BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020480
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/269 (64%), Positives = 209/269 (77%), Gaps = 2/269 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD P GKD+S+ +++LGTHTS+
Sbjct: 15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A VQLP DD++ DA HYD ++ +FGGFG +GK++I +INH+GEVNRARYM
Sbjct: 75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQNP +IATKT S++V VFDY+KHPSKP G C+PDLRLRGH EGYGLSW+ GHL
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD ICLWDI+A PK K ++A IF H VVEDV+WHL HE LFGSV DDQ L+
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
IWD R+ + SKP SV AH +EV N
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
H EVN + P + F++AT + V ++D +L+L+ HS E
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHSFESHK 317
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
+ + WS E L S D ++ +WD++ + +S E + I H +
Sbjct: 318 DEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDL 257
D +W+ ++ SV +D + +W +
Sbjct: 378 SDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 165 DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224
+ P + H+ E LS++ + E L +GS D + LWD+ +N L+ + F+
Sbjct: 260 NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKLK-LHSFE 314
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
H+ + V W +E + S G D+ L +WDL
Sbjct: 315 SHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK-HPSKPPLDGACSPD 171
N K+++ +H E+ + ++ P N ++A+ + V+D SK + P D P
Sbjct: 305 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP 364
Query: 172 LRL---RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208
L GH+ + SW+ + + S S+D + +W +
Sbjct: 365 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 171/269 (63%), Positives = 206/269 (76%), Gaps = 2/269 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD + GKDYSV ++ILGTHTS+
Sbjct: 19 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 78
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A VQLP +D++ D HYD+++ +FGGFG GK++I +INH+GEVNRARYM
Sbjct: 79 -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 137
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQN +IATKT S++V VFDY+KHPSKP G C PDLRLRGH EGYGLSW+ G+L
Sbjct: 138 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD ICLWDINA PK ++ ++A IF H VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
IWD R + SKP +V AH +EV N
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
H EVN + P + F++AT + V ++D +L+L+ HS E
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHSFESHK 321
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
+ + WS E L S D ++ +WD++ + +S E + I H +
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDL 257
D +W+ ++ SV +D + +W +
Sbjct: 382 SDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 165 DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224
+ P + H+ E LS++ + E L +GS D + LWD+ +N L+ + F+
Sbjct: 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKLK-LHSFE 318
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
H+ + V W +E + S G D+ L +WDL
Sbjct: 319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA--CSP 170
N K+++ +H E+ + ++ P N ++A+ ++V+D SK + + A P
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 368
Query: 171 DLRL--RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208
+L GH+ + SW+ + + S S+D + +W +
Sbjct: 369 ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 171/269 (63%), Positives = 206/269 (76%), Gaps = 2/269 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD + GKDYSV ++ILGTHTS+
Sbjct: 21 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 80
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A VQLP +D++ D HYD+++ +FGGFG GK++I +INH+GEVNRARYM
Sbjct: 81 -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 139
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQN +IATKT S++V VFDY+KHPSKP G C PDLRLRGH EGYGLSW+ G+L
Sbjct: 140 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 199
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD ICLWDINA PK ++ ++A IF H VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 200 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 259
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
IWD R + SKP +V AH +EV N
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
H EVN + P + F++AT + V ++D +L+L+ HS E
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHSFESHK 323
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
+ + WS E L S D ++ +WD++ + +S E + I H +
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDL 257
D +W+ ++ SV +D + +W +
Sbjct: 384 SDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 165 DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224
+ P + H+ E LS++ + E L +GS D + LWD+ +N L+ + F+
Sbjct: 266 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKLK-LHSFE 320
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
H+ + V W +E + S G D+ L +WDL
Sbjct: 321 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA--CSP 170
N K+++ +H E+ + ++ P N ++A+ ++V+D SK + + A P
