Query 020480
Match_columns 325
No_of_seqs 367 out of 2869
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:43:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0264 Nucleosome remodeling 100.0 3.1E-50 6.7E-55 337.3 26.6 302 3-305 2-307 (422)
2 KOG0302 Ribosome Assembly prot 100.0 1.3E-33 2.9E-38 232.3 20.6 267 28-303 56-380 (440)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-31 8.2E-36 220.6 11.6 221 14-299 236-458 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 6.1E-30 1.3E-34 213.5 16.8 209 34-305 168-379 (459)
5 KOG0271 Notchless-like WD40 re 100.0 5.8E-29 1.2E-33 205.4 17.7 267 16-299 134-479 (480)
6 KOG0263 Transcription initiati 100.0 6.6E-29 1.4E-33 221.8 17.7 220 21-306 433-654 (707)
7 KOG0271 Notchless-like WD40 re 100.0 2E-28 4.4E-33 202.2 15.7 161 122-302 112-277 (480)
8 KOG0263 Transcription initiati 100.0 5.1E-28 1.1E-32 216.2 18.5 164 117-302 443-608 (707)
9 KOG0286 G-protein beta subunit 100.0 1.3E-26 2.9E-31 185.4 23.4 181 124-320 96-287 (343)
10 KOG0277 Peroxisomal targeting 100.0 5.8E-27 1.3E-31 184.0 19.9 211 42-304 9-224 (311)
11 KOG0284 Polyadenylation factor 100.0 6.8E-28 1.5E-32 200.5 11.1 224 40-301 95-337 (464)
12 KOG0277 Peroxisomal targeting 99.9 1.3E-26 2.9E-31 182.0 15.8 167 117-301 96-265 (311)
13 KOG0286 G-protein beta subunit 99.9 6.4E-26 1.4E-30 181.5 19.6 158 121-300 141-302 (343)
14 KOG0645 WD40 repeat protein [G 99.9 7.1E-26 1.5E-30 179.4 19.4 218 31-301 6-225 (312)
15 KOG0273 Beta-transducin family 99.9 2.2E-25 4.9E-30 188.6 19.3 254 16-301 254-523 (524)
16 KOG0273 Beta-transducin family 99.9 3.2E-25 6.8E-30 187.8 19.1 206 43-302 237-483 (524)
17 KOG0279 G protein beta subunit 99.9 4.9E-25 1.1E-29 175.3 18.5 163 120-304 58-225 (315)
18 KOG0281 Beta-TrCP (transducin 99.9 6.8E-27 1.5E-31 191.2 7.9 220 14-304 212-431 (499)
19 KOG0315 G-protein beta subunit 99.9 3.4E-25 7.4E-30 173.6 16.3 232 14-304 15-291 (311)
20 KOG0276 Vesicle coat complex C 99.9 1.7E-25 3.6E-30 195.4 14.7 227 14-304 30-260 (794)
21 KOG0270 WD40 repeat-containing 99.9 1.7E-25 3.7E-30 188.2 13.8 251 17-302 150-405 (463)
22 KOG0264 Nucleosome remodeling 99.9 3.6E-24 7.9E-29 180.7 20.5 179 120-307 172-353 (422)
23 KOG0319 WD40-repeat-containing 99.9 6.6E-25 1.4E-29 194.9 16.6 227 14-299 382-617 (775)
24 KOG0313 Microtubule binding pr 99.9 3.2E-24 7E-29 177.2 19.2 249 15-301 165-418 (423)
25 KOG0285 Pleiotropic regulator 99.9 5.2E-25 1.1E-29 180.7 14.3 165 116-302 141-308 (460)
26 KOG0284 Polyadenylation factor 99.9 2.3E-25 5E-30 185.5 11.1 222 14-300 155-379 (464)
27 KOG0279 G protein beta subunit 99.9 6.6E-24 1.4E-28 169.0 16.9 173 104-301 85-262 (315)
28 KOG0265 U5 snRNP-specific prot 99.9 1.1E-23 2.3E-28 169.3 17.8 173 120-309 42-254 (338)
29 KOG0266 WD40 repeat-containing 99.9 3.6E-23 7.9E-28 187.6 22.4 162 122-302 200-365 (456)
30 PTZ00421 coronin; Provisional 99.9 1.1E-22 2.5E-27 184.2 22.5 171 121-304 71-248 (493)
31 KOG0285 Pleiotropic regulator 99.9 6E-23 1.3E-27 168.7 18.6 202 31-299 143-346 (460)
32 KOG0295 WD40 repeat-containing 99.9 6.8E-24 1.5E-28 174.5 13.0 223 17-303 128-366 (406)
33 KOG0313 Microtubule binding pr 99.9 1.3E-23 2.8E-28 173.7 14.4 241 14-304 120-379 (423)
34 KOG0295 WD40 repeat-containing 99.9 1.4E-22 3.1E-27 166.8 20.1 219 17-300 170-405 (406)
35 KOG0772 Uncharacterized conser 99.9 2.6E-23 5.6E-28 178.1 15.1 197 117-315 159-418 (641)
36 KOG0645 WD40 repeat protein [G 99.9 1.8E-22 3.8E-27 160.3 18.3 172 117-301 6-180 (312)
37 KOG0291 WD40-repeat-containing 99.9 3.4E-22 7.5E-27 178.2 21.9 182 120-323 345-535 (893)
38 KOG0283 WD40 repeat-containing 99.9 2.7E-23 5.8E-28 187.5 14.6 167 123-303 265-483 (712)
39 KOG0266 WD40 repeat-containing 99.9 2.9E-22 6.2E-27 181.8 21.5 223 17-302 179-410 (456)
40 KOG0315 G-protein beta subunit 99.9 3.1E-22 6.7E-27 157.1 16.5 167 118-303 32-247 (311)
41 KOG0310 Conserved WD40 repeat- 99.9 3.6E-22 7.9E-27 170.0 17.4 183 121-323 106-294 (487)
42 KOG0316 Conserved WD40 repeat- 99.9 2.7E-22 5.9E-27 156.3 15.0 178 118-315 10-192 (307)
43 PTZ00420 coronin; Provisional 99.9 1.6E-21 3.5E-26 177.7 22.4 171 119-302 68-249 (568)
44 PTZ00421 coronin; Provisional 99.9 5.7E-21 1.2E-25 173.1 25.3 212 35-302 71-291 (493)
45 KOG0282 mRNA splicing factor [ 99.9 1.9E-23 4.2E-28 177.5 8.3 169 114-302 203-373 (503)
46 KOG0319 WD40-repeat-containing 99.9 1.1E-22 2.4E-27 180.9 12.8 168 120-303 406-579 (775)
47 KOG0292 Vesicle coat complex C 99.9 8.3E-22 1.8E-26 178.5 17.9 230 15-302 27-281 (1202)
48 KOG0276 Vesicle coat complex C 99.9 3.8E-21 8.2E-26 168.4 20.3 196 44-302 16-216 (794)
49 PTZ00420 coronin; Provisional 99.9 1.3E-20 2.8E-25 171.9 23.8 228 18-301 53-293 (568)
50 KOG0269 WD40 repeat-containing 99.9 1.1E-21 2.3E-26 175.5 14.7 165 121-303 129-298 (839)
51 KOG0302 Ribosome Assembly prot 99.9 4.3E-21 9.3E-26 158.8 16.9 167 121-299 253-437 (440)
52 KOG0640 mRNA cleavage stimulat 99.9 1.3E-21 2.7E-26 158.3 13.3 165 120-301 167-335 (430)
53 KOG0306 WD40-repeat-containing 99.9 3.5E-21 7.5E-26 171.8 17.1 229 18-300 433-663 (888)
54 PLN00181 protein SPA1-RELATED; 99.9 1.3E-20 2.8E-25 182.8 22.4 225 17-300 553-792 (793)
55 KOG0292 Vesicle coat complex C 99.9 3.3E-21 7.2E-26 174.7 16.8 164 120-302 46-237 (1202)
56 KOG0293 WD40 repeat-containing 99.9 1.6E-20 3.6E-25 157.0 19.3 172 115-301 258-513 (519)
57 KOG0290 Conserved WD40 repeat- 99.9 2.4E-20 5.3E-25 149.6 19.3 228 35-305 38-322 (364)
58 KOG0281 Beta-TrCP (transducin 99.9 1.2E-21 2.5E-26 160.7 11.8 156 120-300 232-387 (499)
59 PLN00181 protein SPA1-RELATED; 99.9 5.7E-20 1.2E-24 178.3 25.7 162 122-302 529-691 (793)
60 KOG0278 Serine/threonine kinas 99.9 5.2E-21 1.1E-25 150.4 13.9 216 18-302 80-298 (334)
61 KOG0275 Conserved WD40 repeat- 99.9 2.7E-22 5.8E-27 163.1 6.9 169 121-303 209-380 (508)
62 KOG0282 mRNA splicing factor [ 99.9 1.6E-21 3.4E-26 166.0 11.6 223 17-299 235-503 (503)
63 KOG0305 Anaphase promoting com 99.9 4.6E-21 9.9E-26 168.7 14.4 220 19-300 197-460 (484)
64 cd00200 WD40 WD40 domain, foun 99.9 7.1E-20 1.5E-24 155.4 20.7 216 18-299 72-289 (289)
65 KOG0640 mRNA cleavage stimulat 99.9 6E-21 1.3E-25 154.4 12.9 180 114-300 101-290 (430)
66 KOG0269 WD40 repeat-containing 99.9 2.2E-21 4.8E-26 173.5 11.4 175 126-315 88-272 (839)
67 KOG0641 WD40 repeat protein [G 99.9 5.8E-19 1.3E-23 137.1 23.2 185 114-312 78-315 (350)
68 cd00200 WD40 WD40 domain, foun 99.9 1E-18 2.2E-23 148.2 26.0 203 34-302 4-208 (289)
69 KOG0265 U5 snRNP-specific prot 99.8 2.1E-19 4.5E-24 144.8 19.1 249 33-308 41-305 (338)
70 KOG0318 WD40 repeat stress pro 99.8 1.6E-19 3.5E-24 155.3 19.7 164 121-302 143-351 (603)
71 KOG0316 Conserved WD40 repeat- 99.8 3.7E-20 8E-25 144.5 14.0 218 17-302 37-258 (307)
72 KOG0318 WD40 repeat stress pro 99.8 2.7E-19 5.9E-24 153.9 20.0 173 113-300 177-391 (603)
73 KOG0772 Uncharacterized conser 99.8 2E-20 4.3E-25 160.5 12.9 154 121-287 264-423 (641)
74 KOG0267 Microtubule severing p 99.8 3.5E-21 7.7E-26 171.0 8.3 162 121-304 66-229 (825)
75 KOG0291 WD40-repeat-containing 99.8 3E-19 6.5E-24 159.6 20.1 197 44-304 353-553 (893)
76 KOG0305 Anaphase promoting com 99.8 1.2E-19 2.7E-24 159.7 17.3 172 105-300 198-375 (484)
77 KOG1407 WD40 repeat protein [F 99.8 1.4E-19 2.9E-24 143.3 15.6 181 120-317 15-242 (313)
78 KOG0310 Conserved WD40 repeat- 99.8 4.2E-20 9.2E-25 157.5 13.6 160 122-301 65-225 (487)
79 KOG0289 mRNA splicing factor [ 99.8 2.4E-19 5.3E-24 150.9 17.7 215 19-299 241-460 (506)
80 KOG0300 WD40 repeat-containing 99.8 3.2E-20 7E-25 150.7 12.0 185 109-305 175-390 (481)
81 KOG0643 Translation initiation 99.8 9.3E-20 2E-24 144.6 14.2 170 120-304 5-223 (327)
82 KOG0643 Translation initiation 99.8 2.3E-20 5E-25 148.1 10.5 234 14-298 69-314 (327)
83 KOG1332 Vesicle coat complex C 99.8 2E-19 4.3E-24 141.1 14.5 173 116-301 47-241 (299)
84 KOG0300 WD40 repeat-containing 99.8 1.8E-19 4E-24 146.3 13.9 247 16-301 167-428 (481)
85 KOG0274 Cdc4 and related F-box 99.8 2.6E-19 5.6E-24 162.8 16.1 218 14-302 223-442 (537)
86 KOG0296 Angio-associated migra 99.8 7.9E-19 1.7E-23 144.9 17.3 164 118-303 57-222 (399)
87 KOG0289 mRNA splicing factor [ 99.8 3.4E-19 7.4E-24 150.0 15.2 162 121-304 257-422 (506)
88 KOG0306 WD40-repeat-containing 99.8 2E-19 4.3E-24 160.7 14.4 242 17-319 392-645 (888)
89 KOG0646 WD40 repeat protein [G 99.8 2.3E-18 4.9E-23 146.3 20.1 242 19-314 61-327 (476)
90 KOG4328 WD40 protein [Function 99.8 8.5E-19 1.8E-23 148.6 17.1 190 119-322 228-420 (498)
91 KOG1407 WD40 repeat protein [F 99.8 3.3E-18 7.2E-23 135.5 19.3 200 42-297 21-257 (313)
92 KOG0296 Angio-associated migra 99.8 3.1E-18 6.7E-23 141.4 19.5 198 34-297 59-259 (399)
93 KOG4283 Transcription-coupled 99.8 6.7E-19 1.4E-23 141.7 15.2 174 121-304 39-222 (397)
94 KOG0274 Cdc4 and related F-box 99.8 9.4E-19 2E-23 159.2 17.9 169 109-303 233-402 (537)
95 KOG0973 Histone transcription 99.8 3.3E-18 7.2E-23 158.7 21.3 241 17-300 47-354 (942)
96 KOG0647 mRNA export protein (c 99.8 2E-18 4.4E-23 139.3 17.0 152 120-287 67-307 (347)
97 KOG0973 Histone transcription 99.8 9.2E-19 2E-23 162.3 16.3 172 124-301 12-201 (942)
98 KOG0283 WD40 repeat-containing 99.8 3.6E-18 7.8E-23 154.7 18.4 163 121-308 365-541 (712)
99 KOG0275 Conserved WD40 repeat- 99.8 4.7E-19 1E-23 144.3 11.0 155 122-298 260-420 (508)
100 KOG1332 Vesicle coat complex C 99.8 9.3E-19 2E-23 137.3 12.0 171 123-305 9-197 (299)
101 KOG0301 Phospholipase A2-activ 99.8 7.6E-19 1.7E-23 155.7 12.7 218 14-302 30-250 (745)
102 KOG0308 Conserved WD40 repeat- 99.8 2.9E-18 6.3E-23 151.1 16.2 172 121-303 113-287 (735)
103 KOG4283 Transcription-coupled 99.8 4.8E-18 1E-22 136.8 15.7 162 122-300 98-275 (397)
104 KOG0294 WD40 repeat-containing 99.8 1.1E-17 2.5E-22 135.7 17.8 176 117-308 75-288 (362)
105 KOG0647 mRNA export protein (c 99.8 5.7E-18 1.2E-22 136.7 15.3 157 124-300 26-183 (347)
106 KOG0303 Actin-binding protein 99.8 5.6E-18 1.2E-22 141.3 14.4 169 121-303 77-251 (472)
107 KOG0268 Sof1-like rRNA process 99.8 1.8E-18 3.8E-23 142.8 11.2 248 14-302 84-346 (433)
108 KOG0308 Conserved WD40 repeat- 99.8 3.9E-18 8.5E-23 150.3 12.1 168 122-304 70-246 (735)
109 KOG0307 Vesicle coat complex C 99.8 3E-18 6.4E-23 159.8 11.8 173 121-309 112-294 (1049)
110 KOG1007 WD repeat protein TSSC 99.8 4E-17 8.8E-22 131.1 16.4 169 116-302 112-290 (370)
111 KOG0294 WD40 repeat-containing 99.8 1.1E-16 2.4E-21 130.0 19.0 155 121-299 39-195 (362)
112 KOG0641 WD40 repeat protein [G 99.8 5.8E-16 1.2E-20 120.6 21.5 160 121-300 179-348 (350)
113 KOG0290 Conserved WD40 repeat- 99.8 4.5E-17 9.7E-22 131.0 15.8 210 38-285 93-347 (364)
114 KOG0293 WD40 repeat-containing 99.8 8.9E-18 1.9E-22 140.8 12.0 197 18-260 290-515 (519)
115 KOG0268 Sof1-like rRNA process 99.8 1.5E-17 3.3E-22 137.3 13.0 169 120-301 104-302 (433)
116 KOG0288 WD40 repeat protein Ti 99.8 1.2E-17 2.7E-22 139.9 12.3 216 14-299 236-459 (459)
117 KOG1273 WD40 repeat protein [G 99.8 4.3E-17 9.3E-22 132.5 15.0 166 120-302 19-227 (405)
118 KOG0270 WD40 repeat-containing 99.7 1.4E-17 3.1E-22 140.7 12.5 168 127-303 175-362 (463)
119 KOG0267 Microtubule severing p 99.7 3.1E-18 6.7E-23 152.6 7.7 159 121-301 24-184 (825)
120 KOG0639 Transducin-like enhanc 99.7 3E-17 6.5E-22 140.9 12.0 183 119-319 413-601 (705)
121 KOG0301 Phospholipase A2-activ 99.7 7.7E-17 1.7E-21 143.1 14.7 152 121-301 136-288 (745)
122 KOG4378 Nuclear protein COP1 [ 99.7 2.8E-16 6.1E-21 134.8 16.7 206 17-285 99-305 (673)
123 KOG0299 U3 snoRNP-associated p 99.7 8.8E-17 1.9E-21 136.5 13.3 156 123-301 200-356 (479)
124 KOG1007 WD repeat protein TSSC 99.7 4.7E-16 1E-20 125.1 16.4 163 123-300 168-360 (370)
125 KOG1036 Mitotic spindle checkp 99.7 1.5E-15 3.1E-20 123.3 19.1 161 118-302 47-263 (323)
126 KOG2445 Nuclear pore complex c 99.7 4.4E-15 9.5E-20 120.5 21.8 188 114-303 47-320 (361)
127 KOG1445 Tumor-specific antigen 99.7 1.2E-16 2.5E-21 140.9 12.6 152 124-287 626-778 (1012)
128 KOG1446 Histone H3 (Lys4) meth 99.7 3.1E-15 6.8E-20 121.8 19.2 222 17-302 34-263 (311)
129 KOG1446 Histone H3 (Lys4) meth 99.7 3E-15 6.6E-20 121.9 18.4 157 124-304 13-173 (311)
130 KOG0307 Vesicle coat complex C 99.7 1.6E-16 3.4E-21 148.5 12.4 230 16-304 87-330 (1049)
131 KOG2445 Nuclear pore complex c 99.7 3.6E-15 7.8E-20 121.0 17.2 131 122-259 10-145 (361)
132 KOG1036 Mitotic spindle checkp 99.7 2.1E-15 4.5E-20 122.4 15.9 174 124-323 12-192 (323)
133 KOG0639 Transducin-like enhanc 99.7 1.1E-16 2.3E-21 137.5 8.6 152 126-301 510-663 (705)
134 KOG4328 WD40 protein [Function 99.7 7.1E-16 1.5E-20 131.0 13.4 172 123-307 184-359 (498)
135 KOG2919 Guanine nucleotide-bin 99.7 1.1E-15 2.5E-20 124.7 13.8 215 16-287 130-354 (406)
136 KOG0321 WD40 repeat-containing 99.7 9.7E-16 2.1E-20 135.1 13.8 255 16-302 119-392 (720)
137 KOG0278 Serine/threonine kinas 99.7 8.9E-17 1.9E-21 126.7 6.4 178 120-320 54-236 (334)
138 KOG1274 WD40 repeat protein [G 99.7 6E-15 1.3E-19 135.1 19.0 164 124-303 95-264 (933)
139 KOG1034 Transcriptional repres 99.7 2.6E-15 5.7E-20 122.8 14.6 179 122-317 35-244 (385)
140 KOG0303 Actin-binding protein 99.7 9.3E-16 2E-20 128.2 11.9 126 173-302 76-204 (472)
141 KOG0288 WD40 repeat protein Ti 99.7 3.1E-16 6.6E-21 131.6 8.6 168 123-316 217-386 (459)
142 KOG4378 Nuclear protein COP1 [ 99.7 2.2E-15 4.7E-20 129.4 13.6 239 18-315 11-259 (673)
143 KOG0321 WD40 repeat-containing 99.7 1.6E-15 3.5E-20 133.7 13.0 176 118-303 93-303 (720)
144 KOG1009 Chromatin assembly com 99.6 3.8E-15 8.1E-20 125.0 13.6 178 42-261 14-198 (434)
145 KOG1523 Actin-related protein 99.6 8.8E-15 1.9E-19 119.4 15.3 165 124-302 9-177 (361)
146 KOG0646 WD40 repeat protein [G 99.6 7.7E-15 1.7E-19 125.1 15.6 164 120-299 76-245 (476)
147 KOG1188 WD40 repeat protein [G 99.6 3.2E-15 7E-20 122.8 12.6 166 122-300 67-241 (376)
148 KOG2096 WD40 repeat protein [G 99.6 7.1E-15 1.5E-19 119.9 14.5 173 120-302 81-309 (420)
149 KOG1408 WD40 repeat protein [F 99.6 5.9E-15 1.3E-19 131.9 15.2 162 121-302 497-714 (1080)
150 KOG0299 U3 snoRNP-associated p 99.6 3.2E-15 7E-20 127.2 12.8 171 118-300 135-315 (479)
151 PF12265 CAF1C_H4-bd: Histone- 99.6 8.2E-17 1.8E-21 106.8 2.5 71 18-88 1-72 (74)
152 KOG2048 WD40 repeat protein [G 99.6 4.1E-14 8.8E-19 125.8 18.8 158 123-301 67-233 (691)
153 KOG1034 Transcriptional repres 99.6 1.8E-14 3.8E-19 118.0 14.9 160 124-300 88-278 (385)
154 KOG1063 RNA polymerase II elon 99.6 1.3E-14 2.7E-19 129.3 14.9 164 120-299 520-697 (764)
155 KOG2394 WD40 protein DMR-N9 [G 99.6 1E-14 2.3E-19 126.4 13.9 148 125-283 219-384 (636)
156 KOG2919 Guanine nucleotide-bin 99.6 2.2E-14 4.7E-19 117.3 14.7 182 105-304 134-330 (406)
157 KOG1009 Chromatin assembly com 99.6 1.4E-14 3.1E-19 121.6 13.8 164 124-293 12-187 (434)
158 KOG1310 WD40 repeat protein [G 99.6 7.9E-15 1.7E-19 127.5 11.5 178 121-309 46-239 (758)
159 KOG1523 Actin-related protein 99.6 7.1E-14 1.5E-18 114.2 16.2 211 38-299 7-234 (361)
160 KOG2055 WD40 repeat protein [G 99.6 3.6E-14 7.8E-19 120.9 15.1 169 120-301 339-512 (514)
161 KOG2096 WD40 repeat protein [G 99.6 2.3E-13 5E-18 111.2 19.0 123 123-259 185-309 (420)
162 KOG1445 Tumor-specific antigen 99.6 9.5E-15 2.1E-19 129.0 11.3 149 144-301 599-750 (1012)
163 KOG0642 Cell-cycle nuclear pro 99.6 4.9E-14 1.1E-18 122.9 15.3 180 117-302 336-562 (577)
164 KOG2048 WD40 repeat protein [G 99.6 2.4E-14 5.2E-19 127.2 13.3 263 18-302 46-320 (691)
165 KOG1188 WD40 repeat protein [G 99.6 4.3E-14 9.4E-19 116.3 12.7 147 139-302 41-197 (376)
166 KOG0649 WD40 repeat protein [G 99.6 7.1E-14 1.5E-18 110.1 11.8 168 127-303 12-188 (325)
167 KOG1539 WD repeat protein [Gen 99.5 1.7E-13 3.7E-18 124.5 15.8 156 121-300 489-647 (910)
168 KOG1408 WD40 repeat protein [F 99.5 2.6E-14 5.7E-19 127.8 10.4 162 122-300 456-670 (1080)
169 KOG0771 Prolactin regulatory e 99.5 1.1E-13 2.3E-18 116.9 13.3 155 129-299 148-352 (398)
170 KOG1587 Cytoplasmic dynein int 99.5 2.2E-13 4.7E-18 123.7 16.0 189 108-304 226-475 (555)
171 KOG2106 Uncharacterized conser 99.5 2.8E-13 6E-18 116.8 15.7 223 18-300 389-625 (626)
172 KOG0649 WD40 repeat protein [G 99.5 1.2E-12 2.7E-17 103.2 17.8 178 113-303 50-237 (325)
173 KOG1587 Cytoplasmic dynein int 99.5 8.7E-13 1.9E-17 119.8 18.9 249 16-301 262-516 (555)
174 KOG1274 WD40 repeat protein [G 99.5 1.1E-12 2.3E-17 120.6 19.2 151 120-286 133-283 (933)
175 KOG2106 Uncharacterized conser 99.5 6.4E-12 1.4E-16 108.6 21.7 182 109-309 272-485 (626)
176 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 2.7E-12 5.8E-17 110.5 19.8 160 121-302 110-280 (300)
177 KOG0322 G-protein beta subunit 99.5 2.4E-13 5.3E-18 108.3 11.7 170 124-300 149-322 (323)
178 KOG1524 WD40 repeat-containing 99.5 2.2E-13 4.7E-18 118.4 12.0 152 111-287 82-241 (737)
179 KOG1539 WD repeat protein [Gen 99.5 4.2E-13 9E-18 122.0 14.1 169 126-317 449-628 (910)
180 KOG1063 RNA polymerase II elon 99.5 1.7E-12 3.7E-17 115.9 17.5 212 42-300 526-762 (764)
181 KOG2055 WD40 repeat protein [G 99.5 6E-12 1.3E-16 107.6 19.1 212 31-303 203-419 (514)
182 KOG2394 WD40 protein DMR-N9 [G 99.5 1E-12 2.3E-17 114.2 14.2 120 124-261 289-455 (636)
183 KOG2110 Uncharacterized conser 99.5 1.6E-11 3.5E-16 102.3 20.5 161 119-304 81-251 (391)
184 KOG0650 WD40 repeat nucleolar 99.5 4.4E-13 9.6E-18 117.8 11.1 221 20-298 498-732 (733)
185 KOG4227 WD40 repeat protein [G 99.5 1.6E-12 3.5E-17 109.0 13.4 170 121-303 52-227 (609)
186 KOG0650 WD40 repeat nucleolar 99.4 7.4E-13 1.6E-17 116.4 10.9 251 14-303 417-682 (733)
187 KOG1409 Uncharacterized conser 99.4 8.9E-12 1.9E-16 103.0 15.0 205 8-259 35-271 (404)
188 PF08662 eIF2A: Eukaryotic tra 99.4 2.2E-11 4.8E-16 97.7 17.0 133 130-287 10-157 (194)
189 PF08662 eIF2A: Eukaryotic tra 99.4 1E-10 2.3E-15 93.8 20.6 116 122-260 56-181 (194)
190 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 6.4E-11 1.4E-15 101.9 20.8 158 122-302 27-188 (300)
191 KOG0644 Uncharacterized conser 99.4 2.4E-13 5.1E-18 123.7 5.0 163 121-306 186-351 (1113)
192 KOG1310 WD40 repeat protein [G 99.4 1.1E-11 2.4E-16 108.3 14.8 144 116-259 84-232 (758)
193 KOG0642 Cell-cycle nuclear pro 99.4 2.6E-12 5.6E-17 112.3 10.8 137 120-261 289-429 (577)
194 KOG2110 Uncharacterized conser 99.4 6.7E-11 1.5E-15 98.7 17.8 120 123-261 127-251 (391)
195 COG2319 FOG: WD40 repeat [Gene 99.4 1.3E-10 2.8E-15 103.9 20.7 164 118-302 148-315 (466)
196 KOG1538 Uncharacterized conser 99.4 1.5E-11 3.3E-16 109.8 13.8 251 18-300 32-292 (1081)
197 KOG0644 Uncharacterized conser 99.4 4.8E-13 1E-17 121.7 4.3 125 171-308 183-307 (1113)
198 KOG1272 WD40-repeat-containing 99.4 2.2E-12 4.8E-17 110.4 7.8 155 123-300 207-361 (545)
199 KOG2321 WD40 repeat protein [G 99.3 5.3E-12 1.2E-16 110.7 9.7 181 114-299 40-300 (703)
200 KOG1517 Guanine nucleotide bin 99.3 3.4E-10 7.4E-15 106.0 21.2 173 126-309 1110-1296(1387)
201 KOG2111 Uncharacterized conser 99.3 1.2E-10 2.6E-15 95.4 16.2 107 139-261 149-259 (346)
202 KOG0280 Uncharacterized conser 99.3 4.3E-11 9.2E-16 97.1 13.3 143 128-286 124-266 (339)
203 KOG1517 Guanine nucleotide bin 99.3 5.6E-11 1.2E-15 111.1 15.8 160 124-300 1207-1380(1387)
204 KOG2111 Uncharacterized conser 99.3 3.9E-10 8.4E-15 92.5 18.6 164 117-302 86-257 (346)
205 KOG1273 WD40 repeat protein [G 99.3 1E-11 2.2E-16 101.5 9.5 94 181-286 26-119 (405)
206 KOG3881 Uncharacterized conser 99.3 5.8E-11 1.3E-15 99.7 13.9 159 125-302 148-321 (412)
207 PRK11028 6-phosphogluconolacto 99.3 6E-10 1.3E-14 97.7 21.2 178 115-300 69-257 (330)
208 KOG2139 WD40 repeat protein [G 99.3 2.9E-10 6.2E-15 94.8 15.4 220 17-287 118-359 (445)
209 KOG0309 Conserved WD40 repeat- 99.3 2.7E-11 5.9E-16 109.3 9.9 199 34-286 60-258 (1081)
210 KOG2139 WD40 repeat protein [G 99.2 4E-10 8.7E-15 94.0 15.5 152 123-287 138-294 (445)
211 KOG1524 WD40 repeat-containing 99.2 6.2E-11 1.3E-15 103.4 10.4 154 139-316 76-237 (737)
212 PRK01742 tolB translocation pr 99.2 1.2E-09 2.6E-14 99.0 18.7 147 127-300 249-400 (429)
213 KOG1538 Uncharacterized conser 99.2 5.1E-10 1.1E-14 100.2 15.3 145 127-286 14-189 (1081)
214 PRK11028 6-phosphogluconolacto 99.2 6.6E-09 1.4E-13 91.1 21.8 175 114-301 23-205 (330)
215 KOG0322 G-protein beta subunit 99.2 7.5E-11 1.6E-15 94.3 7.8 122 121-257 201-322 (323)
216 KOG1240 Protein kinase contain 99.2 1E-09 2.2E-14 104.4 15.8 185 119-310 1042-1238(1431)
217 KOG0974 WD-repeat protein WDR6 99.2 5.5E-10 1.2E-14 104.4 13.3 143 139-304 146-291 (967)
218 KOG3881 Uncharacterized conser 99.2 6.2E-10 1.3E-14 93.7 12.2 140 125-284 202-342 (412)
219 COG2319 FOG: WD40 repeat [Gene 99.1 6E-09 1.3E-13 93.0 18.9 162 120-301 60-229 (466)
220 KOG4227 WD40 repeat protein [G 99.1 3.6E-09 7.7E-14 89.3 15.7 130 120-262 100-229 (609)
221 KOG1334 WD40 repeat protein [G 99.1 3.9E-10 8.5E-15 97.4 9.9 170 121-304 138-315 (559)
222 PRK01742 tolB translocation pr 99.1 8.4E-09 1.8E-13 93.6 18.6 153 122-300 200-360 (429)
223 KOG1272 WD40-repeat-containing 99.1 5.5E-11 1.2E-15 102.0 3.9 162 118-304 163-326 (545)
224 KOG0309 Conserved WD40 repeat- 99.1 1.5E-09 3.4E-14 98.2 11.9 162 125-301 67-232 (1081)
225 PRK03629 tolB translocation pr 99.0 4E-08 8.8E-13 89.0 20.3 139 125-287 242-387 (429)
226 KOG2321 WD40 repeat protein [G 99.0 7.4E-09 1.6E-13 91.4 14.3 140 125-286 175-326 (703)
227 PRK04922 tolB translocation pr 99.0 5E-08 1.1E-12 88.7 20.2 139 124-287 246-392 (433)
228 PRK02889 tolB translocation pr 99.0 4E-08 8.7E-13 89.1 19.1 144 124-287 238-384 (427)
229 PRK05137 tolB translocation pr 99.0 9E-08 2E-12 87.1 20.9 140 123-287 243-390 (435)
230 PRK05137 tolB translocation pr 99.0 3.1E-08 6.7E-13 90.1 17.8 142 122-287 198-347 (435)
231 KOG0974 WD-repeat protein WDR6 99.0 7.3E-09 1.6E-13 97.1 13.3 121 120-261 170-291 (967)
232 KOG0280 Uncharacterized conser 99.0 4E-09 8.6E-14 85.8 10.1 170 113-301 152-325 (339)
233 KOG1963 WD40 repeat protein [G 99.0 3.5E-08 7.5E-13 91.1 17.0 165 123-303 203-377 (792)
234 KOG1354 Serine/threonine prote 99.0 6E-09 1.3E-13 86.6 10.4 190 112-303 71-303 (433)
235 KOG4547 WD40 repeat-containing 99.0 1.2E-08 2.6E-13 90.3 12.8 193 17-260 13-222 (541)
236 PRK04922 tolB translocation pr 99.0 6.8E-08 1.5E-12 87.8 18.0 142 123-287 201-349 (433)
237 PRK03629 tolB translocation pr 98.9 3.4E-07 7.5E-12 83.0 21.9 143 122-287 195-344 (429)
238 KOG4547 WD40 repeat-containing 98.9 9.4E-08 2E-12 84.8 16.8 126 138-284 70-195 (541)
239 PRK02889 tolB translocation pr 98.9 8.5E-08 1.8E-12 87.0 17.2 146 123-287 193-341 (427)
240 KOG0771 Prolactin regulatory e 98.9 3.7E-08 8E-13 83.9 13.3 131 120-259 181-355 (398)
241 KOG1334 WD40 repeat protein [G 98.9 2.5E-08 5.5E-13 86.4 12.0 171 118-300 225-465 (559)
242 TIGR02800 propeller_TolB tol-p 98.9 3.8E-07 8.2E-12 82.7 20.1 143 122-287 186-335 (417)
243 KOG1064 RAVE (regulator of V-A 98.9 1.1E-08 2.5E-13 100.8 9.7 159 117-309 2244-2408(2439)
244 PRK01029 tolB translocation pr 98.8 7.9E-07 1.7E-11 80.5 20.7 149 124-287 229-384 (428)
245 KOG2695 WD40 repeat protein [G 98.8 2.8E-08 6.2E-13 82.7 9.5 146 124-283 251-402 (425)
246 KOG1963 WD40 repeat protein [G 98.8 1.4E-07 3.1E-12 87.2 14.6 155 128-298 163-319 (792)
247 TIGR02800 propeller_TolB tol-p 98.8 9.1E-07 2E-11 80.2 20.0 140 123-287 231-378 (417)
248 PF11768 DUF3312: Protein of u 98.8 8.1E-07 1.8E-11 79.5 18.8 191 109-317 189-402 (545)
