~i~~l~ 202 (207)
T 1znw_A 144 WQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAE-LVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHH-HHHHHC--
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHH-HHHHHHhc
Confidence 99999999998 78899999999999864 488999999999999988 69998874
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.92 E-value=3.9e-27 Score=219.31 Aligned_cols=178 Identities=13% Similarity=0.089 Sum_probs=129.3
Q ss_pred eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH----HHH-hhccEEEeccCCc-cC
Q 020477 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP----EER-SLAGLFMSFQSPV-EI 168 (325)
Q Consensus 95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~----~~~-~~~~i~~~~Q~~~-~~ 168 (325)
+.++||++++|++++|+||||||||||+++|+|+ +.|++|+|.++|.++..... ..+ .+.++++++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~--l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--LKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHH--HHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4678999999999999999999999999999997 67889999999988755321 111 2346888999987 77
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC--EEE
Q 020477 169 PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD--LAI 246 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--lLl 246 (325)
+..++.+++..... .+. + ..+++.+|+. +..++.+. +|| |||++|||||+.+|+ +|+
T Consensus 168 ~~~~v~e~l~~~~~-----~~~-d----------~~lldt~gl~-~~~~~~~~-eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-----EGY-D----------VVLCDTSGRL-HTNYSLME-ELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp HHHHHHHHHHHHHH-----TTC-S----------EEEECCCCCS-SCCHHHHH-HHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred HHHHHHHHHHHHHH-----cCC-c----------chHHhcCCCC-cchhHHHH-HHH---HHHHHHHHhhccCCCeeEEE
Confidence 77777777654321 000 0 0124556664 33445554 499 999999999999999 999
Q ss_pred EeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeC---------ChhHHhhhCCcEEEEEeCCEEE
Q 020477 247 LDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITH---------YRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 247 LDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtH---------d~~~~~~~~~d~i~vl~~G~iv 303 (325)
|| ||+|||+..+. +++. +.|.|+|++|| .++.+... ...|.++..|+.+
T Consensus 227 LD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~-~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 227 LD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEEL-GIPVKFIGVGEAV 285 (302)
T ss_dssp EE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHH-CCCEEEEECSSSG
T ss_pred Ee-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHH-CCCEEEEeCCCCh
Confidence 99 99999998552 3333 24789999999 44455554 4678888888754
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.91 E-value=2.4e-27 Score=231.22 Aligned_cols=193 Identities=12% Similarity=0.134 Sum_probs=142.8
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE---eCCCCC--
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE---NLLEME-- 149 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~---~i~~~~-- 149 (325)
.++++++++++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+ .+|+.|.|.++|+ ++..+.
T Consensus 129 ~~~l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~--~~~~~G~i~~~G~r~~ev~~~~~~ 204 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY--TRADVIVVGLIGERGREVKDFIEN 204 (438)
T ss_dssp CCTTTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH--SCCSEEEEEEESCCHHHHHHHHHT
T ss_pred CCceEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc--cCCCeEEEEEeceecHHHHHHHHh
Confidence 357999999999963 36799999 99999999999999999999999999998 6789999999997 443211
Q ss_pred --HHHHhhccEEEeccC-CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc-cccccccCCCCCC
Q 020477 150 --PEERSLAGLFMSFQS-PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK-TDFLNRNVNEGFS 225 (325)
Q Consensus 150 --~~~~~~~~i~~~~Q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LS 225 (325)
........+++++|+ ...++.+++.+++........ ..+.. ..+++. +. .||
T Consensus 205 ~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~----------------------~~~~~v~~~ld~-l~-~lS 260 (438)
T 2dpy_A 205 ILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR----------------------DRGQHVLLIMDS-LT-RYA 260 (438)
T ss_dssp TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH----------------------TTTCEEEEEEEC-HH-HHH
T ss_pred hccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH----------------------hCCCCHHHHHHh-HH-HHH
Confidence 011122457888985 333444455444433211100 00000 012222 22 499
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC---C-Cc-----EEEEEeCChhHHhhhCCcEEEE
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT---P-KN-----SLLMITHYRRLLEFIKPTFIHI 296 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tvIivtHd~~~~~~~~~d~i~v 296 (325)
+|| |||+|| +.+|++ |+|||+.....+.+++.++.+ + |. ||+++|||++ ..+ +|++++
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~i-ad~v~~ 327 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPI-ADSARA 327 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHH-HHHHHH
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chh-hceEEE
Confidence 999 999999 889998 999999999999999999876 3 64 9999999998 445 689999
Q ss_pred EeCCEEEEEcCc
Q 020477 297 MEDGRIIKTGDA 308 (325)
Q Consensus 297 l~~G~iv~~g~~ 308 (325)
|.+|+|+.++++
T Consensus 328 l~dG~Ivl~~~~ 339 (438)
T 2dpy_A 328 ILDGHIVLSRRL 339 (438)
T ss_dssp HSSEEEEECHHH
T ss_pred EeCcEEEEeCCH
Confidence 999999988764
No 76
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.90 E-value=2.6e-23 Score=197.67 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=72.7
Q ss_pred CCChHHHHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020477 223 GFSGGERKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF 293 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~ 293 (325)
.|||||+||++||++|+ .+|+||||||||++||+..++.+++.|.++. .|+|++||+ +. . +|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~---~-~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP---G-AAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT---T-CSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc---c-CCE
Confidence 49999999999999999 8999999999999999999999999999874 699999994 43 4 799
Q ss_pred EEEEeCCEEEEEcCccH
Q 020477 294 IHIMEDGRIIKTGDASI 310 (325)
Q Consensus 294 i~vl~~G~iv~~g~~~~ 310 (325)
+++|++|+++..|+++.
T Consensus 337 i~~l~~G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQAGRFTPVADEEM 353 (359)
T ss_dssp EEEEETTEEEECCCTTT
T ss_pred EEEEECCEEEecCCHHH
Confidence 99999999999998763
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=1.9e-28 Score=217.84 Aligned_cols=178 Identities=16% Similarity=0.083 Sum_probs=108.1
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
...|+||||+|++|++++|+||||||||||+++|+|+ + | |+|.+ |.++....+....+.+++|+||++..|+.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~--~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE--F-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHH--S-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh--C-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 3479999999999999999999999999999999997 4 5 99999 776543322111123466778887554322
Q ss_pred c-hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH-----HHHHHhCCCEE
Q 020477 172 N-NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI-----LQLAVLGADLA 245 (325)
Q Consensus 172 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i-----AraL~~~p~lL 245 (325)
+ ..+++.... .....++. . ...+.++++..... .++ ..|||||+||++| ||+|+.+|+++
T Consensus 84 ~~~~~~l~~~~-~~~~~~g~----~---~~~i~~~l~~~~~~--il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEYDN-YANNFYGT----L---KSEYDKAKEQNKIC--LFE----MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEEEE-ETTEEEEE----E---HHHHHHHHHTTCEE--EEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhhhh-cccccCCC----c---HHHHHHHHhCCCcE--EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 1 000000000 00000010 0 12244445543321 222 2499999999999 89999999999
Q ss_pred EEeCcCcCCCHHHHHHHHHHHHhccC-------CCcEEEEEeCChhHHhhh
Q 020477 246 ILDEIDSGLDVDALRDVAKAVNGLLT-------PKNSLLMITHYRRLLEFI 289 (325)
Q Consensus 246 lLDEPtsgLD~~~~~~i~~~L~~l~~-------~g~tvIivtHd~~~~~~~ 289 (325)
+|||||+++|..+.+.+.+.|.++.+ ...+.|+++||++.+...
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~ 200 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQ 200 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHH
Confidence 99999999999999998888876532 235667788877766544
No 78
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.90 E-value=3.9e-24 Score=212.91 Aligned_cols=75 Identities=28% Similarity=0.382 Sum_probs=69.4
Q ss_pred CC-ChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 223 GF-SGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 223 ~L-SgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
.| ||||+|||+|||||+.+| ++|||||||+|||+.++..|.+.|+++.+ |.|||+||||++++. . ||++++|++
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~-~d~~~~~~~ 472 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-R-AHHHYKVEK 472 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-H-SSEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-h-CCEEEEEec
Confidence 47 999999999999999999 99999999999999999999999999976 789999999999876 4 699999955
Q ss_pred C
Q 020477 300 G 300 (325)
Q Consensus 300 G 300 (325)
+
T Consensus 473 ~ 473 (517)
T 4ad8_A 473 Q 473 (517)
T ss_dssp C
T ss_pred c
Confidence 4
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.90 E-value=8.9e-26 Score=214.47 Aligned_cols=177 Identities=13% Similarity=0.095 Sum_probs=128.9
Q ss_pred eeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH----HHH-hhccEEEeccCCc-cCC
Q 020477 96 KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP----EER-SLAGLFMSFQSPV-EIP 169 (325)
Q Consensus 96 ~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~----~~~-~~~~i~~~~Q~~~-~~~ 169 (325)
..+||++++|++++|+||||||||||++.|+|+ +.|++|+|.++|.++..... ..+ .+.++++++|++. .++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~--l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--LKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhh--ccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468899999999999999999999999999997 66889999999988754321 111 2346888999987 777
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC--EEEE
Q 020477 170 GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD--LAIL 247 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--lLlL 247 (325)
..++.+++..... .+. + ..+++.+|+. +..++.+. +|| +||++|||||+.+|+ +|+|
T Consensus 226 ~~tv~e~l~~~~~-----~~~-d----------~~lldt~Gl~-~~~~~~~~-eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 226 ATVLSKAVKRGKE-----EGY-D----------VVLCDTSGRL-HTNYSLME-ELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHH-----TTC-S----------EEEEECCCCS-SCCHHHHH-HHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhHHHHHHHHHh-----CCC-H----------HHHHHhcCCC-hhhhhHHH-HHH---HHHHHHHHHHhcCCCceEEEE
Confidence 6777777654321 000 0 0124556664 33444454 499 999999999999999 9999
Q ss_pred eCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCC---------hhHHhhhCCcEEEEEeCCEEE
Q 020477 248 DEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHY---------RRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 248 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd---------~~~~~~~~~d~i~vl~~G~iv 303 (325)
| ||+|||+..+. +++.+ .|.|+|++||. +..+... ...|.++..|+.+
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~-~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEEL-GIPVKFIGVGEAV 342 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHH-CCCEEEEECSSSG
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHh-CCCEEEEeCCCCh
Confidence 9 99999998653 23332 37899999993 4444444 4678888888653
No 80
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.89 E-value=4e-25 Score=209.47 Aligned_cols=194 Identities=14% Similarity=0.149 Sum_probs=135.2
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC------
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM------ 148 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~------ 148 (325)
.++++++++++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+ ..|+.|.|.+.|++....
T Consensus 43 ~~~i~~~~l~~~~~t-g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~--~~~~~g~i~~~G~~~~ev~~~i~~ 118 (347)
T 2obl_A 43 PDPLLRQVIDQPFIL-GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG--ASADIIVLALIGERGREVNEFLAL 118 (347)
T ss_dssp SCSTTCCCCCSEECC-SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH--SCCSEEEEEEESCCHHHHHHHHTT
T ss_pred CCCeeecccceecCC-CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC--CCCCEEEEEEecccHHHHHHHHHh
Confidence 457899999999973 36799999 99999999999999999999999999998 678999999988652111
Q ss_pred -CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChH
Q 020477 149 -EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGG 227 (325)
Q Consensus 149 -~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG 227 (325)
.... ....+++++|... .....+...+.. ..+.+.+...+..--..-+.+. .||+|
T Consensus 119 ~~~~~-~~~~v~~~~~~~~-----~~~~r~~~~~~~----------------~~~ae~~~~~~~~vl~~ld~~~-~lS~g 175 (347)
T 2obl_A 119 LPQST-LSKCVLVVTTSDR-----PALERMKAAFTA----------------TTIAEYFRDQGKNVLLMMDSVT-RYARA 175 (347)
T ss_dssp SCHHH-HTTEEEEEECTTS-----CHHHHHHHHHHH----------------HHHHHHHHTTTCEEEEEEETHH-HHHHH
T ss_pred hhhhh-hhceEEEEECCCC-----CHHHHHHHHHHH----------------HHHHHHHHhccccHHHHHhhHH-HHHHH
Confidence 1100 1123455555431 111111111100 0011111111110000112333 49999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC--CCc-----EEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT--PKN-----SLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
| |||++| +.+|++ |+|||+.....+.+++.++.+ +|. ||+++|||++ ..+ ||++++|.+|
T Consensus 176 ~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i-~d~v~~i~dG 242 (347)
T 2obl_A 176 A-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPI-GDEVRSILDG 242 (347)
T ss_dssp H-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHH-HHHHHHHCSE
T ss_pred H-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chh-hhheEEeeCc
Confidence 9 999999 688888 999999999999999999874 477 8999999988 455 6999999999
Q ss_pred EEEEEcCc
Q 020477 301 RIIKTGDA 308 (325)
Q Consensus 301 ~iv~~g~~ 308 (325)
+|+.+++.
T Consensus 243 ~Ivl~~~l 250 (347)
T 2obl_A 243 HIVLTREL 250 (347)
T ss_dssp EEEBCHHH
T ss_pred EEEEeCCH
Confidence 99988754
No 81
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.89 E-value=3.1e-25 Score=209.01 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=102.6
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcch
Q 020477 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNN 173 (325)
Q Consensus 94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~ 173 (325)
++++++|.+++|++++|+||||||||||+++|+|+ ++|++|.|.++|.+..... +.. .
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~--~~~~~g~i~i~~~~e~~~~-------------~~~------~- 217 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF--IPKEERIISIEDTEEIVFK-------------HHK------N- 217 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG--SCTTSCEEEEESSCCCCCS-------------SCS------S-
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC--CcCCCcEEEECCeeccccc-------------cch------h-
Confidence 78999999999999999999999999999999998 6789999999885311100 000 0
Q ss_pred HHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcC
Q 020477 174 IDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSG 253 (325)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsg 253 (325)
.+++ .. + |||+||++|||||..+|++|||||||+.
T Consensus 218 ----------------------------------~i~~----~~-----g--gg~~~r~~la~aL~~~p~ilildE~~~~ 252 (330)
T 2pt7_A 218 ----------------------------------YTQL----FF-----G--GNITSADCLKSCLRMRPDRIILGELRSS 252 (330)
T ss_dssp ----------------------------------EEEE----EC-----B--TTBCHHHHHHHHTTSCCSEEEECCCCST
T ss_pred ----------------------------------EEEE----Ee-----C--CChhHHHHHHHHhhhCCCEEEEcCCChH
Confidence 0000 00 1 8999999999999999999999999982
Q ss_pred CCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020477 254 LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 254 LD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~ 301 (325)
++.+.|+.+...+.|+|+++|+.+. ... +||+++|.+|.
T Consensus 253 -------e~~~~l~~~~~g~~tvi~t~H~~~~-~~~-~dri~~l~~g~ 291 (330)
T 2pt7_A 253 -------EAYDFYNVLCSGHKGTLTTLHAGSS-EEA-FIRLANMSSSN 291 (330)
T ss_dssp -------HHHHHHHHHHTTCCCEEEEEECSSH-HHH-HHHHHHHHHTS
T ss_pred -------HHHHHHHHHhcCCCEEEEEEcccHH-HHH-hhhheehhcCC
Confidence 3566777765544589999999884 444 58999998875
No 82
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.88 E-value=3.7e-22 Score=188.48 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=67.9
Q ss_pred cccCCCCCChHHHH------HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhC
Q 020477 217 NRNVNEGFSGGERK------RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK 290 (325)
Q Consensus 217 ~~~~~~~LSgGqrQ------Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~ 290 (325)
++.+. .||||||| |+++|+||+.+|++|||||||+|||+..+..+.+.|+++.++|.|||+||||.++ ...
T Consensus 243 ~~~~~-~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~- 319 (339)
T 3qkt_A 243 ERPLT-FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDA- 319 (339)
T ss_dssp EECGG-GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGG-
T ss_pred cCChH-HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHh-
Confidence 34454 49999999 6677788888999999999999999999999999999987778899999999765 455
Q ss_pred CcEEEEEe
Q 020477 291 PTFIHIME 298 (325)
Q Consensus 291 ~d~i~vl~ 298 (325)
||++++|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 69998874
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.88 E-value=1.3e-23 Score=194.16 Aligned_cols=184 Identities=18% Similarity=0.171 Sum_probs=116.5
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG 170 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~ 170 (325)
..+|+++++.|++|++++|+||||||||||++.|+|. ..|++| .|.+.+.+. +....... +..+++...+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~---~~~~~~~r-~~~~~~~~~~--- 92 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE---SVEETAED-LIGLHNRVRL--- 92 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS---CHHHHHHH-HHHHHTTCCG---
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC---CHHHHHHH-HHHHHcCCCh---
Confidence 4589999999999999999999999999999999997 456667 676544332 33322111 1122232211
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH-HHHHHHHHHHHhCCCEEEEeC
Q 020477 171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE-RKRNEILQLAVLGADLAILDE 249 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq-rQRv~iAraL~~~p~lLlLDE 249 (325)
...+++.... .. ..+....+.++++..++. ....+. .+|.+| +||+. |+++..+|++||+||
T Consensus 93 -~~~~~l~~~~-~~----------~~~~~~~~~~~l~~~~l~---i~~~~~-~~~~~~l~~~~~-a~~~~~~p~llilDe 155 (296)
T 1cr0_A 93 -RQSDSLKREI-IE----------NGKFDQWFDELFGNDTFH---LYDSFA-EAETDRLLAKLA-YMRSGLGCDVIILDH 155 (296)
T ss_dssp -GGCHHHHHHH-HH----------HTHHHHHHHHHHSSSCEE---EECCCC-SCCHHHHHHHHH-HHHHTTCCSEEEEEE
T ss_pred -hhccccccCC-CC----------HHHHHHHHHHHhccCCEE---EECCCC-CCCHHHHHHHHH-HHHHhcCCCEEEEcC
Confidence 1111111110 00 111222233334333321 222223 489999 66666 999999999999999
Q ss_pred cCc---C---CCH-HHHHHHHHHHHhccCC-CcEEEEEeCCh--h--------------------HHhhhCCcEEEEEeC
Q 020477 250 IDS---G---LDV-DALRDVAKAVNGLLTP-KNSLLMITHYR--R--------------------LLEFIKPTFIHIMED 299 (325)
Q Consensus 250 Pts---g---LD~-~~~~~i~~~L~~l~~~-g~tvIivtHd~--~--------------------~~~~~~~d~i~vl~~ 299 (325)
||+ + +|. .....+.+.|++++++ |.|||++||+. + .+... ||+|++|++
T Consensus 156 pt~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~-aD~vi~L~~ 234 (296)
T 1cr0_A 156 ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQL-SDTIIALER 234 (296)
T ss_dssp EC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHH-CSEEEEEEE
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhh-CcEEEEEec
Confidence 999 5 455 6778899999998755 89999999995 4 55666 799999998
Q ss_pred CEE
Q 020477 300 GRI 302 (325)
Q Consensus 300 G~i 302 (325)
|+.
T Consensus 235 ~~~ 237 (296)
T 1cr0_A 235 NQQ 237 (296)
T ss_dssp C--
T ss_pred Ccc
Confidence 875
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.88 E-value=8.4e-24 Score=224.29 Aligned_cols=170 Identities=21% Similarity=0.242 Sum_probs=117.8
Q ss_pred CCCcEEEEE-----EEEEECCCcccceeeeEEEEeC-------CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC
Q 020477 74 SQPLLQVTG-----LTAVIAESKQEILKGVNLLVNE-------GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK 141 (325)
Q Consensus 74 ~~~~l~~~~-----ls~~y~~~~~~iL~~vsl~i~~-------Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~ 141 (325)
..++|+++| |++.|.+ ++.+++|++|++++ |++++|+||||||||||+|++ |+ ..+
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~-~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl--~~~-------- 814 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFG-DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL--LAV-------- 814 (1022)
T ss_dssp SCCCEEEEEECCCC------C-CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH--HHH--------
T ss_pred CCceEEEEeccccEEEEEecC-CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH--HHH--------
Confidence 356899999 9999942 36799999999987 999999999999999999999 97 221
Q ss_pred CEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCC
Q 020477 142 GENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221 (325)
Q Consensus 142 g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 221 (325)
.++.+ +++||++.. +++.+.+ +.++|.. +.......
T Consensus 815 -----------~aqiG-~~Vpq~~~~---l~v~d~I----------------------------~~rig~~-d~~~~~~s 850 (1022)
T 2o8b_B 815 -----------MAQMG-CYVPAEVCR---LTPIDRV----------------------------FTRLGAS-DRIMSGES 850 (1022)
T ss_dssp -----------HHTTT-CCEESSEEE---ECCCSBE----------------------------EEECC----------C
T ss_pred -----------Hhhee-EEeccCcCC---CCHHHHH----------------------------HHHcCCH-HHHhhchh
Confidence 11222 267887632 2221111 0111221 11111222
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHH-HHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL-RDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
.+|+++++ +++|++++.+|+++||||||+|+|+... ..++.+|..+.++ |.++|++||+++++..+ +|++.++ +
T Consensus 851 -tf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~-~d~~~v~-~ 926 (1022)
T 2o8b_B 851 -TFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDY-SQNVAVR-L 926 (1022)
T ss_dssp -HHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHT-SSCSSEE-E
T ss_pred -hhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHh-CCcceee-c
Confidence 37877665 9999999999999999999999999874 5578888888765 88999999999998876 5877665 5
Q ss_pred CEEE
Q 020477 300 GRII 303 (325)
Q Consensus 300 G~iv 303 (325)
|++.
T Consensus 927 g~~~ 930 (1022)
T 2o8b_B 927 GHMA 930 (1022)
T ss_dssp EEEE
T ss_pred CeEE
Confidence 8877
No 85
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=7.4e-23 Score=214.10 Aligned_cols=106 Identities=21% Similarity=0.295 Sum_probs=94.0
Q ss_pred HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC--EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 020477 202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD--LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI 279 (325)
Q Consensus 202 ~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIiv 279 (325)
..+.+..+|+....+++.+.+ |||||+|||+|||||+++|+ +|||||||+|||+...++++++|++++++|.|||+|
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~-LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATT-LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGG-CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHcCCccccccCCccc-CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 345688899864346777764 99999999999999999887 999999999999999999999999998889999999
Q ss_pred eCChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 280 THYRRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 280 tHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
|||++++.. ||+|++| ++|++++.|+++.
T Consensus 523 tHd~~~~~~--aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 523 EHDEEVIRN--ADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp CCCHHHHHT--CSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred eCCHHHHHh--CCEEEEEcCCcccCCCEEEEeechhh
Confidence 999998764 7999999 8999999998764
No 86
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=2.6e-25 Score=203.94 Aligned_cols=150 Identities=12% Similarity=0.031 Sum_probs=89.7
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~ 186 (325)
.++|+||||||||||+|+|+|+ ..|++|+|.++|+++... .....+++++|++.+++.+++.+++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~--~~~~~G~i~~~g~~i~~~----~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~--- 74 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS--QVSRKASSWNREEKIPKT----VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI--- 74 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HC------------CCCC----CSCCEEEESCC----CCEEEEECCCC--CCS---
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCCccccCCcccCcc----eeeeeeEEEeecCCCcCCceEEechhhhhhc---
Confidence 4899999999999999999998 678999999999887432 1224688999999888888887765443211
Q ss_pred hcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH
Q 020477 187 KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV 266 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L 266 (325)
.. .... +.+.+.++ ..+.+.... +|||||+||+++|||++. +++||||+++||+.. .+.+
T Consensus 75 -~~--~~~~----~~i~~~~~-----~~~~~~~~~-~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l 134 (270)
T 3sop_A 75 -NN--ENCW----EPIEKYIN-----EQYEKFLKE-EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFM 134 (270)
T ss_dssp -BC--TTCS----HHHHHHHH-----HHHHHHHHH-HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHH
T ss_pred -cc--HHHH----HHHHHHHH-----HHHHhhhHH-hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHH
Confidence 00 0011 11222222 122233333 499999999999999886 999999999999987 3344
Q ss_pred HhccCCCcEEEEEeCChhHH
Q 020477 267 NGLLTPKNSLLMITHYRRLL 286 (325)
Q Consensus 267 ~~l~~~g~tvIivtHd~~~~ 286 (325)
+.+.+. .+||+|.|..+.+
T Consensus 135 ~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 135 KHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHTT-SEEEEEETTGGGS
T ss_pred HHHHhc-CcEEEEEeccccC
Confidence 444444 6888888876533
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.88 E-value=6.5e-23 Score=204.43 Aligned_cols=173 Identities=11% Similarity=0.044 Sum_probs=122.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA 156 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 156 (325)
.+++++++..|++ -..+| +..|.+|++++|+|+||||||||+++++|+ ..+ .|+ .
T Consensus 257 ~~~~~~l~~g~~~-ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~--~~~-~G~------------------~ 311 (525)
T 1tf7_A 257 RSSNVRVSSGVVR-LDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVEN--ACA-NKE------------------R 311 (525)
T ss_dssp CCCCCEECCSCHH-HHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHH--HHT-TTC------------------C
T ss_pred ccccceeecChHH-HHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHh-CCC------------------C
Confidence 3556666654421 01233 348999999999999999999999999996 334 343 0
Q ss_pred cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
.+++.+|++. ....... ..++. .. .+ +...++. .+.+..+. .|||||+||+++|+
T Consensus 312 vi~~~~ee~~-------~~l~~~~-----~~~g~---~~-------~~-~~~~g~~-~~~~~~p~-~LS~g~~q~~~~a~ 366 (525)
T 1tf7_A 312 AILFAYEESR-------AQLLRNA-----YSWGM---DF-------EE-MERQNLL-KIVCAYPE-SAGLEDHLQIIKSE 366 (525)
T ss_dssp EEEEESSSCH-------HHHHHHH-----HTTSC---CH-------HH-HHHTTSE-EECCCCGG-GSCHHHHHHHHHHH
T ss_pred EEEEEEeCCH-------HHHHHHH-----HHcCC---CH-------HH-HHhCCCE-EEEEeccc-cCCHHHHHHHHHHH
Confidence 1345566541 1111100 01111 11 11 2234442 34555555 49999999999999
Q ss_pred HHHhCCCEEEEeCcCcCCCHH-----HHHHHHHHHHhccCCCcEEEEEeCCh----------hHHhhhCCcEEEEEeCCE
Q 020477 237 LAVLGADLAILDEIDSGLDVD-----ALRDVAKAVNGLLTPKNSLLMITHYR----------RLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsgLD~~-----~~~~i~~~L~~l~~~g~tvIivtHd~----------~~~~~~~~d~i~vl~~G~ 301 (325)
++..+|++||+| ||++||.. .++.+.++++.+++.|.|||++||+. +.+..+ ||+|++|++|+
T Consensus 367 ~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~-~D~vi~L~~ge 444 (525)
T 1tf7_A 367 INDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTI-TDTIILLQYVE 444 (525)
T ss_dssp HHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTT-CSEEEEEEEEE
T ss_pred HHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCccccee-eeEEEEEEEEE
Confidence 999999999999 99999999 99999999999887799999999998 667666 79999998876
No 88
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.88 E-value=1.7e-26 Score=215.99 Aligned_cols=182 Identities=13% Similarity=0.022 Sum_probs=125.0
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEE-----------------------EeCCCEEEEEcCCCccHHHHHHHHhCCCCC
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLL-----------------------VNEGEVHAIMGKNGSGKSTLSKVLVGHPDY 131 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~-----------------------i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~ 131 (325)
...|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+ +
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl--l 114 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL--L 114 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH--H
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh--c
Confidence 44689999999994 567776664 899999999999999999999999997 5
Q ss_pred CCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCC
Q 020477 132 EVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211 (325)
Q Consensus 132 ~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 211 (325)
.|+.|. ..+++++|++.+++. ++.+++.... ..+.+ .....+.+.+.++.++-
T Consensus 115 ~~~~G~------------------~~v~~v~qd~~~~~~-t~~e~~~~~~-----~~g~~---~~~d~~~~~~~L~~l~~ 167 (312)
T 3aez_A 115 ARWDHH------------------PRVDLVTTDGFLYPN-AELQRRNLMH-----RKGFP---ESYNRRALMRFVTSVKS 167 (312)
T ss_dssp HTSTTC------------------CCEEEEEGGGGBCCH-HHHHHTTCTT-----CTTSG---GGBCHHHHHHHHHHHHT
T ss_pred cccCCC------------------CeEEEEecCccCCcc-cHHHHHHHHH-----hcCCC---hHHHHHHHHHHHHHhCC
Confidence 566552 237789999987776 7666542210 01111 11112345667777762
Q ss_pred ccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCC
Q 020477 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKP 291 (325)
Q Consensus 212 ~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~ 291 (325)
...+..+. .|||||+||+++|+|++.+|+|||||||++.+|+.. ..+.++. + ..|+|+|+.+.......
