Query 020478
Match_columns 325
No_of_seqs 189 out of 324
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3117 Protein involved in rR 100.0 6.1E-52 1.3E-56 388.0 21.7 279 12-300 4-311 (340)
2 PF04000 Sas10_Utp3: Sas10/Utp 99.8 6.8E-18 1.5E-22 132.0 10.1 82 25-106 1-85 (85)
3 KOG3118 Disrupter of silencing 98.2 4.1E-06 9E-11 84.6 7.5 112 11-122 222-338 (517)
4 KOG4835 DNA-binding protein C1 98.1 2.4E-05 5.1E-10 68.1 10.0 54 62-115 48-101 (144)
5 PF10303 DUF2408: Protein of u 60.0 40 0.00087 29.1 7.0 41 67-107 81-124 (134)
6 KOG3118 Disrupter of silencing 59.8 11 0.00025 39.1 4.1 84 10-106 202-292 (517)
7 PHA03225 DNA packaging protein 57.9 20 0.00043 30.9 4.6 46 61-107 62-113 (125)
8 PF10018 Med4: Vitamin-D-recep 53.5 44 0.00096 30.1 6.5 70 10-80 29-98 (188)
9 PF04108 APG17: Autophagy prot 49.8 57 0.0012 33.1 7.3 114 9-122 240-380 (412)
10 PF03581 Herpes_UL33: Herpesvi 44.7 50 0.0011 26.1 4.7 41 68-108 25-67 (75)
11 COG4477 EzrA Negative regulato 39.6 3E+02 0.0065 29.4 10.7 73 53-130 161-241 (570)
12 PF15467 SGIII: Secretogranin- 33.8 61 0.0013 32.8 4.4 45 18-62 266-319 (453)
13 PF12432 DUF3677: Protein of u 30.9 43 0.00092 26.6 2.4 42 63-104 26-67 (83)
14 PF15003 HAUS2: HAUS augmin-li 24.6 5.2E+02 0.011 25.3 8.9 28 56-83 83-110 (277)
15 PF07030 DUF1320: Protein of u 22.2 2.2E+02 0.0047 24.0 5.3 45 62-107 57-101 (130)
16 PHA03236 DNA packaging protein 20.2 1.9E+02 0.0042 25.0 4.5 16 68-83 64-79 (127)
No 1
>KOG3117 consensus Protein involved in rRNA processing [RNA processing and modification]
Probab=100.00 E-value=6.1e-52 Score=388.05 Aligned_cols=279 Identities=30% Similarity=0.429 Sum_probs=215.8
Q ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 020478 12 DERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGH 91 (325)
Q Consensus 12 ~~~l~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK~~g~si~~h 91 (325)
+..+..++|.|..|+..+..++..+...++.|++.+..+..++.+|+|||++||++||+|++.|+|+|+-|+.|.++..|
T Consensus 4 l~~l~a~~es~~~L~~~l~~q~~~~~k~~~~l~e~l~~ta~~~e~gvSlLsLKnqlll~Yl~~Lt~Lil~klddes~~~h 83 (340)
T KOG3117|consen 4 LKSLTATSESLERLSGILSNQMDVLNKSIQTLLEALPKTASSSEDGVSLLSLKNQLLLSYLQKLTFLILVKLDDESFLQH 83 (340)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccCceeeeechHHHHHHHHHHHHHHHHHhcccccccc
Confidence 45788999999999999999999999999999999988777889999999999999999999999999999999999999
Q ss_pred -hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHhhhhhcCCCcCCCC---CCCCCCCCCCCccchhccCCCCCccccc----
Q 020478 92 -PVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVN---PSANESGEPQKTEDLLKYRPNPDMLVSK---- 163 (325)
Q Consensus 92 -Pvv~rLve~R~~LeKirpLe~kL~yQIdKLl~~~a~~~~~~~~~---~~~~~~~~~~~~~D~L~~rPnp~~l~~~---- 163 (325)
|+|.|||++|++||||+|||+||+||||||+ +++++++.... ...++........-.+.|+||.+.+...
