Query 020478
Match_columns 325
No_of_seqs 189 out of 324
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 03:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020478.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020478hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2elba1 a.238.1.1 (A:6-273) DC 25.4 76 0.0055 25.7 6.9 33 16-48 8-40 (268)
2 d1ud0a_ a.8.4.1 (A:) DnaK {Rat 16.4 81 0.0059 21.6 4.3 25 25-49 52-76 (84)
3 d1st6a4 a.24.9.1 (A:372-488) V 9.9 1.5E+02 0.011 22.1 4.3 28 17-44 83-110 (117)
4 d1chua1 a.7.3.1 (A:423-533) L- 8.7 2.6E+02 0.019 19.8 5.3 21 58-78 63-83 (111)
5 d1sumb_ a.7.12.1 (B:) PhoU hom 8.3 1.9E+02 0.014 22.5 4.8 74 17-90 138-214 (225)
6 d1st6a3 a.24.9.1 (A:253-371) V 8.3 1.6E+02 0.011 22.0 3.8 25 18-42 93-117 (119)
7 d1neka1 a.7.3.1 (A:451-588) Su 7.0 4.3E+02 0.031 19.2 7.2 22 58-79 61-82 (138)
8 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 6.9 4.1E+02 0.03 19.2 6.0 59 18-76 3-62 (196)
9 d2cbia1 a.246.1.1 (A:496-624) 6.4 1.3E+02 0.0092 22.7 2.4 17 17-33 1-17 (129)
10 d2glia4 g.37.1.1 (A:198-228) F 6.1 1.1E+02 0.0081 17.7 1.4 19 304-325 12-30 (31)
No 1
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.35 E-value=76 Score=25.70 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=28.9
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020478 16 KKEAPQLAALLREMKEGLDKLRSKVQSLITKVK 48 (325)
Q Consensus 16 ~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk 48 (325)
-.|+|.|-+.|..+...+..+...+..+++..+
T Consensus 8 ~~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~ 40 (268)
T d2elba1 8 LEDSPQTRSLLGVFEEDATAISNYMNQLYQAMH 40 (268)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999988877553
No 2
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.37 E-value=81 Score=21.62 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 020478 25 LLREMKEGLDKLRSKVQSLITKVKG 49 (325)
Q Consensus 25 LLkel~~~l~~v~~~v~~L~~~vk~ 49 (325)
=..+|...+.++...+.|++.++-.
T Consensus 52 ~~ee~~~k~~eLe~~~~PI~~k~y~ 76 (84)
T d1ud0a_ 52 EKEEFEHQQKELEKVCNPIITKLYQ 76 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3578888999999999999887643
No 3
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.91 E-value=1.5e+02 Score=22.14 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.2
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020478 17 KEAPQLAALLREMKEGLDKLRSKVQSLI 44 (325)
Q Consensus 17 kdsPEl~~LLkel~~~l~~v~~~v~~L~ 44 (325)
-++|+...|.+.+.+.|.++...|+..+
T Consensus 83 G~sPeA~~lA~qi~~kL~~L~~~v~~Av 110 (117)
T d1st6a4 83 GDSPEARALAKQIATSLQNLQSKTNRAV 110 (117)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999998887654
No 4
>d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli [TaxId: 562]}
Probab=8.67 E-value=2.6e+02 Score=19.77 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q 020478 58 ISYLEAKHLLLLNYCQSIVYY 78 (325)
Q Consensus 58 islL~~K~~lLLsY~~nL~~y 78 (325)
-.+++++|.+.+++++..+-+
T Consensus 63 ~~~~el~nml~~A~~i~~aAl 83 (111)
T d1chua1 63 NNLLELRNLVQVAELIVRCAM 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999998776654
No 5
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=8.26 E-value=1.9e+02 Score=22.46 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=39.7
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCCCCCCccHHHH-H-HHHHHHHHHHHHHHHHHHhcCCCCCC
Q 020478 17 KEAPQLAALLREMKEGLDKLRSKV-QSLITKVKGNNYPTVDGISYLEA-K-HLLLLNYCQSIVYYLLRKAKGLSIEG 90 (325)
Q Consensus 17 kdsPEl~~LLkel~~~l~~v~~~v-~~L~~~vk~~~~~~~~GislL~~-K-~~lLLsY~~nL~~ylllK~~g~si~~ 90 (325)
...+++..-+-+..+.++.+...+ ..++..+.++......|+.|+.+ + ..=+-.||.||+-++..-..|..++.