T Consensus 168 --~~~~~~~~-~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~--D-~~I~V~a~~~~~~~R~i 236 (312)
T 3aez_A 168 --GSDYACAP-VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF--D-FSLYVDARIEDIEQWYV 236 (312)
T ss_dssp --TCSCEEEE-EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC--S-EEEEEEECHHHHHHHHH
T ss_pred --CcccCCcc-cCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc--C-cEEEEECCHHHHHHHHH
Confidence 23344555 499999999999999999999999999999998621 1122322 3 45788888766433223
Q ss_pred cEEEEEeCC
Q 020477 292 TFIHIMEDG 300 (325)
Q Consensus 292 d~i~vl~~G 300 (325)
+|.+.+.+|
T Consensus 237 ~R~~~~rd~ 245 (312)
T 3aez_A 237 SRFLAMRTT 245 (312)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHhc
Confidence 454334443
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.87 E-value=4.4e-25 Score=220.10 Aligned_cols=181 Identities=14% Similarity=0.099 Sum_probs=119.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEE-EEeCCCEEEEEcCCCccHHHHHHH--HhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNL-LVNEGEVHAIMGKNGSGKSTLSKV--LVGHPDYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~--l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
+++.+++.+ |+. +.++|++++| .|++|++++|+||||||||||+++ ++|+ .+|++|.|+++|++... ....
T Consensus 12 ~~~~~~~~~-~~~-g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl--~~~~~g~i~v~g~~~~~--~~~~ 85 (525)
T 1tf7_A 12 NSEHQAIAK-MRT-MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI--IEFDEPGVFVTFEETPQ--DIIK 85 (525)
T ss_dssp --CCSSCCE-ECC-CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSSCHH--HHHH
T ss_pred Ccccccccc-ccC-CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEEeCCHH--HHHH
Confidence 455555654 443 4689999999 999999999999999999999999 6897 55689999999986211 1111
Q ss_pred hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020477 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~ 233 (325)
....+++++|++.....+.. . ....... ..++++.+++. ++.++.+. .||||
T Consensus 86 ~~~~~g~~~q~~~~~~~l~~-------~-----~~~~~~~--------~~~~l~~~~l~-~~~~~~~~-~LS~g------ 137 (525)
T 1tf7_A 86 NARSFGWDLAKLVDEGKLFI-------L-----DASPDPE--------GQEVVGGFDLS-ALIERINY-AIQKY------ 137 (525)
T ss_dssp HHGGGTCCHHHHHHTTSEEE-------E-----ECCCCSS--------CCSCCSSHHHH-HHHHHHHH-HHHHH------
T ss_pred HHHHcCCChHHhhccCcEEE-------E-----ecCcccc--------hhhhhcccCHH-HHHHHHHH-HHHHc------
Confidence 22346778887642111000 0 0000000 00011111221 12222222 25555
Q ss_pred HHHHHHhCCCEEEEeCcCc-----CCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH---------hhhCCcEEEEEeC
Q 020477 234 ILQLAVLGADLAILDEIDS-----GLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL---------EFIKPTFIHIMED 299 (325)
Q Consensus 234 iAraL~~~p~lLlLDEPts-----gLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~---------~~~~~d~i~vl~~ 299 (325)
+|++++|||||+ +||+..++.++++++++++.|.|||++||+++.+ ..+ ||+|++|++
T Consensus 138 -------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~l-aD~vi~L~~ 209 (525)
T 1tf7_A 138 -------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFV-SDNVVILRN 209 (525)
T ss_dssp -------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHH-CSEEEEEEE
T ss_pred -------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeee-eeEEEEEEE
Confidence 588999999998 4699999999999999977789999999999874 444 699999988
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.86 E-value=3.4e-23 Score=185.42 Aligned_cols=183 Identities=17% Similarity=0.098 Sum_probs=110.1
Q ss_pred cEEEEEEEEEECCCcccceeeeEE--EEeCCCEEEEEcCCCccHHHHHHHHh--CCCCCCCCccEEEECCEeCCCCCHHH
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNL--LVNEGEVHAIMGKNGSGKSTLSKVLV--GHPDYEVTEGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl--~i~~Ge~~~lvG~NGsGKSTLl~~l~--Gl~~~~p~~G~I~~~g~~i~~~~~~~ 152 (325)
++++++++..++ .|+.+ + .|++|++++|+||||||||||+++|+ |+ ..+..|.+.+++..... ...
T Consensus 6 ~~~~~~i~tg~~-----~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~--~~~~~~~~~~~~~~~~~--~~~ 75 (251)
T 2ehv_A 6 YQPVRRVKSGIP-----GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA--EEYGEPGVFVTLEERAR--DLR 75 (251)
T ss_dssp --CCCEECCSCT-----TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSSCHH--HHH
T ss_pred ccccceeecCCH-----hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEEccCCHH--HHH
Confidence 466677765553 34443 2 78999999999999999999999999 64 24566777777653211 111
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
.....+++.+|+......+++.++...... .. .. . ..... ...+.++..+.
T Consensus 76 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~--~~--~-----~~~~~-~~~~~~~~~~~ 126 (251)
T 2ehv_A 76 REMASFGWDFEKYEKEGKIAIVDGVSSVVG-------------------LP--SE--E-----KFVLE-DRFNVDNFLRY 126 (251)
T ss_dssp HHHHTTTCCHHHHHHTTSEEEEC------------------------------------------------CCHHHHHHH
T ss_pred HHHHHcCCChHHHhhcCCEEEEEccccccc-------------------cc--cc--c-----ceecc-CcccHHHHHHH
Confidence 111223445554432222222221110000 00 00 0 00000 11345565555
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCC-----HHHHHHHHHHHHhccCCCcEEEEEeCChhHH---------hhhCCcEEEEEe
Q 020477 233 EILQLAVLGADLAILDEIDSGLD-----VDALRDVAKAVNGLLTPKNSLLMITHYRRLL---------EFIKPTFIHIME 298 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD-----~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~---------~~~~~d~i~vl~ 298 (325)
..+..-..+|++++|||||++|| +..++.+.++++.+++.|+|||++||+++.+ ..++||++++|+
T Consensus 127 ~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 127 IYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 55555568999999999999998 6777779999998877799999999999887 566449999995
No 91
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.86 E-value=2.2e-21 Score=162.20 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=72.2
Q ss_pred ccccCCCCCChHHHHHHHHH------HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhh
Q 020477 216 LNRNVNEGFSGGERKRNEIL------QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI 289 (325)
Q Consensus 216 ~~~~~~~~LSgGqrQRv~iA------raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~ 289 (325)
.++.+. +||||||||++|| |||+.+|++|||||||+|||+.+++.+.+.|.++.++|.|||+||||++ +...
T Consensus 51 ~~~~~~-~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~ 128 (148)
T 1f2t_B 51 KERPLT-FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDA 128 (148)
T ss_dssp EEECGG-GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGG
T ss_pred ccCChh-HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHh
Confidence 345555 5999999999876 8999999999999999999999999999999998766889999999985 4455
Q ss_pred CCcEEEEE--eCCEE
Q 020477 290 KPTFIHIM--EDGRI 302 (325)
Q Consensus 290 ~~d~i~vl--~~G~i 302 (325)
||++++| ++|..
T Consensus 129 -~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 -ADHVIRISLENGSS 142 (148)
T ss_dssp -CSEEEEEEEETTEE
T ss_pred -CCEEEEEEcCCCeE
Confidence 6999999 45643
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.85 E-value=1.4e-21 Score=205.28 Aligned_cols=165 Identities=18% Similarity=0.141 Sum_probs=113.9
Q ss_pred CCcEEEEEEEEEECC---CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHH--------hCCCCCCCCccEEEECCE
Q 020477 75 QPLLQVTGLTAVIAE---SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL--------VGHPDYEVTEGSVVFKGE 143 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~---~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l--------~Gl~~~~p~~G~I~~~g~ 143 (325)
...+.+++...-+-. +++.+++|++|++++|++++|+||||||||||+|++ .|. +-|.++..
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~--~vpa~~~~----- 701 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGC--FVPCESAE----- 701 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTC--CBSEEEEE-----
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCC--cccccccc-----
Confidence 345777776533311 235689999999999999999999999999999999 443 22222110
Q ss_pred eCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCC
Q 020477 144 NLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG 223 (325)
Q Consensus 144 ~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 223 (325)
+..+ . .++.++++... . ...
T Consensus 702 --------------~~~~-d----------------------------------------~i~~~ig~~d~-l----~~~ 721 (934)
T 3thx_A 702 --------------VSIV-D----------------------------------------CILARVGAGDS-Q----LKG 721 (934)
T ss_dssp --------------EECC-S----------------------------------------EEEEECC-------------
T ss_pred --------------chHH-H----------------------------------------HHHHhcCchhh-H----HHh
Confidence 0000 0 00111222110 1 124
Q ss_pred CChHHHHHHHHHHHH--HhCCCEEEEeCcCcCCCHHHHHHH-HHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020477 224 FSGGERKRNEILQLA--VLGADLAILDEIDSGLDVDALRDV-AKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMED 299 (325)
Q Consensus 224 LSgGqrQRv~iAraL--~~~p~lLlLDEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~ 299 (325)
+|+|+++++.+|+++ +.+|+++||||||+|||+.....+ ..++..+.+ .|.++|++||+.++.. + +|++..+.+
T Consensus 722 lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~-l-ad~~~~v~n 799 (934)
T 3thx_A 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTA-L-ANQIPTVNN 799 (934)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGG-G-GGTCTTEEE
T ss_pred HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHH-H-hcccceeEe
Confidence 888888888888888 899999999999999999988888 666677764 4889999999988765 4 588878899
Q ss_pred CEEEEEcCc
Q 020477 300 GRIIKTGDA 308 (325)
Q Consensus 300 G~iv~~g~~ 308 (325)
|++...++.
T Consensus 800 g~v~~~~~~ 808 (934)
T 3thx_A 800 LHVTALTTE 808 (934)
T ss_dssp EEEEEEEET
T ss_pred eEEEEEecC
Confidence 998876654
No 93
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.84 E-value=1.5e-20 Score=182.92 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=66.4
Q ss_pred CCChHHHHHHHHHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 223 GFSGGERKRNEILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
.||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++.++|++||+...+. . ||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~-~-~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-K-SDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-T-CSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-h-CCEEEEEE
Confidence 39999999999999999 579999999999999999999999999998766789999999977654 4 68998875
No 94
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.84 E-value=4.3e-21 Score=200.10 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=92.4
Q ss_pred HHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020477 204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281 (325)
Q Consensus 204 ~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtH 281 (325)
+.+..+|+..-.+++.+.+ |||||+|||+||++|..+| ++|||||||+|||+...+++++.|+++++.|.|||+|+|
T Consensus 486 ~~L~~vGL~~l~ldR~~~t-LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeH 564 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGG-CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHhhhCCCCccccCCcccc-CCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 3578889863336777765 9999999999999999985 999999999999999999999999999888999999999
Q ss_pred ChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 282 YRRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 282 d~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
|++++. . ||+|++| ++|++++.|+++.
T Consensus 565 dl~~i~-~-ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 565 DEDTML-A-ADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp CHHHHH-S-CSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred CHHHHH-h-CCEEEEeCCCccCCCCEEEEecCHHH
Confidence 999876 4 7999999 7999999998763
No 95
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.84 E-value=9.6e-23 Score=183.74 Aligned_cols=170 Identities=12% Similarity=0.044 Sum_probs=98.7
Q ss_pred CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCC
Q 020477 90 SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIP 169 (325)
Q Consensus 90 ~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~ 169 (325)
+++.+|+|+||++++|+++||+||||||||||+++|+|+ + |.+.++ . ....+++++|+. +++
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~--l----G~~~~~----------~-~~~~i~~v~~d~-~~~ 71 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL--L----GQNEVE----------Q-RQRKVVILSQDR-FYK 71 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHH--H----TGGGSC----------G-GGCSEEEEEGGG-GBC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH--h----chhccc----------c-cCCceEEEeCCc-Ccc
Confidence 346799999999999999999999999999999999995 2 544443 1 123477889985 566
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeC
Q 020477 170 GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDE 249 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDE 249 (325)
.++..++...... ....... .......+.+.++.+. +..+..+.. ||+||+||+++ ++++.+|+++||||
T Consensus 72 ~l~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~L~~l~---~~~~~~~~~-ls~g~~~r~~~-~~~~~~~~~lilDg 141 (245)
T 2jeo_A 72 VLTAEQKAKALKG----QYNFDHP-DAFDNDLMHRTLKNIV---EGKTVEVPT-YDFVTHSRLPE-TTVVYPADVVLFEG 141 (245)
T ss_dssp CCCHHHHHHHHTT----CCCTTSG-GGBCHHHHHHHHHHHH---TTCCEEECC-EETTTTEECSS-CEEECCCSEEEEEC
T ss_pred ccCHhHhhhhhcc----CCCCCCc-ccccHHHHHHHHHHHH---CCCCeeccc-ccccccCccCc-eEEecCCCEEEEeC
Confidence 6777665533211 0111000 0001122334444432 223445554 99999999988 68888999999999
Q ss_pred cCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCC-hhHHhhhCCcEEEEEeCCE
Q 020477 250 IDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY-RRLLEFIKPTFIHIMEDGR 301 (325)
Q Consensus 250 PtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd-~~~~~~~~~d~i~vl~~G~ 301 (325)
|....|.. +.++. +.+|+++||+ .+....+ ++.+ ++|+
T Consensus 142 ~~~~~~~~--------l~~~~--~~~i~v~th~~~~~~r~~-~r~~---~~G~ 180 (245)
T 2jeo_A 142 ILVFYSQE--------IRDMF--HLRLFVDTDSDVRLSRRV-LRDV---RRGR 180 (245)
T ss_dssp TTTTTSHH--------HHTTC--SEEEEEECCHHHHHHHHH-HHHT---C---
T ss_pred ccccccHH--------HHHhc--CeEEEEECCHHHHHHHHH-HHHH---HcCC
Confidence 98888764 23332 6799999996 4444444 3433 5564
No 96
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.83 E-value=6.6e-22 Score=207.14 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=102.5
Q ss_pred CcEEEEEEEEEE-----CCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH
Q 020477 76 PLLQVTGLTAVI-----AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150 (325)
Q Consensus 76 ~~l~~~~ls~~y-----~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 150 (325)
..+.+++...-+ +.+++.+++|++|++++|++++|+||||||||||+|+++++. +.+..|.
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~-~~aq~g~------------- 704 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT-IMAQIGS------------- 704 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH-HHHHHTC-------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH-HHhhcCc-------------
Confidence 357777654322 112467999999999999999999999999999999998741 1111111
Q ss_pred HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020477 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230 (325)
Q Consensus 151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ 230 (325)
++++....+.... .++.+++.. +...+... .+|+||+|
T Consensus 705 ---------~vpa~~~~i~~~d-------------------------------~i~~~ig~~-d~l~~~~s-tfs~em~~ 742 (918)
T 3thx_B 705 ---------YVPAEEATIGIVD-------------------------------GIFTRMGAA-DNIYKGRS-TFMEELTD 742 (918)
T ss_dssp ---------CBSSSEEEEECCS-------------------------------EEEEEC-----------C-CHHHHHHH
T ss_pred ---------cccchhhhhhHHH-------------------------------HHHHhCChH-HHHHHhHH-HhhHHHHH
Confidence 1111100000000 001111111 11222233 49999999
Q ss_pred HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH-HHHHhccC-CCcEEEEEeCChhHHh
Q 020477 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVA-KAVNGLLT-PKNSLLMITHYRRLLE 287 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~-~~L~~l~~-~g~tvIivtHd~~~~~ 287 (325)
++.|+++ +.+|+++||||||+|||+.....+. .++..+.+ .|.|+|++|||++++.
T Consensus 743 ~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 743 TAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 9999998 8999999999999999999998887 67777754 5899999999988764
No 97
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.83 E-value=8.2e-21 Score=198.59 Aligned_cols=104 Identities=25% Similarity=0.325 Sum_probs=92.0
Q ss_pred HHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhC--CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020477 204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG--ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281 (325)
Q Consensus 204 ~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~--p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtH 281 (325)
+.+..+|+..-.+++.+.+ |||||+|||+||++|..+ |++|||||||+|||+...+++++.|+++++.|.|||+|+|
T Consensus 503 ~~L~~vGL~~l~l~r~~~t-LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeH 581 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAAT-LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGG-CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHhhCCCCccccCCCccc-CCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 3478888863236777764 999999999999999998 5999999999999999999999999999878999999999
Q ss_pred ChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 282 YRRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 282 d~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
|++++. . ||+|++| ++|++++.|+++.
T Consensus 582 dl~~i~-~-ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 582 DEDTIE-H-ADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp CHHHHH-T-CSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred CHHHHH-h-CCEEEEecCccccCCCEEEEeeCHHH
Confidence 999876 4 7999999 7999999998764
No 98
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.82 E-value=2.1e-20 Score=194.19 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=91.8
Q ss_pred HHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020477 205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY 282 (325)
Q Consensus 205 ~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd 282 (325)
.+..+|+..-.+++.+.+ |||||+|||+||++|+.+| ++|||||||++||+...++++++|+++++.|.|||+|+||
T Consensus 362 ~L~~vGL~~l~l~r~~~t-LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPT-LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTSBTTCBGGG-SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHHhCCCCcCCccCCcCc-CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 578899863236777764 9999999999999999999 5999999999999999999999999998889999999999
Q ss_pred hhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020477 283 RRLLEFIKPTFIHIM------EDGRIIKTGDASI 310 (325)
Q Consensus 283 ~~~~~~~~~d~i~vl------~~G~iv~~g~~~~ 310 (325)
++++. . ||+|++| ++|++++.|+++.
T Consensus 441 l~~l~-~-aD~ii~lgpgaG~~~G~iv~~g~~~~ 472 (842)
T 2vf7_A 441 LDVIR-R-ADWLVDVGPEAGEKGGEILYSGPPEG 472 (842)
T ss_dssp HHHHT-T-CSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred HHHHH-h-CCEEEEeCCCcccCCCEEEEecCHHH
Confidence 99775 4 7999999 7999999998763
No 99
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.82 E-value=1.1e-21 Score=178.91 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=97.7
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-ccEEEECCEeCCCCCHHHHhh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-EGSVVFKGENLLEMEPEERSL 155 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-~G~I~~~g~~i~~~~~~~~~~ 155 (325)
.+++++|++ + ++|+++| +++|++++|+||||||||||+++|+|+ ++|+ +|+|.++|.++..
T Consensus 5 ~~~l~~l~~--~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~-------- 66 (261)
T 2eyu_A 5 IPEFKKLGL--P----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEY-------- 66 (261)
T ss_dssp -CCGGGSSC--C----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCS--------
T ss_pred CCChHHCCC--H----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCccee--------
Confidence 345566653 2 4899999 999999999999999999999999997 6677 8999998876421
Q ss_pred ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020477 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
++|+...+ ... ..+++.. . .| |++||
T Consensus 67 -----~~~~~~~~-------------------v~q----------------~~~gl~~-------~-~l------~~~la 92 (261)
T 2eyu_A 67 -----VFKHKKSI-------------------VNQ----------------REVGEDT-------K-SF------ADALR 92 (261)
T ss_dssp -----CCCCSSSE-------------------EEE----------------EEBTTTB-------S-CH------HHHHH
T ss_pred -----ecCCccee-------------------eeH----------------HHhCCCH-------H-HH------HHHHH
Confidence 22322100 000 0122211 1 13 89999
Q ss_pred HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEE
Q 020477 236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI 296 (325)
Q Consensus 236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~v 296 (325)
+||..+|++||+|||| |+++...+++. . ..|.+|++++|+.+.. .. +|++++
T Consensus 93 ~aL~~~p~illlDEp~---D~~~~~~~l~~---~-~~g~~vl~t~H~~~~~-~~-~dri~~ 144 (261)
T 2eyu_A 93 AALREDPDVIFVGEMR---DLETVETALRA---A-ETGHLVFGTLHTNTAI-DT-IHRIVD 144 (261)
T ss_dssp HHHHHCCSEEEESCCC---SHHHHHHHHHH---H-HTTCEEEEEECCSSHH-HH-HHHHHH
T ss_pred HHHhhCCCEEEeCCCC---CHHHHHHHHHH---H-ccCCEEEEEeCcchHH-HH-HHHHhh
Confidence 9999999999999999 99887655443 2 3588999999997743 33 355433
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.82 E-value=6.3e-21 Score=196.88 Aligned_cols=146 Identities=25% Similarity=0.213 Sum_probs=104.8
Q ss_pred CCcEEEEEEEEEECC---CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH
Q 020477 75 QPLLQVTGLTAVIAE---SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~---~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~ 151 (325)
...+++++.. ++- +++.+++|+||+ |++++|+||||||||||+|+|+|+. ..++.|.+. . .
T Consensus 548 ~~~i~i~~~r--HP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~-~~~~~G~~v------p----a 611 (765)
T 1ewq_A 548 GDRLQIRAGR--HPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIA-LLAQVGSFV------P----A 611 (765)
T ss_dssp SSSEEEEEEC--CTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHH-HHHTTTCCB------S----S
T ss_pred CCcEEEEEeE--CceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhh-hhcccCcee------e----h
Confidence 3468888873 432 236789999999 9999999999999999999999962 124566542 0 0
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
. ...+++++| +++.+++.+ + +..++|+|++|+
T Consensus 612 ~--~~~i~~v~~---i~~~~~~~d--------------------------------------~-----l~~g~S~~~~e~ 643 (765)
T 1ewq_A 612 E--EAHLPLFDG---IYTRIGASD--------------------------------------D-----LAGGKSTFMVEM 643 (765)
T ss_dssp S--EEEECCCSE---EEEECCC-------------------------------------------------CCSHHHHHH
T ss_pred h--ccceeeHHH---hhccCCHHH--------------------------------------H-----HHhcccHHHHHH
Confidence 0 112444433 111111110 0 001389999999
Q ss_pred HHHHHHH--HhCCCEEEEeCc---CcCCCHHHH-HHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020477 232 NEILQLA--VLGADLAILDEI---DSGLDVDAL-RDVAKAVNGLLTPKNSLLMITHYRRLLE 287 (325)
Q Consensus 232 v~iAraL--~~~p~lLlLDEP---tsgLD~~~~-~~i~~~L~~l~~~g~tvIivtHd~~~~~ 287 (325)
+.+|+++ +.+|+++||||| |++||..+. ..+++.|.+ .|.|+|++|||.++..
T Consensus 644 ~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 644 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT
T ss_pred HHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH
Confidence 9999999 999999999999 999999886 578888876 4789999999988764
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.80 E-value=3.7e-20 Score=163.40 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=110.9
Q ss_pred ccceeeeEE-EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH-hh-ccEEEeccCCccC
Q 020477 92 QEILKGVNL-LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER-SL-AGLFMSFQSPVEI 168 (325)
Q Consensus 92 ~~iL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~-~~-~~i~~~~Q~~~~~ 168 (325)
.+.|+++.. .+++|++++|+||||||||||++.|++. ..+..|.|.+.+.+. +.... .. ..+++.+|.....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEK 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTT
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhC
Confidence 567888887 8999999999999999999999999985 345667777765432 12111 10 0111111211000
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC--EEE
Q 020477 169 PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD--LAI 246 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--lLl 246 (325)
.+.. .. .. ...++ . ... ....|.++.++...+.+...+|+ ++|
T Consensus 84 -~~~~--------------~~--~~------------~~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lli 128 (235)
T 2w0m_A 84 -KLII--------------ID--AL------------MKEKE-D-QWS----LVNLTPEELVNKVIEAKQKLGYGKARLV 128 (235)
T ss_dssp -TEEE--------------EE--CC------------C-----C-TTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred -CEEE--------------Ee--cc------------ccccC-c-eee----ecCCCHHHHHHHHHHHHHhhCCCceEEE
Confidence 0000 00 00 00000 0 011 11359999999988888888999 999
Q ss_pred EeCcCcCC--CHHHHHHHHHHHHhccC-CCcEEEEEeCCh--------hHHhhhCCcEEEEEeCC
Q 020477 247 LDEIDSGL--DVDALRDVAKAVNGLLT-PKNSLLMITHYR--------RLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 247 LDEPtsgL--D~~~~~~i~~~L~~l~~-~g~tvIivtHd~--------~~~~~~~~d~i~vl~~G 300 (325)
+||||+++ |+.....+++.|+++++ .|.|||++||+. ..+..+ ||+|++|++.
T Consensus 129 lDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~-~d~vi~l~~~ 192 (235)
T 2w0m_A 129 IDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV-ADGIIRFRRM 192 (235)
T ss_dssp EETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH-CSEEEEEEEE
T ss_pred EECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee-eeEEEEEEEE
Confidence 99999888 99999999999999864 489999999998 346666 6999999753
No 102
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.80 E-value=4.4e-21 Score=169.52 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=91.5
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-----ccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHH
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-----EGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNID 175 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-----~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~ 175 (325)
.|++|++++|+||||||||||+++|+|+...++. .|.+++++++. ..... +.+++|...++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~~~~-----i~~~~~~~~~~------- 86 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FRPER-----IREIAQNRGLD------- 86 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHH-----HHHHHHHTTSC-------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CCHHH-----HHHHHHHcCCC-------
Confidence 6999999999999999999999999995223333 33566665431 11110 11112221110
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH-HHHHHHHHHHHh-------CCCEEEE
Q 020477 176 FLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE-RKRNEILQLAVL-------GADLAIL 247 (325)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq-rQRv~iAraL~~-------~p~lLlL 247 (325)
.. ...+.+.+. . .+++++ ++.+..+++++. +|+++++
T Consensus 87 -------------------~~-------~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llil 131 (231)
T 4a74_A 87 -------------------PD-------EVLKHIYVA--------R-AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 131 (231)
T ss_dssp -------------------HH-------HHHHTEEEE--------E-CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEE
T ss_pred -------------------HH-------HHhhcEEEE--------e-cCChHHHHHHHHHHHHHHHHhcccCCceeEEEE
Confidence 00 112222111 0 134443 444666666666 9999999
Q ss_pred eCcCcCCCHH-------H-----HHHHHHHHHhccCC-CcEEEEEeCChh----HHhhhCCcEEEEEeCC
Q 020477 248 DEIDSGLDVD-------A-----LRDVAKAVNGLLTP-KNSLLMITHYRR----LLEFIKPTFIHIMEDG 300 (325)
Q Consensus 248 DEPtsgLD~~-------~-----~~~i~~~L~~l~~~-g~tvIivtHd~~----~~~~~~~d~i~vl~~G 300 (325)
||||+++|+. . ...+++.|.++.++ |.|||++||+.+ .+... +|++++|++|
T Consensus 132 De~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~-~d~~l~l~~~ 200 (231)
T 4a74_A 132 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHS-ATLRVYLRKG 200 (231)
T ss_dssp ETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------C-CSEEEEEEEC
T ss_pred CChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhh-ceEEEEEEec
Confidence 9999999984 2 23677777777644 899999999544 47765 6999999865
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.79 E-value=2.2e-22 Score=203.82 Aligned_cols=192 Identities=15% Similarity=0.089 Sum_probs=111.6
Q ss_pred CcEEEEEEEEEECCCcccceeee----------EEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-CccEEEECCEe
Q 020477 76 PLLQVTGLTAVIAESKQEILKGV----------NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-TEGSVVFKGEN 144 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~v----------sl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-~~G~I~~~g~~ 144 (325)
+.++++||++.|+...+++|+.+ +++++. +||+||||||||||+++|+|+ ..| ++|.|+++|.+
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl--~~P~~sG~vt~~g~~ 83 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGV--ALPRGSGIVTRCPLV 83 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSC--C-------CCCSCEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCC--CCCCCCCeEEEcCEE
Confidence 36889999999964323455444 366654 999999999999999999998 557 79999999998
Q ss_pred CCC--CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC
Q 020477 145 LLE--MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE 222 (325)
Q Consensus 145 i~~--~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 222 (325)
+.. .+.....+..++++||++.+++..++.+++....... +....
T Consensus 84 i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~-------------------------~~~~~-------- 130 (608)
T 3szr_A 84 LKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI-------------------------AGEGM-------- 130 (608)
T ss_dssp EEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH-------------------------HCSSS--------
T ss_pred EEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh-------------------------cCCcc--------
Confidence 521 1111111235788999988877667666554432110 00000
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCc------CcCCCHHHHHHHHHHHHhccC-C-CcEEEEEeCChhHH--------
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILDEI------DSGLDVDALRDVAKAVNGLLT-P-KNSLLMITHYRRLL-------- 286 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLDEP------tsgLD~~~~~~i~~~L~~l~~-~-g~tvIivtHd~~~~-------- 286 (325)
.+| ++++.++.+....|+++|+||| |+|||+..++.+.++++++.+ . +.+++++|||++.+
T Consensus 131 ~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la 207 (608)
T 3szr_A 131 GIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMA 207 (608)
T ss_dssp CCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHH
T ss_pred ccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHH
Confidence 011 1112222223458999999999 999999999999999999643 3 67899999997643
Q ss_pred hhh---CCcEEEEEeCCEEEEEcCc
Q 020477 287 EFI---KPTFIHIMEDGRIIKTGDA 308 (325)
Q Consensus 287 ~~~---~~d~i~vl~~G~iv~~g~~ 308 (325)
..+ ....|.|+.++.++..|+.