T Consensus 84 ~daveRlvqhRvvlEKirPLE~KlkyQiDKLl--raav~~es~~sn~e~r~n~~~~l~n~s~~~~~~~~~s~~~~~sd~p 161 (340)
T KOG3117|consen 84 QDAVERLVQHRVVLEKIRPLENKLKYQIDKLL--RAAVRKESIGSNKEPRNNGNDKLSNMSLKLHYKPNLSEFADDSDGP 161 (340)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHhhhcccccccccccCCCCcccccccccccCcccccccccccCc
Confidence 9999999999999999999999999999999 66654443211 1111111111111234455555544332
Q ss_pred --------CCCCC------------CCCCccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcC
Q 020478 164 --------TDMTT------------EDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEG 223 (325)
Q Consensus 164 --------~~~~~------------~~~~gvYrPPKia~~~~~~~~~~~~er~~~r~~k~~~rra~~S~~~~el~~e~sd 223 (325)
.++.+ ...+|+|+||||.||.|++. +..+.++. ..++ ..|++++|++|+||..+|||
T Consensus 162 eeee~edde~~ksa~~~e~~~ee~~~~e~gkYvpPRI~aV~~d~~-te~er~nk-~~E~-akrsamSssvi~elk~q~SD 238 (340)
T KOG3117|consen 162 EEEENEDDEDDKSAISSEDEEEELRSAEDGKYVPPRIRAVTYDEK-TERERPNK-LVEE-AKRSAMSSSVIQELKSQYSD 238 (340)
T ss_pred ccccccccccccccccchhhhhhhcccccCcccCCceeeecCchh-hhhcchhH-HHHH-HHHHhhhHHHHHHHHHhccc
Confidence 21110 12369999999999999942 22222222 2222 34789999999999999999
Q ss_pred CCchhhhcccchhHHhhHHHHHHHHHHHHhhhcccccC-CChHHHHHhhhhhhhhccccCccccccccccCCCCCccc
Q 020478 224 RPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAP-LTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKD 300 (325)
Q Consensus 224 ~PeE~~~~~g~~~~~~~r~~~~~~Er~~yEE~nftRLp-~sKkekkr~K~~~~~~~~~~g~~~~~f~d~~~l~~~~~~ 300 (325)
+|+|+.... +...-|+.++++++..|||+|||||| ++|++|+++||.+++ .-.+.+|+||+|+++|+.|...
T Consensus 239 apeeir~~~---~~k~~R~~qk~rrri~yEEsnftRL~~lsK~ekrksKr~~r~--~~~~~~~s~~eDfsals~g~~~ 311 (340)
T KOG3117|consen 239 APEEIRGRV---IHKDERELQKMRRRIEYEESNFTRLPKLSKKEKRKSKRVKRH--DYGGEDLSLDEDFSALSLGLTR 311 (340)
T ss_pred cchhhhhcc---cchhHHHHHHHHHhhhhhhhhhhhhhhccHHHHHHHHHhhhh--hccccccccccchhhhcccccc
Confidence 999876332 33345667778888999999999999 799999999997654 4556788899999999886654
No 2
>PF04000 Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR007146 This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex []. It also includes the Homo sapiens (Human) C1D protein and Saccharomyces cerevisiae (Baker's yeast) YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs [] and Sas10 which has been identified as a regulator of chromatin silencing []. This entry also includes the human protein Neuroguidin, an initiation factor 4E (eIF4E)-binding protein [].