T Consensus 138 ~~d~~~a~~v~~~d~~id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lERIgDh~~nIaE~v~y~~~G~~~~~ 214 (225)
T d1sumb_ 138 DVNVEKSFEVCRMDSKVDDLYEKVREELLLYMMESPKYVKRALLLLEIAGNIEIIADYATNIVEVSVYMVQGEAYKC 214 (225)
T ss_dssp SCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEE
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeee
Confidence 344444444444444454443332 22333333433333456666553 2 23466799999988887788877653
No 6
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=8.25 E-value=1.6e+02 Score=22.05 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 020478 18 EAPQLAALLREMKEGLDKLRSKVQS 42 (325)
Q Consensus 18 dsPEl~~LLkel~~~l~~v~~~v~~ 42 (325)
.+|+...|-+.|.+.|.++...|+.
T Consensus 93 ~sPeA~~lA~qi~~kL~~L~~~v~~ 117 (119)
T d1st6a3 93 ATPMAMQKAQQVSQGLDLLTAKVEN 117 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999988887764
No 7
>d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=6.96 E-value=4.3e+02 Score=19.21 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 020478 58 ISYLEAKHLLLLNYCQSIVYYL 79 (325)
Q Consensus 58 islL~~K~~lLLsY~~nL~~yl 79 (325)
+..++++|.+.+++++..+-+.
T Consensus 61 ~~~~el~n~l~~a~~i~~aAl~ 82 (138)
T d1neka1 61 VECLELDNLMETAYATAVSANF 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999998887643
No 8
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.88 E-value=4.1e+02 Score=19.20 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCccHHHHHHHHHHHHHHHHH
Q 020478 18 EAPQLAALLREMKEGLDKLRSKVQSLITKVKG-NNYPTVDGISYLEAKHLLLLNYCQSIV 76 (325)
Q Consensus 18 dsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~-~~~~~~~GislL~~K~~lLLsY~~nL~ 76 (325)
|.++|...+.+|+..|..+...+..|-..... ....+.....-+.-.-..+.+.+..+.
T Consensus 3 d~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 62 (196)
T d1fioa_ 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQ 62 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999888877655432 112233334445544555555555554
No 9
>d2cbia1 a.246.1.1 (A:496-624) Hyaluronidase, post-catalytic domain 3 {Clostridium perfringens [TaxId: 1502]}
Probab=6.41 E-value=1.3e+02 Score=22.69 Aligned_cols=17 Identities=35% Similarity=0.560 Sum_probs=14.0
Q ss_pred hccHHHHHHHHHHHHHH
Q 020478 17 KEAPQLAALLREMKEGL 33 (325)
Q Consensus 17 kdsPEl~~LLkel~~~l 33 (325)
.+||||.++|.+|.+++
T Consensus 1 eES~EL~~~l~~f~~kl 17 (129)
T d2cbia1 1 EDAPELRAKMDELWNKL 17 (129)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 37899999999998754
No 10
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.09 E-value=1.1e+02 Score=17.74 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=14.0
Q ss_pred ccccCCCcCCcchhhhhhccCC
Q 020478 304 TNVSNGSRGMGKLEKRKVYHSN 325 (325)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
..|+|.+ -++|-..|.||+
T Consensus 12 KafsNsS---DraKHqnRTHs~ 30 (31)
T d2glia4 12 KAFSNAS---DRAKHQNRTHSN 30 (31)
T ss_dssp CEESSSS---TTHHHHHHTTCS
T ss_pred hhhcchh---hhhhhccccccC
Confidence 4577766 368888899986
Done!