249 PRK00178 tolB translocation pr 98.8 1.5E-06 3.2E-11 79.1 21.0 140 125-287 242-387 (430)
250 PRK04792 tolB translocation pr 98.7 2.4E-06 5.1E-11 78.0 20.5 139 126-287 262-406 (448)
251 KOG2695 WD40 repeat protein [G 98.7 6.2E-08 1.3E-12 80.7 8.4 144 143-301 229-376 (425)
252 PF00400 WD40: WD domain, G-be 98.7 7.3E-08 1.6E-12 55.6 6.2 38 218-256 2-39 (39)
253 KOG3914 WD repeat protein WDR4 98.7 3.8E-07 8.2E-12 77.5 12.5 161 127-304 64-226 (390)
254 KOG4532 WD40-like repeat conta 98.7 2E-06 4.3E-11 69.6 15.6 128 140-287 130-264 (344)
255 PRK04792 tolB translocation pr 98.7 1.8E-06 3.9E-11 78.8 17.3 142 123-287 215-363 (448)
256 KOG4497 Uncharacterized conser 98.7 1.4E-07 3.1E-12 78.2 9.0 135 130-287 13-147 (447)
257 KOG4714 Nucleoporin [Nuclear s 98.7 7.6E-08 1.6E-12 77.3 7.1 165 115-301 81-254 (319)
258 PF00400 WD40: WD domain, G-be 98.7 6.5E-08 1.4E-12 55.8 5.0 37 170-207 3-39 (39)
259 KOG1064 RAVE (regulator of V-A 98.6 2.1E-07 4.5E-12 92.3 10.7 156 124-303 2207-2368(2439)
260 KOG3914 WD repeat protein WDR4 98.6 5E-07 1.1E-11 76.8 11.5 126 116-262 98-227 (390)
261 PRK00178 tolB translocation pr 98.6 2.9E-06 6.3E-11 77.2 17.5 143 122-287 195-344 (430)
262 KOG1354 Serine/threonine prote 98.6 2.1E-06 4.6E-11 71.8 14.8 164 123-299 162-357 (433)
263 KOG1409 Uncharacterized conser 98.6 1.8E-06 3.8E-11 72.2 14.2 170 124-304 67-273 (404)
264 KOG4497 Uncharacterized conser 98.6 9.2E-08 2E-12 79.3 6.7 105 125-247 48-152 (447)
265 KOG4532 WD40-like repeat conta 98.6 4.2E-06 9E-11 67.8 15.4 148 128-286 161-315 (344)
266 PRK01029 tolB translocation pr 98.6 1.2E-05 2.6E-10 72.8 20.5 141 126-285 281-426 (428)
267 KOG1240 Protein kinase contain 98.6 6.4E-06 1.4E-10 79.4 19.0 151 124-286 1097-1251(1431)
268 KOG2041 WD40 repeat protein [G 98.6 6.8E-07 1.5E-11 81.4 11.9 153 123-286 12-169 (1189)
269 PF11768 DUF3312: Protein of u 98.6 9.3E-06 2E-10 72.9 18.5 80 118-211 252-331 (545)
270 COG2706 3-carboxymuconate cycl 98.6 2.8E-05 6E-10 65.7 20.2 201 64-302 3-222 (346)
271 PF10282 Lactonase: Lactonase, 98.5 5.1E-05 1.1E-09 66.9 20.8 201 66-301 2-222 (345)
272 PRK04043 tolB translocation pr 98.5 9.8E-05 2.1E-09 66.6 22.6 139 124-287 231-381 (419)
273 PF10282 Lactonase: Lactonase, 98.5 0.00014 3E-09 64.2 22.9 167 126-300 144-321 (345)
274 KOG1645 RING-finger-containing 98.5 6.5E-07 1.4E-11 76.2 7.7 104 169-281 184-289 (463)
275 KOG4714 Nucleoporin [Nuclear s 98.4 2.9E-07 6.3E-12 74.0 4.8 76 179-259 180-255 (319)
276 KOG2315 Predicted translation 98.4 8.6E-05 1.9E-09 66.1 20.3 144 130-300 222-389 (566)
277 PF02239 Cytochrom_D1: Cytochr 98.4 2E-05 4.4E-10 69.7 16.6 127 139-286 6-140 (369)
278 KOG4190 Uncharacterized conser 98.4 1.5E-06 3.3E-11 76.9 9.2 172 116-300 726-905 (1034)
279 PF02239 Cytochrom_D1: Cytochr 98.4 6.2E-05 1.3E-09 66.7 19.2 151 117-287 27-185 (369)
280 COG4946 Uncharacterized protei 98.4 3.3E-05 7.2E-10 67.5 16.7 143 121-287 355-502 (668)
281 KOG1275 PAB-dependent poly(A) 98.4 6.2E-06 1.3E-10 77.2 13.0 150 127-299 179-340 (1118)
282 KOG2315 Predicted translation 98.4 3.3E-05 7.2E-10 68.7 16.6 135 121-283 266-410 (566)
283 KOG1912 WD40 repeat protein [G 98.4 1.2E-05 2.7E-10 74.0 14.0 138 127-286 17-168 (1062)
284 COG5170 CDC55 Serine/threonine 98.3 6.1E-07 1.3E-11 74.0 4.8 188 112-304 72-312 (460)
285 PLN02919 haloacid dehalogenase 98.3 6.1E-05 1.3E-09 75.5 19.0 169 129-302 686-889 (1057)
286 KOG2066 Vacuolar assembly/sort 98.2 7.8E-05 1.7E-09 69.2 15.2 141 137-301 83-233 (846)
287 COG2706 3-carboxymuconate cycl 98.2 0.0015 3.2E-08 55.6 21.4 163 113-287 75-257 (346)
288 PF15492 Nbas_N: Neuroblastoma 98.1 0.00048 1E-08 56.7 16.9 168 129-304 47-262 (282)
289 PRK04043 tolB translocation pr 98.0 0.00085 1.8E-08 60.6 18.2 138 126-287 188-332 (419)
290 KOG1008 Uncharacterized conser 98.0 2.3E-06 4.9E-11 77.2 0.8 164 122-302 99-276 (783)
291 PF04762 IKI3: IKI3 family; I 97.9 0.0012 2.6E-08 65.3 18.7 179 115-306 112-338 (928)
292 PF04762 IKI3: IKI3 family; I 97.9 0.0011 2.5E-08 65.5 18.4 144 124-286 208-361 (928)
293 KOG1912 WD40 repeat protein [G 97.9 0.00023 4.9E-09 66.0 12.4 127 116-258 45-186 (1062)
294 KOG1645 RING-finger-containing 97.9 0.00015 3.4E-09 62.1 10.5 80 123-213 191-270 (463)
295 KOG2066 Vacuolar assembly/sort 97.9 0.00021 4.5E-09 66.5 12.0 145 124-300 38-186 (846)
296 PLN02919 haloacid dehalogenase 97.8 0.0019 4E-08 65.1 18.8 156 128-301 626-833 (1057)
297 COG5170 CDC55 Serine/threonine 97.8 6.1E-05 1.3E-09 62.5 6.9 138 122-272 169-321 (460)
298 KOG1832 HIV-1 Vpr-binding prot 97.8 2E-05 4.3E-10 73.8 4.4 154 123-303 1099-1257(1516)
299 KOG4190 Uncharacterized conser 97.8 4.6E-05 9.9E-10 67.9 5.5 134 170-308 727-866 (1034)
300 KOG3621 WD40 repeat-containing 97.8 0.00046 9.9E-09 63.4 11.9 147 124-283 32-180 (726)
301 KOG1008 Uncharacterized conser 97.7 1.6E-05 3.5E-10 71.9 2.0 160 125-299 56-223 (783)
302 COG5354 Uncharacterized protei 97.7 0.019 4.1E-07 51.2 20.4 148 129-302 226-396 (561)
303 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0056 1.2E-07 43.5 14.1 102 128-253 2-109 (111)
304 KOG4640 Anaphase-promoting com 97.7 0.00026 5.7E-09 64.2 8.8 103 116-237 11-115 (665)
305 smart00320 WD40 WD40 repeats. 97.5 0.00025 5.3E-09 39.4 4.8 37 170-207 4-40 (40)
306 KOG4640 Anaphase-promoting com 97.5 0.00061 1.3E-08 61.9 9.1 94 178-283 20-115 (665)
307 COG4946 Uncharacterized protei 97.5 0.012 2.5E-07 52.2 16.4 142 133-300 327-476 (668)
308 COG5354 Uncharacterized protei 97.5 0.011 2.3E-07 52.7 15.8 131 123-287 272-413 (561)
309 smart00320 WD40 WD40 repeats. 97.4 0.00036 7.9E-09 38.7 4.8 37 219-256 4-40 (40)
310 PF08450 SGL: SMP-30/Gluconola 97.4 0.018 4E-07 48.1 17.0 152 113-282 69-233 (246)
311 KOG0882 Cyclophilin-related pe 97.4 0.00047 1E-08 60.1 7.0 175 121-312 5-184 (558)
312 KOG2041 WD40 repeat protein [G 97.4 0.00069 1.5E-08 62.5 8.1 117 178-297 14-141 (1189)
313 COG0823 TolB Periplasmic compo 97.3 0.0094 2E-07 53.8 14.5 144 124-287 236-383 (425)
314 PF15492 Nbas_N: Neuroblastoma 97.3 0.033 7.2E-07 46.2 16.2 145 131-287 3-161 (282)
315 KOG2114 Vacuolar assembly/sort 97.3 0.0064 1.4E-07 57.4 13.2 142 132-286 30-184 (933)
316 KOG2314 Translation initiation 97.3 0.0034 7.4E-08 56.4 10.8 134 128-287 213-360 (698)
317 KOG1275 PAB-dependent poly(A) 97.3 0.0018 3.9E-08 61.4 9.3 108 139-268 148-264 (1118)
318 KOG2314 Translation initiation 97.2 0.021 4.5E-07 51.6 14.9 120 149-287 426-551 (698)
319 KOG3617 WD40 and TPR repeat-co 97.2 0.0013 2.8E-08 61.9 7.3 110 129-259 19-132 (1416)
320 KOG3621 WD40 repeat-containing 97.1 0.0039 8.5E-08 57.5 9.8 114 180-300 35-153 (726)
321 KOG3617 WD40 and TPR repeat-co 97.1 0.0028 6.1E-08 59.8 9.0 71 126-209 60-131 (1416)
322 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0023 4.9E-08 38.1 5.4 36 121-157 7-42 (47)
323 PF08450 SGL: SMP-30/Gluconola 97.1 0.084 1.8E-06 44.1 16.9 131 130-286 4-146 (246)
324 PF08553 VID27: VID27 cytoplas 97.0 0.02 4.4E-07 55.1 13.8 138 146-299 502-645 (794)
325 KOG1920 IkappaB kinase complex 97.0 0.053 1.1E-06 53.5 16.3 116 129-261 199-325 (1265)
326 COG0823 TolB Periplasmic compo 96.8 0.017 3.6E-07 52.3 11.3 142 126-287 193-339 (425)
327 KOG1920 IkappaB kinase complex 96.8 0.071 1.5E-06 52.6 15.9 172 124-305 108-326 (1265)
328 KOG0882 Cyclophilin-related pe 96.8 0.018 3.8E-07 50.7 10.8 164 122-300 50-230 (558)
329 TIGR02658 TTQ_MADH_Hv methylam 96.6 0.089 1.9E-06 46.2 14.0 121 132-269 200-338 (352)
330 KOG1832 HIV-1 Vpr-binding prot 96.6 0.004 8.8E-08 59.1 5.6 106 168-286 1091-1197(1516)
331 KOG2114 Vacuolar assembly/sort 96.5 0.14 2.9E-06 49.0 14.9 165 124-300 63-242 (933)
332 TIGR02658 TTQ_MADH_Hv methylam 96.4 0.22 4.8E-06 43.8 15.2 101 148-269 27-144 (352)
333 PF03178 CPSF_A: CPSF A subuni 96.4 0.37 8E-06 42.0 16.7 126 114-259 77-203 (321)
334 PF07433 DUF1513: Protein of u 96.4 0.26 5.7E-06 42.0 14.6 144 127-287 6-176 (305)
335 KOG2079 Vacuolar assembly/sort 96.2 0.026 5.7E-07 54.9 8.8 101 139-258 100-203 (1206)
336 KOG2444 WD40 repeat protein [G 96.2 0.022 4.7E-07 45.8 6.7 106 139-261 71-180 (238)
337 TIGR03300 assembly_YfgL outer 96.1 0.14 2.9E-06 45.8 12.8 132 139-297 242-375 (377)
338 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.36 7.8E-06 34.5 12.1 82 185-283 9-90 (111)
339 PF08596 Lgl_C: Lethal giant l 96.0 0.1 2.2E-06 46.8 10.9 125 127-258 3-173 (395)
340 PF12894 Apc4_WD40: Anaphase-p 95.9 0.037 8E-07 32.9 5.3 31 178-209 11-41 (47)
341 PF15390 DUF4613: Domain of un 95.8 0.35 7.7E-06 44.5 13.6 127 121-259 52-187 (671)
342 KOG4649 PQQ (pyrrolo-quinoline 95.8 0.77 1.7E-05 38.0 14.2 113 134-270 19-132 (354)
343 PF06977 SdiA-regulated: SdiA- 95.7 1 2.2E-05 37.6 15.7 150 123-285 19-182 (248)
344 PRK02888 nitrous-oxide reducta 95.6 0.4 8.7E-06 45.0 13.5 100 200-302 295-405 (635)
345 PF08553 VID27: VID27 cytoplas 95.6 0.44 9.5E-06 46.3 14.0 101 140-258 544-647 (794)
346 KOG2395 Protein involved in va 95.6 0.23 4.9E-06 45.0 11.2 113 181-302 378-501 (644)
347 COG3391 Uncharacterized conser 95.5 0.94 2E-05 40.6 15.3 141 127-286 75-219 (381)
348 PF04053 Coatomer_WDAD: Coatom 95.4 0.91 2E-05 41.4 14.8 128 123-287 30-158 (443)
349 KOG2395 Protein involved in va 95.0 0.5 1.1E-05 43.0 11.5 120 124-259 374-501 (644)
350 PF10313 DUF2415: Uncharacteri 94.9 0.11 2.3E-06 30.1 4.8 32 229-260 2-35 (43)
351 KOG2079 Vacuolar assembly/sort 94.8 0.083 1.8E-06 51.6 6.8 98 193-300 101-202 (1206)
352 PF00780 CNH: CNH domain; Int 94.8 2 4.4E-05 36.3 14.8 135 139-289 8-154 (275)
353 PRK13616 lipoprotein LpqB; Pro 94.6 1.2 2.5E-05 42.4 13.8 137 126-287 350-510 (591)
354 PF07433 DUF1513: Protein of u 94.6 2.6 5.7E-05 36.1 16.0 104 176-286 160-270 (305)
355 PF10313 DUF2415: Uncharacteri 94.3 0.17 3.7E-06 29.2 4.7 32 126-157 1-34 (43)
356 PF10647 Gmad1: Lipoprotein Lp 94.2 2.9 6.2E-05 35.1 15.8 143 127-287 25-179 (253)
357 TIGR03300 assembly_YfgL outer 94.2 2.3 5.1E-05 37.9 14.4 102 139-262 66-167 (377)
358 TIGR02604 Piru_Ver_Nterm putat 94.0 4.2 9.2E-05 36.2 16.7 147 126-287 14-197 (367)
359 KOG2444 WD40 repeat protein [G 94.0 0.12 2.5E-06 41.7 4.9 105 193-305 72-181 (238)
360 COG3386 Gluconolactonase [Carb 94.0 1.9 4.2E-05 37.3 12.7 101 176-282 160-263 (307)
361 PRK02888 nitrous-oxide reducta 94.0 2.8 6E-05 39.7 14.4 81 177-259 319-405 (635)
362 PF06977 SdiA-regulated: SdiA- 93.9 1.3 2.8E-05 37.0 11.2 153 125-287 64-235 (248)
363 PF12234 Rav1p_C: RAVE protein 93.8 1 2.2E-05 42.7 11.5 113 180-300 31-155 (631)
364 PF08596 Lgl_C: Lethal giant l 93.8 1 2.3E-05 40.4 11.1 115 180-300 3-172 (395)
365 PF13360 PQQ_2: PQQ-like domai 93.7 0.72 1.6E-05 38.0 9.5 110 139-271 37-150 (238)
366 PF15390 DUF4613: Domain of un 93.6 2.8 6.1E-05 39.0 13.4 120 176-300 54-185 (671)
367 PF04053 Coatomer_WDAD: Coatom 93.5 0.93 2E-05 41.4 10.5 130 126-284 69-207 (443)
368 COG3391 Uncharacterized conser 93.1 6.2 0.00013 35.4 16.1 145 127-287 117-266 (381)
369 PF04841 Vps16_N: Vps16, N-ter 93.1 4.8 0.0001 36.5 14.5 48 149-209 62-109 (410)
370 KOG1916 Nuclear protein, conta 92.8 0.066 1.4E-06 51.4 2.1 147 123-285 130-295 (1283)
371 PF14870 PSII_BNR: Photosynthe 92.6 4.9 0.00011 34.7 13.0 155 124-295 143-298 (302)
372 PF13360 PQQ_2: PQQ-like domai 92.6 1.7 3.7E-05 35.7 10.2 98 147-268 2-101 (238)
373 PF10168 Nup88: Nuclear pore c 92.6 11 0.00024 36.8 17.1 83 179-262 85-183 (717)
374 KOG4649 PQQ (pyrrolo-quinoline 92.5 3.4 7.4E-05 34.3 11.1 62 139-211 64-125 (354)
375 PF12234 Rav1p_C: RAVE protein 92.1 7.4 0.00016 37.1 14.5 119 127-259 31-157 (631)
376 COG3386 Gluconolactonase [Carb 92.1 3.8 8.3E-05 35.5 11.8 114 125-249 162-277 (307)
377 PRK11138 outer membrane biogen 91.6 5.1 0.00011 36.0 12.8 131 140-298 258-391 (394)
378 COG3490 Uncharacterized protei 91.5 7.8 0.00017 32.8 13.3 103 122-246 64-179 (366)
379 PF08728 CRT10: CRT10; InterP 91.4 5.3 0.00011 38.5 12.8 129 124-257 99-245 (717)
380 KOG4499 Ca2+-binding protein R 91.3 7.3 0.00016 32.0 11.8 100 129-238 161-264 (310)
381 PF02897 Peptidase_S9_N: Proly 91.2 11 0.00024 34.0 16.7 115 129-260 127-262 (414)
382 PF12657 TFIIIC_delta: Transcr 91.2 3.1 6.8E-05 32.6 9.7 31 180-210 87-122 (173)
383 KOG2377 Uncharacterized conser 91.1 10 0.00023 34.3 13.4 172 130-318 27-203 (657)
384 PF14655 RAB3GAP2_N: Rab3 GTPa 90.9 4.9 0.00011 36.3 11.5 83 173-262 302-402 (415)
385 KOG1916 Nuclear protein, conta 90.7 0.18 3.9E-06 48.6 2.5 125 124-262 179-327 (1283)
386 KOG2247 WD40 repeat-containing 89.6 0.039 8.4E-07 49.3 -2.5 144 129-295 38-182 (615)
387 KOG3630 Nuclear pore complex, 88.9 2.8 6.1E-05 42.0 8.9 105 179-287 101-212 (1405)
388 PHA02713 hypothetical protein; 88.9 2.8 6.1E-05 39.7 9.0 63 241-306 465-538 (557)
389 PRK13616 lipoprotein LpqB; Pro 88.8 19 0.00042 34.4 14.4 103 178-284 447-551 (591)
390 PF10168 Nup88: Nuclear pore c 88.3 25 0.00055 34.4 15.0 87 124-212 83-182 (717)
391 KOG2377 Uncharacterized conser 88.0 14 0.00031 33.5 11.9 125 121-260 62-187 (657)
392 COG3490 Uncharacterized protei 87.0 6 0.00013 33.5 8.5 99 181-287 70-175 (366)
393 PF08728 CRT10: CRT10; InterP 86.9 32 0.00068 33.5 15.8 92 192-285 115-222 (717)
394 KOG4460 Nuclear pore complex, 86.5 27 0.00059 32.4 13.1 29 125-154 103-131 (741)
395 PF07569 Hira: TUP1-like enhan 86.2 4.2 9.1E-05 33.3 7.5 77 180-261 14-98 (219)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 86.2 18 0.00038 32.8 11.8 98 183-285 6-120 (415)
397 KOG4499 Ca2+-binding protein R 85.6 19 0.00041 29.7 11.4 97 182-283 161-263 (310)
398 PF14761 HPS3_N: Hermansky-Pud 85.2 19 0.0004 29.2 11.6 110 140-261 30-166 (215)
399 COG3204 Uncharacterized protei 85.2 23 0.0005 30.2 12.2 125 123-261 83-213 (316)
400 PRK11138 outer membrane biogen 84.9 13 0.00028 33.5 10.7 56 193-257 337-393 (394)
401 KOG3630 Nuclear pore complex, 84.8 2.3 4.9E-05 42.6 5.9 101 125-239 155-255 (1405)
402 TIGR02276 beta_rpt_yvtn 40-res 84.7 4.2 9.1E-05 22.8 5.1 41 237-281 1-41 (42)
403 PF07676 PD40: WD40-like Beta 84.7 5 0.00011 22.3 5.3 30 226-255 7-38 (39)
404 PF03178 CPSF_A: CPSF A subuni 84.3 27 0.00059 30.3 16.6 128 116-255 120-262 (321)
405 KOG4441 Proteins containing BT 84.2 11 0.00024 35.8 10.2 105 139-261 382-502 (571)
406 PF07676 PD40: WD40-like Beta 83.7 5.6 0.00012 22.1 5.2 30 177-206 7-38 (39)
407 PF00930 DPPIV_N: Dipeptidyl p 83.7 31 0.00067 30.5 14.6 148 125-287 183-341 (353)
408 PF12657 TFIIIC_delta: Transcr 83.3 17 0.00038 28.4 9.6 32 126-157 86-122 (173)
409 PF05694 SBP56: 56kDa selenium 83.3 9 0.00019 34.6 8.5 106 147-263 221-347 (461)
410 PHA02713 hypothetical protein; 83.0 28 0.00062 33.0 12.5 62 193-261 466-536 (557)
411 KOG2247 WD40 repeat-containing 82.5 0.3 6.5E-06 44.0 -0.8 111 122-252 71-182 (615)
412 COG3204 Uncharacterized protei 81.8 26 0.00057 29.9 10.2 128 128-260 131-265 (316)
413 PF07569 Hira: TUP1-like enhan 80.8 14 0.0003 30.3 8.3 70 139-211 23-97 (219)
414 KOG4441 Proteins containing BT 80.7 37 0.00081 32.4 12.3 118 124-261 321-455 (571)
415 PF02897 Peptidase_S9_N: Proly 80.1 26 0.00057 31.6 10.9 98 181-287 126-240 (414)
416 COG5167 VID27 Protein involved 79.6 6.9 0.00015 35.9 6.5 60 139-210 574-633 (776)
417 PF00930 DPPIV_N: Dipeptidyl p 79.5 44 0.00095 29.6 18.8 104 130-249 239-349 (353)
418 PF14583 Pectate_lyase22: Olig 79.2 42 0.00091 30.0 11.2 131 132-284 42-198 (386)
419 PF11715 Nup160: Nucleoporin N 77.6 11 0.00023 35.7 7.8 70 193-262 160-252 (547)
420 PF06433 Me-amine-dh_H: Methyl 76.6 16 0.00035 31.9 7.8 59 202-270 270-329 (342)
421 PF10214 Rrn6: RNA polymerase 76.1 79 0.0017 31.5 13.4 123 125-259 145-277 (765)
422 PF10647 Gmad1: Lipoprotein Lp 75.7 47 0.001 27.8 12.3 112 126-248 66-185 (253)
423 PF12768 Rax2: Cortical protei 74.7 54 0.0012 28.1 11.2 94 147-258 15-123 (281)
424 PRK10115 protease 2; Provision 74.7 90 0.0019 30.6 15.3 114 127-257 128-254 (686)
425 PF14870 PSII_BNR: Photosynthe 71.8 66 0.0014 27.8 14.6 114 175-297 141-257 (302)
426 KOG1897 Damage-specific DNA bi 71.7 1.2E+02 0.0026 30.7 13.8 139 128-287 777-927 (1096)
427 PF07995 GSDH: Glucose / Sorbo 71.6 37 0.00079 29.8 9.1 110 128-249 4-134 (331)
428 PHA03098 kelch-like protein; P 71.5 84 0.0018 29.6 12.2 105 139-261 344-467 (534)
429 PF12341 DUF3639: Protein of u 71.3 12 0.00026 19.2 3.6 25 127-154 3-27 (27)
430 PF14781 BBS2_N: Ciliary BBSom 71.3 40 0.00087 25.1 12.5 120 130-261 3-128 (136)
431 KOG1897 Damage-specific DNA bi 70.3 1.3E+02 0.0028 30.5 17.7 125 114-258 818-942 (1096)
432 TIGR02276 beta_rpt_yvtn 40-res 70.3 16 0.00036 20.3 5.0 24 188-211 1-24 (42)
433 PF14727 PHTB1_N: PTHB1 N-term 69.9 87 0.0019 28.5 11.1 116 187-304 33-166 (418)
434 PF14727 PHTB1_N: PTHB1 N-term 69.5 90 0.002 28.5 15.8 119 135-260 34-165 (418)
435 PRK13684 Ycf48-like protein; P 69.2 80 0.0017 27.7 15.9 155 125-298 172-328 (334)
436 TIGR03118 PEPCTERM_chp_1 conse 68.8 77 0.0017 27.4 12.2 127 128-260 25-172 (336)
437 PF14761 HPS3_N: Hermansky-Pud 68.0 65 0.0014 26.2 11.5 107 193-305 30-167 (215)
438 KOG1900 Nuclear pore complex, 68.0 44 0.00095 34.6 9.4 162 17-211 97-274 (1311)
439 PHA03098 kelch-like protein; P 67.5 1E+02 0.0023 29.0 11.9 21 241-261 489-514 (534)
440 PF04841 Vps16_N: Vps16, N-ter 66.4 1E+02 0.0022 28.0 18.0 55 228-286 217-272 (410)
441 PF07995 GSDH: Glucose / Sorbo 65.7 34 0.00074 30.0 7.7 62 180-247 3-71 (331)
442 PF01731 Arylesterase: Arylest 63.1 41 0.00089 22.9 6.0 31 179-209 54-84 (86)
443 PF14779 BBS1: Ciliary BBSome 62.9 70 0.0015 26.9 8.4 71 124-205 175-254 (257)
444 COG5167 VID27 Protein involved 60.7 1.5E+02 0.0032 27.8 11.2 44 241-287 574-617 (776)
445 cd00216 PQQ_DH Dehydrogenases 57.4 1.7E+02 0.0036 27.4 11.0 43 241-287 407-451 (488)
446 COG4590 ABC-type uncharacteriz 56.9 95 0.0021 28.5 8.6 148 125-287 220-371 (733)
447 COG5290 IkappaB kinase complex 55.6 25 0.00055 34.3 5.2 105 129-250 250-359 (1243)
448 PF11715 Nup160: Nucleoporin N 55.1 31 0.00066 32.7 5.9 35 179-213 215-252 (547)
449 TIGR03606 non_repeat_PQQ dehyd 55.0 1.8E+02 0.0038 27.0 15.5 66 116-190 20-90 (454)
450 PF06433 Me-amine-dh_H: Methyl 54.3 85 0.0018 27.6 7.8 53 149-212 270-323 (342)
451 PHA02790 Kelch-like protein; P 54.3 1.6E+02 0.0035 27.4 10.4 102 139-261 320-426 (480)
452 KOG1520 Predicted alkaloid syn 53.3 1.7E+02 0.0036 26.2 9.5 70 247-320 196-269 (376)
453 PF14781 BBS2_N: Ciliary BBSom 52.3 97 0.0021 23.2 11.2 92 184-282 4-101 (136)
454 KOG1900 Nuclear pore complex, 52.3 3.1E+02 0.0067 28.9 13.1 35 225-260 240-274 (1311)
455 PF01731 Arylesterase: Arylest 51.2 76 0.0016 21.6 6.1 31 229-259 55-85 (86)
456 PF12768 Rax2: Cortical protei 50.0 1.3E+02 0.0027 25.8 8.2 72 200-282 15-97 (281)
457 PRK13684 Ycf48-like protein; P 49.7 1.8E+02 0.0039 25.5 11.2 111 178-297 172-284 (334)
458 PHA02790 Kelch-like protein; P 49.6 1.2E+02 0.0027 28.1 8.9 19 139-157 364-385 (480)
459 KOG3522 Predicted guanine nucl 48.6 2.9E+02 0.0063 27.6 10.9 120 125-261 581-700 (925)
460 TIGR03606 non_repeat_PQQ dehyd 47.7 2.3E+02 0.0051 26.2 13.6 59 178-238 29-89 (454)
461 TIGR03118 PEPCTERM_chp_1 conse 47.5 1.9E+02 0.0041 25.1 8.7 79 180-259 24-119 (336)
462 PLN00033 photosystem II stabil 46.3 2.3E+02 0.005 25.7 15.8 111 178-295 280-393 (398)
463 KOG3522 Predicted guanine nucl 45.8 51 0.0011 32.4 5.6 131 140-287 549-682 (925)
464 TIGR02604 Piru_Ver_Nterm putat 45.6 2.2E+02 0.0048 25.3 11.3 102 180-287 15-137 (367)
465 KOG3616 Selective LIM binding 44.8 59 0.0013 31.8 5.7 33 179-212 15-47 (1636)
466 PF10214 Rrn6: RNA polymerase 44.1 3.4E+02 0.0074 27.1 23.7 137 122-262 76-236 (765)
467 PF01436 NHL: NHL repeat; Int 42.7 48 0.001 16.8 3.9 24 181-205 4-27 (28)
468 smart00564 PQQ beta-propeller 42.6 49 0.0011 17.1 3.2 20 242-261 8-27 (33)
469 COG5276 Uncharacterized conser 42.0 2.3E+02 0.005 24.5 19.1 146 120-287 81-227 (370)
470 TIGR03075 PQQ_enz_alc_DH PQQ-d 40.8 3.2E+02 0.007 25.9 12.0 27 241-270 473-499 (527)
471 PF05694 SBP56: 56kDa selenium 40.5 1E+02 0.0023 28.1 6.4 66 179-247 312-393 (461)
472 PF03088 Str_synth: Strictosid 40.4 86 0.0019 21.5 4.7 54 144-208 33-86 (89)
473 KOG3616 Selective LIM binding 38.9 46 0.001 32.4 4.2 33 228-261 15-47 (1636)
474 PF01011 PQQ: PQQ enzyme repea 37.3 73 0.0016 17.4 3.5 25 243-270 3-27 (38)
475 COG5276 Uncharacterized conser 37.2 2.8E+02 0.006 24.1 13.6 76 177-262 85-160 (370)
476 cd00216 PQQ_DH Dehydrogenases 35.2 3.8E+02 0.0082 25.0 10.5 21 193-213 112-132 (488)
477 PF05935 Arylsulfotrans: Aryls 34.3 3.9E+02 0.0084 24.9 11.0 33 229-261 272-304 (477)
478 TIGR03548 mutarot_permut cycli 33.9 3.1E+02 0.0068 23.7 9.3 63 139-211 125-196 (323)
479 PF00780 CNH: CNH domain; Int 33.6 2.8E+02 0.0061 23.1 17.7 125 128-261 38-168 (275)
480 KOG2280 Vacuolar assembly/sort 33.3 4.9E+02 0.011 25.8 14.4 70 127-211 45-114 (829)
481 PF14583 Pectate_lyase22: Olig 33.0 2.1E+02 0.0045 25.8 7.1 87 185-282 42-131 (386)
482 PF08954 DUF1900: Domain of un 32.0 2.2E+02 0.0048 21.3 6.4 59 227-287 10-70 (136)
483 PF13570 PQQ_3: PQQ-like domai 28.7 97 0.0021 17.0 3.0 17 193-209 23-39 (40)
484 PF13449 Phytase-like: Esteras 27.3 4.2E+02 0.0091 23.1 15.5 158 125-287 19-228 (326)
485 PF03088 Str_synth: Strictosid 25.8 2.2E+02 0.0049 19.5 5.6 51 194-251 30-80 (89)
486 KOG2280 Vacuolar assembly/sort 25.8 6.7E+02 0.014 24.9 13.9 30 126-157 84-113 (829)
487 TIGR03074 PQQ_membr_DH membran 25.1 7.1E+02 0.015 25.0 12.7 21 193-213 262-282 (764)
488 PF10584 Proteasome_A_N: Prote 25.1 37 0.0008 16.7 0.7 8 280-287 7-14 (23)
489 TIGR02171 Fb_sc_TIGR02171 Fibr 23.5 8.1E+02 0.017 25.1 10.8 82 148-246 329-417 (912)
490 COG5290 IkappaB kinase complex 22.4 8.1E+02 0.018 24.7 9.6 75 231-307 250-330 (1243)
491 KOG2109 WD40 repeat protein [G 22.3 1.3E+02 0.0029 28.9 4.1 79 169-251 306-391 (788)
492 KOG1898 Splicing factor 3b, su 22.2 9.1E+02 0.02 25.2 13.5 105 184-302 939-1047(1205)
493 COG4257 Vgb Streptogramin lyas 22.0 5.2E+02 0.011 22.3 7.8 96 179-287 62-161 (353)
494 PF05096 Glu_cyclase_2: Glutam 21.7 5E+02 0.011 22.0 15.0 125 115-261 32-160 (264)
495 COG5249 RER1 Golgi protein inv 21.6 39 0.00085 25.2 0.5 26 6-31 87-112 (180)
496 PF14269 Arylsulfotran_2: Aryl 21.2 4.7E+02 0.01 22.6 7.2 71 127-209 145-220 (299)
No 1
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-50 Score=337.31 Aligned_cols=302 Identities=62% Similarity=1.032 Sum_probs=274.1
Q ss_pred chhhhhhhhhhhhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEE
Q 020480 3 KDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLML 82 (325)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 82 (325)
+.|+++++..+.+.++|++++||+|+|+||+.+..|.+.||+++++|.|+........+..+++++|++++++++|+|+|
T Consensus 2 ~~~~~~~~~~~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~i 81 (422)
T KOG0264|consen 2 NAEEAMDEALEQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVI 81 (422)
T ss_pred chHhhccchhccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEE
Confidence 35677788888889999999999999999999999999999999999999777778889999999999999999999999
Q ss_pred EEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC
Q 020480 83 AQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP 162 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~ 162 (325)
+++.+|..+.......++++.+++.++....+++++...+.|.+.|+++++.|++++++|+++..+.|.|||....+...