T Consensus 208 ~~v~~~g~rtI~VlTK~Dlv~~g~~ 232 (608)
T 3szr_A 208 QEVDPEGDRTIGILTKPDLVDKGTE 232 (608)
T ss_dssp HHHCSSCCSEEEEEECGGGSSSSST
T ss_pred HHHhhcCCceEEEecchhhcCcccH
Confidence 222 1356888888877766654
No 104
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=3.3e-21 Score=168.12 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=96.5
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC---CCCCCccEEEECCEeCCCCCHHHH
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP---DYEVTEGSVVFKGENLLEMEPEER 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~---~~~p~~G~I~~~g~~i~~~~~~~~ 153 (325)
+|+++|+++.|+ ..++++ |.+.+|+.++|+|+||||||||++.|+|.. ...|+.|++.+.+.-... .
T Consensus 3 ~l~~~~~~~~~~---~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-~---- 72 (210)
T 1pui_A 3 NLNYQQTHFVMS---APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-D---- 72 (210)
T ss_dssp --------CEEE---ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-T----
T ss_pred chhhhhhhheee---cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-C----
Confidence 589999999995 367888 899999999999999999999999999962 015677776542210000 0
Q ss_pred hhccEEEeccCCccC----CCc--ch-HHHHHHHHHHHhhh------c-CCCCCChHHHHHhHHHHHHhcCCcccccccc
Q 020477 154 SLAGLFMSFQSPVEI----PGV--NN-IDFLHMAYNARRRK------L-GQPEIGPIEFYAYLYPKLERLSMKTDFLNRN 219 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~----~~~--~~-~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 219 (325)
.+.+ ...|... +.. .. ...+...+...... . ....... ....+.+.+...++..-....+
T Consensus 73 ---~~~l-~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~nK 146 (210)
T 1pui_A 73 ---GKRL-VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLTK 146 (210)
T ss_dssp ---TEEE-EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---CEEE-EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEec
Confidence 0000 0111100 000 00 00000000000000 0 0000111 1123344455566542222344
Q ss_pred CCCCCChHHHHH-HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcE
Q 020477 220 VNEGFSGGERKR-NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNS 275 (325)
Q Consensus 220 ~~~~LSgGqrQR-v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~t 275 (325)
.. .+|+||+|| +..+++++.+|+++++|||||++|..+.+++++.|.++..++.|
T Consensus 147 ~D-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 147 AD-KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp GG-GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred cc-CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 44 499999999 89999999999999999999999999999999999988765543
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.79 E-value=3.7e-21 Score=179.14 Aligned_cols=153 Identities=13% Similarity=0.070 Sum_probs=102.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH-H---HH-hhccEEEeccCCccCCCcchHHHHH
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP-E---ER-SLAGLFMSFQSPVEIPGVNNIDFLH 178 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~-~---~~-~~~~i~~~~Q~~~~~~~~~~~~~~~ 178 (325)
+|++++|+||||||||||+++|+|+ +.|++|+|.+.|.++..... . .+ .+.++++++|++..++..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl--l~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY--YQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999999999998 67899999999998765431 1 11 2345778899987777666666654
Q ss_pred HHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHH
Q 020477 179 MAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258 (325)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~ 258 (325)
..... +. +. .+++..|.. +...+ .++..++||++||||++.+|+.++| .||+.+
T Consensus 179 ~~~~~-----~~-d~----------~llDt~G~~-~~~~~----~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 179 AMKAR-----GY-DL----------LFVDTAGRL-HTKHN----LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHH-----TC-SE----------EEECCCCCC-TTCHH----HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHhC-----CC-CE----------EEecCCCCC-CchHH----HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 33210 00 00 012223331 11111 1455669999999999999994444 444444
Q ss_pred HHHHHHHHHhccCC-CcEEEEEeCChh
Q 020477 259 LRDVAKAVNGLLTP-KNSLLMITHYRR 284 (325)
Q Consensus 259 ~~~i~~~L~~l~~~-g~tvIivtHd~~ 284 (325)
...+++.++++.+. +.|+|++||+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 45556666666543 789999999854
No 106
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.79 E-value=9.8e-22 Score=182.79 Aligned_cols=165 Identities=11% Similarity=0.064 Sum_probs=79.0
Q ss_pred EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEE
Q 020477 81 TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFM 160 (325)
Q Consensus 81 ~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 160 (325)
+||++.|++ +.++++++|+| +|+|+||+|||||+++|+|.. ..|++| |.++|.++.. +. .. ..+++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~-~~~~~g-i~~~g~~~~~-t~-~~--~~~~~ 67 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD-LYPERV-ISGAAEKIER-TV-QI--EASTV 67 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC------------------------------CEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCC-ccCCCC-cccCCcccCC-cc-eE--eeEEE
Confidence 578999964 67999999998 999999999999999999962 457888 8888876643 11 11 23456
Q ss_pred eccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHh
Q 020477 161 SFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL 240 (325)
Q Consensus 161 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~ 240 (325)
++|.......+++.+......... .. +....+.+.+. +..++.+. ++|||||||+.+|||++
T Consensus 68 ~~q~~~~~~~ltv~Dt~g~~~~~~-----~~-----e~~~~l~~~l~------~~~~~~~~-~~sgg~rqrv~~ara~~- 129 (301)
T 2qnr_A 68 EIEERGVKLRLTVVDTPGYGDAIN-----CR-----DCFKTIISYID------EQFERYLH-DESGLNRRHIIDNRVHC- 129 (301)
T ss_dssp EEC---CCEEEEEEEEC---------------------CTTHHHHHH------HHHHHHHH-HHTSSCCTTCCCCCCCE-
T ss_pred EecCCCcccCcchhhhhhhhhhcC-----cH-----HHHHHHHHHHH------HHHHHHHH-HhCHHhhhhhhhhhhhh-
Confidence 677665554555544432221100 00 00001111111 11223333 49999999999999886
Q ss_pred CCCEEEEeCcCcC-CCHHHHHHHHHHHHhccCC-CcEEEEEeCChh
Q 020477 241 GADLAILDEIDSG-LDVDALRDVAKAVNGLLTP-KNSLLMITHYRR 284 (325)
Q Consensus 241 ~p~lLlLDEPtsg-LD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~ 284 (325)
+|++||||++ ||+... ++++++.++ +.++|+++||+.
T Consensus 130 ---ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ---CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ---eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999999985 999874 455555543 678999999973
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.78 E-value=9.5e-22 Score=170.99 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=101.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHH
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR 184 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~ 184 (325)
|++++|+||||||||||+++|+|+ ++ ++| |.++|.+...+.. . ...+++++|+.. ....+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~--~~-~~G-i~~~g~~~~~~~~--~-~~~ig~~~~~~~--g~~~~l~--------- 62 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV--LK-SSG-VPVDGFYTEEVRQ--G-GRRIGFDVVTLS--GTRGPLS--------- 62 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH--HH-HTT-CCCEEEECCEEET--T-SSEEEEEEEETT--SCEEEEE---------
T ss_pred CCEEEEECCCCChHHHHHHHHHhh--cc-cCC-EEEcCEecchhHh--h-hceEEEEEEecc--cceehhh---------
Confidence 789999999999999999999997 55 889 9999987744321 1 234778888751 1111100
Q ss_pred hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH-HHHH---HHHhCCCEEEEeC--cCcCCCHHH
Q 020477 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN-EILQ---LAVLGADLAILDE--IDSGLDVDA 258 (325)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv-~iAr---aL~~~p~lLlLDE--PtsgLD~~~ 258 (325)
...... .. ... .....+.. ..+|+|||+++ ++++ |++.+|++||||| |+..+|...
T Consensus 63 --~~~~~~-~~-------------~~~-~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~ 124 (189)
T 2i3b_A 63 --RVGLEP-PP-------------GKR-ECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF 124 (189)
T ss_dssp --ECCCCC-CS-------------SSC-CEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH
T ss_pred --cccccC-Cc-------------ccc-ccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH
Confidence 000000 00 000 00111222 24999999998 5555 6889999999999 899999988
Q ss_pred HHHHHHHHHhccCCCcEEE----EEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020477 259 LRDVAKAVNGLLTPKNSLL----MITHYRRLLEFIKPTFIHIMEDGRIIKTG 306 (325)
Q Consensus 259 ~~~i~~~L~~l~~~g~tvI----ivtHd~~~~~~~~~d~i~vl~~G~iv~~g 306 (325)
.+.+.+++... .++| .|+||.. . .+ .|+|..+++|+|+...
T Consensus 125 ~~~l~~~l~~~----~~~ilgti~vsh~~~-~-~~-vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 125 IQAVRQTLSTP----GTIILGTIPVPKGKP-L-AL-VEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHHHHHHCS----SCCEEEECCCCCSSC-C-TT-HHHHHTTCCSEEEECC
T ss_pred HHHHHHHHhCC----CcEEEEEeecCCCCc-h-HH-HHHHeecCCcEEEEeC
Confidence 88777777642 3444 3449863 1 12 2455556788887654
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.75 E-value=1.1e-19 Score=188.68 Aligned_cols=169 Identities=19% Similarity=0.147 Sum_probs=103.6
Q ss_pred CCcEEEEEEEEEECC---CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH
Q 020477 75 QPLLQVTGLTAVIAE---SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~---~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~ 151 (325)
.+.+.+++...-.-. +++.+++|++|+ ++|++++|+||||||||||+|+|+|+. +....|. .+..
T Consensus 575 ~~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~-~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 575 KPGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA-LMAYIGS------YVPA---- 642 (800)
T ss_dssp SSCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH-HHHTTTC------CBSS----
T ss_pred CCCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH-HHHhcCc------ccch----
Confidence 345777765311100 235789999999 999999999999999999999999962 1112221 1110
Q ss_pred HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
.. ..+++++| +++.++..++ ...... .+|+++++
T Consensus 643 ~~--~~i~~~~~---i~~~~~~~d~---------------------------------------l~~~~s-tf~~e~~~- 676 (800)
T 1wb9_A 643 QK--VEIGPIDR---IFTRVGAADD---------------------------------------LASGRS-TFMVEMTE- 676 (800)
T ss_dssp SE--EEECCCCE---EEEEEC---------------------------------------------------CHHHHHH-
T ss_pred hc--ccceeHHH---HHhhCCHHHH---------------------------------------HHhhhh-hhhHHHHH-
Confidence 00 11222222 1111111110 000111 37777765
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH-HHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDV-AKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv 303 (325)
++.+...+.+|+++|||||++|+|+.....+ ..++..+.+ .|.++|++|||.++.. + +|++..+.+|++.
T Consensus 677 ~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l-~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 677 TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-L-PEKMEGVANVHLD 748 (800)
T ss_dssp HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-H-HHHSTTEEEEEEE
T ss_pred HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-H-hhhhhceEEEEEE
Confidence 4444556899999999999999998777665 677887766 4889999999998765 4 3554344455443
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.75 E-value=5.2e-22 Score=174.17 Aligned_cols=145 Identities=17% Similarity=0.088 Sum_probs=104.3
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccC--CCcchHHHHHH
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEI--PGVNNIDFLHM 179 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~--~~~~~~~~~~~ 179 (325)
.++|+++||+||||||||||+++|+|+ +.| .+++++|++.++ ..+++.++...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~--~~~-----------------------~i~~v~~d~~~~~~~~~~~~~~~~~ 57 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALART--LGE-----------------------RVALLPMDHYYKDLGHLPLEERLRV 57 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHH--HGG-----------------------GEEEEEGGGCBCCCTTSCHHHHHHS
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH--hCC-----------------------CeEEEecCccccCcccccHHHhcCC
Confidence 578999999999999999999999996 322 266778887665 33455444322
Q ss_pred HHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH----HHHHHHHHHHHhCCCEEEEeCcCcC--
Q 020477 180 AYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE----RKRNEILQLAVLGADLAILDEIDSG-- 253 (325)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq----rQRv~iAraL~~~p~lLlLDEPtsg-- 253 (325)
.+ ..+. ......+.+.++.+++. +..+.+.. .+|+|| +||+++|++++.+|+++++||||++
T Consensus 58 ~~-------~~~~---~~~~~~~~~~l~~~~~~-~~~~~~~~-~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~ 125 (211)
T 3asz_A 58 NY-------DHPD---AFDLALYLEHAQALLRG-LPVEMPVY-DFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLM 125 (211)
T ss_dssp CT-------TSGG---GBCHHHHHHHHHHHHTT-CCEEECCE-ETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTC
T ss_pred CC-------CChh---hhhHHHHHHHHHHHHcC-CCcCCCcc-cCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhc
Confidence 11 1110 01123455566777765 34445544 599996 4789999999999999999999999
Q ss_pred -----CCHHHHHHHHHHHHhc-cCCCcEEEEEeCCh
Q 020477 254 -----LDVDALRDVAKAVNGL-LTPKNSLLMITHYR 283 (325)
Q Consensus 254 -----LD~~~~~~i~~~L~~l-~~~g~tvIivtHd~ 283 (325)
||+.....+.+.+.+. .+.|.|+++++|+.
T Consensus 126 d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 126 DLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 34578999999974
No 110
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.73 E-value=6.9e-18 Score=154.63 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=96.2
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHH
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMA 180 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~ 180 (325)
.+++|++++|+||||||||||++.+++. . ..|.+ +.|.+... ...+.|+..+. .........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~--~--~~g~~-~~g~~~~~-------~~~v~~~~~e~------~~~~~~~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ--I--AGGPD-LLEVGELP-------TGPVIYLPAED------PPTAIHHRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH--H--HTCCC-TTCCCCCC-------CCCEEEEESSS------CHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH--H--hcCCC-cCCCccCC-------CccEEEEECCC------CHHHHHHHH
Confidence 4789999999999999999999999985 2 24665 33443211 11233332221 111111111
Q ss_pred HHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCc--CCCHHH
Q 020477 181 YNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS--GLDVDA 258 (325)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPts--gLD~~~ 258 (325)
.. .+. .... ....+.++.+.+. +..++.+. .||+||+|++ ++++.+|+++|+||||+ ++|...
T Consensus 88 ~~-----~g~-~~~~----~~~~~~~~~l~l~-~~~~~~~~-~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~ 152 (279)
T 1nlf_A 88 HA-----LGA-HLSA----EERQAVADGLLIQ-PLIGSLPN-IMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENA 152 (279)
T ss_dssp HH-----HHT-TSCH----HHHHHHHHHEEEC-CCTTSCCC-TTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred HH-----HHh-hcCh----hhhhhccCceEEe-ecCCCCcc-cCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCc
Confidence 00 010 0111 1233456677664 34455555 4999998865 68889999999999999 999744
Q ss_pred ---HHHHHHHHHhccC-CCcEEEEEeCChhHH
Q 020477 259 ---LRDVAKAVNGLLT-PKNSLLMITHYRRLL 286 (325)
Q Consensus 259 ---~~~i~~~L~~l~~-~g~tvIivtHd~~~~ 286 (325)
...+++.|+++++ .|.|||+++|+....
T Consensus 153 ~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 153 SGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 4888888888864 489999999987654
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.72 E-value=6.4e-19 Score=167.35 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=93.0
Q ss_pred EEEEEEECCCcccceeeeEE-------EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-ccEEEECCEeCCCCCHHH
Q 020477 81 TGLTAVIAESKQEILKGVNL-------LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-EGSVVFKGENLLEMEPEE 152 (325)
Q Consensus 81 ~~ls~~y~~~~~~iL~~vsl-------~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-~G~I~~~g~~i~~~~~~~ 152 (325)
.+++++|.......|+++.+ .+.+|++++|+||||||||||+++|+|+ +.|+ .|.|...+.++. +..
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t~ed~~e-~~~-- 166 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILTIEDPIE-FVH-- 166 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEEEESSCC-SCC--
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEEccCcHH-hhh--
Confidence 45666664333456677665 6788999999999999999999999997 4555 466644332221 100
Q ss_pred HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020477 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN 232 (325)
Q Consensus 153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv 232 (325)
... ..++.|... +. ..++-.+
T Consensus 167 ~~~--~~~v~q~~~-------------------------------------------~~----------~~~~~~~---- 187 (356)
T 3jvv_A 167 ESK--KCLVNQREV-------------------------------------------HR----------DTLGFSE---- 187 (356)
T ss_dssp CCS--SSEEEEEEB-------------------------------------------TT----------TBSCHHH----
T ss_pred hcc--ccceeeeee-------------------------------------------cc----------ccCCHHH----
Confidence 000 001111110 00 0122222
Q ss_pred HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
+||+||.++|++||+|||| |.++.+.+.+. +..|.+||+++|+.+.+. . +||++.|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~----~~~G~~vl~t~H~~~~~~-~-~dRli~l~ 244 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTA----AETGHLVFGTLHTTSAAK-T-IDRVVDVF 244 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEESCSSHHH-H-HHHHHHTS
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH----HhcCCEEEEEEccChHHH-H-HHHHhhhc
Confidence 9999999999999999999 76665554443 445889999999988774 3 46766553
No 112
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.72 E-value=2e-17 Score=141.60 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=65.7
Q ss_pred CCChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE-
Q 020477 223 GFSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM- 297 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl- 297 (325)
.||||||||++||++|+. .|+++||||||+|||+.++..+.++|+++.++ .++|+|||+..... . ||+++.+
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~~~~~-~-ad~i~~v~ 140 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRDVMMA-N-ADKIIGVS 140 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCHHHHT-T-CSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecHHHHH-h-CCEEEEEE
Confidence 499999999999999975 46999999999999999999999999998654 58999999977654 4 6998754
Q ss_pred -eCCEE
Q 020477 298 -EDGRI 302 (325)
Q Consensus 298 -~~G~i 302 (325)
.+|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 56753
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=2.3e-19 Score=173.66 Aligned_cols=167 Identities=10% Similarity=0.084 Sum_probs=92.2
Q ss_pred CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
..+|.++||++.|++ +.++++++|+| +|+|+||||||||+++|+|+. .+..| .+|..+.. .....
T Consensus 9 ~~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~--~~~~~---~~~~~~~~--~~t~~ 73 (418)
T 2qag_C 9 EGYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTD--LYSPE---YPGPSHRI--KKTVQ 73 (418)
T ss_dssp ------CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCC--CCCCC---CCSCC-------CCE
T ss_pred cCcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCC--CCCCC---CCCcccCC--cccee
Confidence 357999999999964 67999999998 999999999999999999973 33333 12222111 00111
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i 234 (325)
...+++++|.+.++..+++.++........ ....+..+.+.++ . .++.+++||++|
T Consensus 74 ~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~----------~~~~~~~i~~~i~----------~----~~~~~l~qr~~I 129 (418)
T 2qag_C 74 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVD----------NSNCWQPVIDYID----------S----KFEDYLNAESRV 129 (418)
T ss_dssp EEEEECC------CEEEEEEECC---------------------CHHHHHHHH----------H----HHHHHTTTSCC-
T ss_pred eeeEEEEEecCCcccceeeeechhhhhhcc----------chhhHHHHHHHHH----------H----HHHHHHHHHHHH
Confidence 124667778776655566655443321100 0001111222221 1 266778899999
Q ss_pred HHHHHhCCC---EEEEeCcC-cCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020477 235 LQLAVLGAD---LAILDEID-SGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL 285 (325)
Q Consensus 235 AraL~~~p~---lLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~ 285 (325)
|||++.+|+ +|++|||| .+||+... +.++.+.. +.+||+|.|-.+.
T Consensus 130 aRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTTS
T ss_pred HHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcccC
Confidence 999999999 99999999 69998774 33344433 5677777775443
No 114
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.71 E-value=3.2e-19 Score=169.16 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=98.3
Q ss_pred cceeee-EEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCc----cE-EEECCEeCCCCCHHHHhhccEEEeccCCc
Q 020477 93 EILKGV-NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE----GS-VVFKGENLLEMEPEERSLAGLFMSFQSPV 166 (325)
Q Consensus 93 ~iL~~v-sl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~----G~-I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~ 166 (325)
..|+.+ ++.|++|++++|+||||||||||++.+++....+|++ |+ |++++++.. .+.. +.+++|.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~-----i~~i~q~~~ 190 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPER-----IREIAQNRG 190 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHH-----HHHHHHTTT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHH-----HHHHHHHcC
Confidence 456666 6899999999999999999999999999973225666 67 888886541 1111 222344432
Q ss_pred cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH-------
Q 020477 167 EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV------- 239 (325)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~------- 239 (325)
+++. .+++.+-+ . +. .-|.+|+|++.++++++
T Consensus 191 ~~~~---------------------------------~v~~ni~~----~-~~---~~~~~~~~~l~~~~~~~~~lS~G~ 229 (349)
T 1pzn_A 191 LDPD---------------------------------EVLKHIYV----A-RA---FNSNHQMLLVQQAEDKIKELLNTD 229 (349)
T ss_dssp CCHH---------------------------------HHGGGEEE----E-EC---CSHHHHHHHHHHHHHHHHHSSSSS
T ss_pred CCHH---------------------------------HHhhCEEE----E-ec---CChHHHHHHHHHHHHHHHHhcccc
Confidence 2110 01111111 0 11 12678889999999888
Q ss_pred hCCCEEEEeCcCcCCCHHH------------HHHHHHHHHhccC-CCcEEEEEeCChhHHh
Q 020477 240 LGADLAILDEIDSGLDVDA------------LRDVAKAVNGLLT-PKNSLLMITHYRRLLE 287 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tvIivtHd~~~~~ 287 (325)
.+|++||+||||+++|+.. ...++..|+++++ .+.|||+++|+.....
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 6899999999999999862 4566667777654 4889999999875443
No 115
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.8e-18 Score=167.09 Aligned_cols=186 Identities=13% Similarity=0.115 Sum_probs=109.5
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCE--EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEV--HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 154 (325)
.+++++ ++.|++ .+ |+++||+|++|++ ++|+||||||||||+++|+|+. ++|.++....+...
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~----------l~g~~~~~~~~~~~- 80 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK----------FEGEPATHTQPGVQ- 80 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC----------C-------CCSSCE-
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc----------ccCCcCCCCCccce-
Confidence 466677 888864 45 9999999999999 9999999999999999999962 22333222111111
Q ss_pred hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc-CCcc---cccccc----------C
Q 020477 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL-SMKT---DFLNRN----------V 220 (325)
Q Consensus 155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~---~~~~~~----------~ 220 (325)
...+++++|++.+++.+++.+++.++...... .....+ .......+.+++... ++.. ...+.. .
T Consensus 81 ~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~-~~~~~i-~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~ 158 (427)
T 2qag_B 81 LQSNTYDLQESNVRLKLTIVSTVGFGDQINKE-DSYKPI-VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPT 158 (427)
T ss_dssp EEEEEEEEEC--CEEEEEEEEEECCCC-CCHH-HHSHHH-HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCC
T ss_pred EeeEEEEeecCccccccchhhhhhhhhccccc-hhhhHH-HHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCC
Confidence 23578889988766666655543221100000 000000 001122333444443 3210 001111 1
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHh-ccCCCcEEEEEeCC
Q 020477 221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG-LLTPKNSLLMITHY 282 (325)
Q Consensus 221 ~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvIivtHd 282 (325)
+..|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.+|.|
T Consensus 159 ~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 159 GHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp C---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 12366665 7899999999999999999999999999999999986 77779999999875
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.65 E-value=1.1e-16 Score=140.18 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=96.3
Q ss_pred ccceeeeEE-EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020477 92 QEILKGVNL-LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG 170 (325)
Q Consensus 92 ~~iL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~ 170 (325)
.+.|+.+.. .+++|++++|+||||||||||++.|++ . +..+.++++... ..+...
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~---~~~~v~~i~~~~--~~~~~~------------------ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-L---SGKKVAYVDTEG--GFSPER------------------ 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-H---HCSEEEEEESSC--CCCHHH------------------
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-H---cCCcEEEEECCC--CCCHHH------------------
Confidence 345666654 689999999999999999999999998 1 122333333221 001110
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH--HHHHHHHHHHHhC-CCEEEE
Q 020477 171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE--RKRNEILQLAVLG-ADLAIL 247 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq--rQRv~iAraL~~~-p~lLlL 247 (325)
.... . ...+. .. .+.++.+.+ . .+|+++ +|+++.+++++.+ |+++|+
T Consensus 62 -----~~~~-~----~~~~~---~~-------~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~l~~~~~~llii 111 (220)
T 2cvh_A 62 -----LVQM-A----ETRGL---NP-------EEALSRFIL---------F-TPSDFKEQRRVIGSLKKTVDSNFALVVV 111 (220)
T ss_dssp -----HHHH-H----HTTTC---CH-------HHHHHHEEE---------E-CCTTTSHHHHHHHHHHHHCCTTEEEEEE
T ss_pred -----HHHH-H----HhcCC---Ch-------HHHhhcEEE---------E-ecCCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 0000 0 00010 01 111222211 1 245553 6788888999986 999999
Q ss_pred eCcCcCCCHHH--------HHHHHHHHHhccCC-CcEEEEEeCChh-------------HHhhhCCcEEEEEeCC
Q 020477 248 DEIDSGLDVDA--------LRDVAKAVNGLLTP-KNSLLMITHYRR-------------LLEFIKPTFIHIMEDG 300 (325)
Q Consensus 248 DEPtsgLD~~~--------~~~i~~~L~~l~~~-g~tvIivtHd~~-------------~~~~~~~d~i~vl~~G 300 (325)
||||+.+|+.. ...+++.|++++++ +.|||+++|... .+... ||++++|++.
T Consensus 112 D~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~-~d~vi~l~~~ 185 (220)
T 2cvh_A 112 DSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYR-CKDILRLDKL 185 (220)
T ss_dssp ECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHT-SSEEEEEEEC
T ss_pred cCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeec-CcEEEEEEEe
Confidence 99999999732 34556667777654 889999999865 34554 7999998754
No 117
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.63 E-value=8.2e-19 Score=150.02 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=83.7
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCCCCCC---ccEEEECCEeCCCCC---HHHHh--hcc--EEEeccCCccCCCcchHH
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVT---EGSVVFKGENLLEME---PEERS--LAG--LFMSFQSPVEIPGVNNID 175 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~---~G~I~~~g~~i~~~~---~~~~~--~~~--i~~~~Q~~~~~~~~~~~~ 175 (325)
++++|+|+||||||||+++|+|+ +.|+ .|.|.++|.++..++ ...++ ..+ +.++.|++.+| +..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~--~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI--LRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH--HHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--hhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Eec--
Confidence 58999999999999999999998 5676 899999999866553 12222 223 22567776544 100
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHh-cCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEE-------EE
Q 020477 176 FLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER-LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLA-------IL 247 (325)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lL-------lL 247 (325)
. ..+....+.+.++. +. . .+..+.+.|||||+||++||||++.+|++. +=
T Consensus 77 -------------~-----~~~~~a~l~~~i~~~l~-g---~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~ 134 (171)
T 2f1r_A 77 -------------V-----SEEEGNDLDWIYERYLS-D---YDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVC 134 (171)
T ss_dssp -------------C-----CHHHHTCHHHHHHHHTT-T---CSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEEC
T ss_pred -------------C-----ChhhhhCHHHHHHhhCC-C---CCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEe
Confidence 0 00001134445554 43 2 233344469999999999999999999873 23
Q ss_pred eCcCc---CCCHHHHHHHHHHHHhccCCC
Q 020477 248 DEIDS---GLDVDALRDVAKAVNGLLTPK 273 (325)
Q Consensus 248 DEPts---gLD~~~~~~i~~~L~~l~~~g 273 (325)
|.|.. -+|....+.+.+.+.+...+|
T Consensus 135 ~~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 135 DERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SSCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cCCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 55432 234555677788876665555
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.62 E-value=5.4e-17 Score=144.08 Aligned_cols=136 Identities=16% Similarity=0.213 Sum_probs=84.8
Q ss_pred eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC--CccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchH
Q 020477 97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNI 174 (325)
Q Consensus 97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~ 174 (325)
.-.-..++|++++|+||||||||||+++|+|+ ++| ..|.|.+.+.+... ....+++|+||++..|+.+++
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~--~~p~~~~g~v~~ttr~~~~-----~e~~gi~y~fq~~~~f~~~~~- 79 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKT--QPLYDTQVSVSHTTRQPRP-----GEVHGEHYFFVNHDEFKEMIS- 79 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHH--SCTTTEEECCCEECSCCCT-----TCCBTTTBEECCHHHHHHHHH-
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhcc--CCCCceEEEEEecCCCCCc-----ccccCceEEECCHHHHHHHHh-
Confidence 33457899999999999999999999999997 444 68999888765432 112346677887633211110
Q ss_pred HHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCC
Q 020477 175 DFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL 254 (325)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgL 254 (325)
.+. .++.+. +. + .+.|-.+++ ++.++..++++||| |
T Consensus 80 -------------~~~--------------f~E~~~----~~----~-~~yg~~~~~---v~~~l~~G~illLD-----L 115 (219)
T 1s96_A 80 -------------RDA--------------FLEHAE----VF----G-NYYGTSREA---IEQVLATGVDVFLD-----I 115 (219)
T ss_dssp -------------TTC--------------EEEEEE----ET----T-EEEEEEHHH---HHHHHTTTCEEEEE-----C
T ss_pred -------------cCH--------------HHHHHH----HH----h-ccCCCCHHH---HHHHHhcCCeEEEE-----E
Confidence 000 000000 00 0 011111222 34556678999999 9
Q ss_pred CHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020477 255 DVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF 288 (325)
Q Consensus 255 D~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~ 288 (325)
|+.+++.+.+.+. ++.||+++||+++.+..