Sbjct: 311 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 370
Query: 171 DLRL--RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208
+L GH+ + SW+ + + S S+D + +W +
Sbjct: 371 ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 354 bits (909), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 171/269 (63%), Positives = 206/269 (76%), Gaps = 2/269 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD + GKDYSV ++ILGTHTS+
Sbjct: 23 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 82
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A VQLP +D++ D HYD+++ +FGGFG GK++I +INH+GEVNRARYM
Sbjct: 83 -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 141
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQN +IATKT S++V VFDY+KHPSKP G C PDLRLRGH EGYGLSW+ G+L
Sbjct: 142 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 201
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD ICLWDINA PK ++ ++A IF H VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 202 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 261
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
IWD R + SKP +V AH +EV N
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
H EVN + P + F++AT + V ++D +L+L+ HS E
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHSFESHK 325
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
+ + WS E L S D ++ +WD++ + +S E + I H +
Sbjct: 326 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDL 257
D +W+ ++ SV +D + +W +
Sbjct: 386 SDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 165 DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224
+ P + H+ E LS++ + E L +GS D + LWD+ +N L+ + F+
Sbjct: 268 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKLK-LHSFE 322
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
H+ + V W +E + S G D+ L +WDL
Sbjct: 323 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA--CSP 170
N K+++ +H E+ + ++ P N ++A+ ++V+D SK + + A P
Sbjct: 313 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 372
Query: 171 DLRL--RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208
+L GH+ + SW+ + + S S+D + +W +
Sbjct: 373 ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 352 bits (904), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 168/269 (62%), Positives = 206/269 (76%), Gaps = 2/269 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV+THAL+WPSLTV+WLP+ +P GKDY++ ++LGTHTS+
Sbjct: 17 RVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A+V +P DD++ DA H D D+ +FGGFG GK++ +INH+GEVNRARYM
Sbjct: 77 -EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYM 135
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQNP +IATKT S++V VFDY+KHP+KP G C+PDLRLRGH EGYGLSW+ GHL
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL 195
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD +CLWDINA PK K ++A IF H VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 255
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
IWD R+ + SKP V AH +EV N
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
H EVN + P + F++AT + V ++D +L+L+ H+ E
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHTFESHK 319
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
+ + WS E L S D ++ +WD++ + +S E + I H +
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDL 257
D +W+ ++ SV +D + IW +
Sbjct: 380 SDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV 229
P + H+ E LS++ + E L +GS D + LWD+ +N L+ + F+ H+
Sbjct: 267 PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKLK-LHTFESHKDE 321
Query: 230 VEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
+ V W +E + S G D+ L +WDL
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 347 bits (890), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 167/269 (62%), Positives = 203/269 (75%), Gaps = 2/269 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV THAL+WPSLTV+WLP+ +P GKDY++ ++LGTHTS+
Sbjct: 17 RVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A+V +P DD++ DA H D D+ +FGGFG GK++ +INH+GEVNRARY
Sbjct: 77 -EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYX 135
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQNP +IATKT S++V VFDY+KHP+KP G C+PDLRLRGH EGYGLSW+ GHL
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL 195
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD +CLWDINA PK K ++A IF H VVEDVAWHL HE LFGSV DDQ L
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLX 255
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
IWD R+ + SKP V AH +EV N
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV 229
P + H+ E LS++ + E L +GS D + LWD+ +N L+ + F+ H+
Sbjct: 267 PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKLK-LHTFESHKDE 321
Query: 230 VEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
+ V W +E + S G D+ L +WDL
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 27/145 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
H EVN + P + F++AT + V ++D +L+L+ H+ E
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHTFESHK 319