T Consensus 82 A~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~ 161 (422)
T KOG0264|consen 82 ASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP 161 (422)
T ss_pred EeecCCCcccccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc
Confidence 99999998888888889999999998888888999999999999999999999999999999999999999998876665
Q ss_pred CCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCC-CCcccceEeeecCCccEEEEEeecCCCc
Q 020480 163 PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEY 241 (325)
Q Consensus 163 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 241 (325)
+..+...|-.++.+|....++|+|++.....|++|+.|+.|++||+..... .+.+.+...+.+|+..|..++|+|.+..
T Consensus 162 ~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~ 241 (422)
T KOG0264|consen 162 KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED 241 (422)
T ss_pred cccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh
Confidence 544567788899999999999999999999999999999999999987765 3455678889999999999999999999
Q ss_pred EEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecceeee
Q 020480 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRYLLY 305 (325)
Q Consensus 242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~~~~ 305 (325)
+|++++.|+.+.|||+|+. ..++.....+|.++|+|++|+|.+.. ++|.|+++.+||+|.+..
T Consensus 242 lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred hheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 9999999999999999974 34467888999999999999998773 899999999999988754
No 2
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=232.26 Aligned_cols=267 Identities=25% Similarity=0.409 Sum_probs=203.0
Q ss_pred ChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcc-eEEEEEEecCCCCCCCeEEEEEEE-CCCCCCCcccCCCCcccCC
Q 020480 28 TPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYS-VQKMILGTHTSENEPNYLMLAQVQ-LPLDDSENDARHYDDDRSD 105 (325)
Q Consensus 28 ~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~~~~~~ 105 (325)
.|..|..++..+.+|||++++..|+.....+..|+ ...++.|+|+.....|.|+++.+. +.......+.+..++++.+
T Consensus 56 DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~edd 135 (440)
T KOG0302|consen 56 DPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDD 135 (440)
T ss_pred CHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccc
Confidence 48899999999999999999999999998888888 556889999999999999999884 3322221111111111111
Q ss_pred CCCCCCCCCceEEEEEeccCCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCC------CCCCCCCcEEE----
Q 020480 106 FGGFGCANGKVQIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPP------LDGACSPDLRL---- 174 (325)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~~------~~~~~~~~~~~---- 174 (325)
. .-..|++.. +.++|.+.+++++-++.+ ..+.|+-+..|.|+||++........ .....+|++++
T Consensus 136 e---dD~~P~~~~-~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk 211 (440)
T KOG0302|consen 136 E---DDRKPQIEM-KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK 211 (440)
T ss_pred h---hhccccccc-cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC
Confidence 0 002456554 578899999999999874 45777888999999999876432111 01112222222
Q ss_pred ------------------------------------------ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCC
Q 020480 175 ------------------------------------------RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP 212 (325)
Q Consensus 175 ------------------------------------------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 212 (325)
.+|+..|-+|+|+|...+.|+|||.||+|+|||+|.+.
T Consensus 212 ~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 212 GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred ccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC
Confidence 34666777777777777899999999999999999986
Q ss_pred CCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--c-cC
Q 020480 213 KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--L-SH 289 (325)
Q Consensus 213 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~-~~ 289 (325)
+. +....++|.+.|+.++|+..- .+||+|+.||+++|||+|..+..+|+..++.|+.+|++|.|+|... + .+
T Consensus 292 ~~----~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 292 KK----AAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS 366 (440)
T ss_pred cc----ceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec
Confidence 63 333448999999999999876 4999999999999999998887779999999999999999999654 3 78
Q ss_pred CCCceEEeeeccee
Q 020480 290 EDTCTCTHRHSRYL 303 (325)
Q Consensus 290 ~~d~~~~~~~~~~~ 303 (325)
|.|.++.+||+..-
T Consensus 367 g~D~QitiWDlsvE 380 (440)
T KOG0302|consen 367 GEDNQITIWDLSVE 380 (440)
T ss_pred cCCCcEEEEEeecc
Confidence 89999999998553
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.8e-31 Score=220.65 Aligned_cols=221 Identities=21% Similarity=0.267 Sum_probs=190.1
Q ss_pred hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
+-..|.++|+|+.+......-+..|... +..|+|.|++. .+..+++.. .-.+|++.
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH~~R--Vs~VafHPsG~----------~L~TasfD~-----tWRlWD~~------- 291 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGHLAR--VSRVAFHPSGK----------FLGTASFDS-----TWRLWDLE------- 291 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcchhh--heeeeecCCCc----------eeeeccccc-----chhhcccc-------
Confidence 3346789999999998888899999866 88999999985 455555433 34455443
Q ss_pred cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480 94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR 173 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 173 (325)
.+-++....+|...|.+++|.++| .++++|+.|..-+|||+++ + ..+..
T Consensus 292 --------------------tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRt--------g--r~im~ 340 (459)
T KOG0272|consen 292 --------------------TKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRT--------G--RCIMF 340 (459)
T ss_pred --------------------cchhhHhhcccccccceeEecCCC-ceeeccCccchhheeeccc--------C--cEEEE
Confidence 123444567899999999999999 6999999999999999998 3 44778
Q ss_pred EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (325)
Q Consensus 174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~ 253 (325)
+.+|..+|.+++|+|+|- .++||+.|++++|||++.. ..+.++.+|.+-|+.|+|+|....+|+|++.|++++
T Consensus 341 L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMR------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred ecccccceeeEeECCCce-EEeecCCCCcEEEeeeccc------ccceecccccchhhheEecccCCeEEEEcccCccee
Confidence 999999999999999998 8999999999999999987 457888999999999999996668999999999999
Q ss_pred EEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH 299 (325)
Q Consensus 254 iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~ 299 (325)
||..++.. ++.++.+|.+.|.+++.++++.+ +++.|.++++|.
T Consensus 414 iWs~~~~~---~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 414 IWSTRTWS---PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eecCCCcc---cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999988 59999999999999999999974 899999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.1e-30 Score=213.46 Aligned_cols=209 Identities=19% Similarity=0.225 Sum_probs=176.1
Q ss_pred HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480 34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN 113 (325)
Q Consensus 34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (325)
++++...+=|...+.|+++.. .++.|+..+ ..++|+. | .
T Consensus 168 ~~SQ~gd~rPis~~~fS~ds~----------~laT~swsG-----~~kvW~~--~------------------------~ 206 (459)
T KOG0272|consen 168 VCSQVGDTRPISGCSFSRDSK----------HLATGSWSG-----LVKVWSV--P------------------------Q 206 (459)
T ss_pred hhhhccCCCcceeeEeecCCC----------eEEEeecCC-----ceeEeec--C------------------------C
Confidence 444555555777788887764 466666644 3555544 2 2
Q ss_pred CceEEEEEeccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCC
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG 192 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 192 (325)
. -.+....+|.+.|.++.|+|. ....+|+|+.||+|++|++.. ..++..+.+|...|..++|+|+|.
T Consensus 207 ~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~----------e~~l~~l~gH~~RVs~VafHPsG~- 274 (459)
T KOG0272|consen 207 C-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ----------ETPLQDLEGHLARVSRVAFHPSGK- 274 (459)
T ss_pred c-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC----------CcchhhhhcchhhheeeeecCCCc-
Confidence 2 233456789999999999997 356899999999999999987 477888999999999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 272 (325)
+|+|++.|.+-++||+++.. .+....+|...|.+++|+|+| .+++|||.|..-+|||+|++++ +..+.+|
T Consensus 275 ~L~TasfD~tWRlWD~~tk~------ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~---im~L~gH 344 (459)
T KOG0272|consen 275 FLGTASFDSTWRLWDLETKS------ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRC---IMFLAGH 344 (459)
T ss_pred eeeecccccchhhcccccch------hhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcE---EEEeccc
Confidence 89999999999999999874 355568999999999999998 6999999999999999999996 9999999
Q ss_pred CCCeeEEEeCCCCCc--cCCCCceEEeeecceeee
Q 020480 273 QSEVGVSILNASFRL--SHEDTCTCTHRHSRYLLY 305 (325)
Q Consensus 273 ~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~~ 305 (325)
..+|.+|+|+|+|.. +||.|++|++|++|....
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 999999999999984 999999999999988654
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.8e-29 Score=205.41 Aligned_cols=267 Identities=18% Similarity=0.186 Sum_probs=201.1
Q ss_pred hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCC-------CCCCeEEEEEEECC
Q 020480 16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE-------NEPNYLMLAQVQLP 88 (325)
Q Consensus 16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~i~~~~~~ 88 (325)
.=|.++|+|+.++..-.-+|..|+.= +++++|+|++...+.........++...+.+ ++...|.-+.++ |
T Consensus 134 sGD~TvR~WD~~TeTp~~t~KgH~~W--VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawe-p 210 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTETPLFTCKGHKNW--VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWE-P 210 (480)
T ss_pred CCCceEEeeccCCCCcceeecCCccE--EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeec-c
Confidence 35689999999987766777777754 8899999999877666655555555532221 333445544443 2
Q ss_pred CCCCCc-ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCC--CCCCC--
Q 020480 89 LDDSEN-DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH--PSKPP-- 163 (325)
Q Consensus 89 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~--~~~~~-- 163 (325)
...... ..-.....++.+..|+...+.. .....+|+.+|+|++|-.+| ++++|+.|++|++|+.... ...++
T Consensus 211 ~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGH 287 (480)
T KOG0271|consen 211 LHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGH 287 (480)
T ss_pred cccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhccc
Confidence 211111 1112233445666666655443 34567899999999998766 9999999999999987651 00000
Q ss_pred -----------------------------------------------------------------CCCCCCCcEEEecCC
Q 020480 164 -----------------------------------------------------------------LDGACSPDLRLRGHS 178 (325)
Q Consensus 164 -----------------------------------------------------------------~~~~~~~~~~~~~h~ 178 (325)
+....+++..+.+|.
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq 367 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ 367 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchh
Confidence 112233455667899
Q ss_pred CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (325)
Q Consensus 179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~ 258 (325)
..|..+.|+|++. ++++++.|.+|++||.+++ +.+.+|++|-..|+.++|+.+. ++|++|+.|.++++||++
T Consensus 368 ~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tG------k~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 368 ALVNHVSFSPDGR-YIASASFDKSVKLWDGRTG------KFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred hheeeEEECCCcc-EEEEeecccceeeeeCCCc------chhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEee
Confidence 9999999999999 9999999999999999998 4588899999999999999985 899999999999999999
Q ss_pred CCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480 259 TPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH 299 (325)
Q Consensus 259 ~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~ 299 (325)
+.+. ...+.+|...|.++.|+|+|.. +|+.|..+++|.
T Consensus 440 tkKl---~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 440 TKKL---KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeee---cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9884 7888999999999999999985 888999988884
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=6.6e-29 Score=221.80 Aligned_cols=220 Identities=17% Similarity=0.253 Sum_probs=182.3
Q ss_pred HhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCC
Q 020480 21 YKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYD 100 (325)
Q Consensus 21 ~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 100 (325)
..+-+.+.+..-..+..|..+ ++.+.|+|+.. +++.. +++..+.+|.+.
T Consensus 433 ~~~~D~~~~~~~~~L~GH~GP--Vyg~sFsPd~r-----------fLlSc----SED~svRLWsl~-------------- 481 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSGP--VYGCSFSPDRR-----------FLLSC----SEDSSVRLWSLD-------------- 481 (707)
T ss_pred hhhccccCCceeEEeecCCCc--eeeeeeccccc-----------ceeec----cCCcceeeeecc--------------
Confidence 455555555555556666544 88888888763 22222 233456666653
Q ss_pred cccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc
Q 020480 101 DDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180 (325)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 180 (325)
. .-..+...+|..+|..+.|+|.| .+||+|+.|++.++|.... ..|.+.+.+|.+-
T Consensus 482 ------------t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~----------~~PlRifaghlsD 537 (707)
T KOG0263|consen 482 ------------T-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDH----------NKPLRIFAGHLSD 537 (707)
T ss_pred ------------c-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeeccc----------CCchhhhcccccc
Confidence 1 12334445899999999999998 8999999999999999876 6888999999999
Q ss_pred eEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (325)
Q Consensus 181 v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~ 260 (325)
|.++.|+|+.. ++++||.|.+|++||+.++ ..++.|.+|.++|.+++|+|.| .+||+|+.||.|.+||+.++
T Consensus 538 V~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G------~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 538 VDCVSFHPNSN-YVATGSSDRTVRLWDVSTG------NSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred cceEEECCccc-ccccCCCCceEEEEEcCCC------cEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCC
Confidence 99999999998 8999999999999999998 5689999999999999999987 79999999999999999999
Q ss_pred CCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceeeec
Q 020480 261 SVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLLYK 306 (325)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~~~ 306 (325)
+ ++..+.+|++.|.+|.|+.+|.+ ++|.|+++++||+......
T Consensus 610 ~---~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 610 S---LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred c---chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 8 48888999999999999999985 8999999999998766554
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-28 Score=202.18 Aligned_cols=161 Identities=20% Similarity=0.291 Sum_probs=146.6
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
.+|.++|.+++|+|++ ..||+|+.|.++++||+.+ ..|.++.++|...|.+++|+|++. .|++|+.||
T Consensus 112 ~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~T----------eTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg 179 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDT----------ETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDG 179 (480)
T ss_pred CCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCC----------CCcceeecCCccEEEEEEECCCcc-hhhccccCC
Confidence 3699999999999988 7999999999999999988 678999999999999999999999 899999999
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC----CCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
+|++||.++++. ..+.+.+|+..|++++|.|- ..++||+++.||+++|||+..+.+ +..+.+|+.+|+
T Consensus 180 ~I~lwdpktg~~-----~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~---~~~lsgHT~~VT 251 (480)
T KOG0271|consen 180 SIRLWDPKTGQQ-----IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC---VRTLSGHTASVT 251 (480)
T ss_pred eEEEecCCCCCc-----ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE---EEEeccCccceE
Confidence 999999998864 46678999999999999883 236899999999999999999885 888999999999
Q ss_pred EEEeCCCCCc-cCCCCceEEeeecce
Q 020480 278 VSILNASFRL-SHEDTCTCTHRHSRY 302 (325)
Q Consensus 278 ~i~~~p~~~~-~~~~d~~~~~~~~~~ 302 (325)
||.|--+|.+ +++.|+++++|+...
T Consensus 252 CvrwGG~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 252 CVRWGGEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred EEEEcCCceEEecCCCceEEEEEccc
Confidence 9999988876 999999999997643
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=5.1e-28 Score=216.20 Aligned_cols=164 Identities=16% Similarity=0.250 Sum_probs=151.3
Q ss_pred EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (325)
Q Consensus 117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 196 (325)
......+|.++|..+.|+|+. ++|+++++|++|++|++.+ ...+..+.||..+|+++.|+|.|- +|||
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t----------~s~~V~y~GH~~PVwdV~F~P~Gy-YFat 510 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDT----------WSCLVIYKGHLAPVWDVQFAPRGY-YFAT 510 (707)
T ss_pred eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccc----------ceeEEEecCCCcceeeEEecCCce-EEEe
Confidence 334478999999999999998 7999999999999999988 455677889999999999999988 8999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (325)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 276 (325)
|+.|++.++|..... .+++.+.+|-+.|.|+.|||+. +++|+||.|.+||+||+.++.. +..+.+|.++|
T Consensus 511 as~D~tArLWs~d~~------~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~~~V 580 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHN------KPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS---VRIFTGHKGPV 580 (707)
T ss_pred cCCCceeeeeecccC------CchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcE---EEEecCCCCce
Confidence 999999999998875 6789999999999999999986 8999999999999999999995 89999999999
Q ss_pred eEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 277 GVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 277 ~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
.+++|+|+|++ +|+.|+.+++||+..
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 99999999996 899999999999865
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=185.37 Aligned_cols=181 Identities=23% Similarity=0.318 Sum_probs=154.9
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
-...|..++|+|++ +++|+|+-|....||++..... .+.....+.+.+|++.+.++.|-+++ .|+|+|.|.++
T Consensus 96 ~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~----~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TC 168 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDA----EGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTC 168 (343)
T ss_pred CceeEEEEEECCCC-CeEEecCcCceeEEEecccccc----cccceeeeeecCccceeEEEEEcCCC--ceEecCCCceE
Confidence 45689999999999 7999999999999999985211 12334556789999999999999854 59999999999
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA 283 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p 283 (325)
.+||++++ ..+..|.+|.+.|.+++++|...+.|++|+.|++.++||+|.+.+ ++++.+|.+.|++|.|.|
T Consensus 169 alWDie~g------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---~qtF~ghesDINsv~ffP 239 (343)
T KOG0286|consen 169 ALWDIETG------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---VQTFEGHESDINSVRFFP 239 (343)
T ss_pred EEEEcccc------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce---eEeecccccccceEEEcc
Confidence 99999998 458889999999999999995568999999999999999999986 999999999999999999
Q ss_pred CCCc--cCCCCceEEeeecce--ee-------eccCeeEEEeecCCCc
Q 020480 284 SFRL--SHEDTCTCTHRHSRY--LL-------YKFPFFVLVFPLFPSL 320 (325)
Q Consensus 284 ~~~~--~~~~d~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~ 320 (325)
+|.. +|++|++|+++|+|- .+ ..+|+.++.|.+...+
T Consensus 240 ~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl 287 (343)
T KOG0286|consen 240 SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL 287 (343)
T ss_pred CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence 9984 999999999999876 22 2466777777766543
No 10
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.8e-27 Score=184.00 Aligned_cols=211 Identities=20% Similarity=0.306 Sum_probs=178.0
Q ss_pred CCceEEEEeeCCCCCCCCCcceEEEEEEec--CCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEE
Q 020480 42 WPSLTVEWLPDREEPPGKDYSVQKMILGTH--TSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII 119 (325)
Q Consensus 42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (325)
..=++++|+|..+. ++++++. -+-.....|.|.+..- .+.+...
T Consensus 9 f~GysvqfSPf~~n---------rLavAt~q~yGl~G~G~L~ile~~~-------------------------~~gi~e~ 54 (311)
T KOG0277|consen 9 FHGYSVQFSPFVEN---------RLAVATAQHYGLAGNGRLFILEVTD-------------------------PKGIQEC 54 (311)
T ss_pred cccceeEecccccc---------hhheeehhhcccccCceEEEEecCC-------------------------CCCeEEE
Confidence 44578999998763 4444433 2334556888887641 2457777
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
..+.-...+..++|++...+.+++++.||.+++||+.. ...|+..++.|..+|.++.|++..+..++++|.
T Consensus 55 ~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~---------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 55 QSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM---------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred EeeecccceeEeeecCCCcceEEEEecCceEEEeccCC---------CCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence 88889999999999999889999999999999999654 357889999999999999999988888999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
|++|++|+...+ ..++++.+|...|+...|+|..++++++++.|+++++||+|.... ...+..|...|.+.
T Consensus 126 D~TiKLW~~~r~------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~i~ah~~Eil~c 196 (311)
T KOG0277|consen 126 DGTIKLWDPNRP------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMSIEAHNSEILCC 196 (311)
T ss_pred CCceEeecCCCC------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeEEEeccceeEee
Confidence 999999999876 458889999999999999999999999999999999999998764 44489999999999
Q ss_pred EeCCCCC---ccCCCCceEEeeecceee
Q 020480 280 ILNASFR---LSHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 280 ~~~p~~~---~~~~~d~~~~~~~~~~~~ 304 (325)
.|+.-.. .+++.|+.++.||+|.+.
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehhhcc
Confidence 9998554 389999999999998765
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=6.8e-28 Score=200.49 Aligned_cols=224 Identities=18% Similarity=0.260 Sum_probs=173.9
Q ss_pred CCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCC----------------CCCCeEEEEEEECCCCCCCcccCCCCccc
Q 020480 40 LEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE----------------NEPNYLMLAQVQLPLDDSENDARHYDDDR 103 (325)
Q Consensus 40 ~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 103 (325)
..-|+-.|.|.|++. ++++|+++++ +++.-+.-+.+. +.+.-- -..+..
T Consensus 95 vkc~V~~v~WtPeGR----------RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws-~~g~wm----iSgD~g 159 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGR----------RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWS-HNGTWM----ISGDKG 159 (464)
T ss_pred cccceeeEEEcCCCc----------eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEc-cCCCEE----EEcCCC
Confidence 455778899999874 6778877643 233333333332 100000 012333
Q ss_pred CCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEE
Q 020480 104 SDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183 (325)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 183 (325)
+-++.|...-..++.+ ...|...|.+++|+|.+ ..|++|+.||+|+|||... .+....+.+|.-.|.+
T Consensus 160 G~iKyWqpnmnnVk~~-~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~----------~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 160 GMIKYWQPNMNNVKII-QAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRM----------PKEERVLRGHGWDVKS 227 (464)
T ss_pred ceEEecccchhhhHHh-hHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccC----------CchhheeccCCCCcce
Confidence 4555554444333332 22356999999999966 7999999999999999987 4555668999999999
Q ss_pred EEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC
Q 020480 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS 263 (325)
Q Consensus 184 l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 263 (325)
++|+|... ++++|+.|..|++||.+++ .++.++.+|+..|..+.|+|++ ++|+++|.|..+++||+|+.+.
T Consensus 228 vdWHP~kg-LiasgskDnlVKlWDprSg------~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkE- 298 (464)
T KOG0284|consen 228 VDWHPTKG-LIASGSKDNLVKLWDPRSG------SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKE- 298 (464)
T ss_pred eccCCccc-eeEEccCCceeEeecCCCc------chhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHH-
Confidence 99999987 9999999999999999998 6788889999999999999997 8999999999999999997774
Q ss_pred CCeeEeeccCCCeeEEEeCCCCC--c-cCCCCceEEeeecc
Q 020480 264 KPVQSVVAHQSEVGVSILNASFR--L-SHEDTCTCTHRHSR 301 (325)
Q Consensus 264 ~~~~~~~~h~~~v~~i~~~p~~~--~-~~~~d~~~~~~~~~ 301 (325)
+.++.+|+..|+++.|+|-.. + +++.|+.+..|.+.
T Consensus 299 --l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 299 --LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred --HHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 889999999999999999443 3 89999999999875
No 12
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-26 Score=181.99 Aligned_cols=167 Identities=17% Similarity=0.254 Sum_probs=149.6
Q ss_pred EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (325)
Q Consensus 117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 196 (325)
.+....+|..+|.++.|++.....+++++.|++|++|+... .+.+.++.+|...|....|+|..++++++
T Consensus 96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r----------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR----------PNSVQTFNGHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC----------CcceEeecCCccEEEEEecCCCCCCeEEE
Confidence 34445679999999999998778899999999999999876 46688999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (325)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 276 (325)
+|.|+.+++||++...+ ...+..|...+.++.|+..+.++++||+.|+.||.||+|+.+. |+..+.+|.-.|
T Consensus 166 ~Sgd~~l~lwdvr~~gk------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--pl~eL~gh~~AV 237 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGK------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--PLFELNGHGLAV 237 (311)
T ss_pred ccCCceEEEEEecCCCc------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--cceeecCCceEE
Confidence 99999999999998743 2337889999999999998889999999999999999999886 899999999999
Q ss_pred eEEEeCCCCC---ccCCCCceEEeeecc
Q 020480 277 GVSILNASFR---LSHEDTCTCTHRHSR 301 (325)
Q Consensus 277 ~~i~~~p~~~---~~~~~d~~~~~~~~~ 301 (325)
..|+|+|... .++++|.++++|+..
T Consensus 238 Rkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred EEEecCcchhhHhhhccccceEEecccc
Confidence 9999999765 399999999999864
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=6.4e-26 Score=181.46 Aligned_cols=158 Identities=22% Similarity=0.319 Sum_probs=140.1
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
..+|.+.+.|+.|-+++ .|++++.|.+.-+||+++ .+.+..+.+|.+-|.+|+++|...+.+++|+.|
T Consensus 141 l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~----------g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIET----------GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred ecCccceeEEEEEcCCC--ceEecCCCceEEEEEccc----------ceEEEEecCCcccEEEEecCCCCCCeEEecccc
Confidence 45799999999999965 699999999999999998 455778999999999999999444489999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee--ccCCCeeE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV--AHQSEVGV 278 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~ 278 (325)
+..++||+|.+ .++++|.+|.+.|++++|.|+| .-|++|++|++.|+||+|.... +..+. ....+|++
T Consensus 209 ~~aklWD~R~~------~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~---~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 209 KSAKLWDVRSG------QCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQE---LAVYSHDSIICGITS 278 (343)
T ss_pred cceeeeeccCc------ceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcE---EeeeccCcccCCcee
Confidence 99999999998 6799999999999999999998 6999999999999999999874 55553 33468999
Q ss_pred EEeCCCCCc--cCCCCceEEeeec
Q 020480 279 SILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 279 i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
++|+..|++ .|..|.+|.+||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EEEcccccEEEeeecCCceeEeec
Confidence 999999996 7789999999986
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.1e-26 Score=179.41 Aligned_cols=218 Identities=19% Similarity=0.261 Sum_probs=175.2
Q ss_pred HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCC
Q 020480 31 LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFG 110 (325)
Q Consensus 31 ~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (325)
++..+..|+.. +++++|.|..- +++ ++.+.+..+.|+...-+
T Consensus 6 ~~~~~~gh~~r--~W~~awhp~~g----------~il----Ascg~Dk~vriw~~~~~---------------------- 47 (312)
T KOG0645|consen 6 LEQKLSGHKDR--VWSVAWHPGKG----------VIL----ASCGTDKAVRIWSTSSG---------------------- 47 (312)
T ss_pred eEEeecCCCCc--EEEEEeccCCc----------eEE----EeecCCceEEEEecCCC----------------------
Confidence 34456666664 89999999631 122 23345568888866311
Q ss_pred CCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC
Q 020480 111 CANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (325)
Q Consensus 111 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 190 (325)
..-.++.+..-+|+..|..++|+|.| ++||+|+.|.++.||.-.. +..+.+.++.||...|.+++|+++|
T Consensus 48 -~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~--------~efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 48 -DSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKED--------GEFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred -CcEEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecCC--------CceeEEeeeeccccceeEEEEcCCC
Confidence 01122222233699999999999999 6999999999999998776 5566788999999999999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (325)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 270 (325)
. +||+|++|.+|.||.+..... +.+...++.|...|-.+.|||.. -+|++++.|.+|++|+-........++++.
