Query 020478
Match_columns 325
No_of_seqs 189 out of 324
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:34:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hpq_C ATG17, KLTH0D15642P; au 70.1 8.6 0.00029 37.9 6.9 111 10-123 235-371 (413)
2 3rh3_A Uncharacterized DUF3829 54.6 34 0.0011 31.8 7.4 88 11-107 81-174 (264)
3 2dnx_A Syntaxin-12; snare, HAB 52.9 29 0.00098 28.3 6.1 63 17-81 7-69 (130)
4 3iee_A Putative exported prote 24.5 2E+02 0.0069 26.6 7.4 88 11-107 89-182 (270)
5 2akf_A Coronin-1A; coiled coil 16.0 2.2E+02 0.0075 17.8 3.9 27 15-41 4-30 (32)
6 1fio_A SSO1 protein; four heli 16.0 3.7E+02 0.013 22.3 6.9 66 17-82 2-68 (196)
7 4h63_H Mediator of RNA polymer 15.4 4.4E+02 0.015 23.0 7.3 61 18-80 5-65 (200)
8 4h8s_A DCC-interacting protein 12.2 6.2E+02 0.021 23.6 8.0 33 16-48 36-68 (407)
9 1xkm_B Distinctin chain B; por 11.2 1.9E+02 0.0066 17.1 2.5 16 93-108 2-17 (26)
10 1gk7_A Vimentin; intermediate 9.7 1.1E+02 0.0039 20.0 1.2 19 101-119 16-37 (39)
No 1
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=70.06 E-value=8.6 Score=37.86 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=68.7
Q ss_pred hhHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Q 020478 10 ISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI- 88 (325)
Q Consensus 10 ~~~~~l~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK~~g~si- 88 (325)
+.++++++|+.|+..+++++++.+..+...+..+...+.... ...-++-..=.+++-.|..+.-|+.++..-+.-+
T Consensus 235 elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~---~~~~~l~~~~~~l~~~~~~~~e~l~i~~~i~e~l~ 311 (413)
T 4hpq_C 235 NLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERD---ADKAKMQATLSKLLTELRKHEEYISVFEGISALIQ 311 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 578999999999999999999998887777665544442210 1122222222344444444333433332211100
Q ss_pred ----------------C---------CChHHHHHHHHHHHHHHHhhHHHhhHHHHHHHhh
Q 020478 89 ----------------E---------GHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTS 123 (325)
Q Consensus 89 ----------------~---------~hPvv~rLve~R~~LeKirpLe~kL~yQIdKLl~ 123 (325)
. -+-.+..+.+-|.+.+++..+-+++.-|+++|..
T Consensus 312 ~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e 371 (413)
T 4hpq_C 312 KFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINT 371 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1235666667778888888888888999999884
No 2
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=54.61 E-value=34 Score=31.75 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=61.8
Q ss_pred hHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHH---HHHHHHHHHHHHHH---Hhc
Q 020478 11 SDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLL---LLNYCQSIVYYLLR---KAK 84 (325)
Q Consensus 11 ~~~~l~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~~~~~~~GislL~~K~~l---LLsY~~nL~~ylll---K~~ 84 (325)
..+.|.+..-+|..-...|... ...++..++...+ ..|-.|+.+++.+ |.-|-.+|.-.|-- +++
T Consensus 81 ~r~~L~q~~~~lf~s~~~~yan-------~~~~~SYlk~ed~--~~~akL~~~~~~l~~em~e~k~~ifd~lsp~aeqAE 151 (264)
T 3rh3_A 81 VRQNLKQNYAGLFNVRTQFYDN-------FNKFLAYKKSKDT--AKTAQLLDENYKLSVELSEYKQVIFDILSPLTEQAE 151 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5566666666665555555554 3444555555443 5899999999999 88788887766543 567
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH
Q 020478 85 GLSIEGHPVVQSLVEIRLFLEKI 107 (325)
Q Consensus 85 g~si~~hPvv~rLve~R~~LeKi 107 (325)
...+.|||+-+.++..|.++-.+
T Consensus 152 ~vlL~DhPLKeqIla~kkm~~~~ 174 (264)
T 3rh3_A 152 SELLADEPLKDQIMAMRKMSGTV 174 (264)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHccCchHHHHHHHHHHHHHH
Confidence 77899999999999877666543
No 3
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.88 E-value=29 Score=28.35 Aligned_cols=63 Identities=6% Similarity=0.077 Sum_probs=50.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 020478 17 KEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLR 81 (325)
Q Consensus 17 kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~ylll 81 (325)
.+.|||..|...+...|..+...|..|-..+.. +.|.....=|.-+-|-+..||..|+==+-.