T Consensus 116 D~~~~~~i~~~l~----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 116 DWQGAQQIRQKMP----HARSIFILPPSKIELDR 145 (219)
T ss_dssp CHHHHHHHHHHCT----TCEEEEEECSSHHHHHH
T ss_pred CHHHHHHHHHHcc----CCEEEEEECCCHHHHHH
Confidence 9999999998875 47899999999987764
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.62 E-value=1.2e-19 Score=156.35 Aligned_cols=172 Identities=13% Similarity=0.003 Sum_probs=102.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHH
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR 184 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~ 184 (325)
|++++|+||||||||||+++|++ +.+|.+.++|.++... ...++++|........++.+++.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~-----~~~g~~~i~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA-----QLDNSAYIEGDIINHM-------VVGGYRPPWESDELLALTWKNITDLTVNF 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH-----HSSSEEEEEHHHHHTT-------CCTTCCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc-----ccCCeEEEcccchhhh-------hccccccCccchhHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998 3578999987654211 11223344332222223333332211100
Q ss_pred hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC--ChHHHHHHHHHH------HHHhCCCEEEEeCcCcCCCH
Q 020477 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF--SGGERKRNEILQ------LAVLGADLAILDEIDSGLDV 256 (325)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L--SgGqrQRv~iAr------aL~~~p~lLlLDEPtsgLD~ 256 (325)
. ..+... +++.+.. .... +... .+ |+|++|++.++. +++.+|+...+|+ +||+
T Consensus 70 ~-~~~~~~------------ild~~~~-~~~~-~~~~-~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~ 130 (189)
T 2bdt_A 70 L-LAQNDV------------VLDYIAF-PDEA-EALA-QTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGE 130 (189)
T ss_dssp H-HTTCEE------------EEESCCC-HHHH-HHHH-HHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CG
T ss_pred H-hcCCcE------------EEeeccC-HHHH-HHHH-HHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCH
Confidence 0 000000 0010100 0000 1111 24 889888988888 9999999988884 8999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEeCC-hhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020477 257 DALRDVAKAVNGLLTPKNSLLMITHY-RRLLEFIKPTFIHIMEDGRIIKTGDASIA 311 (325)
Q Consensus 257 ~~~~~i~~~L~~l~~~g~tvIivtHd-~~~~~~~~~d~i~vl~~G~iv~~g~~~~~ 311 (325)
...+. ++.+..+.+.+.++|.+||. ++.+..+ +++|+ ++|+++..|+++..
T Consensus 131 ~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~-~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 131 RCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDI-VKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHH-HHHHH--HCGGGSCC------
T ss_pred HHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHH-HHHHh--hCCcEEEeecCCch
Confidence 88888 88888886667799999998 8888887 58886 99999999987653
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.61 E-value=7e-19 Score=167.55 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=97.6
Q ss_pred ceeeeEEEEeC--CCEEEEEcCCCccHHHHHHHHhCCCCCCCCc----cEEEEC----CEeCCCCCHHHHhhccEEEecc
Q 020477 94 ILKGVNLLVNE--GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE----GSVVFK----GENLLEMEPEERSLAGLFMSFQ 163 (325)
Q Consensus 94 iL~~vsl~i~~--Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~----G~I~~~----g~~i~~~~~~~~~~~~i~~~~Q 163 (325)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+ +.|++ |+|.++ |.++ ........ .+++++|
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl--~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~~--~I~~~~q 231 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV--FNTTSAWEYGREFVFEKLGGDEQ-AMQYSDYP--QMALGHQ 231 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH--TTCEEECCTTHHHHHHSSSSCTT-SSCTTTHH--HHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH--hCCCcchhhHHHHHHhhcCCCcc-cCChhHHH--HHHHHHH
Confidence 45679999999 999999999999999999999998 67888 777653 2222 11111110 0122222
Q ss_pred CCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCC-ccccccccCCCCCChHHHHHHHHHHHHH-hC
Q 020477 164 SPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM-KTDFLNRNVNEGFSGGERKRNEILQLAV-LG 241 (325)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~LSgGqrQRv~iAraL~-~~ 241 (325)
++..+ .. ...+.+.+ ..+..+.... .+|+|++||..+++++. .+
T Consensus 232 ~~~~~-------------~~--------------------t~~~nl~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 277 (365)
T 1lw7_A 232 RYIDY-------------AV--------------------RHSHKIAFIDTDFITTQAF-CIQYEGKAHPFLDSMIKEYP 277 (365)
T ss_dssp HHHHH-------------HH--------------------HHCSSEEEESSCHHHHHHH-HHHHHSCCCHHHHHHHHHSC
T ss_pred HHHHH-------------HH--------------------hccCCEEEEeCCchHHHHH-HHHHcCCCCHHHHHHHhhcC
Confidence 21000 00 00000000 0011111111 25677788888888875 69
Q ss_pred CCEEEEeC---cC------cCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEE
Q 020477 242 ADLAILDE---ID------SGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIM 297 (325)
Q Consensus 242 p~lLlLDE---Pt------sgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl 297 (325)
|+++|||| |+ .++|+..+..+.+.|.++.+ .+.+||+++|. .....+ ++++.++
T Consensus 278 ~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~-~~~i~~i 341 (365)
T 1lw7_A 278 FDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRY-NQVKAVI 341 (365)
T ss_dssp CSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHH-HHHHHHH
T ss_pred CCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHH-HHHHHHH
Confidence 99999999 65 58999999999999988753 37899999985 233344 3444444
No 121
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.61 E-value=1.1e-17 Score=159.23 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=103.9
Q ss_pred EEEEEEEE---ECCCcccce---------eeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020477 79 QVTGLTAV---IAESKQEIL---------KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146 (325)
Q Consensus 79 ~~~~ls~~---y~~~~~~iL---------~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~ 146 (325)
++++++|+ |+..+..+| +++||.|++|++++|+||||||||||+++|+|+ ++|++|.|.++|..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I~ie~~~-- 212 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQE--IPFDQRLITIEDVP-- 212 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT--SCTTSCEEEEESSS--
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc--CCCCceEEEECCcc--
Confidence 66777777 743123455 999999999999999999999999999999998 77899999998742
Q ss_pred CCCHHHHhhccEEEec-cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020477 147 EMEPEERSLAGLFMSF-QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS 225 (325)
Q Consensus 147 ~~~~~~~~~~~i~~~~-Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 225 (325)
.+.... .+..+++++ |++.. .++
T Consensus 213 e~~~~~-~~~~v~~v~~q~~~~-------------------------------------------------------~~~ 236 (361)
T 2gza_A 213 ELFLPD-HPNHVHLFYPSEAKE-------------------------------------------------------EEN 236 (361)
T ss_dssp CCCCTT-CSSEEEEECC---------------------------------------------------------------
T ss_pred ccCccc-cCCEEEEeecCcccc-------------------------------------------------------ccc
Confidence 221110 112345554 32200 023
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020477 226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG 300 (325)
Q Consensus 226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G 300 (325)
++..+|..|+.++..+|+.+++||+.. .++.+.|..+.....|++.++|+.. +... ++|+..+..|
T Consensus 237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~-~~Rl~~l~~~ 302 (361)
T 2gza_A 237 APVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CELT-FERLALMVLQ 302 (361)
T ss_dssp --CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHHH-HHHHHHHHTT
T ss_pred cccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHHH-HHHHHHHHhc
Confidence 344578889999999999999999986 2345566666444457888999865 3333 4676666554
No 122
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.60 E-value=1e-15 Score=136.12 Aligned_cols=151 Identities=13% Similarity=0.177 Sum_probs=83.5
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHH
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNID 175 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~ 175 (325)
-|++|++++|+||||||||||++.|++....++ ..|.+++++++.. +......
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--~~~~~~~-------------------- 77 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--RPERLLA-------------------- 77 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--CHHHHHH--------------------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc--CHHHHHH--------------------
Confidence 489999999999999999999999999311333 4566676664311 1111000
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH-HHHHHHHH--hCCCEEEEeCcCc
Q 020477 176 FLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR-NEILQLAV--LGADLAILDEIDS 252 (325)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR-v~iAraL~--~~p~lLlLDEPts 252 (325)
.. ...+. ... +.++.+.+. . .++..+... +.-+..++ .+|+++++|||++
T Consensus 78 ---~~-----~~~g~---~~~-------~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 78 ---VA-----ERYGL---SGS-------DVLDNVAYA--------R-AFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp ---HH-----HHTTC---CHH-------HHHHTEEEE--------E-CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred ---HH-----HHcCC---CHH-------HHhhCeEEE--------e-cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 00 00010 000 112221110 0 145554433 22233333 5899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHhccCC-CcEEEEEeCChhHHhh------------------hCCcEEEEEeCC
Q 020477 253 GLDVD-------A-----LRDVAKAVNGLLTP-KNSLLMITHYRRLLEF------------------IKPTFIHIMEDG 300 (325)
Q Consensus 253 gLD~~-------~-----~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~------------------~~~d~i~vl~~G 300 (325)
.+|.. . ...++..|.+++++ |.|||+++|....... ..||.+++|++|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 34556666666544 8999999997654332 137999999865
No 123
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.59 E-value=1.3e-16 Score=149.84 Aligned_cols=167 Identities=15% Similarity=0.094 Sum_probs=106.5
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH-----HhhccEEEeccCCccCCCcchHHH
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-----RSLAGLFMSFQSPVEIPGVNNIDF 176 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~-----~~~~~i~~~~Q~~~~~~~~~~~~~ 176 (325)
.++|++++|+||||||||||+++|+|+ +.|++|+|.+.|.++......+ .++.++.+++|...+++..++.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~--l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW--LKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 368999999999999999999999997 6789999999999987655432 234567788888877776677766
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020477 177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256 (325)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~ 256 (325)
+....... . +. + .++..|.. +. -..=..+.-.++|++..++.+++||.+|. .
T Consensus 204 l~~~~~~~-----~-d~--------v--liDtaG~~-~~--------~~~l~~eL~~i~ral~~de~llvLDa~t~-~-- 255 (328)
T 3e70_C 204 IQHAKARG-----I-DV--------V--LIDTAGRS-ET--------NRNLMDEMKKIARVTKPNLVIFVGDALAG-N-- 255 (328)
T ss_dssp HHHHHHHT-----C-SE--------E--EEEECCSC-CT--------TTCHHHHHHHHHHHHCCSEEEEEEEGGGT-T--
T ss_pred HHHHHhcc-----c-hh--------h--HHhhccch-hH--------HHHHHHHHHHHHHHhcCCCCEEEEecHHH-H--
Confidence 65432110 0 00 0 01122221 00 01122333458999998888888885554 2
Q ss_pred HHHHHHHHHHHhccC-CCcEEEEEeCChh---------HHhhhCCcEEEEEeCCEEE
Q 020477 257 DALRDVAKAVNGLLT-PKNSLLMITHYRR---------LLEFIKPTFIHIMEDGRII 303 (325)
Q Consensus 257 ~~~~~i~~~L~~l~~-~g~tvIivtHd~~---------~~~~~~~d~i~vl~~G~iv 303 (325)
.+.+.++.+.+ .+.|+|++||.-+ .+... ...|.++..|+.+
T Consensus 256 ----~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~-~~pi~~i~~Ge~v 307 (328)
T 3e70_C 256 ----AIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVI-DAPILFVGVGQGY 307 (328)
T ss_dssp ----HHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHH-TCCEEEEECSSST
T ss_pred ----HHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHH-CCCEEEEeCCCCc
Confidence 44444455542 3789999999532 12222 2346667777654
No 124
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.59 E-value=1.5e-17 Score=143.05 Aligned_cols=152 Identities=16% Similarity=0.036 Sum_probs=87.9
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHH
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMA 180 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~ 180 (325)
.+++|++++|+||||||||||+++|+|. +..|.|.++|.++.... .....+++++|+.. +..++.+++...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~---~~~~~~~~~~~~~~--~~~~v~~~l~~~ 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYI---KHGRIDPWLPQSHQ--QNRMIMQIAADV 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTC---CSSCCCTTSSSHHH--HHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhh---hcccccCCccchhh--hhHHHHHHHHHH
Confidence 4789999999999999999999999995 57899999986542111 00111234444432 123344443322
Q ss_pred HHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccc--cccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHH
Q 020477 181 YNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFL--NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258 (325)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~ 258 (325)
...... .+.... +...+..+++. .+. +..+. .+|+|++||+++||++.++|+++ +|+..
T Consensus 76 ~~~~~~-~~~~~~--------~~~~~~~~~l~-~~~~~~~~~~-~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~ 136 (191)
T 1zp6_A 76 AGRYAK-EGYFVI--------LDGVVRPDWLP-AFTALARPLH-YIVLRTTAAEAIERCLDRGGDSL--------SDPLV 136 (191)
T ss_dssp HHHHHH-TSCEEE--------ECSCCCTTTTH-HHHTTCSCEE-EEEEECCHHHHHHHHHTTCTTSC--------CCHHH
T ss_pred HHHHhc-cCCeEE--------EeccCcHHHHH-HHHhcCCCeE-EEEecCCHHHHHHHHHhcCCCcc--------CCHHH
Confidence 111000 000000 00000001110 011 12222 49999999999999999999986 68888
Q ss_pred HHHHHHHHHhccCCCcEEEEEeC
Q 020477 259 LRDVAKAVNGLLTPKNSLLMITH 281 (325)
Q Consensus 259 ~~~i~~~L~~l~~~g~tvIivtH 281 (325)
.+.+.+.+..+...+ .+++.|+
T Consensus 137 ~~~~~~~~~~l~~~~-~~~i~t~ 158 (191)
T 1zp6_A 137 VADLHSQFADLGAFE-HHVLPVS 158 (191)
T ss_dssp HHHHHHHTTCCGGGG-GGEEECT
T ss_pred HHHHHHHHhccCccc-ccEEECC
Confidence 888888887764433 3344554
No 125
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.58 E-value=1e-14 Score=139.03 Aligned_cols=73 Identities=26% Similarity=0.311 Sum_probs=64.3
Q ss_pred CCChHHHHHH------HHHHHHHhC-CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEE
Q 020477 223 GFSGGERKRN------EILQLAVLG-ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295 (325)
Q Consensus 223 ~LSgGqrQRv------~iAraL~~~-p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~ 295 (325)
.|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|.++.+ +.+||+|||+++. ... +|+++
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~~-~~~-~d~~~ 356 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHREL-EDV-ADVII 356 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGGG-GGG-CSEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHHH-Hhh-CCEEE
Confidence 5999999988 567899999 999999999999999999999999999754 4689999999874 455 69998
Q ss_pred EEe
Q 020477 296 IME 298 (325)
Q Consensus 296 vl~ 298 (325)
+|+
T Consensus 357 ~l~ 359 (371)
T 3auy_A 357 NVK 359 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 126
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.56 E-value=2.1e-18 Score=155.14 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=93.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHh---CCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHH
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLV---GHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMA 180 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~---Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~ 180 (325)
++++++|+||||||||||+++|+ |+ ..++.|+|.++|.+.. ..... .+..++|+..+++..++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~--~~~~~G~i~~~~~~~~--~~~~~---~i~~~~~~~~~~~~~~v~~~l~~~ 98 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL--QHLSSGHFLRENIKAS--TEVGE---MAKQYIEKSLLVPDHVITRLMMSE 98 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC--CCEEHHHHHHHHHHTT--CHHHH---HHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC--eEecHHHHHHHHHhcC--ChHHH---HHHHHHHcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999 97 5688999988765421 11111 122335666666655666655432
Q ss_pred HHH-Hhh---hcCCCCCChHHHHHhHHHHH--HhcCC-----------ccccccccCCCCCChHHHHHHHHHHHH-HhCC
Q 020477 181 YNA-RRR---KLGQPEIGPIEFYAYLYPKL--ERLSM-----------KTDFLNRNVNEGFSGGERKRNEILQLA-VLGA 242 (325)
Q Consensus 181 ~~~-~~~---~~~~~~~~~~~~~~~~~~~l--~~~~l-----------~~~~~~~~~~~~LSgGqrQRv~iAraL-~~~p 242 (325)
... ... ..+.+. .. . .+.... ..+++ .....++.+. .||| |+ +|+ +.+|
T Consensus 99 l~~~~~~~~il~g~~~-~~-~---~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~-~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 99 LENRRGQHWLLDGFPR-TL-G---QAEALDKICEVDLVISLNIPFETLKDRLSRRWIH-PPSG----RV---YNLDFNPP 165 (246)
T ss_dssp HHTCTTSCEEEESCCC-SH-H---HHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEE-TTTT----EE---EETTTSCC
T ss_pred HHhcCCCeEEEECCCC-CH-H---HHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCc-CCCC----Cc---cccccCCC
Confidence 210 000 001111 11 1 111111 11220 0122345554 4999 66 778 9999
Q ss_pred CEEEEe----CcCcCCCHHHHHHHHHHHHhccCCC
Q 020477 243 DLAILD----EIDSGLDVDALRDVAKAVNGLLTPK 273 (325)
Q Consensus 243 ~lLlLD----EPtsgLD~~~~~~i~~~L~~l~~~g 273 (325)
++++|| |||++||..+++.+.+.|+++.+++
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999999 9999999999999999998886543
No 127
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.55 E-value=1.2e-15 Score=145.68 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=82.7
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-ccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcc
Q 020477 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-EGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN 172 (325)
Q Consensus 94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~ 172 (325)
+|++++ +++|++++|+||||||||||+++|+|+ +.|+ +|+|.+.|.++. +. ....+++++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e-~~----~~~~~~~v~Q~~------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIE-YV----FKHKKSIVNQRE------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCC-SC----CCCSSSEEEEEE-------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHh-hh----hccCceEEEeee-------
Confidence 566655 789999999999999999999999997 5666 899977665442 10 011223333421
Q ss_pred hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCc
Q 020477 173 NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252 (325)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPts 252 (325)
+++. +. .| +.+|+++|..+|++|++|||+
T Consensus 191 ------------------------------------~g~~-------~~-~~------~~~l~~~L~~~pd~illdE~~- 219 (372)
T 2ewv_A 191 ------------------------------------VGED-------TK-SF------ADALRAALREDPDVIFVGEMR- 219 (372)
T ss_dssp ------------------------------------BTTT-------BS-CS------HHHHHHHTTSCCSEEEESCCC-
T ss_pred ------------------------------------cCCC-------HH-HH------HHHHHHHhhhCcCEEEECCCC-
Confidence 1111 11 25 469999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020477 253 GLDVDALRDVAKAVNGLLTPKNSLLMITHYRR 284 (325)
Q Consensus 253 gLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~ 284 (325)
|+++...+ ++.. ..|.+|+.++|+.+
T Consensus 220 --d~e~~~~~---l~~~-~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 220 --DLETVETA---LRAA-ETGHLVFGTLHTNT 245 (372)
T ss_dssp --SHHHHHHH---HHHH-TTTCEEEECCCCCS
T ss_pred --CHHHHHHH---HHHH-hcCCEEEEEECcch
Confidence 77665443 4333 45789999999865
No 128
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.54 E-value=7.8e-15 Score=138.96 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=91.1
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-CCccEEEEC-CEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020477 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-VTEGSVVFK-GENLLEMEPEERSLAGLFMSFQSPVEIPGV 171 (325)
Q Consensus 94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-p~~G~I~~~-g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~ 171 (325)
-++++++. .+|++++|+||||||||||+|+|+|+ .. |.+|+|.++ |.... ......+++++|+..+++..
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~--~~~~~~G~I~~~~G~g~~-----tt~~~~i~~v~q~~~l~dtp 276 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGL--QNEILTNDVSNVSGLGQH-----TTTAARLYHFPHGGDVIDSP 276 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCC--SSCCCCC------------------CCCEEEECTTSCEEEECH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcc--ccccccCCccccCCCCcc-----ceEEEEEEEECCCCEecCcc
Confidence 46666664 48999999999999999999999997 56 899999987 65432 11223578889988776665
Q ss_pred chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020477 172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID 251 (325)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt 251 (325)
++.++ +.......+....+.++++.+++. ++.+..+.+ || ||+||++||+++
T Consensus 277 gv~e~------------~l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~-lS-G~~~r~ala~gl------------- 328 (358)
T 2rcn_A 277 GVREF------------GLWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDA-DP-GCAIREAVENGA------------- 328 (358)
T ss_dssp HHHTC------------CCCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSS-CT-TCHHHHHHHHTS-------------
T ss_pred cHHHh------------hhcCCCHHHHHHHHHHHHHHcCCc-hhcCCCccc-CC-HHHHHHHHHhcC-------------
Confidence 55442 111233444455667778888885 567777654 99 999999999874
Q ss_pred cCCCHHHHHHHHHHHHhcc
Q 020477 252 SGLDVDALRDVAKAVNGLL 270 (325)
Q Consensus 252 sgLD~~~~~~i~~~L~~l~ 270 (325)
+++.-.+...+++.++.
T Consensus 329 --i~~~R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 329 --IAETRFENYHRILESMA 345 (358)
T ss_dssp --SCHHHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHHHHHHHH
Confidence 35555555556666654
No 129
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.54 E-value=5e-18 Score=158.86 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=92.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCC------CCCCccEEEECCEeCCCCCHH---------------HHhhccEEEe---
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPD------YEVTEGSVVFKGENLLEMEPE---------------ERSLAGLFMS--- 161 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~------~~p~~G~I~~~g~~i~~~~~~---------------~~~~~~i~~~--- 161 (325)
++++|+|+||||||||+|.|.|+.. +.|+.|+|.++|.++...... ... ..+.++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~-~~l~~l~~~ 83 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELE-DALLDLLDN 83 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHH-HHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHH-HHHHHHHhH
Confidence 5899999999999999999999720 167999999999987654210 000 112222
Q ss_pred ccCCccCCCcchHHHHHHHHHHH-hhhc-CCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH
Q 020477 162 FQSPVEIPGVNNIDFLHMAYNAR-RRKL-GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV 239 (325)
Q Consensus 162 ~Q~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~ 239 (325)
+|++.+++..++.++...+.... ...+ ... .......+...+..+++. ++.++.. +||+||+||+..+++++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~---~~~~~~~l~~~l~~vd~~-~~~~~~~--~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHE---VLCQRYLLDGVIALVDAV-HADEQMN--QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSH---HHHHHEEEEEEEEEEETT-THHHHHH--HCHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCc---cccCeEEECCEEEEEEHH-HHHHHHh--hchHHHHHHHhCCEEEE
Confidence 34443323333222211100000 0000 000 000000011112222332 2222222 38999999999999999
Q ss_pred hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020477 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL 286 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~ 286 (325)
.+|+++ ||| +.+.+.|+++. .+.+|+++||+...+
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDIDL 192 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCG
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCCH
Confidence 999987 998 77788888875 578999999964333
No 130
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.54 E-value=8.9e-18 Score=141.77 Aligned_cols=87 Identities=17% Similarity=0.059 Sum_probs=68.1
Q ss_pred EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEE
Q 020477 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF 159 (325)
Q Consensus 80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 159 (325)
.+++++.|+ ++.+++++||+|++|++++|+||||||||||+|+|+|+ . |++|+|.++|.++... ... ..
T Consensus 10 ~~~~~~~~g--~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~--l-~~~G~V~~~g~~i~~~--~~~--~~-- 78 (158)
T 1htw_A 10 DEFSMLRFG--KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG--I-GHQGNVKSPTYTLVEE--YNI--AG-- 78 (158)
T ss_dssp SHHHHHHHH--HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH--T-TCCSCCCCCTTTCEEE--EEE--TT--
T ss_pred CHHHHHHHH--HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh--C-CCCCeEEECCEeeeee--ccC--CC--
Confidence 345666674 35789999999999999999999999999999999997 5 8999999999776421 111 12
Q ss_pred EeccCCccCCCcchHHHHH
Q 020477 160 MSFQSPVEIPGVNNIDFLH 178 (325)
Q Consensus 160 ~~~Q~~~~~~~~~~~~~~~ 178 (325)
+++|++.++ .+++.+++.
T Consensus 79 ~~~q~~~l~-~ltv~e~l~ 96 (158)
T 1htw_A 79 KMIYHFDLY-RLADPEELE 96 (158)
T ss_dssp EEEEEEECT-TCSCTTHHH
T ss_pred cceeccccc-cCCcHHHHH
Confidence 467888777 778766653
No 131
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.51 E-value=5.2e-16 Score=152.06 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=98.6
Q ss_pred eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH----HHH-hhccEEEeccCCccCC
Q 020477 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP----EER-SLAGLFMSFQSPVEIP 169 (325)
Q Consensus 95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~----~~~-~~~~i~~~~Q~~~~~~ 169 (325)
-+++||++.+|++++|+|+||||||||+++|+|+ +.+++|+|.++|.+...... ..+ .+.++++++|++..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl--l~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ--FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH--hhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 4689999999999999999999999999999997 56889999998877643211 111 2345788899876666
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH-hCC-CEEEE
Q 020477 170 GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV-LGA-DLAIL 247 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~-~~p-~lLlL 247 (325)
..++.+++..... . +. +. + +++..|.... +. .|-.-.+|++.+++++. ..| ++||.
T Consensus 361 ~~tV~e~l~~a~~---~--~~-Dv--------V--LIDTaGrl~~--~~----~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 361 ASVIFDAIQAAKA---R--NI-DV--------L--IADTAGRLQN--KS----HLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHH---T--TC-SE--------E--EECCCCSCCC--HH----HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHh---c--CC-CE--------E--EEeCCCccch--hh----hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 5666666544321 0 00 00 0 0122222100 00 01123357888888764 456 45656
Q ss_pred eCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020477 248 DEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281 (325)
Q Consensus 248 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtH 281 (325)
.+||+|.|.... .+.+++ .-+.|.||+||
T Consensus 419 LDattGq~al~~---ak~f~~--~~~itgvIlTK 447 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHE--AVGLTGITLTK 447 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHH--HTCCSEEEEEC
T ss_pred ecCcccHHHHHH---HHHHHh--hcCCCEEEEEc
Confidence 668988665422 222222 12678899999
No 132
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.51 E-value=3e-18 Score=161.66 Aligned_cols=185 Identities=11% Similarity=0.029 Sum_probs=114.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---HHH
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---EER 153 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---~~~ 153 (325)
+++++++++.|+ .+.+|++++|++.+|++++|+|+||||||||+++|+|+ +.|++|+|.+.|.++..... ...
T Consensus 29 ~ie~~~~~~~~~--~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~--~~~~~g~v~i~~~d~~~~~~~~~~~~ 104 (337)
T 2qm8_A 29 LAESRRADHRAA--VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL--LTAAGHKVAVLAVDPSSTRTGGSILG 104 (337)
T ss_dssp HHTCSSHHHHHH--HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEEEECGGGGSSCCCSSC
T ss_pred HHeeCCcccccC--hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh--hhhCCCEEEEEEEcCcccccccchHH
Confidence 466788888885 35799999999999999999999999999999999997 56889999999988643211 000
Q ss_pred hhccEEEeccCCccCCCcc------------hHHHHHHH-------------------HHHHhh-h----cCCCCCChH-
Q 020477 154 SLAGLFMSFQSPVEIPGVN------------NIDFLHMA-------------------YNARRR-K----LGQPEIGPI- 196 (325)
Q Consensus 154 ~~~~i~~~~Q~~~~~~~~~------------~~~~~~~~-------------------~~~~~~-~----~~~~~~~~~- 196 (325)
.+..+++++|++..+...+ ..+.+... ...... . .-.......
T Consensus 105 ~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~ 184 (337)
T 2qm8_A 105 DKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDEL 184 (337)
T ss_dssp CGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC----
T ss_pred HhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccH
Confidence 1123567788876654211 11111000 000000 0 000000000
Q ss_pred H-HHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHh------CCCEEEEeCcCcCCCHHHHHHHHHHHHhc
Q 020477 197 E-FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL------GADLAILDEIDSGLDVDALRDVAKAVNGL 269 (325)
Q Consensus 197 ~-~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l 269 (325)
+ ....+.+....+.+ +..|......+|+|++|++..|++++. +|++++ ||++|......+++.|.++
T Consensus 185 ~~i~~~i~~~~~ivvl--NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 185 QGIKKGIFELADMIAV--NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp --CCTTHHHHCSEEEE--ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhccccEEEE--EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0 00011111112222 112211112379999999999999987 688876 9999999999999999886
Q ss_pred cC
Q 020477 270 LT 271 (325)
Q Consensus 270 ~~ 271 (325)
..