T Consensus 118 ~-~LATCSRDKSVWiWe~deddE---fec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~ 192 (312)
T KOG0645|consen 118 N-YLATCSRDKSVWIWEIDEDDE---FECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLD 192 (312)
T ss_pred C-EEEEeeCCCeEEEEEecCCCc---EEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEec
Confidence 9 999999999999999985433 46788899999999999999985 699999999999999988555456789999
Q ss_pred ccCCCeeEEEeCCCCC-c-cCCCCceEEeeecc
Q 020480 271 AHQSEVGVSILNASFR-L-SHEDTCTCTHRHSR 301 (325)
Q Consensus 271 ~h~~~v~~i~~~p~~~-~-~~~~d~~~~~~~~~ 301 (325)
+|...|.+++|++.|. + ++++|+++++|...
T Consensus 193 g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 193 GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred CccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 9999999999999884 4 99999999999743
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=2.2e-25 Score=188.64 Aligned_cols=254 Identities=19% Similarity=0.226 Sum_probs=179.5
Q ss_pred hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCC-CCc
Q 020480 16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDD-SEN 94 (325)
Q Consensus 16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~-~~~ 94 (325)
..+-++|||+++.. +-..+.+|+.+ ++++.|...++...........+++...+.. ...++.+.... .+.
T Consensus 254 ~~~G~~riw~~~G~-l~~tl~~HkgP--I~slKWnk~G~yilS~~vD~ttilwd~~~g~------~~q~f~~~s~~~lDV 324 (524)
T KOG0273|consen 254 SEDGEARIWNKDGN-LISTLGQHKGP--IFSLKWNKKGTYILSGGVDGTTILWDAHTGT------VKQQFEFHSAPALDV 324 (524)
T ss_pred ecCcEEEEEecCch-hhhhhhccCCc--eEEEEEcCCCCEEEeccCCccEEEEeccCce------EEEeeeeccCCccce
Confidence 46788999999885 44588888865 9999999998755433333333333332221 00111111111 000
Q ss_pred ---ccC--CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCC
Q 020480 95 ---DAR--HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS 169 (325)
Q Consensus 95 ---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~ 169 (325)
+.. .....++-+..+... .+-......+|.++|+++.|+|.+ .+|++++.|++++||+... ..
T Consensus 325 dW~~~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~----------~~ 392 (524)
T KOG0273|consen 325 DWQSNDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQ----------SN 392 (524)
T ss_pred EEecCceEeecCCCceEEEEEec-CCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCC----------Cc
Confidence 000 011111112111111 111223456799999999999999 7999999999999999765 34
Q ss_pred CcEEEecCCCceEEEEecCCCC--------CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCc
Q 020480 170 PDLRLRGHSTEGYGLSWSKFKE--------GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241 (325)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~p~~~--------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 241 (325)
....+.+|+..|+.+.|+|.++ ..+++++.|++|++||+..+ .+++.|..|..+|++++|+|++ .
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------v~i~~f~kH~~pVysvafS~~g-~ 465 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------VPIHTLMKHQEPVYSVAFSPNG-R 465 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------ceeEeeccCCCceEEEEecCCC-c
Confidence 4667889999999999999863 36999999999999999988 6799999999999999999997 7
Q ss_pred EEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR 301 (325)
Q Consensus 242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~ 301 (325)
++|+|+.||.|++|+.++++. ++.+.+ .+.|..++|+..|.. .+..|+.+++-++|
T Consensus 466 ylAsGs~dg~V~iws~~~~~l---~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTGKL---VKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCCeeEeccccchhe---eEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999984 676654 566999999998874 34456666665554
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=3.2e-25 Score=187.75 Aligned_cols=206 Identities=17% Similarity=0.289 Sum_probs=168.9
Q ss_pred CceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEe
Q 020480 43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI 122 (325)
Q Consensus 43 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (325)
.+++++|..++. .+++|.... ++.||+.. +. .+...-
T Consensus 237 dVT~L~Wn~~G~----------~LatG~~~G-----~~riw~~~---------------------------G~-l~~tl~ 273 (524)
T KOG0273|consen 237 DVTSLDWNNDGT----------LLATGSEDG-----EARIWNKD---------------------------GN-LISTLG 273 (524)
T ss_pred CcceEEecCCCC----------eEEEeecCc-----EEEEEecC---------------------------ch-hhhhhh
Confidence 478899988875 466666544 67777652 11 111234
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC-------------------------------CCCCCCCc
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP-------------------------------LDGACSPD 171 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~-------------------------------~~~~~~~~ 171 (325)
.|.++|.+++|+..| ++|++++.||++.+||......... .-+...|+
T Consensus 274 ~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~ 352 (524)
T KOG0273|consen 274 QHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPV 352 (524)
T ss_pred ccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcc
Confidence 699999999999999 7999999999999999854321100 11334677
Q ss_pred EEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC--------cEE
Q 020480 172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE--------YLF 243 (325)
Q Consensus 172 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--------~~l 243 (325)
.++.+|.++|.++.|+|.+. +|+|||.|++++||..... .+.+.+.+|+..|+.+.|+|.++ ..+
T Consensus 353 ~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l 425 (524)
T KOG0273|consen 353 KTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQS------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML 425 (524)
T ss_pred eeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCC------cchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence 88999999999999999999 9999999999999998776 46778899999999999999753 578
Q ss_pred EEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 244 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
++++.|++|++||+..+. +++.+..|+.+|.+++|+|+|++ +|+.|+.+.+|+.+.
T Consensus 426 ~sas~dstV~lwdv~~gv---~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVESGV---PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred EEeecCCeEEEEEccCCc---eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 999999999999999998 59999899999999999999996 899999999998755
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=4.9e-25 Score=175.33 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=143.8
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
...+|...|+.+..++++ ++.++++.|+++++||+.. .++.+.|.+|+.-|.+++|++++. .++||+.
T Consensus 58 ~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~----------g~~t~~f~GH~~dVlsva~s~dn~-qivSGSr 125 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLAT----------GESTRRFVGHTKDVLSVAFSTDNR-QIVSGSR 125 (315)
T ss_pred eeeccceEecceEEccCC-ceEEeccccceEEEEEecC----------CcEEEEEEecCCceEEEEecCCCc-eeecCCC
Confidence 455799999999999999 7999999999999999987 366888999999999999999998 8999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecC--CccEEEEEeecCC-CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVH--EGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 276 (325)
|.+|++|++... +..+...+ +..|.+++|+|+. ..+|++++.|++|++||+++.+. ...+.+|.+.+
T Consensus 126 DkTiklwnt~g~-------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---~~~~~gh~~~v 195 (315)
T KOG0279|consen 126 DKTIKLWNTLGV-------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---RTTFIGHSGYV 195 (315)
T ss_pred cceeeeeeeccc-------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---hhccccccccE
Confidence 999999999875 33333333 7899999999973 36899999999999999999884 77888999999
Q ss_pred eEEEeCCCCCc--cCCCCceEEeeecceee
Q 020480 277 GVSILNASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 277 ~~i~~~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
+.++++|+|.+ +|+.|+.+.+|+++.-.
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 99999999997 89999999999986643
No 18
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=6.8e-27 Score=191.19 Aligned_cols=220 Identities=16% Similarity=0.222 Sum_probs=183.4
Q ss_pred hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
+.+.|++||||++|+.++...+..|+.. ++.+++... .++.|+. +..+.+|+++--
T Consensus 212 SGlrDnTikiWD~n~~~c~~~L~GHtGS--VLCLqyd~r------------viisGSS-----DsTvrvWDv~tg----- 267 (499)
T KOG0281|consen 212 SGLRDNTIKIWDKNSLECLKILTGHTGS--VLCLQYDER------------VIVSGSS-----DSTVRVWDVNTG----- 267 (499)
T ss_pred cccccCceEEeccccHHHHHhhhcCCCc--EEeeeccce------------EEEecCC-----CceEEEEeccCC-----
Confidence 5678999999999999999999999987 777777652 3444443 347999988511
Q ss_pred cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480 94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR 173 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 173 (325)
..++ ..+.|...|..+.|+. .++++++.|.++.+||+..+. .....+.
T Consensus 268 --------------------e~l~--tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps-------~it~rrV 315 (499)
T KOG0281|consen 268 --------------------EPLN--TLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPT-------DITLRRV 315 (499)
T ss_pred --------------------chhh--HHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCch-------HHHHHHH
Confidence 1122 3578999999999987 589999999999999998621 1122345
Q ss_pred EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (325)
Q Consensus 174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~ 253 (325)
+.||..+|..+.|+. . ++++++.|.+|++|++.++ .+++++.+|..+|-|+.+. + .++++|+.|.+|+
T Consensus 316 LvGHrAaVNvVdfd~--k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIR 383 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFDD--K-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIR 383 (499)
T ss_pred Hhhhhhheeeecccc--c-eEEEecCCceEEEEeccce------eeehhhhcccccceehhcc--C-eEEEecCCCceEE
Confidence 789999999999974 3 8999999999999999988 5788999999999999885 3 7999999999999
Q ss_pred EEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecceee
Q 020480 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 254 iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~~~ 304 (325)
+||+..+.+ +..+++|..-|.+|.|+....++|++||++++|++..-.
T Consensus 384 lwdi~~G~c---LRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 384 LWDIECGAC---LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred EEeccccHH---HHHHhchHHhhhheeecCceeeeccccceEEEEeccccc
Confidence 999999996 889999999999999999888899999999999986543
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=3.4e-25 Score=173.62 Aligned_cols=232 Identities=15% Similarity=0.177 Sum_probs=178.4
Q ss_pred hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
+...|.+||.|...++.+|..+-.... .+-.++..|+... ++.+ ....|.+++++-.
T Consensus 15 sA~YDhTIRfWqa~tG~C~rTiqh~ds--qVNrLeiTpdk~~----------LAaa------~~qhvRlyD~~S~----- 71 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGICSRTIQHPDS--QVNRLEITPDKKD----------LAAA------GNQHVRLYDLNSN----- 71 (311)
T ss_pred eccCcceeeeeehhcCeEEEEEecCcc--ceeeEEEcCCcch----------hhhc------cCCeeEEEEccCC-----
Confidence 456889999999999999876544332 4667888887642 2221 2236777777411
Q ss_pred cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480 94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR 173 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 173 (325)
.+ .......+|...|+++.|..+| +.+++|++||+++|||++.. .. ..
T Consensus 72 -------------------np-~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~--------~~---qR 119 (311)
T KOG0315|consen 72 -------------------NP-NPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSL--------SC---QR 119 (311)
T ss_pred -------------------CC-CceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCc--------cc---ch
Confidence 11 1333456799999999999999 89999999999999999971 11 22
Q ss_pred EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCC----------------------------------------
Q 020480 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK---------------------------------------- 213 (325)
Q Consensus 174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~---------------------------------------- 213 (325)
.-.|.++|.++..+|+.. .|++|..+|.|++||++....
T Consensus 120 ~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 120 NYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred hccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 234668888888888877 788888888888888876521
Q ss_pred ---CCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--c
Q 020480 214 ---NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--S 288 (325)
Q Consensus 214 ---~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~ 288 (325)
...+.++..+++|+..+..+.++|++ .+||++|.|.+++||+....- +.-..+.+|...++..+|+.+|++ +
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~--kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFF--KLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCce--eeEEEeecCCceEEeeeeccCccEEEe
Confidence 12234677889999999999999997 699999999999999999872 246677899999999999999996 8
Q ss_pred CCCCceEEeeecceee
Q 020480 289 HEDTCTCTHRHSRYLL 304 (325)
Q Consensus 289 ~~~d~~~~~~~~~~~~ 304 (325)
++.|.+.++|++..-.
T Consensus 276 assd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 276 ASSDHTARLWDLSAGK 291 (311)
T ss_pred cCCCCceeecccccCc
Confidence 9999999999986543
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-25 Score=195.38 Aligned_cols=227 Identities=16% Similarity=0.253 Sum_probs=187.6
Q ss_pred hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
-.+.+..+.||+-++..+...+.... -|+.+..|.+..+ =+++|+... +|.+++.+
T Consensus 30 a~LynG~V~IWnyetqtmVksfeV~~--~PvRa~kfiaRkn----------Wiv~GsDD~-----~IrVfnyn------- 85 (794)
T KOG0276|consen 30 AALYNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIARKN----------WIVTGSDDM-----QIRVFNYN------- 85 (794)
T ss_pred EeeecCeeEEEecccceeeeeeeecc--cchhhheeeeccc----------eEEEecCCc-----eEEEEecc-------
Confidence 34567788899988877665555544 4577777777653 456666533 77777664
Q ss_pred cccCCCCcccCCCCCCCCCCCceE-EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480 94 NDARHYDDDRSDFGGFGCANGKVQ-IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL 172 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 172 (325)
.++ ......|...|.+++.+|..+ ++.+++.|-.|++|+... .+....
T Consensus 86 ---------------------t~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~---------~wa~~q 134 (794)
T KOG0276|consen 86 ---------------------TGEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWEN---------EWACEQ 134 (794)
T ss_pred ---------------------cceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccC---------ceeeee
Confidence 122 233457999999999999985 899999999999999986 356678
Q ss_pred EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCc
Q 020480 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQY 251 (325)
Q Consensus 173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~ 251 (325)
++.||+..|.+++|+|..++.++|++.|++|+||.+... .+..++.+|...|+++.+-+-+ ..+++||++|.+
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC------CCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 899999999999999999999999999999999999876 5677889999999999998744 358999999999
Q ss_pred EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee
Q 020480 252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
++|||..+..| ++++.+|..-|+.+.|+|.-.+ +|+.||++++|....+.
T Consensus 209 iKvWDyQtk~C---V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 209 IKVWDYQTKSC---VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred EEEeecchHHH---HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 99999999996 9999999999999999998775 99999999999876543
No 21
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.7e-25 Score=188.16 Aligned_cols=251 Identities=20% Similarity=0.240 Sum_probs=188.8
Q ss_pred hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC--Cc
Q 020480 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS--EN 94 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--~~ 94 (325)
..-|+.+++...+-+| +.|.+-++.+.++++|+..+. ...-....+++|++.+ .|.||++.+-..-. ..
T Consensus 150 s~LEvYVyn~~e~nlY-vHHD~ilpafPLC~ewld~~~---~~~~~gNyvAiGtmdp-----~IeIWDLDI~d~v~P~~~ 220 (463)
T KOG0270|consen 150 SYLEVYVYNEEEENLY-VHHDFILPAFPLCIEWLDHGS---KSGGAGNYVAIGTMDP-----EIEIWDLDIVDAVLPCVT 220 (463)
T ss_pred eEEEEEEEcCCCccee-EecceeccCcchhhhhhhcCC---CCCCCcceEEEeccCc-----eeEEecccccccccccee
Confidence 3467888888888898 555666677779999998732 2222345788999876 68899886431100 00
Q ss_pred ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480 95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL 174 (325)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 174 (325)
-.+...... ...++ +-...-+|+.+|.++.|+..-.++||+|+.|.+|.+||+.+ .++..++
T Consensus 221 LGs~~sk~~-------~k~~k-~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~----------g~p~~s~ 282 (463)
T KOG0270|consen 221 LGSKASKKK-------KKKGK-RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT----------GKPKSSI 282 (463)
T ss_pred echhhhhhh-------hhhcc-cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC----------CCcceeh
Confidence 000000000 00001 11112358999999999998778999999999999999998 5667788
Q ss_pred ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEE
Q 020480 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254 (325)
Q Consensus 175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~i 254 (325)
..|.+.|.++.|+|..+..|++|+.|++|.+.|+|..... ..... -.+.|-.++|+|..++.++++..||+|+-
T Consensus 283 ~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s---~~~wk---~~g~VEkv~w~~~se~~f~~~tddG~v~~ 356 (463)
T KOG0270|consen 283 THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS---GKEWK---FDGEVEKVAWDPHSENSFFVSTDDGTVYY 356 (463)
T ss_pred hhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---CceEE---eccceEEEEecCCCceeEEEecCCceEEe
Confidence 8899999999999999989999999999999999963221 11222 34679999999998899999999999999
Q ss_pred EEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--c-cCCCCceEEeeecce
Q 020480 255 WDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--L-SHEDTCTCTHRHSRY 302 (325)
Q Consensus 255 wd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~-~~~~d~~~~~~~~~~ 302 (325)
+|+|.... ++.++++|.++|.+|++++.-. + +++.|+.+++|++..
T Consensus 357 ~D~R~~~~--~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 357 FDIRNPGK--PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred eecCCCCC--ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 99999864 8999999999999999997644 3 899999999998644
No 22
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=3.6e-24 Score=180.68 Aligned_cols=179 Identities=17% Similarity=0.262 Sum_probs=155.5
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
+..+|++.-..++|++.....+++|+.|+.|++||+....... ....+...+.+|.+.|..++|++....+|++++.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~---~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED---KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC---ccccceEEeecCCcceehhhccccchhhheeecC
Confidence 4578888888999999877799999999999999998743321 2345667789999999999999999889999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
|+.+.|||+|.... .+.+...+|.+.|++++|+|.+..+||+||.|++|++||+|..+. +++++.+|...|.+|
T Consensus 249 d~~L~iwD~R~~~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V 322 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQV 322 (422)
T ss_pred CCeEEEEEcCCCCC----CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEE
Confidence 99999999997422 456677899999999999999889999999999999999999886 899999999999999
Q ss_pred EeCCCCC--c-cCCCCceEEeeecceeeecc
Q 020480 280 ILNASFR--L-SHEDTCTCTHRHSRYLLYKF 307 (325)
Q Consensus 280 ~~~p~~~--~-~~~~d~~~~~~~~~~~~~~~ 307 (325)
.|+|+.. + +++.|+.+.+||+......+
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEecccccccc
Confidence 9999876 2 77899999999987766554
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=6.6e-25 Score=194.86 Aligned_cols=227 Identities=17% Similarity=0.220 Sum_probs=184.1
Q ss_pred hhhhHHHHhhhHhcC----hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCC
Q 020480 14 ERLINEEYKIWKKNT----PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL 89 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~----~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 89 (325)
+..+|..+++|+.|. ..++....+|+.. +..++.+..+. ..++.+++.. .+++|.+ |.
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~s--vgava~~~~~a---------sffvsvS~D~-----tlK~W~l--~~ 443 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNS--VGAVAGSKLGA---------SFFVSVSQDC-----TLKLWDL--PK 443 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccc--cceeeecccCc---------cEEEEecCCc-----eEEEecC--CC
Confidence 345889999998744 3456666777666 66677754433 3455555533 6788866 32
Q ss_pred CCCCcccCCCCcccCCCCCCCCCCCceEE---EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCC
Q 020480 90 DDSENDARHYDDDRSDFGGFGCANGKVQI---IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDG 166 (325)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~ 166 (325)
. . + ..+++.+ .....|...|++++++|.+ .++|+|+.|.+.++|+++.
T Consensus 444 s--~-------~----------~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~--------- 494 (775)
T KOG0319|consen 444 S--K-------E----------TAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQ--------- 494 (775)
T ss_pred c--c-------c----------ccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccC---------
Confidence 0 0 0 0111221 1234699999999999988 7999999999999999986
Q ss_pred CCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEE
Q 020480 167 ACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV 246 (325)
Q Consensus 167 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~ 246 (325)
.....++.||+..|+++.|+|... +++|+|.|++|+||.+.+. .|+.++.+|++.|..++|-.++ ..|+||
T Consensus 495 -~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f------SClkT~eGH~~aVlra~F~~~~-~qliS~ 565 (775)
T KOG0319|consen 495 -LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF------SCLKTFEGHTSAVLRASFIRNG-KQLISA 565 (775)
T ss_pred -ceEEEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc------eeeeeecCccceeEeeeeeeCC-cEEEec
Confidence 566789999999999999999988 9999999999999999987 7899999999999999999887 688899
Q ss_pred ecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeee
Q 020480 247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRH 299 (325)
Q Consensus 247 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~ 299 (325)
+.||-|++|++.+..| +.++.+|...|++++.+|... ++|+.|+.+.+|.
T Consensus 566 ~adGliKlWnikt~eC---~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 566 GADGLIKLWNIKTNEC---EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cCCCcEEEEeccchhh---hhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999997 899999999999999999888 4889999999985
No 24
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=3.2e-24 Score=177.23 Aligned_cols=249 Identities=18% Similarity=0.213 Sum_probs=183.1
Q ss_pred hhhHHHHhhhHhcChhHHH----HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCC
Q 020480 15 RLINEEYKIWKKNTPFLYD----LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLD 90 (325)
Q Consensus 15 ~~~~~~~~iw~~~~~~~y~----~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 90 (325)
...|+++++|+-|.+.+.. .+..|+.. +-+|+-.+++. +++-|+. ++.|.||+..-...
T Consensus 165 as~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~--V~sVsv~~sgt----------r~~SgS~-----D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGENKVKALKVCRGHKRS--VDSVSVDSSGT----------RFCSGSW-----DTMLKIWSVETDEE 227 (423)
T ss_pred ecCCceEEEEEecCchhhhhHHhHhcccccc--eeEEEecCCCC----------eEEeecc-----cceeeecccCCCcc
Confidence 3478999999998877653 33345544 77788888775 4544443 45788887321111
Q ss_pred CCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCC
Q 020480 91 DSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP 170 (325)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~ 170 (325)
+..++.+. .....-..-.....+...+..-+|.++|.++.|++. ..+.+++.|.+|+.||+.. +..
T Consensus 228 ~~~E~~s~--~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDlet--------g~~-- 293 (423)
T KOG0313|consen 228 DELESSSN--RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLET--------GGL-- 293 (423)
T ss_pred ccccccch--hhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeec--------ccc--
Confidence 11111111 000000000001223344556789999999999994 4789999999999999987 222
Q ss_pred cEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC
Q 020480 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ 250 (325)
Q Consensus 171 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg 250 (325)
..++. ....+.+++.+|... +|++|+.|..+++||.|.+... ...+++.+|++.|.++.|+|.+.+.|++|+.|+
T Consensus 294 ~~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs---~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 294 KSTLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGS---VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred eeeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCc---eeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 33333 345789999999877 9999999999999999987542 356788999999999999999999999999999
Q ss_pred cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC-ccCCCCceEEeeecc
Q 020480 251 YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR-LSHEDTCTCTHRHSR 301 (325)
Q Consensus 251 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~~~~~d~~~~~~~~~ 301 (325)
++++||+|+... |+..+.+|...|.++.|+..+. ++||.|+++++....
T Consensus 369 t~klWDvRS~k~--plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEeccCCC--cceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 999999999875 7999999999999999998754 599999999987654
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=5.2e-25 Score=180.72 Aligned_cols=165 Identities=22% Similarity=0.300 Sum_probs=147.5
Q ss_pred eEEEEEe-ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480 116 VQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (325)
Q Consensus 116 ~~~~~~~-~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 194 (325)
.++.+.+ +|.+.|.|+++.|.+ ..|++|+.|++++|||+.+ .+...++.||...|..+++++..+ ++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlat----------g~LkltltGhi~~vr~vavS~rHp-Yl 208 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLAT----------GQLKLTLTGHIETVRGVAVSKRHP-YL 208 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEccc----------CeEEEeecchhheeeeeeecccCc-eE
Confidence 3444433 599999999999987 7999999999999999998 344677899999999999999999 89
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC
Q 020480 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (325)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 274 (325)
++++.|+.|+.||+... +.++.+.+|-+.|++++.+|.- ..|++|+.|.++||||+|+... +..+.+|..
T Consensus 209 Fs~gedk~VKCwDLe~n------kvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~---V~~l~GH~~ 278 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYN------KVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRAS---VHVLSGHTN 278 (460)
T ss_pred EEecCCCeeEEEechhh------hhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccce---EEEecCCCC
Confidence 99999999999999987 5688899999999999999986 6999999999999999999884 999999999
Q ss_pred CeeEEEeCC-CCC-ccCCCCceEEeeecce
Q 020480 275 EVGVSILNA-SFR-LSHEDTCTCTHRHSRY 302 (325)
Q Consensus 275 ~v~~i~~~p-~~~-~~~~~d~~~~~~~~~~ 302 (325)
+|.++.+.| +++ ++++.|+++++||++.
T Consensus 279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~a 308 (460)
T KOG0285|consen 279 PVASVMCQPTDPQVITGSHDSTVRLWDLRA 308 (460)
T ss_pred cceeEEeecCCCceEEecCCceEEEeeecc
Confidence 999999997 444 4999999999999865
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=2.3e-25 Score=185.49 Aligned_cols=222 Identities=19% Similarity=0.270 Sum_probs=180.5
Q ss_pred hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
+.+.+--||+|..|-.-....--.|.. .+..++|+|+.. .++.. +.++.|.||++..|.
T Consensus 155 SgD~gG~iKyWqpnmnnVk~~~ahh~e--aIRdlafSpnDs----------kF~t~-----SdDg~ikiWdf~~~k---- 213 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNNVKIIQAHHAE--AIRDLAFSPNDS----------KFLTC-----SDDGTIKIWDFRMPK---- 213 (464)
T ss_pred EcCCCceEEecccchhhhHHhhHhhhh--hhheeccCCCCc----------eeEEe-----cCCCeEEEEeccCCc----
Confidence 445667789999876544332223322 477899999543 34333 345689999986551
Q ss_pred cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480 94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR 173 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 173 (325)
+.....+|...|.+++|+|.. .++|+|+.|..|++||.++ ...+.+
T Consensus 214 -----------------------ee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprS----------g~cl~t 259 (464)
T KOG0284|consen 214 -----------------------EERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRS----------GSCLAT 259 (464)
T ss_pred -----------------------hhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCC----------cchhhh
Confidence 112347899999999999987 6999999999999999998 344788
Q ss_pred EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (325)
Q Consensus 174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~ 253 (325)
+.+|+..|..+.|+|+++ +|+|+|.|..++++|+++. +.+..+++|+..|+++.|+|-.+.+|.+|+.||.|.
T Consensus 260 lh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~m------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 260 LHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTM------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred hhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHh------HHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence 899999999999999996 9999999999999999965 457788999999999999999899999999999999
Q ss_pred EEEccCCCCCCCeeEe-eccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 254 IWDLRTPSVSKPVQSV-VAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 254 iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
.|.+...+ |+..+ .+|...|++++|+|-|-+ +|+.|.++++|..
T Consensus 333 h~~v~~~~---p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 333 HWVVGLEE---PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEeccccc---cccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99998555 45555 689999999999999986 8999999999964
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.92 E-value=6.6e-24 Score=168.96 Aligned_cols=173 Identities=15% Similarity=0.168 Sum_probs=143.1
Q ss_pred CCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCce
Q 020480 104 SDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEG 181 (325)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v 181 (325)
+.+..|+...+ -...+..+|...|.+++|++++ ..+++|+.|.+|++|+.-. ....++. .+...|
T Consensus 85 ~~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g-----------~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 85 GTLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLG-----------VCKYTIHEDSHREWV 151 (315)
T ss_pred ceEEEEEecCC-cEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecc-----------cEEEEEecCCCcCcE
Confidence 34455665565 3445677999999999999998 7999999999999999876 1122333 337899
Q ss_pred EEEEecCC--CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 182 YGLSWSKF--KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 182 ~~l~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
.++.|+|+ .+ .+++++.|++|++||++.. +..+.+.+|++.++.++++|+| .+.++|+.||.+.+||++.
T Consensus 152 scvrfsP~~~~p-~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 152 SCVRFSPNESNP-IIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNE 223 (315)
T ss_pred EEEEEcCCCCCc-EEEEccCCceEEEEccCCc------chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccC
Confidence 99999999 45 8999999999999999987 4567788999999999999998 6999999999999999999
Q ss_pred CCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecc
Q 020480 260 PSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSR 301 (325)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~ 301 (325)
+++ ++++. |...|++++|+|+... ..+.+..+++|++.
T Consensus 224 ~k~---lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 224 GKN---LYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLE 262 (315)
T ss_pred Cce---eEecc-CCCeEeeEEecCCceeEeeccCCceEEEecc
Confidence 985 66654 7889999999999874 45566679999863
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=1.1e-23 Score=169.32 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=146.7
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
...+|++.|+.+.|+|+| .+||+|+.|..|.+|++.. .++...++.+|+++|+.+.|.++++ .+++++.
T Consensus 42 ~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~g---------dceN~~~lkgHsgAVM~l~~~~d~s-~i~S~gt 110 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYG---------DCENFWVLKGHSGAVMELHGMRDGS-HILSCGT 110 (338)
T ss_pred hcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccc---------cccceeeeccccceeEeeeeccCCC-EEEEecC
Confidence 456899999999999988 7999999999999999764 3555677889999999999999999 8999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-----------------
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV----------------- 262 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~----------------- 262 (325)
|.+++.||++++ ++++.+++|..-|+++.-+..|+.++.+|+.||++++||+|+...
T Consensus 111 Dk~v~~wD~~tG------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d 184 (338)
T KOG0265|consen 111 DKTVRGWDAETG------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD 184 (338)
T ss_pred CceEEEEecccc------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc
Confidence 999999999998 557788899999999986667778889999999999999994221
Q ss_pred ---------------------CCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceeeeccCe
Q 020480 263 ---------------------SKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLLYKFPF 309 (325)
Q Consensus 263 ---------------------~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~~~~~~ 309 (325)
....+.+.+|..+|+.+..+|.|.. +-+.|.++++|++|.+.-.++.
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 0234556788899999999998874 7788999999999887766653
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=3.6e-23 Score=187.61 Aligned_cols=162 Identities=21% Similarity=0.273 Sum_probs=141.9
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
.+|...|++++|+|++ .++++|+.|++|++||+.. ....+.++.+|...|++++|+|.++ ++++|+.|+
T Consensus 200 ~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~---------~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~ 268 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKD---------DGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDG 268 (456)
T ss_pred cccccceeeeEECCCC-cEEEEecCCceEEEeeccC---------CCeEEEEecCCCCceEEEEecCCCC-EEEEecCCC
Confidence 5799999999999999 6999999999999999944 2345788999999999999999995 999999999
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC--CeeEE
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS--EVGVS 279 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~i 279 (325)
+|+|||++.+ .+...+.+|...|++++|++++ ++|++++.|+.|++||+.++... .+..+..+.. +++++
T Consensus 269 tvriWd~~~~------~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~ 340 (456)
T KOG0266|consen 269 TVRIWDVRTG------ECVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSV 340 (456)
T ss_pred cEEEEeccCC------eEEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEE
Confidence 9999999986 6788999999999999999997 79999999999999999998821 1344444443 59999
Q ss_pred EeCCCCCc--cCCCCceEEeeecce
Q 020480 280 ILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 280 ~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
+|+|++.+ ++..|+++++|+++.