T Consensus 7 ~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~--LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~ 69 (130)
T 2dnx_A 7 GQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQ--LGTKQDSSKLQENLQQLQHSTNQLAKETNE 69 (130)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999888877754 445556666888888899999888754433
No 4
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=24.46 E-value=2e+02 Score=26.62 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=53.9
Q ss_pred hHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHH---HHHHHHHHHHHHHH---Hhc
Q 020478 11 SDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLL---LLNYCQSIVYYLLR---KAK 84 (325)
Q Consensus 11 ~~~~l~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~~~~~~~GislL~~K~~l---LLsY~~nL~~ylll---K~~ 84 (325)
..+.|.+..-+|..-...|... ...+...++...+ ..|--++.+++.+ +..|-.+|.-.|-. +++
T Consensus 89 ~rqnL~q~~~~lf~s~~~~~an-------~~~~~sYlkaed~--kkgkKL~~~n~~l~~~~~e~k~~ifd~Lsp~aeqAE 159 (270)
T 3iee_A 89 TRRNLKQNYTGLFQARTEFYAN-------FDTYLSYLKKKDV--TNAKKLLDVNYQLSTQMSEYKQNIFDILSPFTEQAE 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444444444444444444443 4444555555433 3777788877765 44566666555443 566
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH
Q 020478 85 GLSIEGHPVVQSLVEIRLFLEKI 107 (325)
Q Consensus 85 g~si~~hPvv~rLve~R~~LeKi 107 (325)
...+.+||+-+.++..|.++..+
T Consensus 160 ~~lL~DhPLKeqIla~kkm~~~~ 182 (270)
T 3iee_A 160 LVLLVDNPLKAQIMSVRKMSSTM 182 (270)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHccCchHHHHHHHHHHHHHH
Confidence 77899999999999988876543
No 5
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=16.04 E-value=2.2e+02 Score=17.78 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=18.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHH
Q 020478 15 VKKEAPQLAALLREMKEGLDKLRSKVQ 41 (325)
Q Consensus 15 l~kdsPEl~~LLkel~~~l~~v~~~v~ 41 (325)
|..+.-.|.++++++...++.+.+.|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667777777777777777665
No 6
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=15.99 E-value=3.7e+02 Score=22.32 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=45.9
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 020478 17 KEAPQLAALLREMKEGLDKLRSKVQSLITKVKG-NNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRK 82 (325)
Q Consensus 17 kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~-~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK 82 (325)
.+.|+|.....++...|..+...|..|-.+... ...+...-.+-+.-+-+-+...+..++--+-.+
T Consensus 2 ~~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~ 68 (196)
T 1fio_A 2 HDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNE 68 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999998777654 111111111246667777778877777665444
No 7
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=15.41 E-value=4.4e+02 Score=23.05 Aligned_cols=61 Identities=8% Similarity=0.158 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 020478 18 EAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLL 80 (325)
Q Consensus 18 dsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~yll 80 (325)
.+++-+..|..+...+.++..++..|+..+.... +.. -=+=|.-++.+|++-+++|+-.|-
T Consensus 5 ~~~~~~~~LEs~R~Rl~qL~~Sl~~l~~~l~~~~-~lp-~W~sll~q~~vl~~qL~sl~~~L~ 65 (200)
T 4h63_H 5 STEKTVESLEAIRHRIAQIVQSLTHFLAILHQSE-SLS-PWPTIHKNFNILLSQIHSLSNNLA 65 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566789999999999999999998875422 212 223356678999999999998773
No 8
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=12.18 E-value=6.2e+02 Score=23.56 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=28.3
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020478 16 KKEAPQLAALLREMKEGLDKLRSKVQSLITKVK 48 (325)
Q Consensus 16 ~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk 48 (325)
-.|+|.|-+.|..+.+.++.+...+..+++..+
T Consensus 36 ~~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~ 68 (407)
T 4h8s_A 36 LQDSPQTRSLLSVFEEDAGTLTDYTNQLLQAMQ 68 (407)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999998888877553
No 9
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=11.22 E-value=1.9e+02 Score=17.08 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 020478 93 VVQSLVEIRLFLEKIR 108 (325)
Q Consensus 93 vv~rLve~R~~LeKir 108 (325)
.|.-|++.|.+||++.
T Consensus 2 lvsgliearkyleqlh 17 (26)
T 1xkm_B 2 LVSGLIEARKYLEQLH 17 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4677899999998753
No 10
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=9.69 E-value=1.1e+02 Score=20.01 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=12.7
Q ss_pred HHHHHHHhhHHH---hhHHHHH
Q 020478 101 RLFLEKIRPIDR---KLQYQIQ 119 (325)
Q Consensus 101 R~~LeKirpLe~---kL~yQId 119 (325)
=.+|+|++.||. +|..+|.
T Consensus 16 AsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 16 ANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888884 3555553
Done!