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
+ + WS E L S D ++ +WD++ + +S E + I H +
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIW 255
D +W+ ++ SV +D IW
Sbjct: 380 SDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GHS E GL W+ HL SG +D + +W +AP +Q F H+G V+ V
Sbjct: 237 LSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP--SAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 234 AWHLRHEYLFGSVG--DDQYLLIWDL 257
AW + + G D+++ IW++
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNV 319
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GHS E GL W+ HL SG +D + +W +AP +Q F H+G V+ V
Sbjct: 226 LSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP--SAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 234 AWHLRHEYLFGSVG--DDQYLLIWDL 257
AW + + G D+++ IW++
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNV 308
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GHS E GL W+ HL SG +D + +W +AP +Q F H+G V+ V
Sbjct: 146 LSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP--SAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 234 AWHLRHEYLFGSVG--DDQYLLIWDL 257
AW + + G D+++ IW++
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNV 228
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVED 232
+ GH+ ++W + + SGS+D + +W+I L E + + H V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRT 259
VAWH + + S G D +L+WD+ T
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGT 163
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 23/188 (12%)
Query: 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY 182
H V + P N +IA+ + V V++ PL P + L GH+
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR---EPVITLEGHTKRVG 135
Query: 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
++W + LLS D I +WD+ +L VH + V W R L
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP----DVHPDTIYSVDWS-RDGAL 190
Query: 243 FGSVGDDQYLLIWDLRTPSV----------SKPVQSVVAHQSEVGVSILNASF-RLSHED 291
+ D+ + + + R +V ++PV +V + + IL F R+S
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK----ILTTGFSRMSERQ 246
Query: 292 TCTCTHRH 299
+H
Sbjct: 247 VALWDTKH 254
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVEDVA 234
GH+ ++W + + SGS+D + +W+I L E + + H V VA
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 235 WHLRHEYLFGSVGDDQYLLIWDLRT 259
WH + + S G D +L+WD+ T
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGT 163
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 18/164 (10%)
Query: 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY 182
H V + P N +IA+ + V V++ PL P + L GH+
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR---EPVITLEGHTKRVG 135
Query: 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
++W + LLS D I +WD+ +L VH + V W R L
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP----DVHPDTIYSVDWS-RDGAL 190
Query: 243 FGSVGDDQYLLIWDLRTPSV----------SKPVQSVVAHQSEV 276
+ D+ + + + R +V ++PV +V + ++
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI 234
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS----LEAMQIFKVHEG 228
R HS+ + ++ ++ L SG ++ +I +WD+N ++ S L Q +
Sbjct: 108 RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167
Query: 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258
V+ +AW+ ++F S G + IWDL+
Sbjct: 168 VIS-LAWNQSLAHVFASAGSSNFASIWDLK 196
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 69/165 (41%), Gaps = 13/165 (7%)
Query: 112 ANGKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP 170
AN + + + NH V ++ + ++A+ + E++++D +K P +P
Sbjct: 99 ANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP 158
Query: 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV 230
+ E L+W++ S +WD+ A K + + + G+
Sbjct: 159 GQSMSS-VDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNSGIK 214
Query: 231 ED---VAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSV 269
+ V WH ++ + +D +LIWDLR + + P+Q++
Sbjct: 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR--NANTPLQTL 257
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 196 SGSD-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254
+GSD D I +WD+ A N L+ + + H+ + + W + E+L S G D +L+
Sbjct: 234 TGSDNDPSILIWDLRNA--NTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289
Query: 255 WD 256
W+
Sbjct: 290 WN 291
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L+GH+ Y L +F H++SGS D I +WD+ + H+ + +
Sbjct: 275 LQGHTNRVYSL---QFDGIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGM 325
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHED 291
L+ L S D + IWD++T + +Q HQS V N +F ++ D
Sbjct: 326 --ELKDNILV-SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 380
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
H G + +Y+P + T + ++D + + + G+ P GH+ +
Sbjct: 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGSEFPS----GHTADVLS 210
Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243
LS + +SGS D + LWD+ + A++ + HEG + V + + F
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQR-F 264
Query: 244 GSVGDDQYLLIWDLRT 259