Probab=99.75 E-value=6.8e-18 Score=132.03 Aligned_cols=82 Identities=43% Similarity=0.733 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 020478 25 LLREMKEGLDKLRSKVQSLITKVK---GNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIR 101 (325)
Q Consensus 25 LLkel~~~l~~v~~~v~~L~~~vk---~~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~rLve~R 101 (325)
||++|.+++.++.+.+++++..++ .+..++.+|++|+.+|++++++||+|++||+++|++|.++.+|||+++|+++|
T Consensus 1 ll~~l~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~g~sl~~~K~~~llaY~~~~~~~~~lk~~g~~~~~hpv~~~L~r~r 80 (85)
T PF04000_consen 1 LLKELSESLDEVEESLQPLLEKVKEEKEEELSPSDGISLLQAKNQLLLAYIINLLFYMYLKLSGVDPKDHPVMKELVRIR 80 (85)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 588999999999999999998884 56678999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 020478 102 LFLEK 106 (325)
Q Consensus 102 ~~LeK 106 (325)
++|+|
T Consensus 81 ~~leK 85 (85)
T PF04000_consen 81 QYLEK 85 (85)
T ss_pred HHHcC
Confidence 99986
No 3
>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=98.17 E-value=4.1e-06 Score=84.60 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=103.1
Q ss_pred hHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCccHHHHHHH---HHHHHHHHHHHHHHHHhcC
Q 020478 11 SDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGN--NYPTVDGISYLEAKHL---LLLNYCQSIVYYLLRKAKG 85 (325)
Q Consensus 11 ~~~~l~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~--~~~~~~GislL~~K~~---lLLsY~~nL~~ylllK~~g 85 (325)
++..++.+.|+.+.++..++..|.++...++|+++++... .+|+..+-+||..++. +++.||.+++||+++.+..
T Consensus 222 ~~~~~~~~~~e~~~~~~~~k~~l~el~s~l~t~~~~l~~~~~~L~~gee~~~lr~hp~m~~l~~~ke~w~s~~~l~s~~~ 301 (517)
T KOG3118|consen 222 QMLVLYSSEPEIVELLEPLKDLLEELESKLNTYMSYLKELDEELPPGEEESLLRSHPNMAVLKVVKEDWLSFPLLDSVDR 301 (517)
T ss_pred hhhhhhcccHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhcCcchhhhhhhhhhhhhhcccccccc
Confidence 4456788999999999999999999999999999999876 6788899999999888 9999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhHHHhhHHHHHHHh
Q 020478 86 LSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLT 122 (325)
Q Consensus 86 ~si~~hPvv~rLve~R~~LeKirpLe~kL~yQIdKLl 122 (325)
.+-..|||..+||-++.++.++...+.+.+..++++.
T Consensus 302 vts~~~~v~~~i~~~~k~~~kldn~~~e~~e~g~k~k 338 (517)
T KOG3118|consen 302 VTSDEAKVEVRIVLAEKQPMKLDNAREEKKEKGDKLK 338 (517)
T ss_pred ccccccccchhhHhhhhhhhhhhhHHHHHHHhhhHHh
Confidence 9988999999999999999999999998888888877
No 4
>KOG4835 consensus DNA-binding protein C1D involved in regulation of double-strand break repair [Replication, recombination and repair]
Probab=98.11 E-value=2.4e-05 Score=68.13 Aligned_cols=54 Identities=30% Similarity=0.599 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHhhHHHhhH
Q 020478 62 EAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQ 115 (325)
Q Consensus 62 ~~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~rLve~R~~LeKirpLe~kL~ 115 (325)
.+|-.+++.|+++.+||+.+++.|....+|||+..|-+.|++++|++.++.+++
T Consensus 48 qAKld~~~~ya~~sl~~~~l~~kG~da~dh~V~~EL~Rvk~y~~k~Kqi~d~~~ 101 (144)