T Consensus 341 ~fsp~~~~ll~~~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDRTLKLWDLRS 365 (456)
T ss_pred EECCCCcEEEEecCCCeEEEEEccC
Confidence 99999995 888999999999874
No 30
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=1.1e-22 Score=184.15 Aligned_cols=171 Identities=19% Similarity=0.311 Sum_probs=139.6
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
..+|.+.|++++|+|.+.++||+|+.||+|++|++....... ....++..+.+|...|.+++|+|.+.++|++|+.|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 468999999999999443799999999999999997621100 11245678899999999999999876689999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC-eeEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE-VGVS 279 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~i 279 (325)
+.|+|||++.+ ..+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++. +..+.+|.+. +..+
T Consensus 148 gtVrIWDl~tg------~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~---v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 148 MVVNVWDVERG------KAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI---VSSVEAHASAKSQRC 217 (493)
T ss_pred CEEEEEECCCC------eEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE---EEEEecCCCCcceEE
Confidence 99999999876 4566788899999999999987 6999999999999999999874 7778888765 4567
Q ss_pred EeCCCCCc--c----CCCCceEEeeecceee
Q 020480 280 ILNASFRL--S----HEDTCTCTHRHSRYLL 304 (325)
Q Consensus 280 ~~~p~~~~--~----~~~d~~~~~~~~~~~~ 304 (325)
.|.+++.. + .+.|+.+++||++...
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 88887542 2 2458899999987543
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=6e-23 Score=168.68 Aligned_cols=202 Identities=18% Similarity=0.277 Sum_probs=165.8
Q ss_pred HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCC
Q 020480 31 LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFG 110 (325)
Q Consensus 31 ~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (325)
||.++..|.. | +.++++-|..+ -++.|+ .+..|.||++.
T Consensus 143 l~rVi~gHlg-W-Vr~vavdP~n~----------wf~tgs-----~DrtikIwDla------------------------ 181 (460)
T KOG0285|consen 143 LYRVISGHLG-W-VRSVAVDPGNE----------WFATGS-----ADRTIKIWDLA------------------------ 181 (460)
T ss_pred ehhhhhhccc-e-EEEEeeCCCce----------eEEecC-----CCceeEEEEcc------------------------
Confidence 7777777764 3 56778888653 344443 34478888874
Q ss_pred CCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC
Q 020480 111 CANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (325)
Q Consensus 111 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 190 (325)
.+++++ ..-+|...|..+++++.. .++++++.|+.|+.||+.. .+.++.+.||-+.|.+++.+|.-
T Consensus 182 --tg~Lkl-tltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~----------nkvIR~YhGHlS~V~~L~lhPTl 247 (460)
T KOG0285|consen 182 --TGQLKL-TLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEY----------NKVIRHYHGHLSGVYCLDLHPTL 247 (460)
T ss_pred --cCeEEE-eecchhheeeeeeecccC-ceEEEecCCCeeEEEechh----------hhhHHHhccccceeEEEeccccc
Confidence 456665 356799999999999988 4999999999999999987 56688889999999999999998
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (325)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 270 (325)
. .|+||+.|.+++|||+++. ..+..+.+|...|..+.+.|.++ .+++|+.|++|++||++.++. +.++.
T Consensus 248 d-vl~t~grDst~RvWDiRtr------~~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt---~~tlt 316 (460)
T KOG0285|consen 248 D-VLVTGGRDSTIRVWDIRTR------ASVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKT---MITLT 316 (460)
T ss_pred e-eEEecCCcceEEEeeeccc------ceEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCce---eEeee
Confidence 8 8999999999999999987 46889999999999999999875 677999999999999999984 88888
Q ss_pred ccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480 271 AHQSEVGVSILNASFRL--SHEDTCTCTHRH 299 (325)
Q Consensus 271 ~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~ 299 (325)
.|+..|.+++.+|...+ +++.| .++.|+
T Consensus 317 ~hkksvral~lhP~e~~fASas~d-nik~w~ 346 (460)
T KOG0285|consen 317 HHKKSVRALCLHPKENLFASASPD-NIKQWK 346 (460)
T ss_pred cccceeeEEecCCchhhhhccCCc-cceecc
Confidence 99999999999997654 44444 344444
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.8e-24 Score=174.46 Aligned_cols=223 Identities=17% Similarity=0.181 Sum_probs=180.4
Q ss_pred hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA 96 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 96 (325)
.+.+||+|+..+..+...|-.|... +.++.|.-.+. +++..... . .+..|++.
T Consensus 128 ~d~tikv~D~~tg~~e~~LrGHt~s--v~di~~~a~Gk-----------~l~tcSsD--l--~~~LWd~~---------- 180 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLRGHTDS--VFDISFDASGK-----------YLATCSSD--L--SAKLWDFD---------- 180 (406)
T ss_pred CCceEEEEEccchhhhhhhhccccc--eeEEEEecCcc-----------EEEecCCc--c--chhheeHH----------
Confidence 4678999999999998888888877 66666666552 22222111 1 13333331
Q ss_pred CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480 97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG 176 (325)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 176 (325)
...-.+...++|...|.++.|-|-| ..+++++.|.+|+.|++.. + ..+.++.+
T Consensus 181 ----------------~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~t--------g--~cv~t~~~ 233 (406)
T KOG0295|consen 181 ----------------TFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDT--------G--YCVKTFPG 233 (406)
T ss_pred ----------------HHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEeccc--------c--eeEEeccC
Confidence 1111112346799999999999998 7999999999999999998 3 44788999
Q ss_pred CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC--------------CCcE
Q 020480 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR--------------HEYL 242 (325)
Q Consensus 177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--------------~~~~ 242 (325)
|...|..++.+.+|. ++++|+.|.++++|-+.+. .+...+..|.-.|.+++|.|. +..+
T Consensus 234 h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~ 306 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATK------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQV 306 (406)
T ss_pred chHhEEEEEecCCee-EEEecCCCceEEEEEeccc------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccE
Confidence 999999999999999 9999999999999999876 566778899999999999873 1248
Q ss_pred EEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480 243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 243 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
+++++.|++|++||+.++.+ +.++.+|...|..++|+|.|++ ++.+|+++++|+++..
T Consensus 307 l~s~SrDktIk~wdv~tg~c---L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMC---LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred EEeecccceEEEEeccCCeE---EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 99999999999999999996 9999999999999999999996 8999999999998654
No 33
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=1.3e-23 Score=173.68 Aligned_cols=241 Identities=17% Similarity=0.214 Sum_probs=182.6
Q ss_pred hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
+..++...|||.+...... .+..|.. |..+++|.--.... ..++.++. +..|+.|.++.+..
T Consensus 120 tgsYDg~~riWd~~Gk~~~-~~~Ght~--~ik~v~~v~~n~~~-------~~fvsas~-----Dqtl~Lw~~~~~~~--- 181 (423)
T KOG0313|consen 120 TGSYDGTSRIWDLKGKSIK-TIVGHTG--PIKSVAWVIKNSSS-------CLFVSASM-----DQTLRLWKWNVGEN--- 181 (423)
T ss_pred EeecCCeeEEEecCCceEE-EEecCCc--ceeeeEEEecCCcc-------ceEEEecC-----CceEEEEEecCchh---
Confidence 4567889999998775433 4455554 47789998765533 23444443 34788888864411
Q ss_pred cccCCCCcccCCCCCCCCCCCceEEE-EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCC------C----
Q 020480 94 NDARHYDDDRSDFGGFGCANGKVQII-QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSK------P---- 162 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~------~---- 162 (325)
+.+.. ...+|...|-+++..+++ ..+++|+.|.+|.+|+....... .
T Consensus 182 ---------------------~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 182 ---------------------KVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred ---------------------hhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhh
Confidence 11111 123899999999999999 79999999999999993321110 0
Q ss_pred -----CCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeec
Q 020480 163 -----PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL 237 (325)
Q Consensus 163 -----~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 237 (325)
+..+...|+.++.||+.+|.++.|++. ..+++++.|.+|+.||+.++.. ...+.+ +..+++++.+|
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~------~~~~~~-~ksl~~i~~~~ 310 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGL------KSTLTT-NKSLNCISYSP 310 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccc------eeeeec-CcceeEeeccc
Confidence 023456778899999999999999983 3799999999999999998843 444443 45689999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecceee
Q 020480 238 RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 238 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~~~ 304 (325)
.. .+||+|+.|..|++||.|++.-..+.+++.+|+..|.++.|+|...+ +++.|+++++||+|...
T Consensus 311 ~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 311 LS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred cc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 75 79999999999999999988654456788999999999999998774 99999999999998754
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=166.75 Aligned_cols=219 Identities=20% Similarity=0.229 Sum_probs=179.4
Q ss_pred hHHHHhhhHhcC-hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480 17 INEEYKIWKKNT-PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND 95 (325)
Q Consensus 17 ~~~~~~iw~~~~-~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 95 (325)
.+-.+++|+... -.+-..++.|... +-++.|.|-+.. + .+...++.|++|+++-
T Consensus 170 sDl~~~LWd~~~~~~c~ks~~gh~h~--vS~V~f~P~gd~----------i-----lS~srD~tik~We~~t-------- 224 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFFRCIKSLIGHEHG--VSSVFFLPLGDH----------I-----LSCSRDNTIKAWECDT-------- 224 (406)
T ss_pred CccchhheeHHHHHHHHHHhcCcccc--eeeEEEEecCCe----------e-----eecccccceeEEeccc--------
Confidence 344489998876 4455666777666 778999997642 2 2233456788887751
Q ss_pred cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480 96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR 175 (325)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 175 (325)
-.......+|...|.-++.+.+| .++|+|+.|.+|++|-+.. ..+ ...++
T Consensus 225 -------------------g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t--------~~~--k~~lR 274 (406)
T KOG0295|consen 225 -------------------GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVAT--------KQC--KAELR 274 (406)
T ss_pred -------------------ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEecc--------chh--hhhhh
Confidence 23444566899999999999999 7999999999999999987 323 34577
Q ss_pred cCCCceEEEEecCCC--------------CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCc
Q 020480 176 GHSTEGYGLSWSKFK--------------EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241 (325)
Q Consensus 176 ~h~~~v~~l~~~p~~--------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 241 (325)
.|.-+|-+++|.|.. ...+.+++.|++|++||+.++ .++.++.+|.+.|..++|+|.| .
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg------~cL~tL~ghdnwVr~~af~p~G-k 347 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG------MCLFTLVGHDNWVRGVAFSPGG-K 347 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC------eEEEEEecccceeeeeEEcCCC-e
Confidence 899999999998752 138999999999999999998 6899999999999999999987 6
Q ss_pred EEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
+|+++.+|+++++||+++.++ +..+.+|..-|++++|+.+..+ +|+-|.++++|.-
T Consensus 348 yi~ScaDDktlrvwdl~~~~c---mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 348 YILSCADDKTLRVWDLKNLQC---MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEEecCCcEEEEEecccee---eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999997 8888899999999999987764 8999999999964
No 35
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=2.6e-23 Score=178.08 Aligned_cols=197 Identities=17% Similarity=0.142 Sum_probs=149.8
Q ss_pred EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC---------------------------------
Q 020480 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP--------------------------------- 163 (325)
Q Consensus 117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~--------------------------------- 163 (325)
..++..+|...|.++++.|.| -.|++|+.|..|++||+.......+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred ceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 344556788999999999999 6999999999999999987533221
Q ss_pred ----------------CCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCC
Q 020480 164 ----------------LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE 227 (325)
Q Consensus 164 ----------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 227 (325)
.+.........+||...+++.+|+|.....|+|++.||++++||+...+............+..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 0111111223367999999999999999899999999999999998765321110111122344
Q ss_pred ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC--CeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS--EVGVSILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 228 ~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
-.++.++|+|++ ..||+|+.||+|.+|+.+.......+..-.+|.. .|+||+|+++|.+ +-|.|.+.++|++|.+
T Consensus 318 v~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 318 VPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 578899999998 5899999999999999977654334455578877 9999999999985 8899999999999887
Q ss_pred e----------eccCeeEEEee
Q 020480 304 L----------YKFPFFVLVFP 315 (325)
Q Consensus 304 ~----------~~~~~~~~~~~ 315 (325)
. ..||.+.+||.
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ccchhhhcCCCccCCCCccccC
Confidence 5 45777777765
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.8e-22 Score=160.26 Aligned_cols=172 Identities=19% Similarity=0.265 Sum_probs=143.6
Q ss_pred EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCCCCeEE
Q 020480 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLL 195 (325)
Q Consensus 117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~ 195 (325)
.+...-+|++.+..++|+|-.+.+||+|+.|..|++|+.... ........+ .+|+..|.+++|+|.++ +|+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------~s~~ck~vld~~hkrsVRsvAwsp~g~-~La 77 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------DSWTCKTVLDDGHKRSVRSVAWSPHGR-YLA 77 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------CcEEEEEeccccchheeeeeeecCCCc-EEE
Confidence 344456799999999999972369999999999999998841 111111122 37999999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
+||.|.++.||.-..+.. .++..+.+|.+.|-+++|+++| ++||+|+.|.+|-||.+........+..++.|...
T Consensus 78 ~aSFD~t~~Iw~k~~~ef----ecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGEF----ECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EeeccceEEEeecCCCce----eEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 999999999998775544 6788999999999999999997 79999999999999999866655567788999999
Q ss_pred eeEEEeCCCCC--ccCCCCceEEeeecc
Q 020480 276 VGVSILNASFR--LSHEDTCTCTHRHSR 301 (325)
Q Consensus 276 v~~i~~~p~~~--~~~~~d~~~~~~~~~ 301 (325)
|..+.|+|..- +++|+|.++++|.-.
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeec
Confidence 99999999544 499999999998543
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=3.4e-22 Score=178.17 Aligned_cols=182 Identities=19% Similarity=0.208 Sum_probs=149.6
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
+..+|...+++++++|+| .++|+|+.||.|+|||... .....++..|++.|+.+.|+..++ .+++++.
T Consensus 345 KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S----------gfC~vTFteHts~Vt~v~f~~~g~-~llssSL 412 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS----------GFCFVTFTEHTSGVTAVQFTARGN-VLLSSSL 412 (893)
T ss_pred eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC----------ceEEEEeccCCCceEEEEEEecCC-EEEEeec
Confidence 456899999999999999 7999999999999999987 334778999999999999999998 8999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecC-CccEEEEEeecCCCcEEEEEecCCc-EEEEEccCCCCCCCeeEeeccCCCee
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
||+|+.||+... ...++|... .....+++-.|.|. ++++|+.|.. |.+|++.+++. +-.+.+|.+||.
T Consensus 413 DGtVRAwDlkRY------rNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGql---lDiLsGHEgPVs 482 (893)
T KOG0291|consen 413 DGTVRAWDLKRY------RNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQL---LDILSGHEGPVS 482 (893)
T ss_pred CCeEEeeeeccc------ceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCee---eehhcCCCCcce
Confidence 999999999876 346666543 34567888889884 6667776654 99999999994 888899999999
Q ss_pred EEEeCCCCCc--cCCCCceEEeeeccee-----eeccCeeEEEeecCCCcccc
Q 020480 278 VSILNASFRL--SHEDTCTCTHRHSRYL-----LYKFPFFVLVFPLFPSLQHY 323 (325)
Q Consensus 278 ~i~~~p~~~~--~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 323 (325)
+++|+|.|.. +++.|.++|+|++-.. .-..+..++.+...|++...
T Consensus 483 ~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 483 GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKEL 535 (893)
T ss_pred eeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeE
Confidence 9999999985 9999999999986433 12344556666666776543
No 38
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.7e-23 Score=187.52 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=139.0
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCC---------------------------C-CC-----------
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS---------------------------K-PP----------- 163 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~---------------------------~-~~----------- 163 (325)
+|.+.|.++.|+++| ++||+||.||.|+||.+...+. . ..
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 599999999999999 8999999999999998866100 0 00
Q ss_pred -----------CCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEE
Q 020480 164 -----------LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232 (325)
Q Consensus 164 -----------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (325)
..-..+|++.+.||++.|.+|.|+.++ +|++++.|.+|++|++... .|+..|. |...|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~------~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRK------ECLKVFS-HNDFVTC 414 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCc------ceeeEEe-cCCeeEE
Confidence 001234567778999999999999764 7999999999999999865 5777776 9999999
Q ss_pred EEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 233 v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
|+|+|.+.++|++|+-||.||||++...+ +........-|++++|.|+|+. .|+..|.|++++..-.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCe----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 99999888999999999999999998877 4444445688999999999994 8999999999876443
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=181.76 Aligned_cols=223 Identities=22% Similarity=0.282 Sum_probs=173.9
Q ss_pred hHHHHhhhHhcChh--HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480 17 INEEYKIWKKNTPF--LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN 94 (325)
Q Consensus 17 ~~~~~~iw~~~~~~--~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 94 (325)
-+..+++|+..... +-..+..|... +..++|+|++. .++.++. +..|.||++.
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~--v~~~~fs~d~~----------~l~s~s~-----D~tiriwd~~-------- 233 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRG--VSDVAFSPDGS----------YLLSGSD-----DKTLRIWDLK-------- 233 (456)
T ss_pred CCCcEEEeecccccchhhccccccccc--eeeeEECCCCc----------EEEEecC-----CceEEEeecc--------
Confidence 45678888884444 44444566655 88999999984 4444443 3478888772
Q ss_pred ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480 95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL 174 (325)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 174 (325)
.+........+|...|++++|+|++ +++++|+.|++|++||++. .+....+
T Consensus 234 ------------------~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~----------~~~~~~l 284 (456)
T KOG0266|consen 234 ------------------DDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT----------GECVRKL 284 (456)
T ss_pred ------------------CCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC----------CeEEEee
Confidence 1112233345899999999999999 8999999999999999987 4668889
Q ss_pred ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCcc--EEEEEeecCCCcEEEEEecCCcE
Q 020480 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLRHEYLFGSVGDDQYL 252 (325)
Q Consensus 175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~s~~~dg~i 252 (325)
.+|.+.|++++|++++. +|++++.|+.|++||+.++... +...+..+... +++++|+|++ .++++++.|+.+
T Consensus 285 ~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~ 358 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTL 358 (456)
T ss_pred eccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCC-cEEEEecCCCeE
Confidence 99999999999999999 8999999999999999988421 34455555544 9999999997 689999999999
Q ss_pred EEEEccCCCCCCCeeEeeccCCCe---eEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 253 LIWDLRTPSVSKPVQSVVAHQSEV---GVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 253 ~iwd~~~~~~~~~~~~~~~h~~~v---~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
++||++...+ +..+.+|...+ .+...++.+++ +++.|+.+.+|+...
T Consensus 359 ~~w~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 359 KLWDLRSGKS---VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred EEEEccCCcc---eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 9999999885 77777776643 34444666774 899999999998763
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=3.1e-22 Score=157.11 Aligned_cols=167 Identities=19% Similarity=0.321 Sum_probs=140.9
Q ss_pred EEEEeccC-CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480 118 IIQQINHD-GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (325)
Q Consensus 118 ~~~~~~h~-~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 196 (325)
+.+.+.|+ +.|+++...|++ ..||+|+. ..|++||+++ ....|+.++.+|+..|+++.|..+|. +++|
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S--------~np~Pv~t~e~h~kNVtaVgF~~dgr-WMyT 100 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNS--------NNPNPVATFEGHTKNVTAVGFQCDGR-WMYT 100 (311)
T ss_pred EEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccC--------CCCCceeEEeccCCceEEEEEeecCe-EEEe
Confidence 44677775 789999999998 68888764 5899999998 55678999999999999999999999 9999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC--------------
Q 020480 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-------------- 262 (325)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-------------- 262 (325)
|+.||+++|||+|.. .+.+.+ .|.++|+++..+|+. ..|++|..+|.|++||++...+
T Consensus 101 gseDgt~kIWdlR~~------~~qR~~-~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSL------SCQRNY-QHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS 172 (311)
T ss_pred cCCCceEEEEeccCc------ccchhc-cCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence 999999999999984 334444 467999999999974 6888999999999999987421
Q ss_pred --------------------------------CCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480 263 --------------------------------SKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 263 --------------------------------~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
..|+..+++|.+.+....++|++++ ++|.|.++++|....+
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 2456677888999999999999996 8899999999987665
No 41
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.6e-22 Score=170.01 Aligned_cols=183 Identities=22% Similarity=0.246 Sum_probs=152.2
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
..+|+.+|..+.|+|++...+++|+.|+.+++||+.+ .. ....+.+|++.|.+.+|+|....+++||+.|
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~--------a~--v~~~l~~htDYVR~g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST--------AY--VQAELSGHTDYVRCGDISPANDHIVVTGSYD 175 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC--------cE--EEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence 4469999999999999888999999999999999998 22 3557889999999999999988899999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
|.|++||++.... .+..+ .|..+|..+.+-|.| .+||+++ ...+++||+-++.. .+.....|...|+|++
T Consensus 176 g~vrl~DtR~~~~-----~v~el-nhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~q--ll~~~~~H~KtVTcL~ 245 (487)
T KOG0310|consen 176 GKVRLWDTRSLTS-----RVVEL-NHGCPVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQ--LLTSMFNHNKTVTCLR 245 (487)
T ss_pred ceEEEEEeccCCc-----eeEEe-cCCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCce--ehhhhhcccceEEEEE
Confidence 9999999997631 23343 488999999999987 5787777 46799999997765 4555555999999999
Q ss_pred eCCCCC--ccCCCCceEEeeecce----eeeccCeeEEEeecCCCcccc
Q 020480 281 LNASFR--LSHEDTCTCTHRHSRY----LLYKFPFFVLVFPLFPSLQHY 323 (325)
Q Consensus 281 ~~p~~~--~~~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 323 (325)
+..++. +++|.|+.++++++.. ..|+||--.+.+.++|+-++.
T Consensus 246 l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 246 LASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTV 294 (487)
T ss_pred eecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceE
Confidence 998765 5999999999998543 357888877888888877664
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.7e-22 Score=156.28 Aligned_cols=178 Identities=18% Similarity=0.189 Sum_probs=156.1
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
....-.++++|.+++|+-+| ++.++|+.|.+|++|+... ...++++.+|..+|.+++.+.++. .|++|
T Consensus 10 ~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~r----------g~liktYsghG~EVlD~~~s~Dns-kf~s~ 77 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLR----------GALIKTYSGHGHEVLDAALSSDNS-KFASC 77 (307)
T ss_pred ceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccc----------cceeeeecCCCceeeecccccccc-ccccC
Confidence 33345699999999999999 7999999999999999876 455888999999999999999988 89999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
+.|..|.+||+.++ +..+.+.+|.+.|+.++|+... .++++|+-|.++++||.|+.. .+|++.+......|.
T Consensus 78 GgDk~v~vwDV~TG------kv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTG------KVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVS 149 (307)
T ss_pred CCCceEEEEEcccC------eeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCC-CCccchhhhhcCcee
Confidence 99999999999998 5688999999999999999875 799999999999999999877 468999988889999
Q ss_pred EEEeCCCCCccCCCCceEEeeecceee-----eccCeeEEEee
Q 020480 278 VSILNASFRLSHEDTCTCTHRHSRYLL-----YKFPFFVLVFP 315 (325)
Q Consensus 278 ~i~~~p~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~ 315 (325)
+|..+.+..+.|+-||+++.+++|.=. -.-|+.+++|.
T Consensus 150 Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s 192 (307)
T KOG0316|consen 150 SIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFS 192 (307)
T ss_pred EEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEec
Confidence 999999988899999999999987632 23566666654
No 43
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=1.6e-21 Score=177.73 Aligned_cols=171 Identities=14% Similarity=0.197 Sum_probs=132.7
Q ss_pred EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
....+|.+.|.+++|+|...++||+|+.||.|++|++........ ....++..+.+|...|.+++|+|++..++++++
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 345679999999999997557999999999999999975211000 011345678899999999999999886678999
Q ss_pred CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV 278 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 278 (325)
.|+.|+|||++.+. ....+. |...|.+++|+|+| .+|++++.|+.|+|||+|++.. +..+.+|.+.+.+
T Consensus 146 ~DgtIrIWDl~tg~------~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s 214 (568)
T PTZ00420 146 FDSFVNIWDIENEK------RAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNT 214 (568)
T ss_pred CCCeEEEEECCCCc------EEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcE---EEEEecccCCcee
Confidence 99999999999763 233443 55789999999997 6889999999999999999874 7788889876543
Q ss_pred E-----EeCCCCCc--cCCCC----ceEEeeecce
Q 020480 279 S-----ILNASFRL--SHEDT----CTCTHRHSRY 302 (325)
Q Consensus 279 i-----~~~p~~~~--~~~~d----~~~~~~~~~~ 302 (325)
. .|++++.+ ++|.+ .++++|+++.
T Consensus 215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 3 34566653 55555 3799999885
No 44
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=5.7e-21 Score=173.13 Aligned_cols=212 Identities=17% Similarity=0.235 Sum_probs=153.3
Q ss_pred hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCC
Q 020480 35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG 114 (325)
Q Consensus 35 ~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (325)
+..|.. ++++++|.|... ..++.|+. +..|++|++.-. ... . ..
T Consensus 71 l~GH~~--~V~~v~fsP~d~---------~~LaSgS~-----DgtIkIWdi~~~--~~~-------~-----------~~ 114 (493)
T PTZ00421 71 LLGQEG--PIIDVAFNPFDP---------QKLFTASE-----DGTIMGWGIPEE--GLT-------Q-----------NI 114 (493)
T ss_pred EeCCCC--CEEEEEEcCCCC---------CEEEEEeC-----CCEEEEEecCCC--ccc-------c-----------cc
Confidence 444543 488999999432 24555543 347889877311 000 0 00
Q ss_pred ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480 115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (325)
Q Consensus 115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 194 (325)
.-.+....+|...|.+++|+|.+.++|++|+.|+.|+|||+.. ...+..+.+|...|.+++|+|++. +|
T Consensus 115 ~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t----------g~~~~~l~~h~~~V~sla~spdG~-lL 183 (493)
T PTZ00421 115 SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER----------GKAVEVIKCHSDQITSLEWNLDGS-LL 183 (493)
T ss_pred CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC----------CeEEEEEcCCCCceEEEEEECCCC-EE
Confidence 0112234679999999999998767999999999999999987 344667889999999999999998 89
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCcc-EEEEEeecCCCcEEEEEe----cCCcEEEEEccCCCCCCCeeEe
Q 020480 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV-VEDVAWHLRHEYLFGSVG----DDQYLLIWDLRTPSVSKPVQSV 269 (325)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~ 269 (325)
++++.|+.|++||++++ ..+..+.+|... +..+.|.+++. .+++++ .|+.|++||++.... ++...
T Consensus 184 atgs~Dg~IrIwD~rsg------~~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~ 254 (493)
T PTZ00421 184 CTTSKDKKLNIIDPRDG------TIVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMAS--PYSTV 254 (493)
T ss_pred EEecCCCEEEEEECCCC------cEEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCC--ceeEe
Confidence 99999999999999986 346677778754 45678888764 454443 589999999998664 45544
Q ss_pred ecc-CCCeeEEEeCCCCCc--cCC-CCceEEeeecce
Q 020480 270 VAH-QSEVGVSILNASFRL--SHE-DTCTCTHRHSRY 302 (325)
Q Consensus 270 ~~h-~~~v~~i~~~p~~~~--~~~-~d~~~~~~~~~~ 302 (325)
..+ ...+....|++++.+ +++ .|+.+++|+++.
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 333 345666778998874 454 699999998764
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=1.9e-23 Score=177.53 Aligned_cols=169 Identities=20% Similarity=0.259 Sum_probs=147.4
Q ss_pred CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 193 (325)
|+-......+|+..|+++.|.|...++|++|+.|+.|+||++.. ....++++.+|..+|.+++|+.++. .
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------~~~~lrtf~gH~k~Vrd~~~s~~g~-~ 272 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------DRRCLRTFKGHRKPVRDASFNNCGT-S 272 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------CcceehhhhcchhhhhhhhccccCC-e
Confidence 33334445679999999999995448999999999999999975 2355888999999999999999999 7
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
|+|++.|+.|++||++++ .++..+. ....++++.|+|+++++|++|+.|+.|+.||+|+++. ++.+..|-
T Consensus 273 fLS~sfD~~lKlwDtETG------~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---vqeYd~hL 342 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETG------QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---VQEYDRHL 342 (503)
T ss_pred eeeeecceeeeeeccccc------eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH---HHHHHhhh
Confidence 999999999999999998 4555554 3456889999999989999999999999999999995 89999999
Q ss_pred CCeeEEEeCCCCC--ccCCCCceEEeeecce
Q 020480 274 SEVGVSILNASFR--LSHEDTCTCTHRHSRY 302 (325)
Q Consensus 274 ~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~ 302 (325)
+.|..|.|-++|+ ++.++|+++++|+.++
T Consensus 343 g~i~~i~F~~~g~rFissSDdks~riWe~~~ 373 (503)
T KOG0282|consen 343 GAILDITFVDEGRRFISSSDDKSVRIWENRI 373 (503)
T ss_pred hheeeeEEccCCceEeeeccCccEEEEEcCC
Confidence 9999999999998 4899999999998765
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=1.1e-22 Score=180.90 Aligned_cols=168 Identities=16% Similarity=0.188 Sum_probs=146.1
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE----EEecCCCceEEEEecCCCCCeEE
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL----RLRGHSTEGYGLSWSKFKEGHLL 195 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~p~~~~~l~ 195 (325)
+-.+|...|.+++++.-+..+|++++.|+++++|++...... ...+.. +...|...|.+++.+|+.. +++
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~-----~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiA 479 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET-----AFPIVLTCRYTERAHDKDINCVAIAPNDK-LIA 479 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc-----cccceehhhHHHHhhcccccceEecCCCc-eEE
Confidence 456799999999999888899999999999999999861111 011122 3357999999999999998 999
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
|||.|.+.+||++... .....+.+|+..|+++.|+|.+ .++||+|.|++|+||.+.+..+ +.++.+|.+.
T Consensus 480 T~SqDktaKiW~le~~------~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSC---lkT~eGH~~a 549 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQL------RLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSC---LKTFEGHTSA 549 (775)
T ss_pred ecccccceeeecccCc------eEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEecccee---eeeecCccce
Confidence 9999999999999955 5688999999999999999986 6999999999999999999997 9999999999
Q ss_pred eeEEEeCCCCC--ccCCCCceEEeeeccee
Q 020480 276 VGVSILNASFR--LSHEDTCTCTHRHSRYL 303 (325)
Q Consensus 276 v~~i~~~p~~~--~~~~~d~~~~~~~~~~~ 303 (325)
|..+.|-.+|+ ++++.||.+++|++..-
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 99999998887 49999999999987553
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.3e-22 Score=178.50 Aligned_cols=230 Identities=16% Similarity=0.221 Sum_probs=186.6
Q ss_pred hhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN 94 (325)
Q Consensus 15 ~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 94 (325)
+.-+..|++|+-+-..|.+-+..|..+ +.-++|.|..+ .++ +++.+..|++|+..
T Consensus 27 slHsG~IQlWDYRM~tli~rFdeHdGp--VRgv~FH~~qp----------lFV-----SGGDDykIkVWnYk-------- 81 (1202)
T KOG0292|consen 27 SLHSGVIQLWDYRMGTLIDRFDEHDGP--VRGVDFHPTQP----------LFV-----SGGDDYKIKVWNYK-------- 81 (1202)
T ss_pred eecCceeeeehhhhhhHHhhhhccCCc--cceeeecCCCC----------eEE-----ecCCccEEEEEecc--------
Confidence 344567899999999999999888755 99999999875 222 33445688899773
Q ss_pred ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480 95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL 174 (325)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 174 (325)
.+--+....+|-..|..+.|++.-+ .|++++.|.+|+||+..+ .+.+..+
T Consensus 82 -------------------~rrclftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqs----------r~~iavl 131 (1202)
T KOG0292|consen 82 -------------------TRRCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQS----------RKCIAVL 131 (1202)
T ss_pred -------------------cceehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccC----------CceEEEE
Confidence 1223345678999999999999874 899999999999999987 4568889
Q ss_pred ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC-----------------------cccceEeeecCCccEE
Q 020480 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK-----------------------SLEAMQIFKVHEGVVE 231 (325)
Q Consensus 175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~-----------------------~~~~~~~~~~~~~~v~ 231 (325)
.||...|.+..|+|... +++|+|.|.+|||||+...++.. .....+.+.+|...|+
T Consensus 132 tGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN 210 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN 210 (1202)
T ss_pred ecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccc
Confidence 99999999999999888 89999999999999986543210 0112345689999999
Q ss_pred EEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecce
Q 020480 232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSRY 302 (325)
Q Consensus 232 ~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~ 302 (325)
-++|+|.-+ +|+||++|..|++|.+...+.+ .+-+..+|...|.++-|+|+.. ++.|.|+++++||+..