G+ DD ++D+RT
Sbjct: 265 GTGSDDGTCRLFDMRT 280
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 141 IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200
+A + + +F+ S + DG L GH + +E L++GS D
Sbjct: 123 VACGGLDSACSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260
LWD+ + S+ + H V ++ + + +F S D + +WDLR
Sbjct: 180 QTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI- 237
Query: 261 SVSKPVQSVVAHQSEV 276
S+ V++ H+ ++
Sbjct: 238 -TSRAVRTYHGHEGDI 252
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEA-MQIFKVHEGVVEDVAWHLRHEYLFG-SVGDDQY 251
L+SGS D + +W + +N + H V D+A L E F S D+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA--LSQENCFAISSSWDKT 99
Query: 252 LLIWDLRTPSVSKPVQSVVAHQSEV 276
L +WDLRT + K V HQSEV
Sbjct: 100 LRLWDLRTGTTYK---RFVGHQSEV 121
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
WD N + + FK HE V ++ +Y+ + G D+ LLIWD+
Sbjct: 192 WDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDI 242
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 187 SKFKEG-HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS 245
S F +G +SG D + +WD++ KS + H V VA + +F S
Sbjct: 146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS------YNAHSSEVNCVAACPGKDTIFLS 199
Query: 246 VGDDQYLLIWDLRTP 260
G+D +L+WD R P
Sbjct: 200 CGEDGRILLWDTRKP 214
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 144 KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203
+T ++VF K P P + C+ ++ T+ ++W E +L SD +
Sbjct: 66 RTWGGSIWVF---KDPEGAPNESLCTAGVQTEAGVTD---VAW--VSEKGILVASDSGAV 117
Query: 204 CLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262
LW+I + +SL + K H+ +V+ ++ S G D + +WDL +V
Sbjct: 118 ELWEI---LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV-SGGKDFSVKVWDLSQKAV 173
Query: 263 SKPVQSVVAHQSEV 276
++S AH SEV
Sbjct: 174 ---LKSYNAHSSEV 184
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GH+ L ++ E +++GS D+ + +WD+N +L +H +
Sbjct: 169 LTGHTGSVLCL---QYDERVIITGSSDSTVRVWDVNTGEMLNTL-------IHHC---EA 215
Query: 234 AWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV 278
HLR + + + D+ + +WD+ +P+ + +V H++ V V
Sbjct: 216 VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GH G++ ++++ ++SGS D I LWDI +++ + HE +V +
Sbjct: 292 LNGHKR---GIACLQYRDRLVVSGSSDNTIRLWDIECGA------CLRVLEGHEELVRCI 342
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDL------RTPSVSKPVQSVVAHQSEV 276
+ + S D + +WDL R P+ + ++++V H V
Sbjct: 343 RFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 388
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LLSGS D I +WD++ + H+ V V +H +++ S DD+ L
Sbjct: 311 LLSGSRDKTIKMWDVSTGM------CLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLR 363
Query: 254 IWDLRTPSVSKPVQS 268
+WD + K + +
Sbjct: 364 VWDYKNKRCMKTLNA 378
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF-GSVGDDQYL 252
+LS +DD + +WD KNK M+ HE V + +H Y+ GSV DQ +
Sbjct: 353 ILSCADDKTLRVWDY----KNK--RCMKTLNAHEHFVTSLDFHKTAPYVVTGSV--DQTV 404
Query: 253 LIWDLR 258
+W+ R
Sbjct: 405 KVWECR 410
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-------VHEGVVEDVAWHLRHEYLFGS 245
++LSG D I L+D+ + + + VH VE V W+ +F S
Sbjct: 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117
Query: 246 VGDDQYLLIWD---LRTPSVSKPVQSVVAH 272
D+ L +WD L+T V ++V +H
Sbjct: 118 SSFDKTLKVWDTNTLQTADVFNFEETVYSH 147
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 166 GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP------------K 213
G+CS L+GH E +SWS + L + S D+++ LWD+ A K
Sbjct: 176 GSCSH--ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233
Query: 214 NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256
++++E+ H G V + + +L +VG D + +W+
Sbjct: 234 SQAVESANT--AHNGKVNGLCFTSDGLHLL-TVGTDNRMRLWN 273
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 215 KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261
KS I + H + V+W R++Y+ + D + +WD+R S
Sbjct: 174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254
+SGS D I +WD+ + ++ H V VA + +F S +D +L+
Sbjct: 143 VSGSKDICIKVWDL------AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 255 WDLRTP 260
WD R P
Sbjct: 197 WDTRCP 202
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV-EDV 233
R H+ + ++ S K+ LS S+D +I LWD PK S QI G + +
Sbjct: 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR-CPKPAS----QIGCSAPGYLPTSL 220
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV 278
AWH + +F V D+ + + T S S + S V Q G+
Sbjct: 221 AWHPQQSEVF--VFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
++LSGSDD + LW+ N +LE Q F+ HE V VA++ + F S D+ +
Sbjct: 111 YVLSGSDDLTVKLWNWE---NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL 257
+W L
Sbjct: 166 KVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
++LSGSDD + LW+ N +LE Q F+ HE V VA++ + F S D+ +
Sbjct: 111 YVLSGSDDLTVKLWNWE---NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL 257
+W L
Sbjct: 166 KVWSL 170
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA-PKNKSLEAMQIFKVHEGVVED 232
L+GHS+E GL+W + L SG +D + +WD ++ PK H V+