T KOG4835|consen 48 QAKLDLTLAYAINSLFWSFLKLKGVDASDHPVLQELERVKVYMAKIKQINDRVK 101 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 589999999999999999999999999999999999999999999999888765
No 5
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=60.02 E-value=40 Score=29.12 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhcC---CCCCCChHHHHHHHHHHHHHHH
Q 020478 67 LLLNYCQSIVYYLLRKAKG---LSIEGHPVVQSLVEIRLFLEKI 107 (325)
Q Consensus 67 lLLsY~~nL~~ylllK~~g---~si~~hPvv~rLve~R~~LeKi 107 (325)
-||.=|.+|+.-+..+..+ .+-.-.|+-++|+.+|.-||++
T Consensus 81 ~LLd~C~~li~dl~~~~~~~~~~~~~l~~iY~~L~~ik~~LE~L 124 (134)
T PF10303_consen 81 GLLDDCFDLIEDLLERKGEEIEVDPSLQPIYDQLIDIKNTLENL 124 (134)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 6888899999888887773 2333469999999999998885
No 6
>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=59.76 E-value=11 Score=39.07 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=45.4
Q ss_pred hhHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH----h--
Q 020478 10 ISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRK----A-- 83 (325)
Q Consensus 10 ~~~~~l~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK----~-- 83 (325)
++..++..-.|+|..|.++++.-+-. ...+....-+.++.++-+-|-+|++.++.|+-.- -
T Consensus 202 ~~d~~le~i~kdla~ls~e~~~~~~~-------------~~~~e~~~~~~~~k~~l~el~s~l~t~~~~l~~~~~~L~~g 268 (517)
T KOG3118|consen 202 DKDTHLEEIVKDLASLSKEEQMLVLY-------------SSEPEIVELLEPLKDLLEELESKLNTYMSYLKELDEELPPG 268 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhh-------------cccHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 45555666666666666655442111 1111122334555555566666665555443221 1
Q ss_pred -cCCCCCCChHHHHHHHHHHHHHH
Q 020478 84 -KGLSIEGHPVVQSLVEIRLFLEK 106 (325)
Q Consensus 84 -~g~si~~hPvv~rLve~R~~LeK 106 (325)
.-.++.+||++.-|+..+..|..
T Consensus 269 ee~~~lr~hp~m~~l~~~ke~w~s 292 (517)
T KOG3118|consen 269 EEESLLRSHPNMAVLKVVKEDWLS 292 (517)
T ss_pred cchhhhhcCcchhhhhhhhhhhhh
Confidence 12257899999999987777665
No 7
>PHA03225 DNA packaging protein UL33; Provisional
Probab=57.91 E-value=20 Score=30.91 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCh--HHHHHHHHHHHHHHH
Q 020478 61 LEAKHLLLLNYCQSIVYYLLRKAK----GLSIEGHP--VVQSLVEIRLFLEKI 107 (325)
Q Consensus 61 L~~K~~lLLsY~~nL~~ylllK~~----g~si~~hP--vv~rLve~R~~LeKi 107 (325)
..+|-+ +||||+.|+.++-.+.. +.....|- +-.+.-..+.++.|+
T Consensus 62 tDaKLN-yLs~tqrlasfl~h~~~~~~~~~~~C~H~~iL~~K~e~f~~VI~Kf 113 (125)
T PHA03225 62 TDAKLN-YLAHTANLAAALRYDCAGDLDGGRMCAHAELIARRRERFAKILNKF 113 (125)
T ss_pred hHHHHH-HHHHHHHHHHHHHhccccCCCCCCcChhHHHHHHHHHHHHHHHHHH
Confidence 344544 57999999998888733 33334452 233444444455443
No 8
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=53.47 E-value=44 Score=30.10 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=47.9
Q ss_pred hhHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 020478 10 ISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLL 80 (325)
Q Consensus 10 ~~~~~l~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~yll 80 (325)
.++.-|..+.-++..-++++-..|.++...|..+...-... +.....-.--.+.+..||+|.+-|+-|-.