T Consensus 211 waAfhpTlp-liVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 211 WAAFHPTLP-LIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred eEEecCCcc-eEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 999999875 9999999999999999876643 4556689999999999999655 4999999999998743
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.8e-21 Score=168.36 Aligned_cols=196 Identities=19% Similarity=0.266 Sum_probs=165.5
Q ss_pred ceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEec
Q 020480 44 SLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQIN 123 (325)
Q Consensus 44 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (325)
+=++++.|..+ -++.+-..+ .+.||+.+ ....++.+.
T Consensus 16 VKsVd~HPteP----------w~la~LynG-----~V~IWnye----------------------------tqtmVksfe 52 (794)
T KOG0276|consen 16 VKSVDFHPTEP----------WILAALYNG-----DVQIWNYE----------------------------TQTMVKSFE 52 (794)
T ss_pred eeeeecCCCCc----------eEEEeeecC-----eeEEEecc----------------------------cceeeeeee
Confidence 56889999764 344555433 57777663 122333343
Q ss_pred -cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 124 -HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 124 -h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
..-+|.+..|-+.. +.+++|+.|..|+||++.+ ...+..+..|.+.|.+++.+|..+ +++|+|.|-.
T Consensus 53 V~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt----------~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~ 120 (794)
T KOG0276|consen 53 VSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT----------GEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMT 120 (794)
T ss_pred ecccchhhheeeecc-ceEEEecCCceEEEEeccc----------ceeeEEeeccccceeeeeecCCCC-eEEecCCccE
Confidence 45688888998876 7999999999999999988 566889999999999999999999 8999999999
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~ 282 (325)
|++||-+..- .+.++|.+|+..|.+++|+|.+.+.|||++-|++|+||.+.+.. +..++.+|...|+||.|-
T Consensus 121 iKlW~we~~w-----a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---~nfTl~gHekGVN~Vdyy 192 (794)
T KOG0276|consen 121 IKLWDWENEW-----ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---PNFTLEGHEKGVNCVDYY 192 (794)
T ss_pred EEEeeccCce-----eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC---CceeeeccccCcceEEec
Confidence 9999998652 57889999999999999999999999999999999999999887 588999999999999999
Q ss_pred CCCC----ccCCCCceEEeeecce
Q 020480 283 ASFR----LSHEDTCTCTHRHSRY 302 (325)
Q Consensus 283 p~~~----~~~~~d~~~~~~~~~~ 302 (325)
+-|. ++|++|.++++||...
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred cCCCcceEEecCCCceEEEeecch
Confidence 8773 4999999999998744
No 49
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=1.3e-20 Score=171.93 Aligned_cols=228 Identities=11% Similarity=0.134 Sum_probs=153.9
Q ss_pred HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR 97 (325)
Q Consensus 18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 97 (325)
...+++|+.........+..|.. ++++++|.|+.. ..++.|+. +..|.+|++.-. ....
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~--~V~~lafsP~~~---------~lLASgS~-----DgtIrIWDi~t~--~~~~--- 111 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTS--SILDLQFNPCFS---------EILASGSE-----DLTIRVWEIPHN--DESV--- 111 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCC--CEEEEEEcCCCC---------CEEEEEeC-----CCeEEEEECCCC--Cccc---
Confidence 34567776544333334555553 599999999742 24555543 347889876311 0000
Q ss_pred CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480 98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH 177 (325)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h 177 (325)
. .+ .. ......+|...|.+++|+|.+..++++|+.|+.|++||++. ......+. |
T Consensus 112 ----~--~i-----~~---p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t----------g~~~~~i~-~ 166 (568)
T PTZ00420 112 ----K--EI-----KD---PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN----------EKRAFQIN-M 166 (568)
T ss_pred ----c--cc-----cc---ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC----------CcEEEEEe-c
Confidence 0 00 01 11224579999999999999866778999999999999987 22344454 5
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEE-----EeecCCCcEEEEEecCC--
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV-----AWHLRHEYLFGSVGDDQ-- 250 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v-----~~~p~~~~~l~s~~~dg-- 250 (325)
...|.+++|+|+|. +|++++.|+.|+|||++++ ..+..+.+|.+.+... .|++++ .++++++.|+
T Consensus 167 ~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg------~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~ 238 (568)
T PTZ00420 167 PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ------EIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNN 238 (568)
T ss_pred CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC------cEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCC
Confidence 67899999999998 8999999999999999987 4567788888765433 345765 5777777664
Q ss_pred --cEEEEEccCCCCCCCeeEee--ccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480 251 --YLLIWDLRTPSVSKPVQSVV--AHQSEVGVSILNASFRL--SHEDTCTCTHRHSR 301 (325)
Q Consensus 251 --~i~iwd~~~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~ 301 (325)
.|+|||++.... ++.... .+.+.+...-..++|.+ +|+.|+++++|++.
T Consensus 239 ~R~VkLWDlr~~~~--pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 239 MREMKLWDLKNTTS--ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ccEEEEEECCCCCC--ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 799999997543 455543 23333333334555764 78899999999874
No 50
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.1e-21 Score=175.54 Aligned_cols=165 Identities=18% Similarity=0.272 Sum_probs=141.7
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
...|...|+++.|++..+++|++|+.||.|++||++. .....++.+....|.++.|+|...+.|+++...
T Consensus 129 f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~----------~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 129 FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS----------KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred hhhhccceeeeeeccCCccEEEecCCCceEEEEeeec----------ccccccccccchhhhceeeccCCCceEEEecCC
Confidence 4579999999999999999999999999999999997 344556777888999999999988899999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
|.+++||+|... .+...+.+|.+.|.++.|+|++ .+|||||.|+.|+|||+.+.+. .++.++. ...+|.+|+
T Consensus 199 G~lqlWDlRqp~-----r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVk 270 (839)
T KOG0269|consen 199 GYLQLWDLRQPD-----RCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVK 270 (839)
T ss_pred ceEEEeeccCch-----hHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeee
Confidence 999999999875 3677789999999999999965 7999999999999999987663 3556654 367999999
Q ss_pred eCCCCCc-----cCCCCceEEeeeccee
Q 020480 281 LNASFRL-----SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 281 ~~p~~~~-----~~~~d~~~~~~~~~~~ 303 (325)
|-|.... +-..|..+.+||++.-
T Consensus 271 WRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 271 WRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred eccCccchhhhhhccccceEEEEeeccc
Confidence 9998763 3456889999998764
No 51
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=4.3e-21 Score=158.82 Aligned_cols=167 Identities=20% Similarity=0.412 Sum_probs=136.9
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
..+|+..|..++|+|.....||+|+.||.|+|||++. +..++....+.|.+-|..|.|+...+ +|++|+.|
T Consensus 253 f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs--------~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~Dd 323 (440)
T KOG0302|consen 253 FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS--------GPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDD 323 (440)
T ss_pred ccccccchhhhccCCccCceEEeeecCceEEEEEecC--------CCccceeEeeccCCceeeEEccCCcc-eeeecCCC
Confidence 4569999999999998888999999999999999998 43444555589999999999999988 99999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-------------CCCee
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-------------SKPVQ 267 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~ 267 (325)
|+++|||+|.-+.. .++..|+-|..+|+++.|+|.....|++++.|..|.+||+....- .-|-+
T Consensus 324 Gt~~iwDLR~~~~~---~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQ 400 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSG---QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQ 400 (440)
T ss_pred ceEEEEEhhhccCC---CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCce
Confidence 99999999987655 678899999999999999998889999999999999999975321 01223
Q ss_pred Eeecc--CCCeeEEEeCCCCC---ccCCCCceEEeee
Q 020480 268 SVVAH--QSEVGVSILNASFR---LSHEDTCTCTHRH 299 (325)
Q Consensus 268 ~~~~h--~~~v~~i~~~p~~~---~~~~~d~~~~~~~ 299 (325)
.+.-| ...+..+.|+++-. ++.+.||.+.+..
T Consensus 401 LLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 401 LLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred eEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence 33445 34688899998643 3677777666543
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=1.3e-21 Score=158.28 Aligned_cols=165 Identities=21% Similarity=0.311 Sum_probs=134.0
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
..+.|..+|+++.|.|.. .+|++|+.|++|++||+... ..+..++.-....+|.++.|+|.|. +++.|..
T Consensus 167 TlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~--------saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTd 236 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKT--------SAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTD 236 (430)
T ss_pred ehhhccCcccceeecchh-heEEeccCCCeEEEEecccH--------HHHHHHHHhhccceeeeEeecCCCc-eEEEecC
Confidence 467899999999999987 79999999999999999872 1222222223456899999999999 8999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccC-CCee
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQ-SEVG 277 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~-~~v~ 277 (325)
..++++||+.+.+.- .+...-..|+..|+++.+++.+ ++.++|+.||.|++||--+.+| +.++ .+|. +.|.
T Consensus 237 Hp~~rlYdv~T~Qcf---vsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC---v~t~~~AH~gsevc 309 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCF---VSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC---VRTIGNAHGGSEVC 309 (430)
T ss_pred CCceeEEeccceeEe---eecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH---HHHHHhhcCCceee
Confidence 999999999986310 0111235689999999999997 6999999999999999999886 6666 4564 5799
Q ss_pred EEEeCCCCCc--cCCCCceEEeeecc
Q 020480 278 VSILNASFRL--SHEDTCTCTHRHSR 301 (325)
Q Consensus 278 ~i~~~p~~~~--~~~~d~~~~~~~~~ 301 (325)
+..|..+|++ +.|.|.++++|.+.
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeec
Confidence 9999999995 88899999999863
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=3.5e-21 Score=171.77 Aligned_cols=229 Identities=17% Similarity=0.230 Sum_probs=181.7
Q ss_pred HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR 97 (325)
Q Consensus 18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 97 (325)
+.++.+++.....+.+..-.|... .++++..|++.+ ++.|+ .++.+.+|++.+-.. ....
T Consensus 433 ~Gel~vfdlaS~~l~Eti~AHdga--IWsi~~~pD~~g----------~vT~s-----aDktVkfWdf~l~~~-~~gt-- 492 (888)
T KOG0306|consen 433 NGELQVFDLASASLVETIRAHDGA--IWSISLSPDNKG----------FVTGS-----ADKTVKFWDFKLVVS-VPGT-- 492 (888)
T ss_pred CCceEEEEeehhhhhhhhhccccc--eeeeeecCCCCc----------eEEec-----CCcEEEEEeEEEEec-cCcc--
Confidence 345555555555566666655444 777888887753 34443 345788888864311 0000
Q ss_pred CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480 98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH 177 (325)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h 177 (325)
....-+++..+.+.-+..|.|+++||++ .+||++--|.+|+||-+.+ .+...++.||
T Consensus 493 ------------~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDt----------lKFflsLYGH 549 (888)
T KOG0306|consen 493 ------------QKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDT----------LKFFLSLYGH 549 (888)
T ss_pred ------------cceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecc----------eeeeeeeccc
Confidence 0001233444566778999999999999 7999999999999999987 5656788999
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~ 257 (325)
.-+|.+++.+|++. +++|||.|..|++|-++-+ .|-..+-+|...|.++.|.|.. ..+.+||.|+.|+-||-
T Consensus 550 kLPV~smDIS~DSk-livTgSADKnVKiWGLdFG------DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 550 KLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFG------DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDG 621 (888)
T ss_pred ccceeEEeccCCcC-eEEeccCCCceEEeccccc------hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeech
Confidence 99999999999999 9999999999999999988 6778889999999999999975 78889999999999999
Q ss_pred cCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 258 RTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
..... ++.+.+|...|+|++.+|+|.+ ++|.|.++++|..
T Consensus 622 ~kFe~---iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 622 EKFEE---IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred hhhhh---heeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 88874 9999999999999999999985 8999999999964
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=1.3e-20 Score=182.85 Aligned_cols=225 Identities=14% Similarity=0.177 Sum_probs=168.1
Q ss_pred hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA 96 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 96 (325)
.+.++++|+.........+..|.. ++++++|.|... ..++.|+. +..+.+|++.-
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~~--~V~~l~~~p~~~---------~~L~Sgs~-----Dg~v~iWd~~~--------- 607 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHEK--RVWSIDYSSADP---------TLLASGSD-----DGSVKLWSINQ--------- 607 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCCC--CEEEEEEcCCCC---------CEEEEEcC-----CCEEEEEECCC---------
Confidence 477899999887655555555654 489999997432 24555543 34788887631
Q ss_pred CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480 97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG 176 (325)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 176 (325)
+. ....+.+...|.++.|++.+..+|++|+.||.|++||++. . ..++..+.+
T Consensus 608 -----------------~~--~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~--------~-~~~~~~~~~ 659 (793)
T PLN00181 608 -----------------GV--SIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN--------P-KLPLCTMIG 659 (793)
T ss_pred -----------------Cc--EEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC--------C-CccceEecC
Confidence 11 1223345568999999765448999999999999999976 1 224567789
Q ss_pred CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256 (325)
Q Consensus 177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd 256 (325)
|...|.++.|. ++. .+++++.|++|++||++.........++..+.+|...+.+++|+|++ .+||+|+.|+.|++|+
T Consensus 660 h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 660 HSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYH 736 (793)
T ss_pred CCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEE
Confidence 99999999997 455 79999999999999998643221224577889999999999999987 6999999999999999
Q ss_pred ccCCCCCCCeeE-------------eeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 257 LRTPSVSKPVQS-------------VVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 257 ~~~~~~~~~~~~-------------~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
...... +.. ...|...|.+++|+|++.. +++.++.+++|++
T Consensus 737 ~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 737 KAFPMP---VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCCc---eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 875531 211 1234567999999999874 8889999999975
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.3e-21 Score=174.66 Aligned_cols=164 Identities=20% Similarity=0.274 Sum_probs=142.9
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
+.-+|.|+|..++|+|+. .+|++|+.|-.|+||++.. .+.+.++.||-+.|..+.|++.-+ +++|+|.
T Consensus 46 rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~----------rrclftL~GHlDYVRt~~FHheyP-WIlSASD 113 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKT----------RRCLFTLLGHLDYVRTVFFHHEYP-WILSASD 113 (1202)
T ss_pred hhhccCCccceeeecCCC-CeEEecCCccEEEEEeccc----------ceehhhhccccceeEEeeccCCCc-eEEEccC
Confidence 345799999999999998 5999999999999999987 456889999999999999999999 9999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC--CC------------
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--KP------------ 265 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--~~------------ 265 (325)
|.+|+||+..+. .++..+.+|+..|.|.+|+|.. .+++|+|-|.+|||||+..-+.. .|
T Consensus 114 DQTIrIWNwqsr------~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~ 186 (1202)
T KOG0292|consen 114 DQTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG 186 (1202)
T ss_pred CCeEEEEeccCC------ceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence 999999999987 6799999999999999999975 59999999999999998642210 00
Q ss_pred ------------eeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 266 ------------VQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 266 ------------~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
-+.+.+|...|+-++|+|.-.+ +|++|..+++|...-
T Consensus 187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred chhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence 1345789999999999998775 999999999996543
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=157.03 Aligned_cols=172 Identities=14% Similarity=0.213 Sum_probs=127.5
Q ss_pred ceEEEE-EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCC
Q 020480 115 KVQIIQ-QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEG 192 (325)
Q Consensus 115 ~~~~~~-~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ 192 (325)
.+++.+ ..+|..+|..+.|+|+. +++++|+.+-.+.+||+.+ +.. ...+. +|...+.+.+|.|++.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~t--------gd~--~~~y~~~~~~S~~sc~W~pDg~- 325 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDT--------GDL--RHLYPSGLGFSVSSCAWCPDGF- 325 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCc--------chh--hhhcccCcCCCcceeEEccCCc-
Confidence 355443 45799999999999998 6888888888999999987 322 22222 3557899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCC----c---c------------------------------------------------
Q 020480 193 HLLSGSDDAQICLWDINAAPKNK----S---L------------------------------------------------ 217 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~----~---~------------------------------------------------ 217 (325)
.+++|+.|+.+..||+....... . +
T Consensus 326 ~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~ 405 (519)
T KOG0293|consen 326 RFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISK 405 (519)
T ss_pred eeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcC
Confidence 79999999999999987542110 0 0
Q ss_pred ----------------------cceEeeecCCc--cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480 218 ----------------------EAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 218 ----------------------~~~~~~~~~~~--~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
..++.+.+|+. .+..-||--.+..++|+|+.|+.|+||+.++++ ++..+.+|.
T Consensus 406 d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs 482 (519)
T KOG0293|consen 406 DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHS 482 (519)
T ss_pred CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---eeEeecCCc
Confidence 00111222222 122223333234689999999999999999998 699999999
Q ss_pred CCeeEEEeCCCCC---ccCCCCceEEeeecc
Q 020480 274 SEVGVSILNASFR---LSHEDTCTCTHRHSR 301 (325)
Q Consensus 274 ~~v~~i~~~p~~~---~~~~~d~~~~~~~~~ 301 (325)
..|++|+|+|... .++|+|+++|+|...
T Consensus 483 ~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 483 KTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999999999766 299999999999764
No 57
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=2.4e-20 Score=149.57 Aligned_cols=228 Identities=18% Similarity=0.302 Sum_probs=171.6
Q ss_pred hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCC
Q 020480 35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG 114 (325)
Q Consensus 35 ~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (325)
+..++.+||..+++|+..... ..++++|+... .-.|.+.|.++... .+
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~-------~~rla~gS~~E-e~~Nkvqiv~ld~~------------------------s~ 85 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDK-------KFRLAVGSFIE-EYNNKVQIVQLDED------------------------SG 85 (364)
T ss_pred EEEecCCCceeeeccccCCCc-------ceeEEEeeecc-ccCCeeEEEEEccC------------------------CC
Confidence 446678999999999965332 26789999854 45688888887511 11
Q ss_pred ceEEEEEeccCCCeeEEEecCCC----CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-----EEecCCCceEEEE
Q 020480 115 KVQIIQQINHDGEVNRARYMPQN----PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-----RLRGHSTEGYGLS 185 (325)
Q Consensus 115 ~~~~~~~~~h~~~v~~v~~~~~~----~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~ 185 (325)
.+.....+.|..+++.+.|.|+. +.+||+.+ -.+++|.+...... ..+.. +-..+..+++++.
T Consensus 86 e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~------~~~~~~L~~~kns~~~aPlTSFD 157 (364)
T KOG0290|consen 86 ELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESR------VELQSVLNNNKNSEFCAPLTSFD 157 (364)
T ss_pred ceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCc------eehhhhhccCcccccCCcccccc
Confidence 22222337899999999999975 45777743 47999998742111 11111 1224667999999
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC---
Q 020480 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV--- 262 (325)
Q Consensus 186 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--- 262 (325)
|+.-.++++.++|-|.++.|||+..+... .....+-+|...|..++|...+..+||++|.||++|+||+|..+.
T Consensus 158 Wne~dp~~igtSSiDTTCTiWdie~~~~~---~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI 234 (364)
T KOG0290|consen 158 WNEVDPNLIGTSSIDTTCTIWDIETGVSG---TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI 234 (364)
T ss_pred cccCCcceeEeecccCeEEEEEEeecccc---ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE
Confidence 99998889999999999999999986221 235567889999999999997778999999999999999997321
Q ss_pred ------------------------------------------CCCeeEeeccCCCeeEEEeCCCCC---ccCCCCceEEe
Q 020480 263 ------------------------------------------SKPVQSVVAHQSEVGVSILNASFR---LSHEDTCTCTH 297 (325)
Q Consensus 263 ------------------------------------------~~~~~~~~~h~~~v~~i~~~p~~~---~~~~~d~~~~~ 297 (325)
..++..+.+|++.|+.|+|.|+.. .++|+|..+-+
T Consensus 235 IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qali 314 (364)
T KOG0290|consen 235 IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALI 314 (364)
T ss_pred EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEE
Confidence 135666788999999999999876 39999999999
Q ss_pred eecceeee
Q 020480 298 RHSRYLLY 305 (325)
Q Consensus 298 ~~~~~~~~ 305 (325)
|++.....
T Consensus 315 WDl~q~~~ 322 (364)
T KOG0290|consen 315 WDLQQMPR 322 (364)
T ss_pred Eecccccc
Confidence 99876543
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.87 E-value=1.2e-21 Score=160.73 Aligned_cols=156 Identities=19% Similarity=0.275 Sum_probs=137.2
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
...+|++.|.|+.|.. ..+++|+.|.+|++||+.+ .+++.++-+|...|..+.|+. ++++|++.
T Consensus 232 ~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t----------ge~l~tlihHceaVLhlrf~n---g~mvtcSk 295 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT----------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSK 295 (499)
T ss_pred hhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC----------CchhhHHhhhcceeEEEEEeC---CEEEEecC
Confidence 3568999999999986 5899999999999999998 567888899999999999973 38999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
|.++.+||+.... .+.+.+.+.+|...|+.+.|+. .++++++.|.+|++|++.+.++ +.++.+|+..|-|+
T Consensus 296 DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~ef---vRtl~gHkRGIACl 366 (499)
T KOG0281|consen 296 DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEF---VRTLNGHKRGIACL 366 (499)
T ss_pred CceeEEEeccCch---HHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceee---ehhhhcccccceeh
Confidence 9999999998764 2356677889999999999973 5999999999999999999996 89999999999998
Q ss_pred EeCCCCCccCCCCceEEeeec
Q 020480 280 ILNASFRLSHEDTCTCTHRHS 300 (325)
Q Consensus 280 ~~~p~~~~~~~~d~~~~~~~~ 300 (325)
.+...-.++|+.|.++++|++
T Consensus 367 QYr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 367 QYRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred hccCeEEEecCCCceEEEEec
Confidence 887554459999999999986
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=5.7e-20 Score=178.32 Aligned_cols=162 Identities=19% Similarity=0.261 Sum_probs=133.8
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
+.+...|.+++|++....+||+|+.||.|++||+.. ...+..+.+|.+.|++++|+|....+|++|+.||
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg 598 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence 345678999999986557999999999999999986 3446678899999999999984444899999999
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL 281 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~ 281 (325)
.|++||++.+ .++..+..+ ..+.++.|++....+|++|+.||.|++||++.... ++..+.+|...|.++.|
T Consensus 599 ~v~iWd~~~~------~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h~~~V~~v~f 669 (793)
T PLN00181 599 SVKLWSINQG------VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHSKTVSYVRF 669 (793)
T ss_pred EEEEEECCCC------cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--cceEecCCCCCEEEEEE
Confidence 9999999876 345555544 57899999765457999999999999999997653 46777899999999999
Q ss_pred CCCCCc-cCCCCceEEeeecce
Q 020480 282 NASFRL-SHEDTCTCTHRHSRY 302 (325)
Q Consensus 282 ~p~~~~-~~~~d~~~~~~~~~~ 302 (325)
.+...+ +++.|+++++|+++.
T Consensus 670 ~~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 670 VDSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred eCCCEEEEEECCCEEEEEeCCC
Confidence 854444 889999999999863
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.86 E-value=5.2e-21 Score=150.42 Aligned_cols=216 Identities=17% Similarity=0.192 Sum_probs=165.2
Q ss_pred HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR 97 (325)
Q Consensus 18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 97 (325)
|=+-|+|+.-++ +.++.+....-+.+|+|..+.. .++.|.+.. -+.|++++-|
T Consensus 80 dftakvw~a~tg---delhsf~hkhivk~~af~~ds~----------~lltgg~ek-----llrvfdln~p--------- 132 (334)
T KOG0278|consen 80 DFTAKVWDAVTG---DELHSFEHKHIVKAVAFSQDSN----------YLLTGGQEK-----LLRVFDLNRP--------- 132 (334)
T ss_pred cchhhhhhhhhh---hhhhhhhhhheeeeEEecccch----------hhhccchHH-----HhhhhhccCC---------
Confidence 446789987665 3445544445578999999874 566666532 3445555433
Q ss_pred CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480 98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH 177 (325)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h 177 (325)
+-......+|++.|..+.|+... +.|++.+.|++|++||.++ ...+.++. .
T Consensus 133 -----------------~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rT----------gt~v~sL~-~ 183 (334)
T KOG0278|consen 133 -----------------KAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRT----------GTEVQSLE-F 183 (334)
T ss_pred -----------------CCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEecc----------CcEEEEEe-c
Confidence 22222346899999999999977 6777779999999999998 33355554 4
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~ 257 (325)
..+|+++..+++|. +++-...+.|..||...-. .+..+. -...|.+.+.+|+. .++++|+.|..++.||.
T Consensus 184 ~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~------~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 184 NSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFG------LLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDY 253 (334)
T ss_pred CCCCcceeeccCCC--EEEEecCceeEEecccccc------ceeecc-CccccccccccCCC-ceEEecCcceEEEEEec
Confidence 56899999999987 6666777899999998763 344443 34568899999986 79999999999999999
Q ss_pred cCCCCCCCeeEe-eccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 258 RTPSVSKPVQSV-VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 258 ~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
.++.. +..+ ++|.++|.||.|+|+|.+ +|+.||++++|+...
T Consensus 254 ~TgeE---i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 254 NTGEE---IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred cCCce---eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 99985 6664 899999999999999996 999999999998643
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=2.7e-22 Score=163.13 Aligned_cols=169 Identities=20% Similarity=0.260 Sum_probs=142.3
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
.++..+.+.|..|+|+| +++++|+.||.|.+|++.+..... +-+....-.+--+..+|.+++|+.+.. .+++|+.|
T Consensus 209 KFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrK--DLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqD 284 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRK--DLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQD 284 (508)
T ss_pred ecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhh--hhhhhhhcceeecccceEEEeecccHH-HhhccCcC
Confidence 45677889999999999 799999999999999997721100 001111223344778999999999998 99999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeee-cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
|.|++|.++++ .|++.|. +|+..|++++|+.++ ..+++++-|.++|+.-+.++++ +..+.+|.+-|+..
T Consensus 285 GkIKvWri~tG------~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~---LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 285 GKIKVWRIETG------QCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKC---LKEFRGHSSYVNEA 354 (508)
T ss_pred CcEEEEEEecc------hHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchh---HHHhcCccccccce
Confidence 99999999998 6788876 899999999999998 4677999999999999999995 89999999999999
Q ss_pred EeCCCCC--ccCCCCceEEeeeccee
Q 020480 280 ILNASFR--LSHEDTCTCTHRHSRYL 303 (325)
Q Consensus 280 ~~~p~~~--~~~~~d~~~~~~~~~~~ 303 (325)
.|.++|. ++++.|+++++|+....
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcch
Confidence 9999997 49999999999987553
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.86 E-value=1.6e-21 Score=165.97 Aligned_cols=223 Identities=14% Similarity=0.153 Sum_probs=177.4
Q ss_pred hHHHHhhhHhcC-hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480 17 INEEYKIWKKNT-PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND 95 (325)
Q Consensus 17 ~~~~~~iw~~~~-~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 95 (325)
-|-.++||+... +.+...+..|+.+ +.++.|++.+. +++.+++.. +|++|+..
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~k~--Vrd~~~s~~g~----------~fLS~sfD~-----~lKlwDtE--------- 288 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHRKP--VRDASFNNCGT----------SFLSASFDR-----FLKLWDTE--------- 288 (503)
T ss_pred CCceEEEEEEecCcceehhhhcchhh--hhhhhccccCC----------eeeeeecce-----eeeeeccc---------
Confidence 456789999877 8888888888865 88999999875 455555533 56666553
Q ss_pred cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480 96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR 175 (325)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 175 (325)
.++.. ..+.....++|+.|.|++++.|++|+.|+.|+.||++. .+.+..+.
T Consensus 289 -----------------TG~~~--~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs----------~kvvqeYd 339 (503)
T KOG0282|consen 289 -----------------TGQVL--SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS----------GKVVQEYD 339 (503)
T ss_pred -----------------cceEE--EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccc----------hHHHHHHH
Confidence 34433 45666778999999999989999999999999999998 44577788
Q ss_pred cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC----------------------------------------
Q 020480 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK---------------------------------------- 215 (325)
Q Consensus 176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~---------------------------------------- 215 (325)
.|-+.|..+.|-+.+. .+++.+.|++++||+.+.+-..+
T Consensus 340 ~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred hhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 8999999999999999 89999999999999987652110
Q ss_pred cccceEeeecCC--ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC---ccCC
Q 020480 216 SLEAMQIFKVHE--GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR---LSHE 290 (325)
Q Consensus 216 ~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~---~~~~ 290 (325)
.+.....|.+|. +.-..+.|+|+| .+|++|..||.+.+||.++.+. +..+++|..++..+.|+|... ++++
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl---~~~lkah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKL---VSKLKAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhh---hhccccCCcceEEEEecCCCcceeEecc
Confidence 001122344554 345668899998 6999999999999999999884 888899999999999999654 4899
Q ss_pred CCceEEeee
Q 020480 291 DTCTCTHRH 299 (325)
Q Consensus 291 ~d~~~~~~~ 299 (325)
.+|.+++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999985
No 63
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.6e-21 Score=168.67 Aligned_cols=220 Identities=21% Similarity=0.302 Sum_probs=165.0
Q ss_pred HHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCC
Q 020480 19 EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARH 98 (325)
Q Consensus 19 ~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 98 (325)
..+.+|.......-..+..+ .-.+.++.|.+++. .+++|+..+ .+.||+..-.
T Consensus 197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~----------~LavG~~~g-----~v~iwD~~~~---------- 249 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGS----------HLAVGTSDG-----TVQIWDVKEQ---------- 249 (484)
T ss_pred ceEEEEecCCCceEEeEecC--CCceEEEEECCCCC----------EEEEeecCC-----eEEEEehhhc----------
Confidence 34455655555444333333 33467888888774 577777644 6777766311
Q ss_pred CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC
Q 020480 99 YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS 178 (325)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~ 178 (325)
+........|...|.+++|+. ..+.+|+.+|.|..+|++.. ... ..++.+|.
T Consensus 250 ----------------k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~--------~~~-~~~~~~H~ 301 (484)
T KOG0305|consen 250 ----------------KKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRIS--------QHV-VSTLQGHR 301 (484)
T ss_pred ----------------cccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecc--------hhh-hhhhhccc
Confidence 111111223899999999994 58999999999999999872 121 22478999
Q ss_pred CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe--cCCcEEEEE
Q 020480 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG--DDQYLLIWD 256 (325)
Q Consensus 179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~--~dg~i~iwd 256 (325)
..|+.+.|++++. ++++|+.|+.+.|||.... .+...+..|...|.+++|+|-...+||+|+ .|++|++||
T Consensus 302 qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 302 QEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSP------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred ceeeeeEECCCCC-eeccCCCccceEeccCCCc------cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 9999999999999 8999999999999999554 567788999999999999998889999987 799999999
Q ss_pred ccCCCCC----------------------------------------CCeeEeeccCCCeeEEEeCCCCCc--cCCCCce
Q 020480 257 LRTPSVS----------------------------------------KPVQSVVAHQSEVGVSILNASFRL--SHEDTCT 294 (325)
Q Consensus 257 ~~~~~~~----------------------------------------~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~ 294 (325)
..++... +++..+.+|...|..++++|+|.. +++.|.+
T Consensus 375 ~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 375 TNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred cCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence 9875421 234455678888889999998874 8888889
Q ss_pred EEeeec
Q 020480 295 CTHRHS 300 (325)
Q Consensus 295 ~~~~~~ 300 (325)
+++|++
T Consensus 455 lrfw~~ 460 (484)
T KOG0305|consen 455 LRFWNL 460 (484)
T ss_pred EEeccc
Confidence 998875
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.86 E-value=7.1e-20 Score=155.37 Aligned_cols=216 Identities=23% Similarity=0.339 Sum_probs=164.6
Q ss_pred HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR 97 (325)
Q Consensus 18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 97 (325)
+..+++|+.+.......+..+.. ++.++.|.|+.. .++.+. .++.+.++++.