Sbjct: 213 LQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN-------HNAAVKA 264
Query: 233 VAWHLRHEYLFGSVGD--DQYLLIWDLRT 259
VAW L + G D+ + W+ T
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAAT 293
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
++LSGSDD + LW+ N +LE Q F+ HE V VA++ + F S D+ +
Sbjct: 111 YVLSGSDDLTVKLWNWE---NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL 257
+W L
Sbjct: 166 KVWSL 170
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 38/167 (22%)
Query: 108 GFGCANGKVQIIQQIN---------HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH 158
FG NG ++I++ +N H V ++ LI++ AE+ V+++
Sbjct: 983 AFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD-DAEIQVWNWQ-- 1039
Query: 159 PSKPPLDGACSPDLRLRGH--STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS 216
LD + LRGH + + + L K LLS S D + +W+I K K
Sbjct: 1040 -----LDKC----IFLRGHQETVKDFRL----LKNSRLLSWSFDGTVKVWNIITGNKEKD 1086
Query: 217 LEAMQIFKVHEGVVEDVAWHLRHEYL-FGSVGDDQYLLIW--DLRTP 260
F H+G V ++ + H+ F S D+ IW DL P
Sbjct: 1087 ------FVCHQGTV--LSCDISHDATKFSSTSADKTAKIWSFDLLLP 1125
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ----IFKVHEGVV 230
RGH + +G+ +S L+ SDD I LW+ KN ++ Q +F+ +E +V
Sbjct: 885 RGHLSWVHGVMFSP-DGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMV 943
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL 281
V R + + G G YL + +S +Q + + IL
Sbjct: 944 LAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEIL 994
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
++LSGSDD + LW+ N +LE Q F+ HE V VA++ + F S D+ +
Sbjct: 111 YVLSGSDDLTVKLWN---WENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL--RTPSVS 263
+W L TP+ +
Sbjct: 166 KVWSLGQSTPNFT 178
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 101/271 (37%), Gaps = 72/271 (26%)
Query: 53 REEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCA 112
R PPG + + G+ +NE NY+ L + D + D D GGF
Sbjct: 38 RPLPPGSLQTAETFATGSW--DNEENYISLWSI--------GDFGNLDSD----GGF--- 80
Query: 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVF----------------DYS 156
G Q++ I H G+V ++ Q + A+ T V++ Y
Sbjct: 81 EGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYH 140
Query: 157 KHPSKPPLDGA-CS------PDLRLRGH----------------------STEGYGLSWS 187
P P A C+ P++ G S+ + +++
Sbjct: 141 TGPGSPSYSSAPCTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFL 200
Query: 188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV--EDVAWHLRHEYLFGS 245
+ E +L+ + Q+ +WD + + E QI + V V H +++ +
Sbjct: 201 RTPE--ILTVNSIGQLKIWDF----RQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVAT 254
Query: 246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276
G D L IWD+R ++ PV + AH++E+
Sbjct: 255 GGQDGMLSIWDVRQGTM--PVSLLKAHEAEM 283
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 17/164 (10%)
Query: 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY 182
N D A + P ++ ++ ++ ++D+ + ++P S L L G +
Sbjct: 188 NADSSTLHAVTFLRTPEILTVNSI-GQLKIWDFRQQGNEP------SQILSLTGDRVPLH 240
Query: 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EY 241
+ ++ + +G D + +WD+ SL K HE + +V +H + E+
Sbjct: 241 CVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSL-----LKAHEAEMWEVHFHPSNPEH 295
Query: 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF 285
LF + +D L WD S P +S + HQ + L+ S
Sbjct: 296 LF-TCSEDGSLWHWD---ASTDVPEKSSLFHQGGRSSTFLSHSI 335
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 83 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 135
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 136 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 191
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 14/143 (9%)
Query: 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-- 173
+ ++ + H + + P L A S + V ++K S D DL
Sbjct: 49 IDVLDETAHKKAIRSVAWRPHTSLLAAG---SFDSTVSIWAKEESA---DRTFEMDLLAI 102
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSG-SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
+ GH E G++WS +G+ L+ S D + +W+ + + E + + + H V+
Sbjct: 103 IEGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETD--ESGEEYECISVLQEHSQDVKH 158
Query: 233 VAWHLRHEYLFGSVGDDQYLLIW 255
V WH E L S D + IW
Sbjct: 159 VIWH-PSEALLASSSYDDTVRIW 180
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 194 LLSGSDDAQICLW-DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
L +GS D+ + +W +A + ++ + I + HE V+ VAW Y + D+ +
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSV 131
Query: 253 LIWDLRTPSVSKPVQSVVAHQSE 275
IW+ SV+ S+
Sbjct: 132 WIWETDESGEEYECISVLQEHSQ 154
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 85 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 137
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 138 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 193
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
H V+ ++ P +L A+ SA+ + + + K + + GH
Sbjct: 25 HTKAVSSVKFSPNGEWLAAS---SADKLIKIWGAYDGKF--------EKTISGHKLGISD 73
Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243
++WS L+S SDD + +WD+++ + ++ K H V ++ + L