T Consensus 29 ~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~~-~~~~~~~~~~~v~~~eLL~YA~rISk~t~ 98 (188)
T PF10018_consen 29 ARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQADEK-LKSIPKAEKRPVDYEELLSYAHRISKFTS 98 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccccCCCCHHHHHHHHHHHHHhcC
Confidence 46677888889999999999999998888888877321111 11111122233457899999999998743
No 9
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=49.84 E-value=57 Score=33.10 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=68.5
Q ss_pred chhHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCC---CCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 020478 9 SISDERVKKEAPQLAALLREMKEGLDKLRSKVQS----LITKVKGNN---YPTVDGISYLEAKHLLLLNYCQSIVYYLLR 81 (325)
Q Consensus 9 ~~~~~~l~kdsPEl~~LLkel~~~l~~v~~~v~~----L~~~vk~~~---~~~~~GislL~~K~~lLLsY~~nL~~ylll 81 (325)
-+.+++|.+|+.|+..++++|++.+..+...... |........ .....-+..|..-..-|-+|+..+.-+--.
T Consensus 240 ~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~ 319 (412)
T PF04108_consen 240 QEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEER 319 (412)
T ss_pred HHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999988877766 433221100 011222333332222455565555433221
Q ss_pred Hh-cCCCCC-------------------CChHHHHHHHHHHHHHHHhhHHHhhHHHHHHHh
Q 020478 82 KA-KGLSIE-------------------GHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLT 122 (325)
Q Consensus 82 K~-~g~si~-------------------~hPvv~rLve~R~~LeKirpLe~kL~yQIdKLl 122 (325)
-. ...++. .+-++..+.+-|.+-++|+-+-..+.-|+++|.
T Consensus 320 ~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~ 380 (412)
T PF04108_consen 320 WEEEKESIQAYIDELEQLCEFYEGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDKLR 380 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 000110 123566666667777778888888888998888
No 10
>PF03581 Herpes_UL33: Herpesvirus UL33-like protein; InterPro: IPR005208 This is a family of Herpesvirus proteins including UL33 P10217 from SWISSPROT,UL51 P16792 from SWISSPROT. The proteins in this family are involved in packaging viral DNA.; GO: 0019073 viral DNA genome packaging
Probab=44.69 E-value=50 Score=26.06 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCh--HHHHHHHHHHHHHHHh
Q 020478 68 LLNYCQSIVYYLLRKAKGLSIEGHP--VVQSLVEIRLFLEKIR 108 (325)
Q Consensus 68 LLsY~~nL~~ylllK~~g~si~~hP--vv~rLve~R~~LeKir 108 (325)
+||||+.|+.++-.+..+.....|- +-.+.-..+.++.|+=
T Consensus 25 ~Ln~~q~la~fl~~~~~~~~~C~H~~vl~~K~e~~~~vi~K~l 67 (75)
T PF03581_consen 25 YLNYCQRLASFLRHRHGQGAACEHGEVLERKRERFAQVINKFL 67 (75)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 5799999999888777755555553 2344444555555543
No 11
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=39.64 E-value=3e+02 Score=29.43 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=56.3
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHH----HHHHHHHHHHH----HhhHHHhhHHHHHHHhhh
Q 020478 53 PTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQ----SLVEIRLFLEK----IRPIDRKLQYQIQKLTSV 124 (325)
Q Consensus 53 ~~~~GislL~~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~----rLve~R~~LeK----irpLe~kL~yQIdKLl~~ 124 (325)
.-+..+++|+.+ |-+--..|.-|.-+...|.+|..|-|+. .+..+|.++++ +..+++-+.-|+++|=
T Consensus 161 ~~Ge~~~~lEk~---Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk-- 235 (570)
T COG4477 161 QYGEAAPELEKK---LENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLK-- 235 (570)