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~----------~~~~~~-----~~~~i~~~~~~----------- 123 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTS--YVSSVAFSPDGR----------ILSSSS-----RDKTIKVWDVE----------- 123 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCC--cEEEEEEcCCCC----------EEEEec-----CCCeEEEEECC-----------
Confidence 67788888877543333333332 477888888632 233333 23467777653
Q ss_pred CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480 98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH 177 (325)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h 177 (325)
..+. ......|...|.++.|+|++ .++++++.+|.|++||++. ......+..|
T Consensus 124 ---------------~~~~-~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~----------~~~~~~~~~~ 176 (289)
T cd00200 124 ---------------TGKC-LTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRT----------GKCVATLTGH 176 (289)
T ss_pred ---------------CcEE-EEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccc----------cccceeEecC
Confidence 1111 11223688899999999986 6888888799999999986 3446667788
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~ 257 (325)
...+.++.|+|++. .+++++.++.|++||++.+ ..+..+..|...+.+++|+|++ .++++++.||.|++||+
T Consensus 177 ~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 177 TGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTG------KCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDL 248 (289)
T ss_pred ccccceEEECCCcC-EEEEecCCCcEEEEECCCC------ceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEc
Confidence 88999999999997 7888888999999999875 3455666788899999999985 68888888999999999
Q ss_pred cCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480 258 RTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH 299 (325)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~ 299 (325)
++.. ++..+..|...|.+++|+|++.+ +++.|+.+++|+
T Consensus 249 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 249 RTGE---CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCce---eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9876 47777789999999999998764 888999999885
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=6e-21 Score=154.39 Aligned_cols=180 Identities=16% Similarity=0.211 Sum_probs=143.5
Q ss_pred CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC--------CCCCCCCcEEEecCCCceEEEE
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP--------LDGACSPDLRLRGHSTEGYGLS 185 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~--------~~~~~~~~~~~~~h~~~v~~l~ 185 (325)
+..+....-.|++++.+.+|+++| .++|+|+.|..|+|+|++....+.. .......++++..|..+|.++.
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred cccceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 355666667899999999999999 7999999999999999974322211 1122345678889999999999
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC
Q 020480 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP 265 (325)
Q Consensus 186 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 265 (325)
|+|... .|++|+.|++|++||+....-.+. ...+. ....|.+++|+|.| .+++.|..-.++++||+.+.++..+
T Consensus 180 FHPre~-ILiS~srD~tvKlFDfsK~saKrA---~K~~q-d~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 180 FHPRET-ILISGSRDNTVKLFDFSKTSAKRA---FKVFQ-DTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred ecchhh-eEEeccCCCeEEEEecccHHHHHH---HHHhh-ccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeee
Confidence 999988 999999999999999976532111 11222 34579999999998 5888999999999999999886322
Q ss_pred eeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 266 VQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 266 ~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
..--..|++.|+++.+++.|++ +++.||.+++||.
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence 2333679999999999999996 9999999999985
No 66
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.2e-21 Score=173.49 Aligned_cols=175 Identities=19% Similarity=0.228 Sum_probs=146.5
Q ss_pred CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i 205 (325)
..+..|.|..-..++||+++..|.|.+||+... .+.+.+..+..|+..+++++|++..+++|++|+.||.|++
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~ 160 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKS-------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKC 160 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCcc-------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEE
Confidence 356678888655689999999999999999862 1233445678999999999999999999999999999999
Q ss_pred EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF 285 (325)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~ 285 (325)
||++... ...++.+....|.+|.|+|..++.|+++.+.|.+++||+|.... +...+.+|.++|.|+.|+|++
T Consensus 161 ~DlR~~~------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r--~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 161 WDLRSKK------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR--CEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred Eeeeccc------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh--HHHHhhcccCceEEEeecCCC
Confidence 9999874 35567778889999999998789999999999999999998875 677889999999999999988
Q ss_pred Cc--cCCCCceEEeeecce--------eeeccCeeEEEee
Q 020480 286 RL--SHEDTCTCTHRHSRY--------LLYKFPFFVLVFP 315 (325)
Q Consensus 286 ~~--~~~~d~~~~~~~~~~--------~~~~~~~~~~~~~ 315 (325)
.+ +||.|+++++|+... +...+|+..+.+.
T Consensus 233 ~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR 272 (839)
T KOG0269|consen 233 EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR 272 (839)
T ss_pred ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence 75 899999999998752 2344555555543
No 67
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.8e-19 Score=137.12 Aligned_cols=185 Identities=19% Similarity=0.261 Sum_probs=141.2
Q ss_pred CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCC-------CC-----------------------
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSK-------PP----------------------- 163 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~-------~~----------------------- 163 (325)
|.+.+.+...|.+.|.|.+|+|.| .++|+|++|..|++..++..... ..
T Consensus 78 p~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 78 PSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CeEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 355666666789999999999999 79999999999998765431100 00
Q ss_pred ------------CCCCCCCcEEEecCCCceEEE-EecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec-----
Q 020480 164 ------------LDGACSPDLRLRGHSTEGYGL-SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV----- 225 (325)
Q Consensus 164 ------------~~~~~~~~~~~~~h~~~v~~l-~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----- 225 (325)
.-++..+...+.+|++.|.++ .|+ +. ++++|+.|.+|+.||++.. .++.++..
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~------~~v~~l~~~~~~~ 227 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVN------SCVNTLDNDFHDG 227 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeecc------ceeeeccCcccCC
Confidence 012334456677888888877 454 45 8999999999999999976 33443321
Q ss_pred --CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecc
Q 020480 226 --HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSR 301 (325)
Q Consensus 226 --~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~ 301 (325)
.++.|.+++..|.| ++|++|-.|.+.-+||+|.++ +++.+..|...|.|+.|+|... +++++|..+++-++.
T Consensus 228 glessavaav~vdpsg-rll~sg~~dssc~lydirg~r---~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 228 GLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGR---MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCc---eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 23679999999997 799999999999999999998 6999999999999999999765 499999999997664
Q ss_pred ee-eeccCeeEE
Q 020480 302 YL-LYKFPFFVL 312 (325)
Q Consensus 302 ~~-~~~~~~~~~ 312 (325)
-- ...+|++.+
T Consensus 304 gdla~el~~~vv 315 (350)
T KOG0641|consen 304 GDLAHELPIMVV 315 (350)
T ss_pred cchhhcCceEEE
Confidence 32 234554443
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.85 E-value=1e-18 Score=148.22 Aligned_cols=203 Identities=19% Similarity=0.250 Sum_probs=161.1
Q ss_pred HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480 34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN 113 (325)
Q Consensus 34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (325)
.+..|. -++.+++|.|+.. .+++++. ++.+.++++.-.
T Consensus 4 ~~~~h~--~~i~~~~~~~~~~----------~l~~~~~-----~g~i~i~~~~~~------------------------- 41 (289)
T cd00200 4 TLKGHT--GGVTCVAFSPDGK----------LLATGSG-----DGTIKVWDLETG------------------------- 41 (289)
T ss_pred HhcccC--CCEEEEEEcCCCC----------EEEEeec-----CcEEEEEEeeCC-------------------------
Confidence 344454 4588999999853 4555553 457888877411
Q ss_pred CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 193 (325)
. .......|...+..+.|+|++ +.+++++.+|.|++|++.. ......+..|...+.++.|++++. +
T Consensus 42 -~-~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~ 107 (289)
T cd00200 42 -E-LLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET----------GECVRTLTGHTSYVSSVAFSPDGR-I 107 (289)
T ss_pred -C-cEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCc----------ccceEEEeccCCcEEEEEEcCCCC-E
Confidence 1 122345688889999999988 6899999999999999986 244667788998999999999966 7
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
+++++.+|.|++||++.. .....+..|...+.+++|+|++ .++++++.|+.|++||++..+ ++..+..|.
T Consensus 108 ~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~---~~~~~~~~~ 177 (289)
T cd00200 108 LSSSSRDKTIKVWDVETG------KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGK---CVATLTGHT 177 (289)
T ss_pred EEEecCCCeEEEEECCCc------EEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccc---cceeEecCc
Confidence 888888999999999865 3466677888899999999985 688787789999999999777 377777888
Q ss_pred CCeeEEEeCCCCC--ccCCCCceEEeeecce
Q 020480 274 SEVGVSILNASFR--LSHEDTCTCTHRHSRY 302 (325)
Q Consensus 274 ~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~ 302 (325)
..+.+++|+|++. ++++.++.+++|+.+.
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 8999999999985 3677799999998763
No 69
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.85 E-value=2.1e-19 Score=144.82 Aligned_cols=249 Identities=15% Similarity=0.173 Sum_probs=181.3
Q ss_pred HHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCC-------CCCCeEEEEEEECCCCCCCcccCCCCcccCC
Q 020480 33 DLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE-------NEPNYLMLAQVQLPLDDSENDARHYDDDRSD 105 (325)
Q Consensus 33 ~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 105 (325)
..+..|+.. ++++.|.|++...+...+..+.+++...... ++.+.++=+++. ..... -.+ ...+-.
T Consensus 41 m~l~gh~ge--I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~--~d~s~-i~S--~gtDk~ 113 (338)
T KOG0265|consen 41 MLLPGHKGE--IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGM--RDGSH-ILS--CGTDKT 113 (338)
T ss_pred hhcCCCcce--EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeec--cCCCE-EEE--ecCCce
Confidence 345566655 8999999999887788888788887765321 222233323222 10000 011 122235
Q ss_pred CCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEE
Q 020480 106 FGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLS 185 (325)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 185 (325)
+.+|+...++.. .+...|.+.|+.+.-+..|+.++.+|+.||++++||.+. ...+.++ ....+++++.
T Consensus 114 v~~wD~~tG~~~-rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~----------k~~~~t~-~~kyqltAv~ 181 (338)
T KOG0265|consen 114 VRGWDAETGKRI-RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK----------KEAIKTF-ENKYQLTAVG 181 (338)
T ss_pred EEEEecccceee-ehhccccceeeecCccccCCeEEEecCCCceEEEEeecc----------cchhhcc-ccceeEEEEE
Confidence 667777777643 345679999999997777888999999999999999997 2334333 2356799999
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC
Q 020480 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP 265 (325)
Q Consensus 186 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 265 (325)
|...+. .+.+|+-|+.|++||++.. .....+.+|...|+.+..+|.| .++.+-+.|.++++||+|-....+.
T Consensus 182 f~d~s~-qv~sggIdn~ikvWd~r~~------d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 182 FKDTSD-QVISGGIDNDIKVWDLRKN------DGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred eccccc-ceeeccccCceeeeccccC------cceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCc
Confidence 999988 7999999999999999877 5688899999999999999998 5888999999999999996543323
Q ss_pred -eeEeeccC----CCeeEEEeCCCCCc--cCCCCceEEeeecce--eeeccC
Q 020480 266 -VQSVVAHQ----SEVGVSILNASFRL--SHEDTCTCTHRHSRY--LLYKFP 308 (325)
Q Consensus 266 -~~~~~~h~----~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~--~~~~~~ 308 (325)
+..+.+|. .-....+|+|++.. .++.|..+.+|+... +.|+.|
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP 305 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC
Confidence 56665543 23456789999885 788999999998654 455544
No 70
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.85 E-value=1.6e-19 Score=155.34 Aligned_cols=164 Identities=20% Similarity=0.291 Sum_probs=140.7
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
..+|...|+++.|-|..+..+++|++|+.|.+|.=.- .+...++..|...|.++.|+|+|. +++|++.|
T Consensus 143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----------FKFk~s~r~HskFV~~VRysPDG~-~Fat~gsD 211 (603)
T KOG0318|consen 143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----------FKFKSSFREHSKFVNCVRYSPDGS-RFATAGSD 211 (603)
T ss_pred eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----------eeeeecccccccceeeEEECCCCC-eEEEecCC
Confidence 3469999999999999999999999999999997543 344556778999999999999999 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeee---cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC---------------
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFK---VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV--------------- 262 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--------------- 262 (325)
|.+.+||-.++.+ +..+. +|.+.|.+++|+|++ ..|++++.|.+++|||+.+.+.
T Consensus 212 gki~iyDGktge~------vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv 284 (603)
T KOG0318|consen 212 GKIYIYDGKTGEK------VGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV 284 (603)
T ss_pred ccEEEEcCCCccE------EEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEE
Confidence 9999999998854 44444 899999999999997 6889999999999999987432
Q ss_pred -------------------------CCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 263 -------------------------SKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 263 -------------------------~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
..++..+.+|...|+++..+|++.. ++++||.+.-|+...
T Consensus 285 G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 285 GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred EEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 1345666789999999999999984 999999999998644
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.7e-20 Score=144.46 Aligned_cols=218 Identities=17% Similarity=0.143 Sum_probs=174.1
Q ss_pred hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA 96 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 96 (325)
.+.++|+|+.-...|...+..|..+ ++.++-+-+... + ++.+.+..+.+|+++
T Consensus 37 sdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~Dnsk----------f-----~s~GgDk~v~vwDV~---------- 89 (307)
T KOG0316|consen 37 SDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSSDNSK----------F-----ASCGGDKAVQVWDVN---------- 89 (307)
T ss_pred CCceEEeecccccceeeeecCCCce--eeeccccccccc----------c-----ccCCCCceEEEEEcc----------
Confidence 5678999999999888888888877 777776666542 2 455566788888874
Q ss_pred CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480 97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG 176 (325)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 176 (325)
.++. ..+..+|.+.|+.++|+.+. ..+++|+.|..+++||.+. ...+|++.+..
T Consensus 90 ----------------TGkv-~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS--------~s~ePiQilde 143 (307)
T KOG0316|consen 90 ----------------TGKV-DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRS--------RSFEPIQILDE 143 (307)
T ss_pred ----------------cCee-eeecccccceeeEEEecCcc-eEEEeccccceeEEEEccc--------CCCCccchhhh
Confidence 2332 23456799999999999987 7999999999999999998 67788999988
Q ss_pred CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256 (325)
Q Consensus 177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd 256 (325)
..+.|.++..+.. .+++|+.||+++.||++.+.. .. .-...+|++++|++++ +..+.++-|+++++.|
T Consensus 144 a~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l------~s--Dy~g~pit~vs~s~d~-nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 144 AKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKGTL------SS--DYFGHPITSVSFSKDG-NCSLASSLDSTLRLLD 211 (307)
T ss_pred hcCceeEEEeccc---EEEeeccCCcEEEEEeeccee------eh--hhcCCcceeEEecCCC-CEEEEeeccceeeecc
Confidence 8899999998743 799999999999999998843 22 2234579999999997 6888999999999999
Q ss_pred ccCCCCCCCeeEeeccCCCeeEEE--eCCCCC--ccCCCCceEEeeecce
Q 020480 257 LRTPSVSKPVQSVVAHQSEVGVSI--LNASFR--LSHEDTCTCTHRHSRY 302 (325)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~i~--~~p~~~--~~~~~d~~~~~~~~~~ 302 (325)
-.+++ .+..+++|...-..+. ++.... ++|+.||.+.+|++..
T Consensus 212 k~tGk---lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 212 KETGK---LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cchhH---HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 99998 4888999987654443 443333 4999999999998743
No 72
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.84 E-value=2.7e-19 Score=153.95 Aligned_cols=173 Identities=18% Similarity=0.193 Sum_probs=141.7
Q ss_pred CCceEEEEEe-ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceEEEEecC
Q 020480 113 NGKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSK 188 (325)
Q Consensus 113 ~~~~~~~~~~-~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p 188 (325)
-|++++.... .|..-|+|++|+|+| .+||+++.||+|.+||=.+ ...+..+. +|++.|.+++|+|
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGkt----------ge~vg~l~~~~aHkGsIfalsWsP 245 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKT----------GEKVGELEDSDAHKGSIFALSWSP 245 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCC----------ccEEEEecCCCCccccEEEEEECC
Confidence 4566665555 488999999999998 7999999999999999776 34456665 8999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCC-------------------------------------CcccceEeeecCCccEE
Q 020480 189 FKEGHLLSGSDDAQICLWDINAAPKN-------------------------------------KSLEAMQIFKVHEGVVE 231 (325)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~~-------------------------------------~~~~~~~~~~~~~~~v~ 231 (325)
++. .++|++.|.+++|||+.+.... ....++..+.+|...|+
T Consensus 246 Ds~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 246 DST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT 324 (603)
T ss_pred CCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence 999 8999999999999998776311 01124567789999999
Q ss_pred EEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeec
Q 020480 232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHS 300 (325)
Q Consensus 232 ~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~ 300 (325)
++..+|++ .+|.+|+.||.|.-||..++... -..-..|...|.+++-+..+.+ +.+.|.+++.-++
T Consensus 325 aLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~--~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 325 ALTVSPDG-KTIYSGSYDGHINSWDSGSGTSD--RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISL 391 (603)
T ss_pred EEEEcCCC-CEEEeeccCceEEEEecCCcccc--ccccccccceEEEEeecCCCcEEEEecCCeEEEEec
Confidence 99999998 68899999999999999988751 1111679999999999986665 8889999988654
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=2e-20 Score=160.54 Aligned_cols=154 Identities=17% Similarity=0.220 Sum_probs=118.8
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE--EecCCCceEEEEecCCCCCeEEEEe
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR--LRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
..+|...++|.+|+|.....|++++.||++++|++..... ..+.+.. ..+..-.++.++|+|++. ++|+|.
T Consensus 264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~------q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc 336 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS------QLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGC 336 (641)
T ss_pred cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh------heeEEeeccCCCcccCceeeecCCCcc-hhhhcc
Confidence 4468899999999999888999999999999999986211 1111111 113345789999999999 799999
Q ss_pred CCCcEEEEeCCCCCCCCcccceEeeecCCc--cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC--C
Q 020480 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ--S 274 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~ 274 (325)
.||+|.+|+.+..... .....-.+|.. .|++|.|+++| ++|++-+.|+++++||+|..+. ++.+..+.. -
T Consensus 337 ~DGSIQ~W~~~~~~v~---p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kk--pL~~~tgL~t~~ 410 (641)
T KOG0772|consen 337 LDGSIQIWDKGSRTVR---PVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKK--PLNVRTGLPTPF 410 (641)
T ss_pred cCCceeeeecCCcccc---cceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeecccccc--chhhhcCCCccC
Confidence 9999999998654322 12333467776 89999999998 7999999999999999999876 666654433 3
Q ss_pred CeeEEEeCCCCCc
Q 020480 275 EVGVSILNASFRL 287 (325)
Q Consensus 275 ~v~~i~~~p~~~~ 287 (325)
+-+.++|+|+.++
T Consensus 411 ~~tdc~FSPd~kl 423 (641)
T KOG0772|consen 411 PGTDCCFSPDDKL 423 (641)
T ss_pred CCCccccCCCceE
Confidence 4577899999885
No 74
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.5e-21 Score=171.04 Aligned_cols=162 Identities=20% Similarity=0.297 Sum_probs=148.3
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
..+|.++|.++.|++.. .+|++|+.+|+|++||+.. .+.++++.+|...+.+++|+|-+. ++++|+.|
T Consensus 66 ~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee----------Ak~vrtLtgh~~~~~sv~f~P~~~-~~a~gStd 133 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE----------AKIVRTLTGHLLNITSVDFHPYGE-FFASGSTD 133 (825)
T ss_pred eeccCCcceeeecCcch-hhhcccccCCceeeeehhh----------hhhhhhhhccccCcceeeeccceE-Eecccccc
Confidence 57899999999999987 7999999999999999987 455788999999999999999998 78999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
+.+++||++.. .|.+.+.+|...|..++|+|+| .++++|+.|.+++|||++.++. +..+..|.+.+.++.
T Consensus 134 td~~iwD~Rk~------Gc~~~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~---~~ef~~~e~~v~sle 203 (825)
T KOG0267|consen 134 TDLKIWDIRKK------GCSHTYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKL---SKEFKSHEGKVQSLE 203 (825)
T ss_pred ccceehhhhcc------CceeeecCCcceeEEEeecCCC-ceeeccCCcceeeeeccccccc---ccccccccccccccc
Confidence 99999999954 4788899999999999999998 7999999999999999999984 888999999999999
Q ss_pred eCCCCCc--cCCCCceEEeeecceee
Q 020480 281 LNASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 281 ~~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
|+|..-+ +||.|.++++|++..+.
T Consensus 204 ~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 204 FHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cCchhhhhccCCCCceeeeeccceeE
Confidence 9998775 89999999999998553
No 75
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=3e-19 Score=159.62 Aligned_cols=197 Identities=16% Similarity=0.229 Sum_probs=157.6
Q ss_pred ceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEec
Q 020480 44 SLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQIN 123 (325)
Q Consensus 44 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (325)
..+++++|++ +.++.|. +++.++||+.. ..+-++..-.
T Consensus 353 i~~l~YSpDg----------q~iaTG~-----eDgKVKvWn~~---------------------------SgfC~vTFte 390 (893)
T KOG0291|consen 353 ITSLAYSPDG----------QLIATGA-----EDGKVKVWNTQ---------------------------SGFCFVTFTE 390 (893)
T ss_pred eeeEEECCCC----------cEEEecc-----CCCcEEEEecc---------------------------CceEEEEecc
Confidence 6688888887 4565443 45588888764 2356677778
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceEEEEecCCCCCeEEEEeCCC-
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYGLSWSKFKEGHLLSGSDDA- 201 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~dg- 201 (325)
|++.|+.+.|+..+ +.+++.+-||+|+.||+.. ....+++.. ..-...+++..|.|. ++..|+.|.
T Consensus 391 Hts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkR----------YrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F 458 (893)
T KOG0291|consen 391 HTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKR----------YRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF 458 (893)
T ss_pred CCCceEEEEEEecC-CEEEEeecCCeEEeeeecc----------cceeeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence 99999999999988 7999999999999999976 333455542 234567889999898 788888775
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL 281 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~ 281 (325)
.|.+|+++++ +.+..+.+|.++|.+++|+|.+ ..||+++.|.+||+||+-.... .+.++. +...+..++|
T Consensus 459 ~IfvWS~qTG------qllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~--~vEtl~-i~sdvl~vsf 528 (893)
T KOG0291|consen 459 EIFVWSVQTG------QLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG--TVETLE-IRSDVLAVSF 528 (893)
T ss_pred EEEEEEeecC------eeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc--eeeeEe-eccceeEEEE
Confidence 4999999999 5688889999999999999997 6999999999999999987653 245543 6788999999
Q ss_pred CCCCCc--cCCCCceEEeeecceee
Q 020480 282 NASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 282 ~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
.|+|+- .+..||.+.+|+.....
T Consensus 529 rPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 529 RPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred cCCCCeEEEEEecceEEEEEhhhce
Confidence 999983 67789999999875443
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.2e-19 Score=159.69 Aligned_cols=172 Identities=20% Similarity=0.310 Sum_probs=145.4
Q ss_pred CCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceEE
Q 020480 105 DFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYG 183 (325)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~ 183 (325)
.++.|+...+++..+..+. ...|+++.|+++| ..||+|..+|.|.|||... .+.+..+.+ |...|-+
T Consensus 198 ~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~----------~k~~~~~~~~h~~rvg~ 265 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG-EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKE----------QKKTRTLRGSHASRVGS 265 (484)
T ss_pred eEEEEecCCCceEEeEecC-CCceEEEEECCCC-CEEEEeecCCeEEEEehhh----------ccccccccCCcCceeEE
Confidence 4456777777766655555 8999999999999 7999999999999999987 455667777 9999999
Q ss_pred EEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC
Q 020480 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS 263 (325)
Q Consensus 184 l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 263 (325)
++|+ .. .+.+|+.|+.|..+|++.... ....+.+|...|+.+.|++++ .++|+|+.|+.+.|||.....
T Consensus 266 laW~--~~-~lssGsr~~~I~~~dvR~~~~-----~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~-- 334 (484)
T KOG0305|consen 266 LAWN--SS-VLSSGSRDGKILNHDVRISQH-----VVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPE-- 334 (484)
T ss_pred Eecc--Cc-eEEEecCCCcEEEEEEecchh-----hhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCcc--
Confidence 9998 33 799999999999999998754 222478899999999999997 799999999999999996666
Q ss_pred CCeeEeeccCCCeeEEEeCCCCC--c---cCCCCceEEeeec
Q 020480 264 KPVQSVVAHQSEVGVSILNASFR--L---SHEDTCTCTHRHS 300 (325)
Q Consensus 264 ~~~~~~~~h~~~v~~i~~~p~~~--~---~~~~d~~~~~~~~ 300 (325)
+...+..|.+.|.+++|+|... + -|+.|.++++|+.
T Consensus 335 -p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 335 -PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred -ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 6888999999999999999644 3 5677899999875
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=1.4e-19 Score=143.26 Aligned_cols=181 Identities=19% Similarity=0.286 Sum_probs=147.5
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
...+|.+.|.+++|+.+| ..+|+|+.|+++.+|++.. .+........+|++.|-.++|+|..+.+|++++.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~--------~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~ 85 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLER--------DRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG 85 (313)
T ss_pred HhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecc--------hhhhhhhcccCCCcchhhheeCCCCCcceEEecC
Confidence 345689999999999999 7999999999999999986 3333344567899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-----------------
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV----------------- 262 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~----------------- 262 (325)
|.+|++||++.+ ++..........+ .+.|+|+| .++++++.|..|.+.|.|+.+.
T Consensus 86 dk~ir~wd~r~~------k~~~~i~~~~eni-~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 86 DKTIRIWDIRSG------KCTARIETKGENI-NITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN 157 (313)
T ss_pred CceEEEEEeccC------cEEEEeeccCcce-EEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecC
Confidence 999999999988 4555554433334 57899987 5888999999999999887321
Q ss_pred ---------------------CCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee-------eccCeeEE
Q 020480 263 ---------------------SKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL-------YKFPFFVL 312 (325)
Q Consensus 263 ---------------------~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~-------~~~~~~~~ 312 (325)
.+|+.++++|.....||.|+|+|+. +|+.|..+.+||+.-++ ..||+-.+
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl 237 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL 237 (313)
T ss_pred CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE
Confidence 2678888999999999999999996 89999999999985543 45777777
Q ss_pred EeecC
Q 020480 313 VFPLF 317 (325)
Q Consensus 313 ~~~~~ 317 (325)
.|.--
T Consensus 238 SFS~d 242 (313)
T KOG1407|consen 238 SFSHD 242 (313)
T ss_pred EeccC
Confidence 76543
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.2e-20 Score=157.52 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=138.0
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
......|.++.|..+| .++|+|...|.|+|||..+ ...++.+.+|+.++..+.|+|.+...+++|+.|+
T Consensus 65 srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~----------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~ 133 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKS----------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK 133 (487)
T ss_pred HhhccceeEEEeecCC-eEEEccCCcCcEEEecccc----------HHHHHHHhhccCceeEEEecccCCeEEEecCCCc
Confidence 3467889999999999 7999999999999999654 3456778899999999999999998999999999
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL 281 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~ 281 (325)
.+++||+.+. .....+.+|+..|.+.+|+|.+.++++|||.||.|++||+|.... .+.++. |..+|-++.+
T Consensus 134 v~k~~d~s~a------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~eln-hg~pVe~vl~ 204 (487)
T KOG0310|consen 134 VVKYWDLSTA------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVELN-HGCPVESVLA 204 (487)
T ss_pred eEEEEEcCCc------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEEec-CCCceeeEEE
Confidence 9999999986 235578899999999999998888999999999999999998853 466654 8999999999
Q ss_pred CCCCCc-cCCCCceEEeeecc
Q 020480 282 NASFRL-SHEDTCTCTHRHSR 301 (325)
Q Consensus 282 ~p~~~~-~~~~d~~~~~~~~~ 301 (325)
-|.|.+ ..+.-..+++||+.
T Consensus 205 lpsgs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 205 LPSGSLIASAGGNSVKVWDLT 225 (487)
T ss_pred cCCCCEEEEcCCCeEEEEEec
Confidence 999764 33345689999975
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=150.92 Aligned_cols=215 Identities=15% Similarity=0.205 Sum_probs=160.9
Q ss_pred HHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCC
Q 020480 19 EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARH 98 (325)
Q Consensus 19 ~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 98 (325)
.+.-++++.+.++...+..|+.. +.++.+.|+... .+.+ ..+..|+||...+.
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh~kk--i~~v~~~~~~~~----------v~~a-----Sad~~i~vws~~~~---------- 293 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGHTKK--ITSVKFHKDLDT----------VITA-----SADEIIRVWSVPLS---------- 293 (506)
T ss_pred CceEEEecchhhhhhhccCcceE--EEEEEeccchhh----------eeec-----CCcceEEeeccccc----------
Confidence 35556777777788888888766 778888886542 2111 22236777765322
Q ss_pred CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--
Q 020480 99 YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-- 176 (325)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-- 176 (325)
. .......|.++|+.+..+|.| .+|++++.||...+.|++. ++. +.....
T Consensus 294 ----------------s-~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~--------g~~--lt~vs~~~ 345 (506)
T KOG0289|consen 294 ----------------S-EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISS--------GSQ--LTVVSDET 345 (506)
T ss_pred ----------------c-CccccccccccceeeeeccCC-cEEEEecCCceEEEEEccC--------CcE--EEEEeecc
Confidence 1 112356899999999999999 7999999999999999987 332 222222
Q ss_pred CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256 (325)
Q Consensus 177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd 256 (325)
..-.+++.+|+|+|. +|.+|..||.++|||+.... .+..|.+|+++|..++|+.+| +++|+++.|+.|++||
T Consensus 346 s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~------~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 346 SDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT------NVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWD 417 (506)
T ss_pred ccceeEEeeEcCCce-EEeccCCCceEEEEEcCCcc------ccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEE
Confidence 223589999999999 99999999999999999874 467789999999999999987 7999999999999999
Q ss_pred ccCCCCCCCeeEeec-cCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480 257 LRTPSVSKPVQSVVA-HQSEVGVSILNASFRL--SHEDTCTCTHRH 299 (325)
Q Consensus 257 ~~~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~--~~~~d~~~~~~~ 299 (325)
+|..+. +.++.- ...++.++.|++.|.+ .+|.+-.+.+.+
T Consensus 418 LRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 418 LRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ehhhcc---cceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 998875 444422 2347999999999997 445555554443
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.2e-20 Score=150.66 Aligned_cols=185 Identities=20% Similarity=0.320 Sum_probs=152.6
Q ss_pred CCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeC------CCCCC--------CC------------
Q 020480 109 FGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDY------SKHPS--------KP------------ 162 (325)
Q Consensus 109 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~------~~~~~--------~~------------ 162 (325)
|+...+.+. .+..+|.+.|++++|++++ .++++++.|++-+||.. ..+.. +.
T Consensus 175 Ws~Esg~CL-~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~ 252 (481)
T KOG0300|consen 175 WSLESGACL-ATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDS 252 (481)
T ss_pred Eeeccccce-eeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccc
Confidence 444555544 3467899999999999998 79999999999999973 22100 00
Q ss_pred --CCC--CCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480 163 --PLD--GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR 238 (325)
Q Consensus 163 --~~~--~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 238 (325)
+.+ ....|+..+.+|.+.|.+..|-..+. .+++++.|.+..+||++++ .++..+.+|....+.++-+|.