Sbjct: 74 VAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSN-LI 125
Query: 244 GSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 172
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 177 HSTEGYGLSWSKFKEGHLLSGSDDA-QICLWDINAAPKNKSLE-AMQIFKVHEGVVEDVA 234
HS Y ++W + + DDA ++ D N+ P+ + + + H V VA
Sbjct: 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310
Query: 235 WHLRHEYLFGSVGDDQYLLIWDLRTP 260
W+ + L S DD + W + P
Sbjct: 311 WNPKEPGLLASCSDDGEVAFWKYQRP 336
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLL-SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
L GH E ++W+ G+LL + S D + +W+++ + E + + H V+
Sbjct: 101 LEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVD---EEDEYECVSVLNSHTQDVKH 155
Query: 233 VAWHLRHEYLFGSVGDDQYLL 253
V WH E L + DD L
Sbjct: 156 VVWHPSQELLASASYDDTVKL 176
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 119
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 120 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 175
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 57 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 109
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 110 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 165
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 61 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 113
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 114 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 169
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 119
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 120 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 175
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 172
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 172
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 61 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 113
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 114 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 169
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 78 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 130
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 131 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 186
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 62 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 114
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 115 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 170
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 119
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 120 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 175
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 66 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 118
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 119 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 174
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 60 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 112
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 113 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 168
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 172
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT-------PSVSKPVQSVVAHQSEVGVSILNASF 285
++ + L S D+ + IWD++T P+ S PV +V H + G I+++S+
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 172
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQ 250
+L+ S D LWD+ +S + +Q F H + D+A F S G D+
Sbjct: 168 QILTASGDGTCALWDV------ESGQLLQSFHGHGADVLCLDLA-PSETGNTFVSGGCDK 220
Query: 251 YLLIWDLRTPSVSKPVQSVVAHQSEV 276
++WD+R+ + VQ+ H+S+V
Sbjct: 221 KAMVWDMRS---GQCVQAFETHESDV 243
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV 246
L +D+ IC W P ++ E + K+H+ VVE + + G +
Sbjct: 166 LMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFYNGEI 217
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV 246
L +D+ IC W P ++ E + K+H+ VVE + + G +
Sbjct: 156 LMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFYNGEI 207
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
Length = 2060
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENE 76
+E +I+ F+ DL+ + A SL EW ++ P G D ++ H E++
Sbjct: 165 FDELREIYTTYPSFVEDLITSIAELLQSLAREWDAVKQYPKGLD-----ILQWLHNPESQ 219
Query: 77 P--NYLMLAQVQLPL 89
P +YL+ A V PL
Sbjct: 220 PDTDYLVSAPVSFPL 234
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 54 EEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA 96
+EP + +SV ++ L + +EN+ N ++L Q+ P + S + A
Sbjct: 66 QEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVA 108
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L S S D + LWD+ +A + KS+ + F E EDV
Sbjct: 765 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L S S D + LWD+ +A + KS+ + F E EDV
Sbjct: 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,111,888
Number of Sequences: 62578
Number of extensions: 425828
Number of successful extensions: 960
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 129
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)