T Consensus 259 ~~ 260 (337)
T 2qm8_A 259 RS 260 (337)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.49 E-value=2.2e-14 Score=122.45 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=40.0
Q ss_pred HhCCCEEEEeCcCc-CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 020477 239 VLGADLAILDEIDS-GLDVDALRDVAKAVNGLLTPKNSLLMITHYR 283 (325)
Q Consensus 239 ~~~p~lLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvIivtHd~ 283 (325)
+.+|++||||||++ ++|+..++.+.+++.+..++|+++|++||..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45999999999995 9999999999999988876788999999975
No 134
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.48 E-value=4.3e-17 Score=161.64 Aligned_cols=175 Identities=13% Similarity=0.067 Sum_probs=104.6
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEec----------
Q 020477 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSF---------- 162 (325)
Q Consensus 93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~---------- 162 (325)
.+++++++.+++|+.++|+||||||||||+++|+|+ ++|++|.|.+.|.+-..... ...+.+..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~--i~~~~giitied~~E~~~~~----~~~v~~~~r~~~~~~~~~ 321 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF--IPPDAKVVSIEDTREIKLYH----ENWIAEVTRTGMGEGEID 321 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG--SCTTCCEEEEESSCCCCCCC----SSEEEEECBCCSSSCCBC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh--CCCCCCEEEEcCcccccCCC----CCeEEEEeecccccCCcC
Confidence 468899999999999999999999999999999998 67899999998865222110 01122222
Q ss_pred ----------cCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc-----CCcccc---cc---cc
Q 020477 163 ----------QSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL-----SMKTDF---LN---RN 219 (325)
Q Consensus 163 ----------Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~l~~~~---~~---~~ 219 (325)
|+|. ++..++..+..... .... .+....... ....+.++++++ ++.... ++ ..
T Consensus 322 ~~~~l~~~LR~~PD~iivgEir~~E~~~~l-~a~~--tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~ 397 (511)
T 2oap_1 322 MYDLLRAALRQRPDYIIVGEVRGREAQTLF-QAMS--TGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIALVQ 397 (511)
T ss_dssp HHHHHHTTGGGCCSEEEESCCCSTHHHHHH-HHHH--TTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE
T ss_pred HHHHHHHhhccCCCeEEeCCcCHHHHHHHH-Hhhc--CCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEEEE
Confidence 2221 11223333322211 1111 010000000 000112222322 221111 11 11
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEE--EeCChhHHhhhC
Q 020477 220 VNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLM--ITHYRRLLEFIK 290 (325)
Q Consensus 220 ~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIi--vtHd~~~~~~~~ 290 (325)
.. .+|+||+||+++|. + | |+|||+.....+++.|.++.+++.|+++ +||+++.+...+
T Consensus 398 ~~-~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 398 TM-WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp EE-EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred EE-EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 11 37999999987752 2 7 9999999888888888888777889875 899999887664
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.47 E-value=1.6e-14 Score=120.38 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=35.7
Q ss_pred HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcE-EEEEeCC
Q 020477 239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNS-LLMITHY 282 (325)
Q Consensus 239 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~t-vIivtHd 282 (325)
+.+|++|++|||++ +|...++.+.+++.++.++|++ +|++||.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 56899999999998 6666688999999988766777 8888884
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.46 E-value=5.3e-14 Score=135.37 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=44.3
Q ss_pred hCCCEEEEeCcCcCCCHHHH------------HHHHHHHHhccCC-CcEEEEEeCCh-------------------hHHh
Q 020477 240 LGADLAILDEIDSGLDVDAL------------RDVAKAVNGLLTP-KNSLLMITHYR-------------------RLLE 287 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~~~~------------~~i~~~L~~l~~~-g~tvIivtHd~-------------------~~~~ 287 (325)
.+|+++++|||++.+|.... ..+++.|++++++ |.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 47999999999999997533 5678888888755 89999999982 2234
Q ss_pred hhCCcEEEEEeCC
Q 020477 288 FIKPTFIHIMEDG 300 (325)
Q Consensus 288 ~~~~d~i~vl~~G 300 (325)
.. +|.+++|+++
T Consensus 352 ~~-ad~vl~L~~~ 363 (400)
T 3lda_A 352 YS-STTRLGFKKG 363 (400)
T ss_dssp HH-CSEEEEEEEC
T ss_pred Hh-cceEEEEEec
Confidence 44 6888888765
No 137
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.46 E-value=5.1e-15 Score=143.11 Aligned_cols=146 Identities=17% Similarity=0.143 Sum_probs=85.6
Q ss_pred eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC---------CCCCccEEEECCEeCCCCCHHHHhhccEEEeccCC
Q 020477 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD---------YEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSP 165 (325)
Q Consensus 95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~---------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~ 165 (325)
-++++|+++.|+.++|+|+||||||||+++|+|... +.|+.|.|.+++. . -..+.+.|
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~------------~-~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE------------E-RFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS------------C-EEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc------------c-eEEEEecc
Confidence 478999999999999999999999999999999610 1222333333220 0 01122333
Q ss_pred ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH---hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC
Q 020477 166 VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA---YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA 242 (325)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p 242 (325)
.+...... + . ... ..... ++..++..+++. .+.+. +||+||+|++++|++|+..|
T Consensus 214 Gli~~a~~--~-----------~---~L~-~~fl~~~era~~lL~vvDls----~~~~~-~ls~g~~el~~la~aL~~~P 271 (416)
T 1udx_A 214 GIIEGASE--G-----------K---GLG-LEFLRHIARTRVLLYVLDAA----DEPLK-TLETLRKEVGAYDPALLRRP 271 (416)
T ss_dssp CCCCCGGG--S-----------C---CSC-HHHHHHHTSSSEEEEEEETT----SCHHH-HHHHHHHHHHHHCHHHHHSC
T ss_pred ccccchhh--h-----------h---hhh-HHHHHHHHHHHhhhEEeCCc----cCCHH-HHHHHHHHHHHHhHHhhcCC
Confidence 22211000 0 0 000 00000 011112222321 22232 49999999999999999999
Q ss_pred CEEEEeCcCcCCCHHHHHHHHHHHHh-ccCCCcEEEEEe
Q 020477 243 DLAILDEIDSGLDVDALRDVAKAVNG-LLTPKNSLLMIT 280 (325)
Q Consensus 243 ~lLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvIivt 280 (325)
.+|++ +.+|.... ..++.+.+ +.+.+.+++++|
T Consensus 272 ~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 272 SLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVS 305 (416)
T ss_dssp EEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECC
T ss_pred EEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEE
Confidence 99999 99999766 33444433 344566777666
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=1.1e-13 Score=130.05 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=73.5
Q ss_pred EEEEEcCCCccHHHHHHHHhC-CCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG-HPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR 185 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G-l~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~ 185 (325)
.+.|.||||+|||||+++|+| + +.|+.|.+.++|.+....... ...+++++|.+.+......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l--~~~~~g~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------------ 100 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI--FGPGVYRLKIDVRQFVTASNR---KLELNVVSSPYHLEITPSD------------ 100 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH--SCTTCCC---------------------CCEECSSEEEECCC-------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHH--cCCCCCeEEecceeecccccc---cceeeeecccceEEecHhh------------
Confidence 389999999999999999999 6 578899999999775432111 2234555665532110000
Q ss_pred hhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHH
Q 020477 186 RKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265 (325)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~ 265 (325)
.+.. ........+.++....++. ... .||| +..+|+++|+|||++ ||......+++.
T Consensus 101 --~~~~--~~~~~~~~i~~~~~~~~~~-----~~~--~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~ 157 (354)
T 1sxj_E 101 --MGNN--DRIVIQELLKEVAQMEQVD-----FQD--SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRT 157 (354)
T ss_dssp -----C--CHHHHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHH
T ss_pred --cCCc--chHHHHHHHHHHHHhcccc-----ccc--cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHH
Confidence 0000 0001111122221222221 111 2676 778999999999999 999999999999
Q ss_pred HHhccCCCcEEEEEeCChhH
Q 020477 266 VNGLLTPKNSLLMITHYRRL 285 (325)
Q Consensus 266 L~~l~~~g~tvIivtHd~~~ 285 (325)
|.+.. .+.++|++||++..
T Consensus 158 le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 158 MEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHST-TTEEEEEEESCSCS
T ss_pred HHhhc-CCCEEEEEeCCHHH
Confidence 99874 46799999998653
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.40 E-value=1.2e-14 Score=134.35 Aligned_cols=130 Identities=15% Similarity=0.045 Sum_probs=77.9
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHH
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYN 182 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~ 182 (325)
.++.+++|+|++|||||||++.|.++ +.+ .| . . ...+.+++|+..+++. +..+++.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~--l~~-~g------~--------~--~~~~~iv~~D~f~~~~-~~~~~l~~~~~ 88 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH--LME-KY------G--------G--EKSIGYASIDDFYLTH-EDQLKLNEQFK 88 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH--HHH-HH------G--------G--GSCEEEEEGGGGBCCH-HHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--hhh-cC------C--------C--CceEEEeccccccCCh-HHHHHHhcccc
Confidence 35789999999999999999999997 322 22 0 0 1224455898877653 34444332210
Q ss_pred --HHhhhcCCCCCChHHHHHhHHHHHHhcCCcc------ccccccCCCCCChHHHHHHHHH--HHHHhCCCEEEEeCcCc
Q 020477 183 --ARRRKLGQPEIGPIEFYAYLYPKLERLSMKT------DFLNRNVNEGFSGGERKRNEIL--QLAVLGADLAILDEIDS 252 (325)
Q Consensus 183 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~~LSgGqrQRv~iA--raL~~~p~lLlLDEPts 252 (325)
......+.+.... ...+.+.++.+.... ..........+||||+||+++| +++ +|+|||+||||+
T Consensus 89 ~~~l~~~~g~p~a~d---~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~ 163 (290)
T 1odf_A 89 NNKLLQGRGLPGTHD---MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFL 163 (290)
T ss_dssp TCGGGSSSCSTTSBC---HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESST
T ss_pred ccchhhhccCcchhH---HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccc
Confidence 0000111222211 233455566554321 0001111235999999999997 555 999999999999
Q ss_pred CCCHH
Q 020477 253 GLDVD 257 (325)
Q Consensus 253 gLD~~ 257 (325)
++|+.
T Consensus 164 ~ld~~ 168 (290)
T 1odf_A 164 GFNPI 168 (290)
T ss_dssp TCCCC
T ss_pred cCCcc
Confidence 99985
No 140
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.38 E-value=1.4e-16 Score=154.22 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=90.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH--HHh
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE--ERS 154 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~--~~~ 154 (325)
.++++++++.|+ ...+|+++ +. .+|++++|+||||||||||+++|+|+ +.|++|+|.+.|.++...... +..
T Consensus 143 ~~~l~~Lg~~~~--~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~--l~~~~g~I~~~ed~ie~~~~~~~q~~ 216 (418)
T 1p9r_A 143 RLDLHSLGMTAH--NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQE--LNSSERNILTVEDPIEFDIDGIGQTQ 216 (418)
T ss_dssp CCCGGGSCCCHH--HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHH--HCCTTSCEEEEESSCCSCCSSSEEEE
T ss_pred CCCHHHcCCCHH--HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhh--cCCCCCEEEEecccchhccCCcceEE
Confidence 344555555543 23467777 43 78999999999999999999999997 567899999988776421100 000
Q ss_pred -hccEEEec---------cCCccC--CC----cchHHHHHHHHHHHh--hhcCCCCCChHHHHHhHHHHHHhcCCccccc
Q 020477 155 -LAGLFMSF---------QSPVEI--PG----VNNIDFLHMAYNARR--RKLGQPEIGPIEFYAYLYPKLERLSMKTDFL 216 (325)
Q Consensus 155 -~~~i~~~~---------Q~~~~~--~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 216 (325)
...+++.| |+|..+ .. .++.+++........ ...... ...+ +.+.+..+++.. ..
T Consensus 217 v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~--~~~~----~i~rL~~lgl~~-~~ 289 (418)
T 1p9r_A 217 VNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN--TAVG----AVTRLRDMGIEP-FL 289 (418)
T ss_dssp CBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCS--SSHH----HHHHHHHHTCCH-HH
T ss_pred EccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchh--hHHH----HHHHHHHcCCcH-HH
Confidence 01122333 777642 32 244444433211000 000111 1111 223466677753 22
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 020477 217 NRNVNEGFSGGERKRNEILQLAVLGADLAI 246 (325)
Q Consensus 217 ~~~~~~~LSgGqrQRv~iAraL~~~p~lLl 246 (325)
.+. .|||||+|| |||+|+.+|++..
T Consensus 290 --~~~-~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 --ISS-SLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp --HHH-HEEEEEEEE--EEEEECTTTCEEE
T ss_pred --HHH-HHHHHHHHH--hhhhhcCCCCccC
Confidence 233 599999999 9999999999876
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.36 E-value=7.9e-16 Score=134.87 Aligned_cols=42 Identities=33% Similarity=0.389 Sum_probs=34.6
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeC
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENL 145 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i 145 (325)
.++|++++|+||||||||||+++|+|+ +.| ..|.|.++|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~--~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA--LSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH--HHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH--HhhcCCceEEEecCCCcC
Confidence 478999999999999999999999997 443 467777776544
No 142
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.35 E-value=3.4e-14 Score=131.89 Aligned_cols=128 Identities=12% Similarity=-0.022 Sum_probs=78.2
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEE---CCEeCCCCCHHHHhhccEEEeccCCccC-----CCcc
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVF---KGENLLEMEPEERSLAGLFMSFQSPVEI-----PGVN 172 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~i~~~~Q~~~~~-----~~~~ 172 (325)
++.+|++++|+||||||||||+|+|+ + ..|++|+|.+ +|+++..... ......+++++|+|.+. +.++
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~--~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt 236 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-G--EELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVK 236 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-S--CCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-H--hhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCC
Confidence 44579999999999999999999999 7 6789999999 8988765321 11112467889998543 4566
Q ss_pred hHHHHHHHHH----HHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 173 NIDFLHMAYN----ARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 173 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
+ +++...+. ......+... ..+...++.++++.+++.....++.+. .|||.+++++.|||
T Consensus 237 ~-e~l~~~f~~~~~~~c~~~~~~~--~~e~~~~v~~~l~~~~L~~~~~~~~~~-~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 237 P-REVRNYFREFLRYQCKYPDCTH--TNEPGCAVKEAVKNGEISCERYKSYLK-IIKVYLEEIKELCR 300 (302)
T ss_dssp G-GGGGGGCGGGHHHHHHSTTCCS--SSCTTCHHHHHHHTTSSCHHHHHHHHH-HTTCCCTTHHHHSS
T ss_pred H-HHHHHHHHHHHHccCCCCCCCC--CCCCCCHHHHHHHcCCCCHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 6 44421111 0000011000 011123467789999996435566665 49998899999986
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=8.5e-16 Score=147.36 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=110.7
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCC----------CCCCCccEEEECCEeCCCCCHHHHhh--c-cEEEeccCCcc
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHP----------DYEVTEGSVVFKGENLLEMEPEERSL--A-GLFMSFQSPVE 167 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~----------~~~p~~G~I~~~g~~i~~~~~~~~~~--~-~i~~~~Q~~~~ 167 (325)
.+.+|..++|+|+||||||||+++|+|.. ...|+.|.|.+.|..+..+....... . ....+.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 45789999999999999999999999921 14588999999875431110000000 0 12234466655
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC--CEE
Q 020477 168 IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA--DLA 245 (325)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~lL 245 (325)
+.+.+..+.+...+... .... ..++.-+.. +.+..+.. +||+. +| +++
T Consensus 96 ~~~~s~~e~L~~~fl~~---ir~~-----------d~il~Vvd~---~~d~~i~~-v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSH---VRAV-----------DAIYQVVRA---FDDAEIIH-VEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSSCHHHHHH---HTTC-----------SEEEEEEEC---CCTTCSSC-CSSSS------------CHHHHHH
T ss_pred ccCCcHHHHHHHHHHHH---HHHH-----------HHHHHHHhc---cccceeee-ecccc------------Ccchhhh
Confidence 54443222110000000 0000 000111111 11233333 67653 89 999
Q ss_pred EEeCcCcCCCHHHHHHHHHHHHhc-cCCCcEEEEEeCChhHHhhhCCcEEE-EEeCC-EEEEEcCccH
Q 020477 246 ILDEIDSGLDVDALRDVAKAVNGL-LTPKNSLLMITHYRRLLEFIKPTFIH-IMEDG-RIIKTGDASI 310 (325)
Q Consensus 246 lLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvIivtHd~~~~~~~~~d~i~-vl~~G-~iv~~g~~~~ 310 (325)
++|||+.++|+...+..++.+..+ .+.|.||+ +|+...+..+ ++++. +|++| +++..|+.+.
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l-~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAI-IEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHH-HHHHHHHHHTTCSCGGGSCCCH
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHH-HHHHHHHhccCCceeecCCCCH
Confidence 999999999999999999999998 66677754 9999888887 58887 88999 8877676553
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.32 E-value=7.8e-16 Score=134.17 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=41.7
Q ss_pred HHH-HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020477 234 ILQ-LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298 (325)
Q Consensus 234 iAr-aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~ 298 (325)
.|+ +++.+|++++|||+|+++|.++.+.|.+.|.++.++ +.++|. . .. +|+|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~--~--~~-~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE--P--GL-FDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS--T--TT-CSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc--c--CC-ceEEEECC
Confidence 456 788899999999999999999999999988876432 234561 1 22 68887665
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.30 E-value=5.8e-16 Score=141.88 Aligned_cols=146 Identities=20% Similarity=0.226 Sum_probs=91.5
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCC-ccCCC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSP-VEIPG 170 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~-~~~~~ 170 (325)
..+++++++.+++| ++|+||||+|||||+|+|+|. ..+ |.|.++|.++......... ..+.++||.. ...+.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~--~~~--~~i~i~g~~l~~~~~~~~~-~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE--SGL--NFISVKGPELLNMYVGESE-RAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH--TTC--EEEEEETTTTCSSTTHHHH-HHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH--cCC--CEEEEEcHHHHhhhhhHHH-HHHHHHHHHHHhcCCC
Confidence 45889999999999 999999999999999999996 333 7999999877543221111 1233455653 22333
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCc
Q 020477 171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEP 250 (325)
+...+.+......+ . ... . +......++.+. .|||||+||+.|++|+.++|++| |||
T Consensus 106 i~~~Deid~~~~~r----~-----~~~----~-------~~~~~~~~~~l~-~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 106 VIFFDEVDALCPRR----S-----DRE----T-------GASVRVVNQLLT-EMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp EEEEETCTTTCC-----------------------------CTTHHHHHHH-HHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred eEeeehhhhhhccc----C-----CCc----c-------hHHHHHHHHHHH-hhhcccccCCEEEEeecCChhhC--CHh
Confidence 33333222111000 0 000 0 000112223333 49999999999999999999985 999
Q ss_pred Cc------------CCCHHHHHHHHHHHH
Q 020477 251 DS------------GLDVDALRDVAKAVN 267 (325)
Q Consensus 251 ts------------gLD~~~~~~i~~~L~ 267 (325)
+. --|...+..|++.+.
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 74 347777777777654
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.29 E-value=6.2e-15 Score=137.16 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=70.5
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEE-------------------eCCCEEEEEcCCCccHHHHHHHHhCCCCCC--CC
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLV-------------------NEGEVHAIMGKNGSGKSTLSKVLVGHPDYE--VT 134 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i-------------------~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~--p~ 134 (325)
.+|+++||++.|. ++++++++.+ .+|+++||+|+||||||||+++|+|+ +. |+
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~--l~~~~~ 109 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQAL--LSRWPE 109 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHH--HTTSTT
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH--HhhCCC
Confidence 4689999999993 6899999988 99999999999999999999999997 45 89
Q ss_pred ccEEEE---CCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHH
Q 020477 135 EGSVVF---KGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHM 179 (325)
Q Consensus 135 ~G~I~~---~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~ 179 (325)
+|+|.+ +|... +...+.. ++++ |....++.+++.+++..
T Consensus 110 ~G~i~vi~~d~~~~---~~~~~~~--~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 110 HRRVELITTDGFLH---PNQVLKE--RGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CCCEEEEEGGGGBC---CHHHHHH--HTCT-TCTTSGGGBCHHHHHHH
T ss_pred CCeEEEEecCCccC---cHHHHHh--CCEe-ecCCCCCCccHHHHHHH
Confidence 999999 88664 2222322 3344 66555555666655543
No 147
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.26 E-value=1.9e-12 Score=127.00 Aligned_cols=63 Identities=21% Similarity=0.145 Sum_probs=53.9
Q ss_pred EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC
Q 020477 79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148 (325)
Q Consensus 79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~ 148 (325)
.+.+++... ..+|+++||+|++ ++++|+||||||||||+++|+|+ ++|++|+|.++|+++...
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA--LIPDLTLLNFRNTTEAGS 70 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH--HCCCTTTCCCCCTTSCSC
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC--CCCCCCEEEECCEEcccC
Confidence 455555432 3589999999999 99999999999999999999998 679999999999887643
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.24 E-value=3.1e-12 Score=118.84 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=71.6
Q ss_pred eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHH
Q 020477 97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDF 176 (325)
Q Consensus 97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~ 176 (325)
.+++...+|++++|+|+|||||||+++.|+++ +.+..|+|.+.+.|... .. ..+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D~~r--~~---------------------a~e- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADTFR--AA---------------------AIE- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECTTC--HH---------------------HHH-
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcccccc--HH---------------------HHH-
Confidence 34566788999999999999999999999997 55677888887665321 00 000
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH---HHHHHHHhCCCEEEEeCcCc
Q 020477 177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN---EILQLAVLGADLAILDEIDS 252 (325)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv---~iAraL~~~p~lLlLDEPts 252 (325)
.+..+.+.+++. . +. .+|+|+.|++ +|++|+..+|+++|+|||..
T Consensus 150 ------------------------qL~~~~~~~gl~--~----~~-~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 150 ------------------------QLKIWGERVGAT--V----IS-HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------------------------HHHHHHHHHTCE--E----EC-CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------------------------HHHHHHHHcCCc--E----Ee-cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 011123344553 1 12 3799999999 99999999999999999975
No 149
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.23 E-value=3.2e-11 Score=111.48 Aligned_cols=143 Identities=18% Similarity=0.196 Sum_probs=97.6
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
+.++++++.|+. .. ++++|+ +|++++++|+||+||||+++.|+|+ +.+..|+|.+.+.++.. ....
T Consensus 77 ~~~~~l~~~~~~--~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d~~~--~~~~---- 142 (295)
T 1ls1_A 77 TVYEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQR--PAAR---- 142 (295)
T ss_dssp HHHHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCSSC--HHHH----
T ss_pred HHHHHHHHHHCC--CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCccc--HhHH----
Confidence 556788888853 22 788888 9999999999999999999999997 45667889887765422 1000
Q ss_pred EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
+.+. ...+..++. ...... ..+..+.+|.+|+++
T Consensus 143 -----------------~ql~-------------------------~~~~~~~l~--~~~~~~--~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 143 -----------------EQLR-------------------------LLGEKVGVP--VLEVMD--GESPESIRRRVEEKA 176 (295)
T ss_dssp -----------------HHHH-------------------------HHHHHHTCC--EEECCT--TCCHHHHHHHHHHHH
T ss_pred -----------------HHHH-------------------------HhcccCCeE--EEEcCC--CCCHHHHHHHHHHHH
Confidence 0000 001122332 111000 134456689999999
Q ss_pred HHhCCCEEEEeCc-CcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020477 238 AVLGADLAILDEI-DSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281 (325)
Q Consensus 238 L~~~p~lLlLDEP-tsgLD~~~~~~i~~~L~~l~~~g~tvIivtH 281 (325)
...+++++|+||| +.++|.....++.+..+.+.. ..+++++..
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~-~~~~lv~~~ 220 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP-DEVLLVLDA 220 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCC-SEEEEEEEG
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCC-CEEEEEEeC
Confidence 8899999999999 999999999998888776643 345555543
No 150
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.22 E-value=3.8e-15 Score=140.04 Aligned_cols=180 Identities=15% Similarity=0.187 Sum_probs=105.8
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCC-------CEEEEEcCCCccHHHHHHHHhCCCC--CCCCccEEEECCEeCCC
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEG-------EVHAIMGKNGSGKSTLSKVLVGHPD--YEVTEGSVVFKGENLLE 147 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~G-------e~~~lvG~NGsGKSTLl~~l~Gl~~--~~p~~G~I~~~g~~i~~ 147 (325)
+++.++++..|++ ..+++++++.+++| +.++|+||||+|||||+++|+|... ..+++|.+..++.++..
T Consensus 18 ~lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 18 FLRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TTSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred HcCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 3555677766753 56899999999887 8999999999999999999999621 13566766555443311
Q ss_pred CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCC-ChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020477 148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI-GPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG 226 (325)
Q Consensus 148 ~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 226 (325)
.. .......+++++|...+.+ ++.+++..... .....-. ........+...+..+++. . ..+.+. .||+
T Consensus 96 ~~-~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~----~~~~~i~~~~~~~~~~i~~~l~~~~li-~-at~~~~-~Ls~ 165 (334)
T 1in4_A 96 IL-TSLERGDVLFIDEIHRLNK--AVEELLYSAIE----DFQIDIMIGKGPSAKSIRIDIQPFTLV-G-ATTRSG-LLSS 165 (334)
T ss_dssp HH-HHCCTTCEEEEETGGGCCH--HHHHHHHHHHH----TSCCCC---------------CCCEEE-E-EESCGG-GSCH
T ss_pred HH-HHccCCCEEEEcchhhcCH--HHHHHHHHHHH----hcccceeeccCcccccccccCCCeEEE-E-ecCCcc-cCCH
Confidence 10 0111235778887765543 44444422211 1110000 0001112233344455553 1 344454 4999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhh
Q 020477 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFI 289 (325)
Q Consensus 227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~ 289 (325)
|++||+.++ .+||+.+.+.+.++|++..+. + ++|+.+.+..+
T Consensus 166 ~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~i 208 (334)
T 1in4_A 166 PLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMI 208 (334)
T ss_dssp HHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHH
T ss_pred HHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHH
Confidence 999998665 788888888889888877532 3 36777666554
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.19 E-value=1.4e-11 Score=120.48 Aligned_cols=181 Identities=9% Similarity=0.111 Sum_probs=109.4
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG 170 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~ 170 (325)
-..|+++..-+++|+++.|.|++|+|||||+..+++. ..+..| .|.+.+... +..+.....+.....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~---s~~~l~~r~~~~~~~------- 257 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFSLEM---SAQQLVMRMLCAEGN------- 257 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEESSS---CHHHHHHHHHHHHHT-------
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEECCC---CHHHHHHHHHHHHcC-------
Confidence 3568888878999999999999999999999999884 222234 455544322 222211100000000
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH--hCCCEEEEe
Q 020477 171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV--LGADLAILD 248 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~--~~p~lLlLD 248 (325)
.... .+ ..+ ... .+.+.++.+.++.+... .+.....+ .+|.+|.+ +.+|.++ .+|+++|+|
T Consensus 258 ~~~~-~l---------~~g--~l~-~~~~~~~~~a~~~l~~~-~l~i~d~~-~~s~~~i~--~~~~~l~~~~~~~livID 320 (454)
T 2r6a_A 258 INAQ-NL---------RTG--KLT-PEDWGKLTMAMGSLSNA-GIYIDDTP-SIRVSDIR--AKCRRLKQESGLGMIVID 320 (454)
T ss_dssp CCHH-HH---------HTS--CCC-HHHHHHHHHHHHHHHSS-CEEEECCT-TCCHHHHH--HHHHHHHTTTCCCEEEEE
T ss_pred CCHH-HH---------hcC--CCC-HHHHHHHHHHHHHHhcC-CEEEECCC-CCCHHHHH--HHHHHHHHHcCCCEEEEc
Confidence 0000 00 001 111 22234455555555443 22222333 49999987 5667776 689999999
Q ss_pred CcCcCCC--------HHHHHHHHHHHHhccCC-CcEEEEEeC---------C--hh--------HHhhhCCcEEEEEeCC
Q 020477 249 EIDSGLD--------VDALRDVAKAVNGLLTP-KNSLLMITH---------Y--RR--------LLEFIKPTFIHIMEDG 300 (325)
Q Consensus 249 EPtsgLD--------~~~~~~i~~~L~~l~~~-g~tvIivtH---------d--~~--------~~~~~~~d~i~vl~~G 300 (325)
+++...+ ......+.+.|+.++++ +.+||+++| | +. .+... +|.|++|+.+
T Consensus 321 ~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~-aD~vi~l~r~ 399 (454)
T 2r6a_A 321 YLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQD-ADIVAFLYRD 399 (454)
T ss_dssp CGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHH-CSEEEEEEET
T ss_pred cHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhh-CCEEEEEecc
Confidence 9999874 33446777778887655 889999999 3 22 34554 7999999866
Q ss_pred EE
Q 020477 301 RI 302 (325)
Q Consensus 301 ~i 302 (325)
+.