T ss_pred hhhhhhHHHHHH---HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 445677888875 4455678889999999999999888765 56788999998 6778888888999887
Q ss_pred hhcCCC
Q 020478 125 RVGGNA 130 (325)
Q Consensus 125 ~a~~~~ 130 (325)
..++++
T Consensus 236 ~Gyr~m 241 (570)
T COG4477 236 AGYRDM 241 (570)
T ss_pred HHHHHH
Confidence 545443
No 12
>PF15467 SGIII: Secretogranin-3
Probab=33.84 E-value=61 Score=32.81 Aligned_cols=45 Identities=33% Similarity=0.483 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHHHHH-----HHHHHHHHHHH----HhhcCCCCCCCCccHHH
Q 020478 18 EAPQLAALLREMKEGLD-----KLRSKVQSLIT----KVKGNNYPTVDGISYLE 62 (325)
Q Consensus 18 dsPEl~~LLkel~~~l~-----~v~~~v~~L~~----~vk~~~~~~~~GislL~ 62 (325)
=+|.|-.||+.|..--+ .+-..+..|+. .|+-|.+.+.+|+|||+
T Consensus 266 YFPNFy~LLkSldSE~dakEkeTLITIMKTLIDFVKMMVKYGTItPEEGVsYLE 319 (453)
T PF15467_consen 266 YFPNFYALLKSLDSEKDAKEKETLITIMKTLIDFVKMMVKYGTITPEEGVSYLE 319 (453)
T ss_pred hchhHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHhcCcChhhhhHHHH
Confidence 47999999998864221 12222233333 34678889999998877
No 13
>PF12432 DUF3677: Protein of unknown function (DUF3677) ; InterPro: IPR022145 This domain family is found in eukaryotes, and is approximately 80 amino acids in length.
Probab=30.88 E-value=43 Score=26.59 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Q 020478 63 AKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFL 104 (325)
Q Consensus 63 ~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~rLve~R~~L 104 (325)
+.|.-+.-+.+.+..+++..+.+.+..||.+++.|+++|.--
T Consensus 26 lqn~kl~r~a~elL~~l~~n~~~~~~~D~e~i~~Llkl~lk~ 67 (83)
T PF12432_consen 26 LQNPKLQRPAQELLSSLCYNCDSHSPEDSEVIDNLLKLRLKS 67 (83)
T ss_pred hhccccchHHHHHHHHHHhcccCCchhhHHHHHHHHHHhhcc
Confidence 455566667777777788888888999999999999887543
No 14
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=24.57 E-value=5.2e+02 Score=25.29 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=24.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHh
Q 020478 56 DGISYLEAKHLLLLNYCQSIVYYLLRKA 83 (325)
Q Consensus 56 ~GislL~~K~~lLLsY~~nL~~ylllK~ 83 (325)
--++||.-|.++|-+-+.+|..++--|.
T Consensus 83 tH~~~L~~K~~~Lq~m~shLe~VLk~K~ 110 (277)
T PF15003_consen 83 THPDYLAEKCEALQSMNSHLEAVLKEKD 110 (277)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4588999999999999999999886553
No 15
>PF07030 DUF1320: Protein of unknown function (DUF1320); InterPro: IPR009752 This entry is represented by the Bacteriophage Mu, Gp36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.22 E-value=2.2e+02 Score=24.03 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Q 020478 62 EAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKI 107 (325)
Q Consensus 62 ~~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~rLve~R~~LeKi 107 (325)
..-..+|..+|..|+.|.|....+... .+++..+-=.....|++|
T Consensus 57 ~~~p~~L~~~~~dIA~y~L~~~~~~~~-~e~~~~rY~~A~~~L~~i 101 (130)
T PF07030_consen 57 APVPALLKRIACDIARYRLYDRRPSQE-TEPVRERYKDAIKWLEDI 101 (130)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCccC-cHHHHHHHHHHHHHHHHH
Confidence 333567899999999999877666554 566666655444444443
No 16
>PHA03236 DNA packaging protein UL33; Provisional
Probab=20.15 E-value=1.9e+02 Score=25.02 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 020478 68 LLNYCQSIVYYLLRKA 83 (325)
Q Consensus 68 LLsY~~nL~~ylllK~ 83 (325)
+||||+.|+.++-.+.
T Consensus 64 yLs~tqrLasfl~h~~ 79 (127)
T PHA03236 64 YLSFTRRLASVLRHGR 79 (127)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 5789999998877754
Done!