T Consensus 400 ~~ 401 (454)
T 2r6a_A 400 DY 401 (454)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 152
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.19 E-value=4.3e-13 Score=124.33 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=63.5
Q ss_pred EEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEE---CCEeCCCCCHHHHhhccEEEeccCCcc---------
Q 020477 100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVF---KGENLLEMEPEERSLAGLFMSFQSPVE--------- 167 (325)
Q Consensus 100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~i~~~~Q~~~~--------- 167 (325)
|++..|++++|+||||||||||+|+|+|+ ..|++|+|.+ +|+++...... .+...+++++|.|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~--~~~~~G~i~~~~~~g~~~t~~~~~-~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPG--LKLRVSEVSEKLQRGRHTTTTAQL-LKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTT--CCCC-------------CCCSCCE-EECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccc--ccccccceecccCCCCCceeeeEE-EEcCCCCEEEECcCCCccCCCcCC
Confidence 35567999999999999999999999998 6789999999 89887654321 111236788898853
Q ss_pred -------CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020477 168 -------IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG 226 (325)
Q Consensus 168 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 226 (325)
|+.+++ +++.+.. ... ..+...++.++++.+++..+..++.+.. ||+
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~-----~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~~~-lse 294 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSD-----CNH-----VDEPECGVKEAVENGEIAESRYENYVKM-FYE 294 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTT-----CCS-----SSCSSCHHHHHHHHTSSCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHhccc-ccCcCCC-----CcC-----CCCCCcHHHHHHHcCCCCHHHHHHHHHH-HHH
Confidence 334443 3322110 000 0111235678899999954555565543 664
No 153
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.17 E-value=2.1e-12 Score=127.57 Aligned_cols=177 Identities=15% Similarity=0.072 Sum_probs=101.1
Q ss_pred eeEEEEeCCCEEEEEcCCCccHHHHHHHHhC-CCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCC-CcchH
Q 020477 97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG-HPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIP-GVNNI 174 (325)
Q Consensus 97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G-l~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~-~~~~~ 174 (325)
.+++++.++..+.|.|++||||||++++|.. +. +..+.|++.+.+.|.+....... . .-|.+.. ..+..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl-~~~~p~~v~l~liDpK~~el~~~--~------~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSML-YKAQPEDVRFIMIDPKMLELSVY--E------GIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHH-TTCCTTTEEEEEECCSSSGGGGG--T------TCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHH-HhCCCceEEEEEECCchhhhhhh--c------cCCcccceeecCH
Confidence 4788999999999999999999999999875 21 44556778877776543211100 0 0111111 11221
Q ss_pred HHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcccccc--ccCCCCCChHHHHHH----------HHHHHHHhCC
Q 020477 175 DFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN--RNVNEGFSGGERKRN----------EILQLAVLGA 242 (325)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~~LSgGqrQRv----------~iAraL~~~p 242 (325)
+......... ..+...+ .+.+...|.. ++.. ......+|+||+|+. .+|+++...|
T Consensus 230 ~~a~~~L~~~----------~~EmerR-~~ll~~~Gv~-~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP 297 (512)
T 2ius_A 230 KDAANALRWC----------VNEMERR-YKLMSALGVR-NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEP 297 (512)
T ss_dssp HHHHHHHHHH----------HHHHHHH-HHHHHHTTCS-SHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCC
T ss_pred HHHHHHHHHH----------HHHHHHH-HHHHHHcCCc-cHHHHHHHHHHHhhcCCcccccccccccchhccccccccCC
Confidence 1111111100 1222233 2456677764 2211 111123788888753 3566677789
Q ss_pred C-EEEEeCcCcCCCHHHHHHHHHHHHhc---c-CCCcEEEEEeCChh-------HHhhhCCcEEEE
Q 020477 243 D-LAILDEIDSGLDVDALRDVAKAVNGL---L-TPKNSLLMITHYRR-------LLEFIKPTFIHI 296 (325)
Q Consensus 243 ~-lLlLDEPtsgLD~~~~~~i~~~L~~l---~-~~g~tvIivtHd~~-------~~~~~~~d~i~v 296 (325)
. ++++||+++-+|.. ...+.+.|.++ . +-|.++|++||++. +... ...||.+
T Consensus 298 ~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n-~~~RI~l 361 (512)
T 2ius_A 298 YIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKAN-IPTRIAF 361 (512)
T ss_dssp EEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHH-CCEEEEE
T ss_pred cEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhh-cCCeEEE
Confidence 8 89999999998843 23444444443 2 23789999999987 3333 3577754
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.14 E-value=3.6e-11 Score=111.20 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=81.8
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHH
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAY 181 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~ 181 (325)
.+|++++|+|+|||||||+++.|++. +.+++| +|. ++.+++.- ....+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~--------------------lv~~D~~r---~~a~eqL~--- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIA--------------------FITTDTYR---IAAVEQLK--- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEE--------------------EEECCCSS---TTHHHHHH---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEE--------------------EEecCccc---chHHHHHH---
Confidence 47999999999999999999999996 445567 333 33333310 11111111
Q ss_pred HHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020477 182 NARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261 (325)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~ 261 (325)
...+..++.. . . ..+. ..-+.+|++ +.+|+++|+| |+|+|+.....
T Consensus 155 ----------------------~~~~~~gl~~--~---~--~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~ 200 (296)
T 2px0_A 155 ----------------------TYAELLQAPL--E---V--CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQY 200 (296)
T ss_dssp ----------------------HHHTTTTCCC--C---B--CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHH
T ss_pred ----------------------HHHHhcCCCe--E---e--cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHH
Confidence 1112223321 0 0 1233 334566665 4899999999 99999876655
Q ss_pred HHHHHHhcc--CCCcEEEEE--eCChhHHhhhCCcEEEEEeCCEEEEE
Q 020477 262 VAKAVNGLL--TPKNSLLMI--THYRRLLEFIKPTFIHIMEDGRIIKT 305 (325)
Q Consensus 262 i~~~L~~l~--~~g~tvIiv--tHd~~~~~~~~~d~i~vl~~G~iv~~ 305 (325)
+.++.+-+. ....+++++ +|+.+.+..+ ++++..+..+.++..
T Consensus 201 ~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~-~~~~~~l~~~giVlt 247 (296)
T 2px0_A 201 IDELKETIPFESSIQSFLVLSATAKYEDMKHI-VKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH-TTTTSSSCCCEEEEE
T ss_pred HHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH-HHHHhcCCCCEEEEe
Confidence 554443332 122234444 8987777665 355444566666653
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.13 E-value=8.7e-12 Score=110.64 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=42.0
Q ss_pred hCCCEEEEeCcCcCC--CHHHHHHHHHHHHhcc-CCCcEEEEEeCChhH--------HhhhCCcEEEEEeC
Q 020477 240 LGADLAILDEIDSGL--DVDALRDVAKAVNGLL-TPKNSLLMITHYRRL--------LEFIKPTFIHIMED 299 (325)
Q Consensus 240 ~~p~lLlLDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~--------~~~~~~d~i~vl~~ 299 (325)
.+|+++++|+|++.+ |+....+++..|.++. +.|.|||+++|.... +... +|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~-~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHG-VDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHH-SSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccccccccccee-EEEEEEEEE
Confidence 589999999999988 6544455555555554 458899999998664 3455 589988863
No 156
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.12 E-value=3.2e-12 Score=118.77 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=62.9
Q ss_pred EEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEE---CCEeCCCCCHHHHhhccEEEeccCCccCC----Ccc
Q 020477 100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVF---KGENLLEMEPEERSLAGLFMSFQSPVEIP----GVN 172 (325)
Q Consensus 100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~----~~~ 172 (325)
+++.+|++++|+|+||||||||+|+|+|+ ..|..|+|.+ +|+.+.... .+....+++++|.|.+.. .++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~--~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtpg~~~~~l~~lt 243 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE--LGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTPGFSSLEFTDIE 243 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCC--CEEEETTEEEESSCSCSSCCCTTCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc--ccccccceeeecCCCcccccHH--HHhhcCCEEEecCCCccccccccCC
Confidence 45678999999999999999999999997 5789999998 887765432 111112578899987654 456
Q ss_pred hHHHHHHHHH-HHhh--hcCCCC-CChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020477 173 NIDFLHMAYN-ARRR--KLGQPE-IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR 231 (325)
Q Consensus 173 ~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR 231 (325)
+ +++...+. .... .-.... ....+....+.++++.+++.....+ ... .|+.|++||
T Consensus 244 ~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-~y~-~lls~~~~~ 303 (307)
T 1t9h_A 244 E-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-HYV-EFMTEIKDR 303 (307)
T ss_dssp H-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHH-HHHHHHHTT
T ss_pred H-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-HHH-HHHHHHhhc
Confidence 6 55532221 1100 000000 0001112346778899998632223 333 377888773
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.05 E-value=2.9e-10 Score=97.54 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHh
Q 020477 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268 (325)
Q Consensus 230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~ 268 (325)
+.+.+|++++.+|+++++| ||++|..+.+++++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999 999999999999998865
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.03 E-value=3.1e-10 Score=107.21 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhC--CCEEEEeCcCcCC----------CH---HHHHHHHHHHHhc----cCCCcEEEEEeCChhH-----
Q 020477 230 KRNEILQLAVLG--ADLAILDEIDSGL----------DV---DALRDVAKAVNGL----LTPKNSLLMITHYRRL----- 285 (325)
Q Consensus 230 QRv~iAraL~~~--p~lLlLDEPtsgL----------D~---~~~~~i~~~L~~l----~~~g~tvIivtHd~~~----- 285 (325)
|-+.++++++.+ |+++|+||+++.+ |. ...+.+.+.++++ .+.+.|||+++|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 445678888755 9999999999998 32 1222344444444 3448899999996431
Q ss_pred -----------HhhhCCcEEEEEeCCEEEEEcC
Q 020477 286 -----------LEFIKPTFIHIMEDGRIIKTGD 307 (325)
Q Consensus 286 -----------~~~~~~d~i~vl~~G~iv~~g~ 307 (325)
+..+ +|.++.++.++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~-ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFY-ASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHH-CSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhc-cceEEEEEEeeeeecCc
Confidence 3444 68888888776554443
No 159
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.01 E-value=4.6e-12 Score=112.77 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=49.3
Q ss_pred cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH-----
Q 020477 77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE----- 151 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~----- 151 (325)
.|+++|+...|+ . +|++.+ ++++|+||||||||||+++|+|+ +.|++|+|.++|.++...++.
T Consensus 9 ~l~l~~~~~~~~---~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (227)
T 1qhl_A 9 SLTLINWNGFFA---R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTA--LIPDLTLLHFRNTTEAGATSGSRDKG 76 (227)
T ss_dssp EEEEEEETTEEE---E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHH--HSCCTTTC------------------
T ss_pred EEEEEeeecccC---C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcc--cccCCCeEEECCEEcccCCccccccc
Confidence 588888876552 1 566677 89999999999999999999998 678999999999987443321
Q ss_pred --HHhhccEEEeccC
Q 020477 152 --ERSLAGLFMSFQS 164 (325)
Q Consensus 152 --~~~~~~i~~~~Q~ 164 (325)
.....++++++|+
T Consensus 77 ~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 77 LHGKLKAGVCYSMLD 91 (227)
T ss_dssp CGGGBCSSEEEEEEE
T ss_pred hhhHhhcCcEEEEEe
Confidence 1112467888874
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.00 E-value=2.9e-11 Score=104.53 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=43.3
Q ss_pred EEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccC
Q 020477 99 NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEI 168 (325)
Q Consensus 99 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~ 168 (325)
|+++.+|++++|+||||||||||+++|+|+ + | .+.+.+..+....... ...+++++||++..+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~--~-~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA--L-A---EIKISISHTTRPKRPG-DQEGVDYFFIDETRF 63 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH--S-S---SEEECCCEECSCCCTT-CCBTTTBEECCHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh--C-C---CeEEeceeccCCCchh-HhcCceEEeccHHHH
Confidence 577889999999999999999999999996 3 3 5778877665433211 123456778876543
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.93 E-value=6.7e-13 Score=121.14 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=92.4
Q ss_pred EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020477 79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL 158 (325)
Q Consensus 79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 158 (325)
+++++.+.|.. ..+++++++++++| ++|+||||+|||||+++|++. . ..|.|.+++.++......... ..+
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~--~--~~~~i~~~~~~~~~~~~~~~~-~~i 121 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE--A--RVPFITASGSDFVEMFVGVGA-ARV 121 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH--T--TCCEEEEEHHHHHHSTTTHHH-HHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH--c--CCCEEEecHHHHHHHHhhHHH-HHH
Confidence 44566666642 46899999999999 899999999999999999996 2 278999988664321111110 112
Q ss_pred EEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020477 159 FMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237 (325)
Q Consensus 159 ~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra 237 (325)
..+||... ..+.+...+.+......... ... ....+....+... +. .|||||+||+.+++|
T Consensus 122 ~~~~~~~~~~~~~i~~iDeid~l~~~~~~--~~~-~~~~~~~~~~~~l--------------l~-~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 122 RDLFETAKRHAPCIVFIDEIDAVGRKRGS--GVG-GGNDEREQTLNQL--------------LV-EMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHHHTSCSEEEEEETHHHHHCC-----------CHHHHHHHHHH--------------HH-HHTTCCTTCCEEEEE
T ss_pred HHHHHHHHhcCCcEEehhhhHhhhccccc--ccC-CcchHHHHHHHHH--------------HH-HHhCCCCCCCEEEEE
Confidence 33455542 23334444444322110000 000 0011111111111 11 389999999999999
Q ss_pred HHhCCCEEEEeCcCc------------CCCHHHHHHHHHHH
Q 020477 238 AVLGADLAILDEIDS------------GLDVDALRDVAKAV 266 (325)
Q Consensus 238 L~~~p~lLlLDEPts------------gLD~~~~~~i~~~L 266 (325)
+.++|++ +|++.- -.|.+.+..+++..
T Consensus 184 ~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 222 (278)
T 1iy2_A 184 ATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 222 (278)
T ss_dssp EESCTTS--SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred ecCCchh--CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 9999987 677643 23556666665543
No 162
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.93 E-value=2.2e-10 Score=101.46 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=22.9
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHh-CC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV-GH 128 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~-Gl 128 (325)
.+..+++||++++|++++|+||||||||||+++|+ |+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999 97
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.89 E-value=6.7e-13 Score=119.30 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=93.2
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
.+++++.+.|.+ ..+++++++++++| ++|+||||+|||||+++|++. . ..|.|.++|.++......... ..
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~--~--~~~~i~~~~~~~~~~~~~~~~-~~ 96 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE--A--RVPFITASGSDFVEMFVGVGA-AR 96 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH--T--TCCEEEEEHHHHHHSCTTHHH-HH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH--h--CCCEEEeeHHHHHHHHhhHHH-HH
Confidence 345566655642 46899999999999 999999999999999999996 2 378899988654321111110 11
Q ss_pred EEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 158 LFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 158 i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
+..+||... ..+.+...+.+...........+ ....+....+...+ . .|||||+||+.|++
T Consensus 97 i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~---~~~~~~~~~~~~ll--------------~-~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 97 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG---GGNDEREQTLNQLL--------------V-EMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHHHTTSSSEEEEEETHHHHHC------------CHHHHHHHHHHH--------------H-HHHTCCTTCCEEEE
T ss_pred HHHHHHHHHhcCCeEEEehhhhhhhcccCcccc---ccchHHHHHHHHHH--------------H-HHhCCCCCCCEEEE
Confidence 233455532 23334444444222111000000 00111111111111 1 38999999999999
Q ss_pred HHHhCCCEEEEeCcCcC------------CCHHHHHHHHHHH
Q 020477 237 LAVLGADLAILDEIDSG------------LDVDALRDVAKAV 266 (325)
Q Consensus 237 aL~~~p~lLlLDEPtsg------------LD~~~~~~i~~~L 266 (325)
|+.++|++ +|++.-- .|.+.+..+++..
T Consensus 159 a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 159 AATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp EEESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred EccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 99999987 6877642 3666666666543
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.87 E-value=3.7e-09 Score=90.86 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhc
Q 020477 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269 (325)
Q Consensus 232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l 269 (325)
...|++++.+|+++++| ||++|..+.+++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999 9999999999999888764
No 165
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.85 E-value=1.4e-10 Score=104.70 Aligned_cols=53 Identities=30% Similarity=0.428 Sum_probs=35.4
Q ss_pred CCcEEEEEE-EEEECCCcccceeeeEEEEeC---CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 75 QPLLQVTGL-TAVIAESKQEILKGVNLLVNE---GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 75 ~~~l~~~~l-s~~y~~~~~~iL~~vsl~i~~---Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++++++|+ +++|+ +++.+|+++||+|.+ |++++|+|++||||||+.++|++.
T Consensus 15 ~~~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 15 SALLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999 99993 246799999999999 999999999999999999999984
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.85 E-value=7.4e-10 Score=111.89 Aligned_cols=165 Identities=12% Similarity=0.072 Sum_probs=99.3
Q ss_pred EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCc-cEEEECCEeCCCCCHHHHhhccEE
Q 020477 81 TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE-GSVVFKGENLLEMEPEERSLAGLF 159 (325)
Q Consensus 81 ~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~-G~I~~~g~~i~~~~~~~~~~~~i~ 159 (325)
++++..|+. ..+++++++.+.+|+.++|+||||+|||||+++|+|+ ..+.. |.+.+++.+..... ..+.
T Consensus 38 ~~l~~i~G~--~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~~~~~~~~~~~~~~~~------p~i~ 107 (604)
T 3k1j_A 38 KLIDQVIGQ--EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL--LPTETLEDILVFPNPEDENM------PRIK 107 (604)
T ss_dssp SHHHHCCSC--HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT--SCCSSCEEEEEECCTTCTTS------CEEE
T ss_pred cccceEECc--hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhcc--CCcccCCeEEEeCCcccccC------CcEE
Confidence 334444543 5689999999999999999999999999999999997 44555 78888876654322 1244
Q ss_pred EeccCCccCCCcchHHHHHHHHHHHhhhcC-----------------------CCCCC-hHHHHHhHHHHHHhcCCcccc
Q 020477 160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLG-----------------------QPEIG-PIEFYAYLYPKLERLSMKTDF 215 (325)
Q Consensus 160 ~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~~~l~~~~l~~~~ 215 (325)
++++... ...+............ ..... ..+......+++..+..
T Consensus 108 ~~p~g~~-------~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~---- 176 (604)
T 3k1j_A 108 TVPACQG-------RRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH---- 176 (604)
T ss_dssp EEETTHH-------HHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC----
T ss_pred EEecchH-------HHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe----
Confidence 4444320 1111110000000000 00000 00000001111111111
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHh
Q 020477 216 LNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268 (325)
Q Consensus 216 ~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~ 268 (325)
.....+ .+|+|++|++..++....++.+|+|||... |++.....+++.|.+
T Consensus 177 ~~~~~g-~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 177 DPFQSG-GLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCC-----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred chhhcC-CccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 111113 489999999999999999999999999988 899999999999985
No 167
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.84 E-value=1.7e-11 Score=117.00 Aligned_cols=154 Identities=15% Similarity=0.029 Sum_probs=87.9
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCcc-CCC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVE-IPG 170 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~-~~~ 170 (325)
..+++++++.+++|++++|+||||||||||+++|+|. ..|.+..-+ ........ .++++||.... +..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-----~~g~~~~~~--~~~~~~~~----~lg~~~q~~~~l~dd 224 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-----CGGKALNVN--LPLDRLNF----ELGVAIDQFLVVFED 224 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-----HCCEEECCS--SCTTTHHH----HHGGGTTCSCEEETT
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-----cCCcEEEEe--ccchhHHH----HHHHhcchhHHHHHH
Confidence 3589999999999999999999999999999999994 467776521 11111111 13345665431 222
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHH---------------hcCCccccccccCCCCCChHHHHHHHHH
Q 020477 171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE---------------RLSMKTDFLNRNVNEGFSGGERKRNEIL 235 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~l~~~~~~~~~~~~LSgGqrQRv~iA 235 (325)
.+..... . ..............+...++ ..-+.+..++.... .+++|++||++.+
T Consensus 225 ~~~~~~~-----~----r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~-~l~~~~~~rl~~~ 294 (377)
T 1svm_A 225 VKGTGGE-----S----RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEY-SVPKTLQARFVKQ 294 (377)
T ss_dssp CCCSTTT-----T----TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSC-CCCHHHHTTEEEE
T ss_pred HHHHHHH-----H----hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHH-hhcHHHHHHHhhh
Confidence 2111000 0 00000000000011222232 01111122334443 3899999999998
Q ss_pred HHHHhCCCEEE-EeCcCcCCCHHHHHHHHHHHHhccCCCcEEE
Q 020477 236 QLAVLGADLAI-LDEIDSGLDVDALRDVAKAVNGLLTPKNSLL 277 (325)
Q Consensus 236 raL~~~p~lLl-LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvI 277 (325)
.+++..|++++ ||+|+. ..++++.++|.+++
T Consensus 295 ~~l~~~pDLliyLd~~~~-----------~l~~RL~~Rg~t~~ 326 (377)
T 1svm_A 295 IDFRPKDYLKHCLERSEF-----------LLEKRIIQSGIALL 326 (377)
T ss_dssp EECCCCHHHHHHHHTCTH-----------HHHTTCTTCHHHHH
T ss_pred hccCCCCCeEEEEeCCHH-----------HHHHHHHHcCccHH
Confidence 88889999988 999987 24566666665543
No 168
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.73 E-value=1.2e-08 Score=105.80 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCc-CCCHHHHHHHHHHHHhccCCCcEEEE-EeCChhHHhhhC
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDS-GLDVDALRDVAKAVNGLLTPKNSLLM-ITHYRRLLEFIK 290 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvIi-vtHd~~~~~~~~ 290 (325)
+|+|+.+|..++++++.+++++|+|||.. +||......+++.+........+|++ +||+.+.+..+.
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~ 259 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYF 259 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHT
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHh
Confidence 79999999999999999999999999997 99988777777777666555567777 499987666553
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.69 E-value=1.4e-09 Score=94.20 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=33.6
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020477 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146 (325)
Q Consensus 94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~ 146 (325)
+..+-.++.++|++++|+|+||||||||+++|+|. + |.+.++|.++.
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~--~----g~~~i~~d~~~ 64 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE--T----GLEFAEADAFH 64 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHH--H----CCEEEEGGGGS
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh--h----CCeEEcccccc
Confidence 33334466789999999999999999999999995 2 88999987764
No 170
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.65 E-value=2.1e-08 Score=84.91 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=39.1
Q ss_pred EEEEEEEEECCCcccce--eeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc
Q 020477 79 QVTGLTAVIAESKQEIL--KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136 (325)
Q Consensus 79 ~~~~ls~~y~~~~~~iL--~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G 136 (325)
.++.|... +...+ +++++++.+| +++|+||||||||||+++|.++ +.+..|
T Consensus 3 ~i~~l~i~----nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~--l~~~~~ 55 (182)
T 3kta_A 3 YIEKLELK----GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV--LGGLSA 55 (182)
T ss_dssp EEEEEEEE----SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH--TTCCCT
T ss_pred eEEEEEEe----CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH--HcCCcc
Confidence 34555543 12356 7899999999 9999999999999999999996 334444
No 171
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.63 E-value=2.6e-09 Score=96.12 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=44.8
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHh---CCCCCCCCccEEE--------ECCEeCCCC-CHHHHhhccEEEeccC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLV---GHPDYEVTEGSVV--------FKGENLLEM-EPEERSLAGLFMSFQS 164 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~---Gl~~~~p~~G~I~--------~~g~~i~~~-~~~~~~~~~i~~~~Q~ 164 (325)
.+|++++|+|||||||||++++|+ |+ ..+++|.|. .+|.++... ...... ..+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~--~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNW--RLLDSGAIYRVLALAALHHQVDISTEEALVPLA-AHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTC--EEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHH-HTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCC--CcCCCCceehHhHHHHHHcCCCcccHHHHHHHH-HcCCEEEec
Confidence 789999999999999999999999 97 567999999 899887432 222222 234555654
No 172
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.62 E-value=6.6e-09 Score=88.88 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
|++++|+||||||||||+++|+|+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999999999997
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.62 E-value=2.8e-08 Score=97.48 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcC----------cCCCHHHHHHHHHHHHhcc----CCCcEEEEEeCChhHH
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEID----------SGLDVDALRDVAKAVNGLL----TPKNSLLMITHYRRLL 286 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPt----------sgLD~~~~~~i~~~L~~l~----~~g~tvIivtHd~~~~ 286 (325)
.|++++|..+++|....|.+|++||+. .|.|....+.+.+++..+. ..+..||.+||+++.+
T Consensus 92 ~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 92 VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 367889999999999999999999994 4677776666666666552 2367889999987654
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.62 E-value=8e-08 Score=90.72 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEe-CcCcCCCHHHHHHHHHHHHhccCCCcEEEEEe--CChh
Q 020477 223 GFSGGERKRNEILQLAVLGADLAILD-EIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT--HYRR 284 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL~~~p~lLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~tvIivt--Hd~~ 284 (325)
.+|+|++|++. +.+...++-++++| +|++++|......+++.+.++.. +..+|+|. ||+.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 48999999876 55555677889999 99999999998888888877643 56788888 8864
No 175
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.61 E-value=1.9e-07 Score=88.65 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=79.4
Q ss_pred CCCE-EEEEcCCCccHHHHHHHHhCCCCC---------CCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcch
Q 020477 104 EGEV-HAIMGKNGSGKSTLSKVLVGHPDY---------EVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNN 173 (325)
Q Consensus 104 ~Ge~-~~lvG~NGsGKSTLl~~l~Gl~~~---------~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~ 173 (325)
.|-. ++|+|++|||||||++.|+|.... .++.|.|.++|.++.-++ -.+++.+.|. ..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~D-------T~G~i~~lp~-----~l 244 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVD-------TVGFIRGIPP-----QI 244 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEE-------CCCBCSSCCG-----GG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEe-------CCCchhcCCH-----HH
Confidence 3444 999999999999999999996211 156788999886541100 0112222111 01
Q ss_pred HHHHHHHHH-HHhhh-----cCCCCCC--hHHHHHhHHHHHHhcCCcccc---ccccCCCCCChHHHHHHHHH----HHH
Q 020477 174 IDFLHMAYN-ARRRK-----LGQPEIG--PIEFYAYLYPKLERLSMKTDF---LNRNVNEGFSGGERKRNEIL----QLA 238 (325)
Q Consensus 174 ~~~~~~~~~-~~~~~-----~~~~~~~--~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~LSgGqrQRv~iA----raL 238 (325)
.+.+..... ..... ....... ..+....+.+.++.++..... ...+.. .+|+|++||+.++ +++
T Consensus 245 ve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~D-l~~~~~~~~~~~~~~l~~~l 323 (364)
T 2qtf_A 245 VDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID-KINGDLYKKLDLVEKLSKEL 323 (364)
T ss_dssp HHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGG-GCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCC-CCCchHHHHHHHHHHHHHHh
Confidence 111111110 00000 0000000 111222344556666543110 022232 3788899988887 554
Q ss_pred -HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc
Q 020477 239 -VLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270 (325)
Q Consensus 239 -~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~ 270 (325)
..+|++ +|+|++|..+...+.+.|.++.
T Consensus 324 ~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 324 YSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 334444 8999999999999999988764
No 176
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.60 E-value=3.8e-08 Score=93.01 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=32.4
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE-EECCE
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV-VFKGE 143 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I-~~~g~ 143 (325)
-+++|+++.|.||+|||||||+..+++. ..+..|.+ +++++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E 98 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAE 98 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecc
Confidence 4889999999999999999999999985 33345654 55544
No 177
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.57 E-value=2.6e-08 Score=86.16 Aligned_cols=70 Identities=9% Similarity=-0.013 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH--hhhCCcEEEEEe
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL--EFIKPTFIHIME 298 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~--~~~~~d~i~vl~ 298 (325)
.+.|+.+|..+++.+..+|+.+..+ .+.++|...+.+.+.+.... +.++|+.+|.+... ... +|.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~--~~~vv~~~~~l~e~~~~~~-~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQT--APYTLFVVPLLIENKLTAL-CDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCC--SSEEEEECTTTTTTTCGGG-CSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcC--CCEEEEEechhhhcCcHhh-CCEEEEEE
Confidence 4678999999999888888754333 45677877777777776542 45788888976554 333 58887775
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.56 E-value=1.4e-07 Score=88.97 Aligned_cols=57 Identities=11% Similarity=0.080 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC-cEEEEEeC
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK-NSLLMITH 281 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvIivtH 281 (325)
.++.++|+..+++..+.+|+++||.-..+..|... ...+++++.+...| .+|+++|.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999888885444455443 45566777776554 58888887
No 179
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.55 E-value=2.3e-09 Score=92.74 Aligned_cols=60 Identities=30% Similarity=0.374 Sum_probs=44.0
Q ss_pred EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE--EECCEeC
Q 020477 81 TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV--VFKGENL 145 (325)
Q Consensus 81 ~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I--~~~g~~i 145 (325)
+|++..++ ...+.+..++..++|++++|+|+||||||||+++|++. +. ..|.+ .++|.++
T Consensus 3 ~~~~~~~~--~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~--l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHEC--SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQM--LY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------C--CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHH--HH-HTTCCEEEEEHHHH
T ss_pred CCCccccc--ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH--HH-hcCceEEEecCchh
Confidence 46666554 35677888888899999999999999999999999996 33 56887 8887654
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.54 E-value=3e-08 Score=101.25 Aligned_cols=137 Identities=16% Similarity=0.111 Sum_probs=80.8
Q ss_pred EEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHH
Q 020477 99 NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLH 178 (325)
Q Consensus 99 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~ 178 (325)
++++++|..++|+|++|+|||||++.|++.....+..|+| .+|..+......++. .++.+.+|...++.. +
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~-~giti~~~~~~~~~~-~------ 73 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKL-HRTTVRTGVAPLLFR-G------ 73 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHH-TTSCCSCEEEEEEET-T------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHh-cCCeEEecceEEeeC-C------
Confidence 4567889999999999999999999999752122467888 677777766655443 234444444322110 0
Q ss_pred HHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHH
Q 020477 179 MAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258 (325)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~ 258 (325)
....++|..-...++ ......+-..+.-++++| |+.|+++.+
T Consensus 74 --------------------------------~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt 115 (665)
T 2dy1_A 74 --------------------------------HRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGT 115 (665)
T ss_dssp --------------------------------EEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHH
T ss_pred --------------------------------EEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhH
Confidence 000122221111121 112222335688899999 999999887
Q ss_pred HHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020477 259 LRDVAKAVNGLLTPKNSLLMITHYRRLL 286 (325)
Q Consensus 259 ~~~i~~~L~~l~~~g~tvIivtHd~~~~ 286 (325)
++.+ +.+.+ .+..+|++.|.++..
T Consensus 116 ~~~~-~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERAW-TVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHH-HHHHH---TTCCEEEEEECGGGC
T ss_pred HHHH-HHHHH---ccCCEEEEecCCchh
Confidence 7443 33333 367788888887753
No 181
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.51 E-value=4.7e-08 Score=84.15 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=28.4
Q ss_pred EEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc
Q 020477 100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136 (325)
Q Consensus 100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G 136 (325)
++|.+|++++|+||||||||||+++|+++ +.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~--~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED--PSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHC--TTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHh--hCCCeE
Confidence 46889999999999999999999999997 445555
No 182
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.47 E-value=8.6e-10 Score=102.94 Aligned_cols=57 Identities=21% Similarity=0.159 Sum_probs=42.4
Q ss_pred EEEEECCCcccceeeeEEEEeCCC------EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC
Q 020477 83 LTAVIAESKQEILKGVNLLVNEGE------VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK 141 (325)
Q Consensus 83 ls~~y~~~~~~iL~~vsl~i~~Ge------~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~ 141 (325)
+++.|+ ++..|++++..+.+++ ++||+||||||||||+++|.++....|+.|.+.+-
T Consensus 66 l~~~~~--~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 66 LSFYVT--ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp HHHHHH--HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred HHHhhc--chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 344453 3567888888887777 99999999999999999999973222556665443
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=6.1e-08 Score=83.65 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=24.0
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
...+++|+||++.+|++++|+|++||||||+.+.|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999999999999999974
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.46 E-value=1.6e-07 Score=88.20 Aligned_cols=129 Identities=13% Similarity=0.104 Sum_probs=77.7
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcc
Q 020477 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN 172 (325)
Q Consensus 93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~ 172 (325)
.-|+.+.--+.+|+++.|.|++|+|||||+.-++.. .....+.|.+. ... ++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~f-------------------SlE-------ms 85 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVF-------------------SLE-------MS 85 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEE-------------------ESS-------SC
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEE-------------------eCC-------CC
Confidence 456666657899999999999999999999888763 11111222221 111 11
Q ss_pred hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCc
Q 020477 173 NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252 (325)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPts 252 (325)
..+. ..++......+.+. .+.. + .||.++.+|+..|...+.+++++|.|+|..
T Consensus 86 ~~ql----------------------~~Rlls~~~~v~~~-~l~~---g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~ 138 (338)
T 4a1f_A 86 AEQL----------------------ALRALSDLTSINMH-DLES---G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYV 138 (338)
T ss_dssp HHHH----------------------HHHHHHHHHCCCHH-HHHH---T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTC
T ss_pred HHHH----------------------HHHHHHHhhCCCHH-HHhc---C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCC
Confidence 1111 11111111122221 1111 2 499999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhccC-C-CcEEEEEeC
Q 020477 253 GLDVDALRDVAKAVNGLLT-P-KNSLLMITH 281 (325)
Q Consensus 253 gLD~~~~~~i~~~L~~l~~-~-g~tvIivtH 281 (325)
.+| .|...++++++ . +..+|||-|
T Consensus 139 si~-----~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 139 RIE-----QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CHH-----HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred cHH-----HHHHHHHHHHHhcCCCCEEEEec
Confidence 433 44444444432 3 567887764
No 185
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.44 E-value=1.3e-06 Score=82.05 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=37.2
Q ss_pred hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC---CCcEEEEEeCChhHHhh
Q 020477 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLT---PKNSLLMITHYRRLLEF 288 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~---~g~tvIivtHd~~~~~~ 288 (325)
.+|.+|++||+... |......+.+.+.++.. .+.++|++||+.++...
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 45889999999876 88888888888766543 46789999998865443
No 186
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.40 E-value=3.5e-08 Score=92.07 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=44.2
Q ss_pred eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC
Q 020477 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE 147 (325)
Q Consensus 95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~ 147 (325)
+++++|++++|++++|+|+||+||||++..|++. +.+..|+|.+.+.|+..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~--l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY--YAELGYKVLIAAADTFR 145 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCCSC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCcc
Confidence 3688999999999999999999999999999997 55678999998877643
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.37 E-value=9.9e-08 Score=81.10 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCCCCCCC-CccEEEE
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-TEGSVVF 140 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-~~G~I~~ 140 (325)
+|++++|+||||||||||+++|+++ +++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~--~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK--HPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH--CTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--CCccEEEeeec
Confidence 6899999999999999999999996 332 4555544
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.33 E-value=1.4e-07 Score=83.44 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=34.4
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i 145 (325)
+.++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 4578999999999999999999999994 68899988764
No 189
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.32 E-value=4.4e-09 Score=103.73 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=81.5
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 157 (325)
.+++++...|.+ ..+++++++.+++| +.|+||||+|||||+++|++. . ..+.+.+++.++......... ..
T Consensus 41 ~~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~--~--~~~~i~i~g~~~~~~~~g~~~-~~ 111 (499)
T 2dhr_A 41 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE--A--RVPFITASGSDFVEMFVGVGA-AR 111 (499)
T ss_dssp HHHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH--T--TCCEEEEEGGGGTSSCTTHHH-HH
T ss_pred HHHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH--h--CCCEEEEehhHHHHhhhhhHH-HH
Confidence 334445444432 45789999999999 899999999999999999996 2 367899998776442211100 01
Q ss_pred EEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020477 158 LFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ 236 (325)
Q Consensus 158 i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr 236 (325)
+..+||... ..+.+...+.+....... ..+. .....+....+..++. .||||++|+..|++
T Consensus 112 v~~lfq~a~~~~p~il~IDEId~l~~~r--~~~~-~~~~~e~~~~l~~LL~---------------~Ldg~~~~~~vivi 173 (499)
T 2dhr_A 112 VRDLFETAKRHAPCIVFIDEIDAVGRKR--GSGV-GGGNDEREQTLNQLLV---------------EMDGFEKDTAIVVM 173 (499)
T ss_dssp HHHHTTTSSSSSSCEEEEECGGGTCCCS--SSST-TTSSHHHHHHHHHHHH---------------HGGGCCSSCCCEEE
T ss_pred HHHHHHHHHhcCCCEEEEehHHHHHHhh--ccCc-CCCcHHHHHHHHHHHH---------------HhcccccCccEEEE
Confidence 223355542 222222222221110000 0000 0001111111222211 27888888888888
Q ss_pred HHHhCCCEEEEeCcCc
Q 020477 237 LAVLGADLAILDEIDS 252 (325)
Q Consensus 237 aL~~~p~lLlLDEPts 252 (325)
|..++|++ |||+.-
T Consensus 174 Aatn~p~~--LD~aLl 187 (499)
T 2dhr_A 174 AATNRPDI--LDPALL 187 (499)
T ss_dssp ECCSCGGG--SCTTTS
T ss_pred EecCChhh--cCcccc
Confidence 88888887 788765
No 190
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.27 E-value=2.7e-07 Score=80.13 Aligned_cols=51 Identities=18% Similarity=0.312 Sum_probs=35.2
Q ss_pred EEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-----------CCCccEEEECCEeCCCCCHH
Q 020477 99 NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-----------EVTEGSVVFKGENLLEMEPE 151 (325)
Q Consensus 99 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-----------~p~~G~I~~~g~~i~~~~~~ 151 (325)
|+...+|++++|+||||||||||++.|++.... +|..|+ ++|.+....+..
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~ 74 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTE 74 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHH
Confidence 344558999999999999999999999986210 155665 566665444443
No 191
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.26 E-value=1.4e-07 Score=81.66 Aligned_cols=46 Identities=26% Similarity=0.115 Sum_probs=37.2
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~ 149 (325)
.++|++++|+|+||||||||+++|+++ +.+..|.|.+.+.+....+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~--~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT--LREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGCCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH--HhhcCCeEEEeccCcccCC
Confidence 567999999999999999999999996 4556788887766544433
No 192
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.21 E-value=3.6e-06 Score=81.46 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN 144 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~ 144 (325)
++.+++++|+|||||||++..|++. +.+..++|.+-+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~--l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF--YKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH--HHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEecC
Confidence 5789999999999999999999986 44556677665554
No 193
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.20 E-value=5.4e-06 Score=77.80 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=25.6
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988873
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.19 E-value=4.4e-06 Score=77.65 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=37.5
Q ss_pred HHHHHHHHHHH---hCCCEEEEeCcCcCCCH--------HH----HHHHHHHHHhccCC-CcEEEEEeCCh
Q 020477 229 RKRNEILQLAV---LGADLAILDEIDSGLDV--------DA----LRDVAKAVNGLLTP-KNSLLMITHYR 283 (325)
Q Consensus 229 rQRv~iAraL~---~~p~lLlLDEPtsgLD~--------~~----~~~i~~~L~~l~~~-g~tvIivtHd~ 283 (325)
.+.+..++.++ .+++++|+|+.++-... .. ..+++..|+.++++ +.+||++.|-.
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 45677777777 57999999999987643 11 24445555555544 78999998854
No 195
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.15 E-value=1e-06 Score=76.63 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++|++++|+||||||||||++.|++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 57999999999999999999999996
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.15 E-value=4.1e-07 Score=76.37 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=32.5
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~ 146 (325)
.+|++++|+|+||||||||+++|++. + |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~--~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ--L----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH--H----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh--h----CcEEEeCcccc
Confidence 46899999999999999999999985 2 78888876654
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.13 E-value=2.8e-06 Score=78.76 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcE--EEEEeC
Q 020477 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNS--LLMITH 281 (325)
Q Consensus 224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~t--vIivtH 281 (325)
||.++++|+..|...+.++++++.|+|...+ ..+...++++.+ .+.. +|+|-|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~-----~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQSV-----NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCBH-----HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCCH-----HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8899999999999888889999999886442 334444444432 2556 888866
No 198
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.11 E-value=4.6e-07 Score=90.41 Aligned_cols=43 Identities=28% Similarity=0.412 Sum_probs=36.5
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEE-ECCEeC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVV-FKGENL 145 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~-~~g~~i 145 (325)
.+++|++++|+|+||||||||+++|+|. +.|++| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~--L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR--LMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH--HHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh--hcccCCceEEEECCcHH
Confidence 5789999999999999999999999997 556776 675 888654
No 199
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.10 E-value=2.2e-06 Score=80.14 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999984
No 200
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.09 E-value=1.7e-06 Score=83.96 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=48.7
Q ss_pred hCCCEEEEeCcCcCCCH-HHHHHHHHHHHhccCCCcEEEEEeCCh-hHHhhhCCcEEEE-EeCCEEEEEcCccH
Q 020477 240 LGADLAILDEIDSGLDV-DALRDVAKAVNGLLTPKNSLLMITHYR-RLLEFIKPTFIHI-MEDGRIIKTGDASI 310 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~-~~~~~i~~~L~~l~~~g~tvIivtHd~-~~~~~~~~d~i~v-l~~G~iv~~g~~~~ 310 (325)
.+|++|++||+..-.+. ..++.++..+..+.+.|..||++||+. ..+..+ .+++.- +..|.++...+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l-~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF-QDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSC-CHHHHHHHHSSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH-HHHHHhhccCCeEEEeCCCCH
Confidence 48999999999887764 678889999988877788999999973 322222 232221 45577666666654
No 201
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.08 E-value=5.3e-06 Score=80.07 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=46.9
Q ss_pred EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020477 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146 (325)
Q Consensus 80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~ 146 (325)
.+++++.|+.. . ++++|+ +|++++++|+|||||||++..|++. +.+..|+|.+.+.|+.
T Consensus 79 ~~~L~~~~~~~--~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECCSS
T ss_pred HHHHHHHhCCC--c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEeecccc
Confidence 34566677532 2 678887 8999999999999999999999997 5567789988776654
No 202
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.01 E-value=2.1e-07 Score=81.42 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCCCC-CCCCccEEEE
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVF 140 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~p~~G~I~~ 140 (325)
+.+++|+|++||||||++++|++... ..++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 56899999999999999999997411 1467888876
No 203
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.01 E-value=3.1e-06 Score=73.08 Aligned_cols=28 Identities=36% Similarity=0.369 Sum_probs=26.3
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++++|++++|+|++|||||||++.|++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5778999999999999999999999996
No 204
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.98 E-value=3.6e-06 Score=69.50 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.5
Q ss_pred eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
+++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 45566777665 999999999999999999874
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.97 E-value=6.2e-05 Score=68.30 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH----------HHHHHHHHHHHhccC----CCcEEEEEeCChh
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDV----------DALRDVAKAVNGLLT----PKNSLLMITHYRR 284 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~----------~~~~~i~~~L~~l~~----~g~tvIivtHd~~ 284 (325)
+++++.|..++.+...+|.+|++||+.+-++. .....++..+..+.. .+..||.+|++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 56778888888888889999999999877653 333445566655532 2346777888754
No 206
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.95 E-value=2.8e-06 Score=70.87 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.|++++|+|+||||||||+++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999995
No 207
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.93 E-value=7.8e-07 Score=84.50 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=46.4
Q ss_pred cEEEEEEEEEECCCccccee--------------eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 77 LLQVTGLTAVIAESKQEILK--------------GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 77 ~l~~~~ls~~y~~~~~~iL~--------------~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-+.++||++.|+. .+..|+ |+.+.|.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~-er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN-SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC-SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC-CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 5788999999985 467888 89999999999999999999999999999884
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.90 E-value=5.3e-07 Score=84.59 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=48.7
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i 145 (325)
++.+++.+.|+ .+.+++++++.+.+|.+++|+|++|+|||||++.|+|. +.+..|+|.+-+.+.
T Consensus 31 ie~~~~~~~~~--~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~--~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 31 VESRHPRHQAL--STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML--LIREGLKVAVIAVDP 94 (341)
T ss_dssp HHCCCHHHHHH--HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH--HHHTTCCEEEEEECC
T ss_pred hhcCCchhhhH--HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEeecC
Confidence 33444444553 25688999999999999999999999999999999986 445567777655544
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.89 E-value=9.4e-06 Score=84.54 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=27.1
Q ss_pred EEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
|.+++|+.+.|+||||+|||||+++|+|.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999996
No 210
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.88 E-value=9.7e-05 Score=65.02 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=30.0
Q ss_pred hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC--CCcEEEEEeC
Q 020477 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLT--PKNSLLMITH 281 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~--~g~tvIivtH 281 (325)
.+++++|+..+.+.++......+..++..+.. ...++|+++|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888766666555543321 1248899999
No 211
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.76 E-value=4.3e-06 Score=78.68 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=33.0
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i 145 (325)
.++.+++|+|++|||||||++.|+|. ..+..|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~--~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM--LTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH--hhhcCCeEEEEeecC
Confidence 45789999999999999999999996 445667777766544
No 212
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.74 E-value=9.5e-06 Score=71.73 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=30.6
Q ss_pred ceeeeEEEEe---CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC
Q 020477 94 ILKGVNLLVN---EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK 141 (325)
Q Consensus 94 iL~~vsl~i~---~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~ 141 (325)
-|.++|+.+. +|.+++|.|++||||||+++.|+.. +.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~--l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR--LVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH--HTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH--Hhc-CCCceee
Confidence 4677777776 8999999999999999999999996 444 4566543
No 213
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.71 E-value=4.4e-05 Score=73.96 Aligned_cols=161 Identities=14% Similarity=0.169 Sum_probs=83.2
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG 170 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~ 170 (325)
-..|+.+.--+.+|+++.|.|++|+|||||+..++.. .....| .|.+..- ..+..+.....+. +... ++
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~sl---E~~~~~l~~R~~~---~~~~-i~- 256 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSL---EMPAAQLTLRMMC---SEAR-ID- 256 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEES---SSCHHHHHHHHHH---HHTT-CC-
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEEC---CCCHHHHHHHHHH---HHcC-CC-
Confidence 3457776656999999999999999999999887763 111112 2332211 1222211100000 0000 00
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH--hCCCEEEEe
Q 020477 171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV--LGADLAILD 248 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~--~~p~lLlLD 248 (325)
. .......... +.+.++...+..+....-+.+.. + .+|..+. .+.+|.+. .+++++|+|
T Consensus 257 ------------~--~~l~~g~l~~-~~~~~~~~a~~~l~~~~l~i~d~-~-~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 257 ------------M--NRVRLGQLTD-RDFSRLVDVASRLSEAPIYIDDT-P-DLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp ------------T--TTCCGGGCCH-HHHHHHHHHHHHHHTSCEEEECC-T-TCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred ------------H--HHHhCCCCCH-HHHHHHHHHHHHHhcCCEEEECC-C-CCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 0 0000000111 22333333333332211122222 2 3777665 34556565 479999999
Q ss_pred CcCcCCCH----------HHHHHHHHHHHhccCC-CcEEEEEeC
Q 020477 249 EIDSGLDV----------DALRDVAKAVNGLLTP-KNSLLMITH 281 (325)
Q Consensus 249 EPtsgLD~----------~~~~~i~~~L~~l~~~-g~tvIivtH 281 (325)
..+.-.+. .....+...|+.++++ +.+||+++|
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 99875543 1234566777777655 889999998
No 214
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.70 E-value=1.9e-05 Score=68.48 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.2
Q ss_pred eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
+.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 44566777765 999999999999999998753
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.68 E-value=9.6e-05 Score=67.70 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=25.2
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+.++..+.|.||+|+|||||+++|++.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 4567888999999999999999999985
No 216
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.65 E-value=3.4e-05 Score=65.42 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=28.1
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC--CC----CCCccEEEECCEe
Q 020477 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP--DY----EVTEGSVVFKGEN 144 (325)
Q Consensus 93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~--~~----~p~~G~I~~~g~~ 144 (325)
.+++++++..++. .++|+|++|+|||||++.+.+-. .+ .++.+.+.++|..
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 4789999998887 67899999999999999998721 11 2335666666643
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.65 E-value=5e-06 Score=82.83 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=45.8
Q ss_pred EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE
Q 020477 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE 143 (325)
Q Consensus 80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~ 143 (325)
++++.+.|. ...++.++++++ +|+.++|+||||+|||||+++|++. ..+..|+|.+.|.
T Consensus 86 ~~~vk~~i~--~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 86 LEKVKERIL--EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS--LGRKFVRISLGGV 144 (543)
T ss_dssp CHHHHHHHH--HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH--HTCEEEEECCCC-
T ss_pred HHHHHHHHH--HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh--cCCCeEEEEeccc
Confidence 445555553 245678888888 8999999999999999999999997 4567788877763
No 218
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.65 E-value=0.00049 Score=64.78 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=28.4
Q ss_pred ccceeeeE--EEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 92 QEILKGVN--LLVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 92 ~~iL~~vs--l~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
...|+.+- =-+++|+++.|.|++|+|||||...++.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34565552 1388999999999999999999987775
No 219
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.63 E-value=1e-05 Score=69.27 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=39.2
Q ss_pred EEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC--C----CCCCccEEEECCEe
Q 020477 84 TAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP--D----YEVTEGSVVFKGEN 144 (325)
Q Consensus 84 s~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~--~----~~p~~G~I~~~g~~ 144 (325)
+++|++ -..+++++++..+++ .++|+|++|+|||||++.+.+-. . ..++.+.+.++|..
T Consensus 6 ~~~~~~-~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSG-FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHH-HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 345654 346899999988887 57899999999999999998721 0 12345677777643
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.62 E-value=7.6e-06 Score=70.96 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=33.7
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc--EEEECCE
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG--SVVFKGE 143 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G--~I~~~g~ 143 (325)
.+.+|.+++|+|++||||||+.+.|++. +.|..| .+.+++.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~--l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQ--LVRDRRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHH--HHHHHCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHH--hccccCCcEEEECCh
Confidence 4568999999999999999999999996 444667 7777753
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.62 E-value=2.4e-05 Score=65.80 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=29.9
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc--EEEECCEe
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG--SVVFKGEN 144 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G--~I~~~g~~ 144 (325)
.+|++++|+|++||||||+++.|++. +.+ .| .|.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~--l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY--LVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--Hhh-CCCcEEEECChH
Confidence 46899999999999999999999985 222 45 56666543
No 222
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.57 E-value=5.5e-05 Score=73.18 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=31.5
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCC----------CCCCccEEEECCEeC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPD----------YEVTEGSVVFKGENL 145 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~----------~~p~~G~I~~~g~~i 145 (325)
.++|+|+||+|||||++.|+|... ..+..|.+.++|+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999999621 125679999999865
No 223
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.56 E-value=3e-05 Score=65.71 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=25.8
Q ss_pred eeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
++|+...+|..++|+|++||||||+.+.|+.
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5788888999999999999999999999986
No 224
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.55 E-value=3e-05 Score=66.79 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=25.0
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
...+|.+++|+||+|||||||.+.|+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999999874
No 225
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.53 E-value=3.2e-05 Score=66.24 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+++|+|+|||||||+++.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999983
No 226
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.53 E-value=9.5e-05 Score=69.88 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=33.0
Q ss_pred EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHh
Q 020477 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV 126 (325)
Q Consensus 78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~ 126 (325)
..+..|+..- -..+++..+++.+| +.+|+|+|||||||++.+|.
T Consensus 3 M~l~~L~l~n----Fr~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNN----FKSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEE----ETTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEc----cccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3455555431 12457788888885 99999999999999999875
No 227
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.48 E-value=7.8e-06 Score=77.26 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=35.3
Q ss_pred CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+.+.|++..|++ +.++++++|+| +|+|++|+|||||++.|.|.
T Consensus 16 ~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 16 GYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp -----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred ceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 36888999888853 56889999987 99999999999999999885
No 228
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.48 E-value=5e-05 Score=63.36 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36788999999999999999999995
No 229
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.47 E-value=0.00014 Score=59.99 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|++|+|||||++.++|.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999995
No 230
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.42 E-value=9.4e-05 Score=61.86 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999983
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.40 E-value=1e-05 Score=74.48 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=45.4
Q ss_pred EEEEEEEECCCcccceee-eEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020477 80 VTGLTAVIAESKQEILKG-VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146 (325)
Q Consensus 80 ~~~ls~~y~~~~~~iL~~-vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~ 146 (325)
.+++...|++. . ++ ++|+.+ |++++++|+||+||||++..|++. +.+..|+|.+.+.+..
T Consensus 77 ~~~l~~~~~~~--~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 77 YDELSNLFGGD--K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHTTCS--C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCS
T ss_pred HHHHHHHhccc--c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence 45566666532 1 56 777766 999999999999999999999996 4456778888776653
No 232
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.40 E-value=3.7e-05 Score=65.00 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.0
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV 138 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I 138 (325)
..+|.+++|+|++||||||+.+.|+.. +.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~--l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL--LQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeE
Confidence 357899999999999999999999985 33334544
No 233
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.39 E-value=0.00027 Score=65.02 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=31.9
Q ss_pred hCCCEEEEeCcCcC-CCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020477 240 LGADLAILDEIDSG-LDVDALRDVAKAVNGLLTPKNSLLMITHY 282 (325)
Q Consensus 240 ~~p~lLlLDEPtsg-LD~~~~~~i~~~L~~l~~~g~tvIivtHd 282 (325)
.++++|++||+-.- -+....+.+...+..+...+..+|++++.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 56999999998652 34477888888888876666667777663
No 234
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.30 E-value=9e-05 Score=63.42 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999884
No 235
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.29 E-value=7e-05 Score=68.81 Aligned_cols=57 Identities=7% Similarity=0.018 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHHH--hCCCEEEEeCcCcCCCHHH-HHHHHHHHHhccCC-Cc--EEEEEeCChhHHh
Q 020477 224 FSGGERKRNEILQLAV--LGADLAILDEIDSGLDVDA-LRDVAKAVNGLLTP-KN--SLLMITHYRRLLE 287 (325)
Q Consensus 224 LSgGqrQRv~iAraL~--~~p~lLlLDEPtsgLD~~~-~~~i~~~L~~l~~~-g~--tvIivtHd~~~~~ 287 (325)
+|+|++ .+++++. ..|.++++ +.+|... +..+.+.+.++.+. +. .+.+++|+-+-+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 888886 5666676 67889998 7899876 66777778777653 43 5556666644333
No 236
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.27 E-value=0.00011 Score=61.71 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.3
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999985
No 237
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.24 E-value=2.7e-05 Score=73.22 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.6
Q ss_pred cceeeeEEEEeCCCE--EEEEcCCCccHHHHHHHHhCC
Q 020477 93 EILKGVNLLVNEGEV--HAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 93 ~iL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+++.+++.+++|++ ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 477888888999999 999999999999999999984
No 238
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.23 E-value=0.0006 Score=60.56 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHH---hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC---CcEEEEEeCChhH
Q 020477 227 GERKRNEILQLAV---LGADLAILDEIDSGLDVDALRDVAKAVNGLLTP---KNSLLMITHYRRL 285 (325)
Q Consensus 227 GqrQRv~iAraL~---~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~---g~tvIivtHd~~~ 285 (325)
|++.+-.+.+++. .+++++|+--+.+.++.. ...+++.+.++... +.++|+++|-.++
T Consensus 88 ~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 88 TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 3444555666653 788888777666666554 44555566554321 5689999995443
No 239
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.21 E-value=0.00016 Score=63.74 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=23.5
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
-.+|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999999986
No 240
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.21 E-value=0.00016 Score=69.07 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=32.3
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCC---------CCCCccEEEECC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPD---------YEVTEGSVVFKG 142 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~---------~~p~~G~I~~~g 142 (325)
.+..|..++|+|+||+|||||++.|+|... ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 446788899999999999999999999510 346778887765
No 241
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=3.1e-05 Score=72.10 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=34.1
Q ss_pred ccceeeeEEEEeCCCE--EEEEcCCCccHHHHHHHHhCC
Q 020477 92 QEILKGVNLLVNEGEV--HAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+++.++..++.|++ +.+.||+|+||||+++++++.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4688889999999998 999999999999999999995
No 242
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.13 E-value=0.00023 Score=59.73 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999995
No 243
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.12 E-value=0.00024 Score=58.60 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
No 244
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.12 E-value=0.00027 Score=58.89 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
|.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999974
No 245
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.09 E-value=0.00015 Score=64.48 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=22.9
Q ss_pred eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++++++.+..| +.|+||+|+|||||+++|++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 33444444555 889999999999999999985
No 246
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.07 E-value=0.00025 Score=60.01 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=28.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhCCCC-CCCCccEEEECCEe
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGEN 144 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl~~-~~p~~G~I~~~g~~ 144 (325)
.+++|+|++|||||||++.|.+... ....-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5899999999999999999988411 11124677776544
No 247
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.01 E-value=0.00021 Score=67.87 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=40.5
Q ss_pred CCCEEEEeCcCcCCC---HHHHHHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020477 241 GADLAILDEIDSGLD---VDALRDVAKAVNGLLTPKNSLLMITHYRRLLE 287 (325)
Q Consensus 241 ~p~lLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~ 287 (325)
.|.++++||.=.-++ +...+.+.+.+++.++.|..++++||++..+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 588999999988884 67888889999998888899999999987653
No 248
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.01 E-value=0.00037 Score=58.41 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHhC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
|.+++|.|++||||||+.+.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999986
No 249
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.96 E-value=0.00039 Score=57.07 Aligned_cols=19 Identities=53% Similarity=0.711 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 020477 107 VHAIMGKNGSGKSTLSKVL 125 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l 125 (325)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 250
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.95 E-value=0.0032 Score=59.41 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.1
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
-+++|+++.|.|+.|+|||||+..++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999977664
No 251
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.94 E-value=0.00033 Score=62.60 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+++|+||+|||||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999873
No 252
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.92 E-value=0.00036 Score=58.73 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.4
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
..+.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999976
No 253
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.91 E-value=0.00044 Score=61.28 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHhC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.-+++|.||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 254
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.91 E-value=0.00046 Score=59.69 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+-+++|+|++||||||+.+.|+.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc
Confidence 3568999999999999999999873
No 255
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.88 E-value=0.0005 Score=58.24 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+++|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999983
No 256
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.87 E-value=0.00047 Score=58.93 Aligned_cols=20 Identities=50% Similarity=0.634 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHhC
Q 020477 108 HAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 108 ~~lvG~NGsGKSTLl~~l~G 127 (325)
+.|+||||||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998864
No 257
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.85 E-value=0.00044 Score=57.62 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 258
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.85 E-value=0.0006 Score=57.12 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.+..+.|+|++||||||+.+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999975
No 259
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.83 E-value=0.00054 Score=57.29 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=22.2
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
..+.++.|+|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999999983
No 260
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.82 E-value=0.00037 Score=62.12 Aligned_cols=41 Identities=17% Similarity=0.412 Sum_probs=32.0
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i 145 (325)
....+.++.|+|++||||||+.+.|+.. +. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~--l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE--FQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH--TT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh--cC--CCcEEEecHHH
Confidence 4566789999999999999999999985 21 35677777544
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.82 E-value=0.00031 Score=60.27 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+++|.|++||||||+++.|+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 262
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.82 E-value=0.0013 Score=55.22 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=27.6
Q ss_pred EEEEEcCCCccHHHHHHHHhCC---CCCCCCcc----EEEECCEe
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH---PDYEVTEG----SVVFKGEN 144 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl---~~~~p~~G----~I~~~g~~ 144 (325)
.++|+|++|+|||||++.+.+- ..+.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 4889999999999999766552 12456666 66777754
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.81 E-value=0.00062 Score=56.47 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 264
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.79 E-value=0.00073 Score=57.38 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+|-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999974
No 265
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.77 E-value=0.00065 Score=57.61 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHhC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
..+++|+|++||||||+.+.|+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999997
No 266
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.73 E-value=0.00082 Score=57.45 Aligned_cols=25 Identities=44% Similarity=0.553 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.+|-+++|.|+.||||||+.+.|+-
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999975
No 267
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.73 E-value=0.00079 Score=57.37 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+|.+++|.|+.||||||+.+.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999873
No 268
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.72 E-value=0.0007 Score=60.82 Aligned_cols=40 Identities=8% Similarity=0.088 Sum_probs=28.8
Q ss_pred cCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhh
Q 020477 250 IDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFI 289 (325)
Q Consensus 250 PtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~ 289 (325)
|||+++..+...+.+.+.++..+ ..+..+.+|..+.+...
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~ 184 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIERE 184 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHH
Confidence 99999999999999888876533 34445566766655544
No 269
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.72 E-value=0.0012 Score=62.37 Aligned_cols=38 Identities=32% Similarity=0.315 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCCC---------CCCCCccEEEECC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGHP---------DYEVTEGSVVFKG 142 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl~---------~~~p~~G~I~~~g 142 (325)
|-.++|+|.+|+|||||++.|+|-. ...|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 4578999999999999999999831 1346778887765
No 270
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.70 E-value=0.00085 Score=56.53 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.5
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++.+++|+|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999999985
No 271
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.70 E-value=0.00065 Score=61.92 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g 142 (325)
.|.++.|.||+||||||+.+.|+.- + + .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~--~-~-~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE--T-Q-GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH--T-T-TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--h-C-CCeEEEec
Confidence 4678999999999999999999863 2 1 35566664
No 272
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.68 E-value=0.00086 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHhC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
+.+++|+|+.||||||+.+.|+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
No 273
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.67 E-value=0.00093 Score=57.15 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=23.1
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
..+|-+++|.|+.||||||+.+.|+-
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999999985
No 274
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.62 E-value=0.00095 Score=55.88 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
+++|.|+.||||||+.+.|+-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 275
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.62 E-value=0.0009 Score=56.92 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999883
No 276
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.60 E-value=0.0086 Score=66.52 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=25.7
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 3899999999999999999999988773
No 277
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.60 E-value=0.00097 Score=56.11 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.6
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+++|+|++|||||||+..|++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999988874
No 278
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.56 E-value=0.0012 Score=55.64 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
+++|.|+.||||||+.+.|.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 279
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.55 E-value=0.00087 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=17.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
++.++.|.|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
No 280
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.54 E-value=0.0008 Score=59.05 Aligned_cols=60 Identities=23% Similarity=0.216 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCcCc-CCCHHHHHHHHHHHHhccCCCcEEEEE-eCChhHH
Q 020477 225 SGGERKRNEILQLAVLGADLAILDEIDS-GLDVDALRDVAKAVNGLLTPKNSLLMI-THYRRLL 286 (325)
Q Consensus 225 SgGqrQRv~iAraL~~~p~lLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvIiv-tHd~~~~ 286 (325)
+.|...+... ..+.+-+++|+||.-. ++|.......++.+.....+-.+++++ |.+.+..
T Consensus 162 Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~ 223 (235)
T 3llm_A 162 TVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMF 223 (235)
T ss_dssp EHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHH
T ss_pred CHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHH
Confidence 5577666543 3578999999999976 687776644444444433333344444 4554443
No 281
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.51 E-value=0.013 Score=56.60 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=28.3
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.-|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34555544589999999999999999999877665
No 282
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0012 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999984
No 283
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.49 E-value=0.0014 Score=55.35 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.7
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
..+-+++|+|+.||||||+.+.|+.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999986
No 284
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.46 E-value=0.021 Score=55.06 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++.+++++|++|+||||++..|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4679999999999999999988874
No 285
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.46 E-value=0.0014 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999999984
No 286
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.45 E-value=0.0014 Score=54.73 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 287
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.44 E-value=0.0015 Score=56.06 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999965
No 288
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.44 E-value=0.0017 Score=56.08 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
+|-+++|+|+.||||||+.+.|+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 289
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.42 E-value=0.0016 Score=58.89 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|++|+|||||++.++|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999994
No 290
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.41 E-value=0.0018 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.|-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999984
No 291
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.40 E-value=0.0017 Score=56.57 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.4
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++-+++|+|+.||||||+.+.|+-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999985
No 292
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.40 E-value=0.0017 Score=54.40 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
+++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 293
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.40 E-value=0.0015 Score=52.85 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 294
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.0018 Score=52.51 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999883
No 295
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.38 E-value=0.0019 Score=52.54 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999874
No 296
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.36 E-value=0.0015 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
.+++|+|+.||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 297
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.36 E-value=0.0017 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++++|+.|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
No 298
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.35 E-value=0.0019 Score=53.00 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
+++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 299
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.35 E-value=0.0019 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
No 300
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.35 E-value=0.0019 Score=55.60 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 301
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.34 E-value=0.0016 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 302
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.34 E-value=0.0018 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 303
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.34 E-value=0.0021 Score=53.03 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.6
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
++++|+|+.||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999976
No 304
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.33 E-value=0.0025 Score=58.90 Aligned_cols=35 Identities=34% Similarity=0.347 Sum_probs=30.7
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
...+++..+.+ .|.-++|+|+||+|||||...|.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 35788888888 788999999999999999998887
No 305
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.33 E-value=0.0022 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHhC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
+-+++|+|+.||||||+.+.|+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 55899999999999999999976
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.33 E-value=0.0024 Score=52.43 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999883
No 307
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.32 E-value=0.0017 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
-+++|+|+.||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 308
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.31 E-value=0.0019 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999984
No 309
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.31 E-value=0.0019 Score=52.14 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999886
No 310
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.31 E-value=0.0019 Score=53.98 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHhC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
+.+++|+|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 311
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.30 E-value=0.0019 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999873
No 312
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.29 E-value=0.0015 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHhC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999885
No 313
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.28 E-value=0.002 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999884
No 314
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.28 E-value=0.0018 Score=56.11 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.+-++.|+|+.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999986
No 315
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.28 E-value=0.002 Score=52.40 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 316
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.28 E-value=0.0021 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHhC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
..+++|.|+.||||||+.+.|+-
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999985
No 317
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.28 E-value=0.0021 Score=56.99 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.3
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
-+++|.|+.||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999976
No 318
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.26 E-value=0.0022 Score=57.29 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
++.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466899999999999999999976
No 319
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.26 E-value=0.002 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998873
No 320
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.26 E-value=0.0022 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999984
No 321
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.26 E-value=0.0023 Score=54.81 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.3
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
-+++|+|..||||||+.+.|+-
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.26 E-value=0.0021 Score=52.00 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999987
No 323
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.25 E-value=0.0021 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 324
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.24 E-value=0.002 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 325
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.21 E-value=0.002 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.21 E-value=0.0022 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999873
No 327
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.20 E-value=0.0029 Score=54.56 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+..+.|.||+|+|||||++.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999873
No 328
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.14 E-value=0.0026 Score=51.52 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 329
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.14 E-value=0.0025 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999873
No 330
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.13 E-value=0.0025 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999984
No 331
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.13 E-value=0.0026 Score=51.70 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 332
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.13 E-value=0.0025 Score=54.00 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999863
No 333
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.12 E-value=0.0026 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999883
No 334
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.12 E-value=0.003 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999873
No 335
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.12 E-value=0.0013 Score=60.08 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=18.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
++-+++|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 336
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.11 E-value=0.0027 Score=52.67 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999873
No 337
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.11 E-value=0.0029 Score=57.97 Aligned_cols=22 Identities=50% Similarity=0.604 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|.+|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999994
No 338
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.09 E-value=0.0027 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.|.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999985
No 339
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.09 E-value=0.0026 Score=57.13 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|.+|+|||||++.|.|-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999884
No 340
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.09 E-value=0.0028 Score=51.19 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
No 341
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.08 E-value=0.0031 Score=54.86 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
+++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 342
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.06 E-value=0.0028 Score=57.39 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.-+++|+|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 343
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.06 E-value=0.003 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 344
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.05 E-value=0.096 Score=58.31 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=27.6
Q ss_pred cceeeeEE--EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 93 EILKGVNL--LVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 93 ~iL~~vsl--~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.-|+.+-= -+++|.++.|.||.|+|||||+..++.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 34555421 388999999999999999999877665
No 345
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.05 E-value=0.003 Score=52.66 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999873
No 346
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.05 E-value=0.0028 Score=51.89 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999986
No 347
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.05 E-value=0.0032 Score=55.69 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
++-+++|+|+.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 348
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.05 E-value=0.003 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999873
No 349
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.04 E-value=0.0018 Score=58.64 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.5
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+.|.||+|+|||||+++|++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 57999999999999999999995
No 350
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.04 E-value=0.0031 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 351
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.04 E-value=0.0031 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|..|+|||||++.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999994
No 352
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.03 E-value=0.016 Score=56.60 Aligned_cols=68 Identities=19% Similarity=0.158 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHHHH--HHh---------------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020477 223 GFSGGERKRNEILQL--AVL---------------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL 285 (325)
Q Consensus 223 ~LSgGqrQRv~iAra--L~~---------------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~ 285 (325)
.+||||+|-.-+|.+ +++ .=.+++|||+ +-+|.+..+..+++++++ |.-+|++|=+ .
T Consensus 379 ~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~--~ 452 (483)
T 3euj_A 379 ALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE--N 452 (483)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS--S
T ss_pred CCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc--h
Confidence 499999996544433 322 1247999999 999999999999999987 6678889986 3
Q ss_pred HhhhCCcEEEEE
Q 020477 286 LEFIKPTFIHIM 297 (325)
Q Consensus 286 ~~~~~~d~i~vl 297 (325)
+... .|.++.+
T Consensus 453 i~p~-v~~~~~~ 463 (483)
T 3euj_A 453 ISPE-RGTTYKL 463 (483)
T ss_dssp CCCS-SSEEEEC
T ss_pred hhhc-cCceEEE
Confidence 3333 3555544
No 353
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.01 E-value=0.0021 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-.++|+|+.|+|||||++.|.|-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 354
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.00 E-value=0.0037 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+.=.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999999874
No 355
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.99 E-value=0.0036 Score=57.45 Aligned_cols=22 Identities=50% Similarity=0.611 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+++|+|..|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999994
No 356
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.97 E-value=0.0033 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 357
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.97 E-value=0.0035 Score=55.56 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.|.|-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 358
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.96 E-value=0.0034 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 359
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.95 E-value=0.0032 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999873
No 360
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.94 E-value=0.0044 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+.|.||+|+|||||++.|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999874
No 361
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.94 E-value=0.0029 Score=59.77 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|++|+|||||++.|+|.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999984
No 362
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.94 E-value=0.0035 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 363
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.94 E-value=0.0036 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999873
No 364
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.92 E-value=0.0038 Score=53.74 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 365
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.91 E-value=0.0037 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999873
No 366
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.91 E-value=0.0034 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 367
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.91 E-value=0.0037 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999883
No 368
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.91 E-value=0.0047 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+..+.|.||.|+|||||++.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999873
No 369
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.90 E-value=0.0034 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999884
No 370
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.90 E-value=0.0041 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999883
No 371
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.90 E-value=0.0038 Score=52.08 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 372
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.0036 Score=52.37 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 589999999999999999987
No 373
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.87 E-value=0.0047 Score=52.09 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999884
No 374
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.87 E-value=0.004 Score=52.57 Aligned_cols=21 Identities=38% Similarity=0.757 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|.+|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 375
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.86 E-value=0.0042 Score=58.00 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.8
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+++|+||+|||||||.+.|+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 37999999999999999999874
No 376
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.85 E-value=0.0045 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999984
No 377
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.85 E-value=0.0041 Score=51.23 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999886
No 378
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.85 E-value=0.0045 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|..|+|||||++.|+|-
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999994
No 379
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.84 E-value=0.0046 Score=53.55 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999983
No 380
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.84 E-value=0.0038 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 381
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.84 E-value=0.0046 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHhC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
|-.+.|+|+.||||||+.+.|+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999999976
No 382
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.0046 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
=.++|+|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999996
No 383
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.82 E-value=0.0044 Score=56.04 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 384
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.82 E-value=0.0043 Score=55.87 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|..|+|||||++.|+|-
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999994
No 385
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.82 E-value=0.0039 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999999984
No 386
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.82 E-value=0.0046 Score=52.31 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999873
No 387
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.81 E-value=0.0041 Score=51.28 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.80 E-value=0.004 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.4
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-.++|+|+.|+|||||++.|++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999998873
No 389
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.79 E-value=0.0044 Score=51.67 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999986
No 390
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.79 E-value=0.0043 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999983
No 391
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.78 E-value=0.0045 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 392
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0042 Score=52.00 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999999883
No 393
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.77 E-value=0.005 Score=58.99 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.2
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
-....++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999876
No 394
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.76 E-value=0.004 Score=54.76 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=20.7
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+|-++.|.|+.||||||+++.|.-.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999998763
No 395
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.75 E-value=0.0048 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=20.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
=.++|+|+.|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999987
No 396
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.75 E-value=0.0047 Score=51.71 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999884
No 397
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.75 E-value=0.0047 Score=56.22 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|..|||||||++.|+|.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 5899999999999999999995
No 398
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.0043 Score=52.89 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999998876
No 399
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.74 E-value=0.007 Score=52.25 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=28.7
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
...++..-+.+ .|..+.|+||+|+|||||...|+.
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567666665 578899999999999999999886
No 400
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.73 E-value=0.0056 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.389 Sum_probs=22.7
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-+|-+++|.|+.||||||+++.|.-.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999999998763
No 401
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.72 E-value=0.005 Score=51.46 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999987
No 402
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.71 E-value=0.0058 Score=54.07 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+|.+++|.|++||||||+++.|...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999998763
No 403
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.70 E-value=0.0056 Score=51.56 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|..|+|||||++.+.+-
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999999883
No 404
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0051 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 405
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.70 E-value=0.0047 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.70 E-value=0.0063 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.+-.+.|+|+.||||||+.+.|+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999986
No 407
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.69 E-value=0.0061 Score=51.26 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 408
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.68 E-value=0.006 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
No 409
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.68 E-value=0.0056 Score=57.06 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++.++.|+||+|||||||...|+--
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999984
No 410
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.68 E-value=0.0053 Score=51.80 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 411
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.67 E-value=0.0041 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999873
No 412
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0053 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 413
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.66 E-value=0.0054 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999873
No 414
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.65 E-value=0.0058 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 415
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.64 E-value=0.006 Score=56.32 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+.+++|+||+|||||||...|+--
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999999999873
No 416
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.61 E-value=0.0059 Score=54.42 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|..|+|||||++.|.|-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
No 417
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.60 E-value=0.0057 Score=52.53 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999873
No 418
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.0053 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999883
No 419
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.60 E-value=0.0039 Score=53.28 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
No 420
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.60 E-value=0.06 Score=60.76 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=24.1
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
+++|.++.|.||.|+|||||+..++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877765
No 421
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.59 E-value=0.0054 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999884
No 422
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.59 E-value=0.0069 Score=52.67 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+|.++.+-|+.||||||+++.|.-.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999998874
No 423
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.58 E-value=0.0063 Score=56.40 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+++|+||+|||||||.+.|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999974
No 424
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.58 E-value=0.0059 Score=54.95 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|..|+|||||++.|.|.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHHCC
Confidence 6899999999999999999995
No 425
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.58 E-value=0.0062 Score=54.48 Aligned_cols=22 Identities=36% Similarity=0.663 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++++|+.|+|||||++.|.|-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999984
No 426
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.57 E-value=0.006 Score=51.01 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 589999999999999988876
No 427
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.57 E-value=0.0068 Score=58.93 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=30.4
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+++.+ +.+-+|+..+|+|++|+|||||++.|++.
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 3456666 67789999999999999999999998873
No 428
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.57 E-value=0.006 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
No 429
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.57 E-value=0.0062 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=20.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
=.++|+|+.|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 430
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.56 E-value=0.006 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+..+.|.||.|+|||||++.++..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3556789999999999999999874
No 431
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.55 E-value=0.0043 Score=51.25 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=9.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998873
No 432
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.55 E-value=0.0071 Score=55.55 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=24.6
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
-+++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987774
No 433
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.53 E-value=0.0079 Score=51.28 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=32.8
Q ss_pred hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020477 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR 284 (325)
Q Consensus 240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~ 284 (325)
.+|.+|++||.-. +|......+.+.+.+. ..+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7888888888888654 23567888888754
No 434
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0077 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 435
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.48 E-value=0.0062 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999987
No 436
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.48 E-value=0.0073 Score=54.02 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+.-+.|.||+|+|||||++.++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667999999999999999999984
No 437
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.47 E-value=0.0071 Score=53.03 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
|-+++|.|..||||||+++.|+-.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 438
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.45 E-value=0.0059 Score=54.33 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.0
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++-+++|.|+.||||||+++.|+-.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999999874
No 439
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.45 E-value=0.0073 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.5
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-.++++|.+|+|||||++.|.|-
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 57899999999999999999995
No 440
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.43 E-value=0.0082 Score=52.36 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+|.++.+-|+.||||||+++.|.-.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999884
No 441
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.41 E-value=0.0084 Score=52.58 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.2
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+|-++++.|+.||||||+.+.|...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999998763
No 442
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.007 Score=50.58 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 443
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.36 E-value=0.0072 Score=51.96 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|..|+|||||++-+++
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999988876
No 444
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.35 E-value=0.0063 Score=50.65 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999976
No 445
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.34 E-value=0.0068 Score=58.63 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|.+|+|||||++.|+|
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 799999999999999999998
No 446
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.29 E-value=0.0022 Score=59.04 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=33.0
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020477 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR 284 (325)
Q Consensus 241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~ 284 (325)
++.++++|| ...|+......+.+.+.+... ...+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999999999999988643 345677777654
No 447
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.28 E-value=0.012 Score=51.04 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=37.6
Q ss_pred HHhCCCEEEEeCcCcC----CCHHHHHHHHHHHHhccCC-CcEEEEEeCChhH----------HhhhCCcEEEEEe
Q 020477 238 AVLGADLAILDEIDSG----LDVDALRDVAKAVNGLLTP-KNSLLMITHYRRL----------LEFIKPTFIHIME 298 (325)
Q Consensus 238 L~~~p~lLlLDEPtsg----LD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~----------~~~~~~d~i~vl~ 298 (325)
--.+++++++|--+.- -|.....++...|+.++++ +.++++++|-.+. .... +|-|+.|+
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~-aD~vi~l~ 206 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFI-ARGVIVLD 206 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGG-CSEEEEEE
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEE-eeEEEEEE
Confidence 3458999999964421 1444555666777776654 8899999885321 2233 68777764
No 448
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.24 E-value=0.015 Score=49.06 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=26.8
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
+..++..-+.+ .|.-+.|.|+||+|||||...+..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34556555555 577899999999999999987754
No 449
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.21 E-value=0.01 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+++|+||+|||||||...|+-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 357899999999999999999873
No 450
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.21 E-value=0.01 Score=51.87 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.8
Q ss_pred EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 102 VNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 102 i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
+.+..++.|+||.||||+|..+.|+-
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999986
No 451
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.19 E-value=0.0087 Score=50.68 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999873
No 452
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.18 E-value=0.0043 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=4.2
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998873
No 453
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.17 E-value=0.009 Score=50.72 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 588999999999999988875
No 454
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.0099 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 455
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.14 E-value=0.011 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..-+.|.||.|+|||||++.++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 445889999999999999999873
No 456
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.08 E-value=0.011 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999998873
No 457
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.06 E-value=0.003 Score=65.65 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=33.7
Q ss_pred eEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020477 98 VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145 (325)
Q Consensus 98 vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i 145 (325)
.++.+.+|+.+.|+||+|+|||||+++|++.. ..+-+.+++.++
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~~l 547 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPEL 547 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----TCCCCCCCCSSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----CCCEEEEechHh
Confidence 36677899999999999999999999999852 123455555444
No 458
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.03 E-value=0.012 Score=47.49 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=28.0
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020477 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281 (325)
Q Consensus 241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtH 281 (325)
+..+|++||. ..|++..+..+++.|.... ....+|.+|+
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~-~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEH-RPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSS-CSSCEEEEES
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcC-CCEEEEEECC
Confidence 3467999998 4688888888888885433 3345666666
No 459
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.96 E-value=0.011 Score=50.13 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999886
No 460
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.90 E-value=0.016 Score=49.04 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=26.2
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020477 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR 284 (325)
Q Consensus 241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~ 284 (325)
+++++++||.=- +++. +.+.|+.+.+.+..||+..++.+
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccc
Confidence 578999999743 6544 34445545445788888888544
No 461
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.89 E-value=0.013 Score=54.83 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHH---Hh--CCCEEEEeCcC
Q 020477 223 GFSGGERKRNEILQLA---VL--GADLAILDEID 251 (325)
Q Consensus 223 ~LSgGqrQRv~iAraL---~~--~p~lLlLDEPt 251 (325)
.+|+||+||.+|+++| +. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 76 89999999997
No 462
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.87 E-value=0.015 Score=50.21 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
++.|+||.||||+|..+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999986
No 463
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.80 E-value=0.15 Score=57.71 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=30.8
Q ss_pred ccceeeeE--EEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 92 QEILKGVN--LLVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 92 ~~iL~~vs--l~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
.+.|+++. .-+++|+.+.|.|+.|+|||||...+.-
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45677776 5799999999999999999999988763
No 464
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.73 E-value=0.017 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
|.+++|=|.-||||||+++.|.-.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 568999999999999999999874
No 465
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.69 E-value=0.015 Score=55.44 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=19.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
.+++|+||+|||||||.+.|+-
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4789999999999999999886
No 466
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.69 E-value=0.016 Score=48.70 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=30.8
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020477 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR 284 (325)
Q Consensus 241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~ 284 (325)
++.+|++||. ..++......+.+.+.+.. .+..+|++|+...
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChh
Confidence 6789999995 5578888888888887643 3456777777653
No 467
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.55 E-value=0.0046 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999884
No 468
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.54 E-value=0.013 Score=50.09 Aligned_cols=40 Identities=5% Similarity=-0.114 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCEEEEeCcCc-----CCCHHHHHHHHHHHHhcc
Q 020477 231 RNEILQLAVLGADLAILDEIDS-----GLDVDALRDVAKAVNGLL 270 (325)
Q Consensus 231 Rv~iAraL~~~p~lLlLDEPts-----gLD~~~~~~i~~~L~~l~ 270 (325)
.-.|++.+..+|.+.+.++|+. .+|+...+.+...+++.+
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQ 210 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhh
Confidence 4477888899999988888876 788888888888777643
No 469
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.51 E-value=0.016 Score=55.67 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|+.|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999993
No 470
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.51 E-value=0.014 Score=53.93 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=22.7
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
..+..+.|.||.|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34667999999999999999999873
No 471
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.50 E-value=0.019 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=21.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-.++++|.+|+|||||++.|.|-
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred ceEEEEecCCCchHHHHHHHhcC
Confidence 46899999999999999999995
No 472
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.49 E-value=0.015 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|..|+|||||++.|.|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 473
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.48 E-value=0.021 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+..+.|.||.|+|||||++.++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3556899999999999999988874
No 474
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.47 E-value=0.019 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++|+|..++|||||++.|+|-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999984
No 475
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.43 E-value=0.008 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.656 Sum_probs=21.1
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
....| +.|.||+|+|||||++.|+.
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHH
Confidence 33445 77999999999999999987
No 476
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.45 E-value=0.007 Score=51.15 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~G 127 (325)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988876
No 477
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.35 E-value=0.019 Score=53.58 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.-+++|+|+.|+|||||++.|++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998863
No 478
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.26 E-value=0.021 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998763
No 479
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.24 E-value=0.025 Score=49.74 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.7
Q ss_pred CEEEEEcCCCccHHHHHHHHhC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~G 127 (325)
-.+||+|+.||||||+.+.|+-
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 3589999999999999999865
No 480
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.23 E-value=0.02 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++..++++|.+|+|||||++.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999983
No 481
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.18 E-value=0.024 Score=50.45 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
....+.|.||.|+|||||++.++.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 344688999999999999999987
No 482
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.15 E-value=0.03 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+.-+.|.||.|+|||+|+++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999873
No 483
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.13 E-value=0.015 Score=56.07 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.5
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+++|+|++|+||||++..|++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999985
No 484
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.10 E-value=0.031 Score=52.07 Aligned_cols=32 Identities=25% Similarity=0.174 Sum_probs=25.4
Q ss_pred eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.+.++++---.++|+|..+||||||++.|++-
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 44555554446899999999999999999873
No 485
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.10 E-value=0.023 Score=56.36 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=21.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-.++|+|..|+|||||++.|.|-
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999995
No 486
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.08 E-value=0.016 Score=46.52 Aligned_cols=40 Identities=3% Similarity=0.016 Sum_probs=28.7
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020477 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281 (325)
Q Consensus 241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtH 281 (325)
+..+|++||.- .|+...+..+++.+.+....+..+|.+|+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 34678999964 67888888888888775433456666665
No 487
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.99 E-value=0.021 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
++..++++|.+|+|||||++.|.|-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5678999999999999999999984
No 488
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.99 E-value=0.031 Score=51.75 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=24.3
Q ss_pred EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020477 101 LVNEGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
-+.+|.++.|.||.|+|||||...++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 578888999999999999999998874
No 489
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.99 E-value=0.027 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+..+.|.||.|+|||||++.++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999874
No 490
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.039 Score=52.13 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=29.5
Q ss_pred EEEEEcCCCccHHHHHHHHhCCCC---------CCCCccEEEECCEe
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGHPD---------YEVTEGSVVFKGEN 144 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl~~---------~~p~~G~I~~~g~~ 144 (325)
.+||+|..-+|||||++.|+|-.. ..|..|.+.+.|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 589999999999999999999410 12455788887754
No 491
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.92 E-value=0.028 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+..+.|.||+|+||||+.+.|+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999985
No 492
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.92 E-value=0.029 Score=56.49 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVG 127 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~G 127 (325)
+|.++.|+|.+||||||+.+.|+-
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 493
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.86 E-value=0.032 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+|..+.|.||.|+|||||++.++..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999974
No 494
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.85 E-value=0.028 Score=56.05 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.|-++.|.|.+||||||+.+.|.-.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999863
No 495
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.83 E-value=0.033 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHhCC
Q 020477 105 GEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 105 Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+..+.|.||.|+|||||++.++..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 557999999999999999999873
No 496
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.82 E-value=0.036 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 104 EGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+..-+.|.||.|+|||||++.++..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3456889999999999999999974
No 497
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=93.80 E-value=0.033 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhCC
Q 020477 107 VHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 107 ~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
.++++|..|+|||||++.|+|.
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999994
No 498
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.76 E-value=0.026 Score=55.45 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020477 103 NEGEVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
+.|-++.|+|.+||||||+.+.|+..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHH
Confidence 56778999999999999999999884
No 499
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.76 E-value=0.029 Score=56.15 Aligned_cols=23 Identities=43% Similarity=0.497 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHhCC
Q 020477 106 EVHAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 106 e~~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-+++|+|+.|+|||||++.|.|-
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHhHcCC
Confidence 56899999999999999999995
No 500
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.75 E-value=0.018 Score=55.60 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=23.6
Q ss_pred EEEeCCCE--EEEEcCCCccHHHHHHHHhCC
Q 020477 100 LLVNEGEV--HAIMGKNGSGKSTLSKVLVGH 128 (325)
Q Consensus 100 l~i~~Ge~--~~lvG~NGsGKSTLl~~l~Gl 128 (325)
-.+..|.+ +.|.||+|+|||||+++|+..
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 33444554 889999999999999999985
Done!