T Consensus 253 ~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd~ELtHcstHpt 325 (481)
T KOG0300|consen 253 SEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETG------EVVNILTGHDSELTHCSTHPT 325 (481)
T ss_pred ccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccC------ceeccccCcchhccccccCCc
Confidence 001 12346678899999999999999888 8999999999999999998 568889999999999999998
Q ss_pred CCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecceeee
Q 020480 239 HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRYLLY 305 (325)
Q Consensus 239 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~~~~ 305 (325)
. .++++.+.|-+.++||+|..- ..+..+++|...|+++.|+-+.++ ++++|.++++|+++.+..
T Consensus 326 Q-rLVvTsSrDtTFRLWDFReaI--~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 326 Q-RLVVTSSRDTTFRLWDFREAI--QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred c-eEEEEeccCceeEeccchhhc--ceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC
Confidence 4 799999999999999999443 368889999999999999998876 999999999999987654
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.84 E-value=9.3e-20 Score=144.64 Aligned_cols=170 Identities=17% Similarity=0.156 Sum_probs=144.3
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
...+|..+++.+.|+.+| .+|.+|+.|..+.||-... ...+.++.||++.|++++.+-+.. .++||+.
T Consensus 5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~n----------GerlGty~GHtGavW~~Did~~s~-~liTGSA 72 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLN----------GERLGTYDGHTGAVWCCDIDWDSK-HLITGSA 72 (327)
T ss_pred ccccCccccceEEecCCC-cEEEEecCCCCceEEEecC----------CceeeeecCCCceEEEEEecCCcc-eeeeccc
Confidence 456899999999999999 7999999999999998755 355889999999999999998888 8999999
Q ss_pred CCcEEEEeCCCCCCCC-----------------------------------------------cccceEeeecCCccEEE
Q 020480 200 DAQICLWDINAAPKNK-----------------------------------------------SLEAMQIFKVHEGVVED 232 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~v~~ 232 (325)
|.++++||+.+++... .-.|...+..+.+.++.
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 9999999999885210 00134444556778999
Q ss_pred EEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee
Q 020480 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 233 v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
+-|.|.+ .+|++|..||.|..||++++.. .+.+...|...|+.++++|+..+ +++.|.+.++||.+.+.
T Consensus 153 a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~--~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 153 ALWGPLG-ETIIAGHEDGSISIYDARTGKE--LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred eeecccC-CEEEEecCCCcEEEEEcccCce--eeechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence 9999997 5888999999999999999875 46666789999999999999985 99999999999987654
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-20 Score=148.06 Aligned_cols=234 Identities=14% Similarity=0.155 Sum_probs=171.3
Q ss_pred hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
...-|+++|+|+..++. .+...+.+.|+.+++|.+.++ .+++.+....+-...+.+.++..+..+.
T Consensus 69 TGSAD~t~kLWDv~tGk---~la~~k~~~~Vk~~~F~~~gn----------~~l~~tD~~mg~~~~v~~fdi~~~~~~~- 134 (327)
T KOG0643|consen 69 TGSADQTAKLWDVETGK---QLATWKTNSPVKRVDFSFGGN----------LILASTDKQMGYTCFVSVFDIRDDSSDI- 134 (327)
T ss_pred eccccceeEEEEcCCCc---EEEEeecCCeeEEEeeccCCc----------EEEEEehhhcCcceEEEEEEccCChhhh-
Confidence 44467899999998863 456667778899999999885 4566666666666778888775331100
Q ss_pred cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480 94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR 173 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 173 (325)
.. .+| ..+...+.+.++.+-|.|.+ ..|++|..||.|..||+++ + ...+..
T Consensus 135 ------~s----------~ep---~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~--------g-~~~v~s 185 (327)
T KOG0643|consen 135 ------DS----------EEP---YLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDART--------G-KELVDS 185 (327)
T ss_pred ------cc----------cCc---eEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEccc--------C-ceeeec
Confidence 00 122 22344577999999999998 6999999999999999987 2 123444
Q ss_pred EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc-E
Q 020480 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-L 252 (325)
Q Consensus 174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~-i 252 (325)
-..|+..|++++++|+.. +++|++.|.+-++||+++. ..+.++. ...+|++.+++|....+++-|+.+.. |
T Consensus 186 ~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl------~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dV 257 (327)
T KOG0643|consen 186 DEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTL------EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDV 257 (327)
T ss_pred hhhhccccccccccCCcc-eEEecccCccceeeeccce------eeEEEee-ecccccceecccccceEEecCCceeeee
Confidence 567899999999999998 8999999999999999976 4566665 35689999999986555555554321 2
Q ss_pred EEEEccCCCCC---------CCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEee
Q 020480 253 LIWDLRTPSVS---------KPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHR 298 (325)
Q Consensus 253 ~iwd~~~~~~~---------~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~ 298 (325)
.-=+.|.++.. +.+..+++|-+||++|+|+|+|+. +|+.|+.+++.
T Consensus 258 TTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 258 TTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred eeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 22222222110 135667899999999999999995 99999999985
No 83
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2e-19 Score=141.10 Aligned_cols=173 Identities=18% Similarity=0.224 Sum_probs=142.1
Q ss_pred eEEEEEeccCCCeeEEEecC--CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCC-
Q 020480 116 VQIIQQINHDGEVNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG- 192 (325)
Q Consensus 116 ~~~~~~~~h~~~v~~v~~~~--~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~- 192 (325)
..+....+|.++|..++|.. .| .+||+++.||.|.||.... ++.........|...|.+++|.|.+-+
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~--------g~w~k~~e~~~h~~SVNsV~wapheygl 117 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEEN--------GRWTKAYEHAAHSASVNSVAWAPHEYGL 117 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCC--------Cchhhhhhhhhhcccceeecccccccce
Confidence 44455678999999999986 56 7999999999999999887 666667778899999999999998643
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC---C----------CcEEEEEecCCcEEEEEccC
Q 020480 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---H----------EYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~----------~~~l~s~~~dg~i~iwd~~~ 259 (325)
.|++++.||.|.|.+.+.... . .......+|.-.|++++|.|. | ...|++|+.|..|+||+...
T Consensus 118 ~LacasSDG~vsvl~~~~~g~-w--~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 118 LLACASSDGKVSVLTYDSSGG-W--TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred EEEEeeCCCcEEEEEEcCCCC-c--cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence 578899999999999987622 1 223456789999999999985 2 14599999999999999998
Q ss_pred CCCCCCeeEeeccCCCeeEEEeCCCCC------ccCCCCceEEeeecc
Q 020480 260 PSVSKPVQSVVAHQSEVGVSILNASFR------LSHEDTCTCTHRHSR 301 (325)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~i~~~p~~~------~~~~~d~~~~~~~~~ 301 (325)
.+ ...-.++.+|.+.|+.++|.|.-- .+++.|+++.+|..+
T Consensus 195 ~~-w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 195 DS-WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred cc-hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 74 334556899999999999999643 289999999999765
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.8e-19 Score=146.31 Aligned_cols=247 Identities=15% Similarity=0.232 Sum_probs=182.2
Q ss_pred hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEE----EECCCCC
Q 020480 16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQ----VQLPLDD 91 (325)
Q Consensus 16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~----~~~~~~~ 91 (325)
.-|.+-+||-.....+.-.+..|... +-++.|.+.+. -++.++.... -.||+ +..|...
T Consensus 167 SADhTA~iWs~Esg~CL~~Y~GH~GS--VNsikfh~s~~----------L~lTaSGD~t-----aHIW~~av~~~vP~~~ 229 (481)
T KOG0300|consen 167 SADHTARIWSLESGACLATYTGHTGS--VNSIKFHNSGL----------LLLTASGDET-----AHIWKAAVNWEVPSNN 229 (481)
T ss_pred ccccceeEEeeccccceeeecccccc--eeeEEeccccc----------eEEEccCCcc-----hHHHHHhhcCcCCCCC
Confidence 45678899999999888888888776 66888888653 3344443222 22333 3345432
Q ss_pred CCcccC------CCCcccCCCC---CCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC
Q 020480 92 SENDAR------HYDDDRSDFG---GFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP 162 (325)
Q Consensus 92 ~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~ 162 (325)
...+-+ ..++.+.+.. .-+...-+..+....+|.+.|.+..|-..| ..+++++.|.+..+||+.+
T Consensus 230 a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEt----- 303 (481)
T KOG0300|consen 230 APSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVET----- 303 (481)
T ss_pred CCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeeccccceeeeecc-----
Confidence 221111 1111111111 111112244556667899999999999877 7999999999999999998
Q ss_pred CCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcE
Q 020480 163 PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242 (325)
Q Consensus 163 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 242 (325)
..++..+.||....+.++-+|... ++++++.|.+.++||++.. +..+..|++|...|+++.|..+. .
T Consensus 304 -----ge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~dd--~ 370 (481)
T KOG0300|consen 304 -----GEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTDD--R 370 (481)
T ss_pred -----CceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhh-----cceeeeecccccceeEEEEecCC--c
Confidence 566888999999999999999988 9999999999999999954 35678899999999999999864 5
Q ss_pred EEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480 243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR 301 (325)
Q Consensus 243 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~ 301 (325)
+++|++|.+|++||+|+++. |+.++. ..++++.++.+..+.+ .--+...++++|+.
T Consensus 371 vVSgSDDrTvKvWdLrNMRs--plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRS--PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred eeecCCCceEEEeeeccccC--cceeee-cCCccceeEeecCCceEEeccCCceEEEEecC
Confidence 78999999999999999886 788775 4678999999987764 33456678887764
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.82 E-value=2.6e-19 Score=162.82 Aligned_cols=218 Identities=20% Similarity=0.262 Sum_probs=175.5
Q ss_pred hhhhHHHHhhhHhcChhHHHH-hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYDL-VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS 92 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~-~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 92 (325)
....+.++++|+.+..++-.. +..|... ++++++.-.. ..++.|+... .+.+|++.
T Consensus 223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~--V~~l~~~~~~----------~~lvsgS~D~-----t~rvWd~~------ 279 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLILTRLVGHFGG--VWGLAFPSGG----------DKLVSGSTDK-----TERVWDCS------ 279 (537)
T ss_pred ecCCCceeEEeecccceEEEeeccCCCCC--ceeEEEecCC----------CEEEEEecCC-----cEEeEecC------
Confidence 344567778888888776666 8888766 7777776522 2455555433 57777652
Q ss_pred CcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480 93 ENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL 172 (325)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 172 (325)
++..... ..+|++.|.++...+ ..+++|+.|.+|++|++.. ...+.
T Consensus 280 --------------------sg~C~~~-l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n----------~~~l~ 325 (537)
T KOG0274|consen 280 --------------------TGECTHS-LQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTN----------GACLN 325 (537)
T ss_pred --------------------CCcEEEE-ecCCCceEEEEEccC---ceEeeccCCceEEEEeccC----------cceEE
Confidence 3444433 457999999999877 5788999999999999997 34477
Q ss_pred EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcE
Q 020480 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252 (325)
Q Consensus 173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i 252 (325)
.+.+|.++|.++..+ +. ++++|+.|++|++||+.++ +++..+.+|...|+++.+.+. ..+++|+.|++|
T Consensus 326 l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 326 LLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTI 394 (537)
T ss_pred EeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhc------eeeeeecCCcceEEEEEecCc--ceEEeeeeccce
Confidence 777899999999998 45 8999999999999999976 789999999999999988753 578899999999
Q ss_pred EEEEccCC-CCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480 253 LIWDLRTP-SVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY 302 (325)
Q Consensus 253 ~iwd~~~~-~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~ 302 (325)
++||+++. ++ +.++.+|.+-+.++.+..+-.++++.|+++++||...
T Consensus 395 kvWdl~~~~~c---~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 395 KVWDLRTKRKC---IHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred EeecCCchhhh---hhhhcCCcccccccccccceeEeccccccEEEeeccc
Confidence 99999999 64 8999999999988888887777999999999997644
No 86
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.82 E-value=7.9e-19 Score=144.90 Aligned_cols=164 Identities=16% Similarity=0.198 Sum_probs=141.5
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
......|+..|.+++.+|+. +++|+|+.|-.-.+|+..+ + .....+.+|...|+++.|+.++. +|+||
T Consensus 57 ~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~--------g--e~~~eltgHKDSVt~~~Fshdgt-lLATG 124 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST--------G--EFAGELTGHKDSVTCCSFSHDGT-LLATG 124 (399)
T ss_pred eeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC--------C--cceeEecCCCCceEEEEEccCce-EEEec
Confidence 44566899999999999955 8999999999999999988 3 34678899999999999999999 99999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
+.+|.|+||+..++.. ...+...-..+.=+.|||.+ .+|++|+.||.+-+|.+.+.. ..+.+.+|..+++
T Consensus 125 dmsG~v~v~~~stg~~------~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~---~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGE------QWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQA---LCKVMSGHNSPCT 194 (399)
T ss_pred CCCccEEEEEcccCce------EEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcc---eeeEecCCCCCcc
Confidence 9999999999998743 33444344567779999976 799999999999999999875 3788899999999
Q ss_pred EEEeCCCCCc--cCCCCceEEeeeccee
Q 020480 278 VSILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 278 ~i~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
+=.|.|+|+. ++..|+++++|+...-
T Consensus 195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred cccccCCCceEEEEecCceEEEEecCCC
Confidence 9999999984 7888999999987553
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.82 E-value=3.4e-19 Score=150.05 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=140.0
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
.-+|...|+.+.|+|+. ..+++++.|-.|+||.... .........|..+|+.+..+|.|. +|++++.|
T Consensus 257 ~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~----------~s~~~~~~~h~~~V~~ls~h~tge-YllsAs~d 324 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPL----------SSEPTSSRPHEEPVTGLSLHPTGE-YLLSASND 324 (506)
T ss_pred ccCcceEEEEEEeccch-hheeecCCcceEEeecccc----------ccCccccccccccceeeeeccCCc-EEEEecCC
Confidence 45799999999999987 6899999999999999886 222345678999999999999999 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeec--CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV 278 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 278 (325)
|+....|++.+.. +..... ..-.+++.+|||+| .+|++|..||.|+|||+..+.. +..+.+|.++|..
T Consensus 325 ~~w~Fsd~~~g~~------lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~---~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 325 GTWAFSDISSGSQ------LTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTN---VAKFPGHTGPVKA 394 (506)
T ss_pred ceEEEEEccCCcE------EEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccc---cccCCCCCCceeE
Confidence 9999999998843 333222 23468999999998 7999999999999999999884 8889999999999
Q ss_pred EEeCCCCCc--cCCCCceEEeeecceee
Q 020480 279 SILNASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 279 i~~~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
|+|+.+|-+ ++++|+.+++||+|...
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhc
Confidence 999999986 78899999999998765
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=2e-19 Score=160.70 Aligned_cols=242 Identities=18% Similarity=0.173 Sum_probs=184.9
Q ss_pred hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA 96 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 96 (325)
-++.++||++.+-.+...+-+. -.+...|.|... .+++|+.++ .+.++++.-.
T Consensus 392 a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~----------~Iv~G~k~G-----el~vfdlaS~-------- 444 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDR----------YIVLGTKNG-----ELQVFDLASA-------- 444 (888)
T ss_pred CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCc----------eEEEeccCC-----ceEEEEeehh--------
Confidence 4588999999887666665555 367888888763 677888755 6777777411
Q ss_pred CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-
Q 020480 97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR- 175 (325)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~- 175 (325)
.-++. ..+|.+.|..++.+|++ ..+++|+.|.+|++||........ +..+.+..+.
T Consensus 445 -----------------~l~Et--i~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~---gt~~k~lsl~~ 501 (888)
T KOG0306|consen 445 -----------------SLVET--IRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVP---GTQKKVLSLKH 501 (888)
T ss_pred -----------------hhhhh--hhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccC---cccceeeeecc
Confidence 11222 23799999999999999 799999999999999986432211 1111111111
Q ss_pred ----cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc
Q 020480 176 ----GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY 251 (325)
Q Consensus 176 ----~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~ 251 (325)
.-...|.++.++|++. +|+.+=.|.+|+||-+.+. +..-++.+|.-+|.++..+|++ .+++|||.|..
T Consensus 502 ~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl------KFflsLYGHkLPV~smDIS~DS-klivTgSADKn 573 (888)
T KOG0306|consen 502 TRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL------KFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKN 573 (888)
T ss_pred ceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecce------eeeeeecccccceeEEeccCCc-CeEEeccCCCc
Confidence 2346799999999999 8999999999999999876 4567789999999999999997 79999999999
Q ss_pred EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee--e---ccCeeEEEeecCCC
Q 020480 252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL--Y---KFPFFVLVFPLFPS 319 (325)
Q Consensus 252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~--~---~~~~~~~~~~~~~~ 319 (325)
|++|-+.-+.| -.++.+|...|.++.|-|...+ ++|.|+.++-||...+. . .-....-|...+|.
T Consensus 574 VKiWGLdFGDC---HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 574 VKIWGLDFGDC---HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN 645 (888)
T ss_pred eEEeccccchh---hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCC
Confidence 99999999987 6778899999999999997664 99999999999765543 2 22234445555554
No 89
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.3e-18 Score=146.33 Aligned_cols=242 Identities=15% Similarity=0.106 Sum_probs=177.9
Q ss_pred HHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCC
Q 020480 19 EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARH 98 (325)
Q Consensus 19 ~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 98 (325)
..+.+|..+.+.... ...-.+=|+..++-.|.+ ..++.|+... .|++|.+.
T Consensus 61 p~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G----------~~l~ag~i~g-----~lYlWels------------ 111 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVV--QYIVLPGPVHALASSNLG----------YFLLAGTISG-----NLYLWELS------------ 111 (476)
T ss_pred ccccccccCchhhhh--hhcccccceeeeecCCCc----------eEEEeecccC-----cEEEEEec------------
Confidence 356777777765554 122223346566666655 3455554433 78999874
Q ss_pred CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC
Q 020480 99 YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS 178 (325)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~ 178 (325)
.+.+.- ...+|-..|+|+.|+.+| ..|++|+.||.|.+|.+...-.... +....|.+.+..|+
T Consensus 112 --------------sG~LL~-v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~-~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 112 --------------SGILLN-VLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADN-DHSVKPLHIFSDHT 174 (476)
T ss_pred --------------cccHHH-HHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeeccccc-CCCccceeeeccCc
Confidence 333332 236899999999999999 7999999999999999865433321 23568889999999
Q ss_pred CceEEEEecCCC-CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480 179 TEGYGLSWSKFK-EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (325)
Q Consensus 179 ~~v~~l~~~p~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~ 257 (325)
-+|+++...+.+ +..++|+|.|.++++||+..+ ..+.++. ....+.+++.+|.+ +.+..|+.+|.|.+.++
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g------~LLlti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG------VLLLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLL 246 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccc------eeeEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeeh
Confidence 999999987763 348999999999999999987 3344433 45679999999975 78889999999999988
Q ss_pred cCCC-------------CCCCeeEeeccCC--CeeEEEeCCCCCc--cCCCCceEEeeecc------eee-eccCeeEEE
Q 020480 258 RTPS-------------VSKPVQSVVAHQS--EVGVSILNASFRL--SHEDTCTCTHRHSR------YLL-YKFPFFVLV 313 (325)
Q Consensus 258 ~~~~-------------~~~~~~~~~~h~~--~v~~i~~~p~~~~--~~~~d~~~~~~~~~------~~~-~~~~~~~~~ 313 (325)
.... ....+..+.+|.. +|+|++.+-+|.+ +|+.|+.+++|++. ... .+-|+..+.
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeE
Confidence 6543 1123456678887 9999999999995 99999999999863 333 566777666
Q ss_pred e
Q 020480 314 F 314 (325)
Q Consensus 314 ~ 314 (325)
+
T Consensus 327 i 327 (476)
T KOG0646|consen 327 I 327 (476)
T ss_pred e
Confidence 6
No 90
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=8.5e-19 Score=148.57 Aligned_cols=190 Identities=17% Similarity=0.168 Sum_probs=146.3
Q ss_pred EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
+....|.++|+++.|+|.+...+.+.+.||+|++-|+.. .....+..+..-...+.+++|+.... .++.+.
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~--------~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~ 298 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG--------NISEEVLSLDTDNIWFSSLDFSAESR-SVLFGD 298 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecc--------hhhHHHhhcCccceeeeeccccCCCc-cEEEee
Confidence 345689999999999999888999999999999999987 33333444444455678889988888 577777
Q ss_pred CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCC-CeeEeeccCCCee
Q 020480 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-PVQSVVAHQSEVG 277 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~ 277 (325)
.=|...+||+++... ....+.-|...|..++++|..+.+|||||.|++.+|||+|...... |+...-.|+..|+
T Consensus 299 ~~G~f~~iD~R~~~s-----~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~ 373 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDGS-----EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVN 373 (498)
T ss_pred cccceEEEEeecCCc-----cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceee
Confidence 777999999998754 2344566888999999999999999999999999999999766443 4455567999999
Q ss_pred EEEeCCCCC-c-cCCCCceEEeeecceeeeccCeeEEEeecCCCccc
Q 020480 278 VSILNASFR-L-SHEDTCTCTHRHSRYLLYKFPFFVLVFPLFPSLQH 322 (325)
Q Consensus 278 ~i~~~p~~~-~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (325)
+..|+|.+- + +.+.|..+++|+...+..+.+-...+..-..+.||
T Consensus 374 sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw 420 (498)
T KOG4328|consen 374 SAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW 420 (498)
T ss_pred eeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccccc
Confidence 999999754 3 78899999999987555444433333333333333
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=3.3e-18 Score=135.48 Aligned_cols=200 Identities=17% Similarity=0.215 Sum_probs=158.5
Q ss_pred CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE
Q 020480 42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ 121 (325)
Q Consensus 42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (325)
.++.+|+|.-++. +++.|+... ...++.+..- ........
T Consensus 21 ~~v~Sv~wn~~g~----------~lasgs~dk-----tv~v~n~e~~-------------------------r~~~~~~~ 60 (313)
T KOG1407|consen 21 QKVHSVAWNCDGT----------KLASGSFDK-----TVSVWNLERD-------------------------RFRKELVY 60 (313)
T ss_pred hcceEEEEcccCc----------eeeecccCC-----ceEEEEecch-------------------------hhhhhhcc
Confidence 3588999999885 555555433 5667766411 11122234
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
.+|.+.|-.++|.|..+.+||+++.|.+|++||.+. .++...... +..-.-+.|+|++. +++.++.|.
T Consensus 61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~----------~k~~~~i~~-~~eni~i~wsp~g~-~~~~~~kdD 128 (313)
T KOG1407|consen 61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS----------GKCTARIET-KGENINITWSPDGE-YIAVGNKDD 128 (313)
T ss_pred cCCCcchhhheeCCCCCcceEEecCCceEEEEEecc----------CcEEEEeec-cCcceEEEEcCCCC-EEEEecCcc
Confidence 679999999999999889999999999999999987 344554443 33445788999998 899999999
Q ss_pred cEEEEeCCCCCCC-----------------------------------CcccceEeeecCCccEEEEEeecCCCcEEEEE
Q 020480 202 QICLWDINAAPKN-----------------------------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV 246 (325)
Q Consensus 202 ~i~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~ 246 (325)
.|...|.++.+.. ..++++..+++|...+.|+.|+|+| .+||+|
T Consensus 129 ~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G-ryfA~G 207 (313)
T KOG1407|consen 129 RITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG-RYFATG 207 (313)
T ss_pred cEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC-ceEeec
Confidence 9999998775311 3456788899999999999999998 799999
Q ss_pred ecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEe
Q 020480 247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTH 297 (325)
Q Consensus 247 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~ 297 (325)
+.|..+.+||+...-+ +..+..+.=+|..|.|+.+|++ +++.|-.+-+
T Consensus 208 sADAlvSLWD~~ELiC---~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 208 SADALVSLWDVDELIC---ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred cccceeeccChhHhhh---heeeccccCceEEEEeccCcceeeccCccceEEe
Confidence 9999999999998876 7788888999999999999997 7888877766
No 92
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.82 E-value=3.1e-18 Score=141.43 Aligned_cols=198 Identities=18% Similarity=0.253 Sum_probs=150.1
Q ss_pred HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480 34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN 113 (325)
Q Consensus 34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (325)
.+..|+. ++.++...|+.+ ++ ..+++++.-.+|+.. .
T Consensus 59 tF~~H~~--svFavsl~P~~~-----------l~----aTGGgDD~AflW~~~--------------------------~ 95 (399)
T KOG0296|consen 59 TFDKHTD--SVFAVSLHPNNN-----------LV----ATGGGDDLAFLWDIS--------------------------T 95 (399)
T ss_pred ehhhcCC--ceEEEEeCCCCc-----------eE----EecCCCceEEEEEcc--------------------------C
Confidence 3444554 499999999543 32 234456677788764 1
Q ss_pred CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 193 (325)
+. ......+|+..|+++.|+.+| .+||+|+.+|.|+||...+ ......+..--..+.-+.|+|.+. .
T Consensus 96 ge-~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~st----------g~~~~~~~~e~~dieWl~WHp~a~-i 162 (399)
T KOG0296|consen 96 GE-FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVST----------GGEQWKLDQEVEDIEWLKWHPRAH-I 162 (399)
T ss_pred Cc-ceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEccc----------CceEEEeecccCceEEEEeccccc-E
Confidence 22 334567899999999999999 7999999999999999987 233444544556788999999888 8
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee-cc
Q 020480 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-AH 272 (325)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h 272 (325)
|+.|+.||.+.+|.+... ...+.+.+|+..+++-.|.|+| ..++++..||+|++||+.++. |+..+. ..
T Consensus 163 llAG~~DGsvWmw~ip~~------~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~---p~~~~~~~e 232 (399)
T KOG0296|consen 163 LLAGSTDGSVWMWQIPSQ------ALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQ---PLHKITQAE 232 (399)
T ss_pred EEeecCCCcEEEEECCCc------ceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCc---eeEEecccc
Confidence 999999999999999875 3467789999999999999998 578899999999999999997 476664 23
Q ss_pred CCCeeEEEeCCCCCc--cCCCCceEEe
Q 020480 273 QSEVGVSILNASFRL--SHEDTCTCTH 297 (325)
Q Consensus 273 ~~~v~~i~~~p~~~~--~~~~d~~~~~ 297 (325)
..+..++.++..+.. .|+.++.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~ 259 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACG 259 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEE
Confidence 445677777766653 4555554444
No 93
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=6.7e-19 Score=141.70 Aligned_cols=174 Identities=18% Similarity=0.153 Sum_probs=140.1
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-----EEecCCCceEEEEecCCCCCeEE
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-----RLRGHSTEGYGLSWSKFKEGHLL 195 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~~~p~~~~~l~ 195 (325)
...|.+.|+++...+...+++++|+.||.|.+||+..........-..+... .-.+|.-.|.++.|-|...+.+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 3568999999999998778999999999999999986432211111111111 11368889999999999998999
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC--CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH--EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
+++.|.+++|||..+.+. ...|+ ..+.|++-+|+|-. -.++|+|..|-.|++.|+.++.. .+++.+|.
T Consensus 119 ssSFDhtlKVWDtnTlQ~------a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~---sH~LsGHr 188 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQE------AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF---SHTLSGHR 188 (397)
T ss_pred cccccceEEEeeccccee------eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc---eeeecccc
Confidence 999999999999998632 33343 45679999998842 25788999999999999999996 89999999
Q ss_pred CCeeEEEeCCCCCc---cCCCCceEEeeecceee
Q 020480 274 SEVGVSILNASFRL---SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 274 ~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~~~ 304 (325)
+.|.+|.|+|...+ +|+.|+.|++||+|...
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeeccc
Confidence 99999999999884 89999999999998763
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.81 E-value=9.4e-19 Score=159.18 Aligned_cols=169 Identities=24% Similarity=0.314 Sum_probs=146.0
Q ss_pred CCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecC
Q 020480 109 FGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK 188 (325)
Q Consensus 109 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 188 (325)
|....+........+|.+.|.++++.. +..++++|+.|.++++||..+ + .-..++.+|.+.|.++...+
T Consensus 233 ~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s--------g--~C~~~l~gh~stv~~~~~~~ 301 (537)
T KOG0274|consen 233 WDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST--------G--ECTHSLQGHTSSVRCLTIDP 301 (537)
T ss_pred eecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC--------C--cEEEEecCCCceEEEEEccC
Confidence 333445555555789999999999987 447999999999999999887 4 44788999999999998865
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480 189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS 268 (325)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 268 (325)
. .+++|+.|.+|++|++..+ .+++.+.+|...|+++..+ + .++++|+.|++|++||+++.++ +.+
T Consensus 302 ~---~~~sgs~D~tVkVW~v~n~------~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~c---l~s 366 (537)
T KOG0274|consen 302 F---LLVSGSRDNTVKVWDVTNG------ACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKC---LKS 366 (537)
T ss_pred c---eEeeccCCceEEEEeccCc------ceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhcee---eee
Confidence 3 7889999999999999977 5688888899999999997 3 5899999999999999998885 999
Q ss_pred eeccCCCeeEEEeCC-CCCccCCCCceEEeeeccee
Q 020480 269 VVAHQSEVGVSILNA-SFRLSHEDTCTCTHRHSRYL 303 (325)
Q Consensus 269 ~~~h~~~v~~i~~~p-~~~~~~~~d~~~~~~~~~~~ 303 (325)
+.+|...|.++.+.+ .-.++|+.|+++++||++..
T Consensus 367 l~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 367 LSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred ecCCcceEEEEEecCcceEEeeeeccceEeecCCch
Confidence 999999999999999 55569999999999998776
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=3.3e-18 Score=158.67 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=173.9
Q ss_pred hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEEC-CCCCCCcc
Q 020480 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQL-PLDDSEND 95 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~ 95 (325)
++.+.+.|+.|.|.....+..|... +.+|.|+|++. .++.|+.. .-++||.... +......+
T Consensus 47 vl~~~~~~~~~l~k~l~~m~~h~~s--v~CVR~S~dG~----------~lAsGSDD-----~~v~iW~~~~~~~~~~fgs 109 (942)
T KOG0973|consen 47 VLDEKEEKNENLPKHLCTMDDHDGS--VNCVRFSPDGS----------YLASGSDD-----RLVMIWERAEIGSGTVFGS 109 (942)
T ss_pred ccchhhhhhcccchhheeeccccCc--eeEEEECCCCC----------eEeeccCc-----ceEEEeeecccCCcccccc
Confidence 3455556666667666677777655 77899999985 56555543 4678887752 11111100
Q ss_pred cCCCCcccCCCCCCCCCCCceEEE-EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480 96 ARHYDDDRSDFGGFGCANGKVQII-QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL 174 (325)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 174 (325)
. ... . ...+.+.+ ...+|.+.|..++|+|++ .++|+++.|++|.+|+..+ ...+.++
T Consensus 110 ~--g~~--~-------~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~t----------F~~~~vl 167 (942)
T KOG0973|consen 110 T--GGA--K-------NVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKT----------FELLKVL 167 (942)
T ss_pred c--ccc--c-------ccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEcccc----------ceeeeee
Confidence 0 000 0 11233333 345799999999999988 7999999999999999988 4667889
Q ss_pred ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC----------------------------------------
Q 020480 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN---------------------------------------- 214 (325)
Q Consensus 175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~---------------------------------------- 214 (325)
.+|.+.|..+.|.|-|. +|++-+.|++|+||.+..-...
T Consensus 168 ~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST 246 (942)
T ss_pred ecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence 99999999999999999 8999999999999995441100
Q ss_pred ------CcccceEeeecCCccEEEEEeecC--------C----C----cEEEEEecCCcEEEEEccCCCCCCCeeEe-ec
Q 020480 215 ------KSLEAMQIFKVHEGVVEDVAWHLR--------H----E----YLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VA 271 (325)
Q Consensus 215 ------~~~~~~~~~~~~~~~v~~v~~~p~--------~----~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 271 (325)
...+.-..+-+|..++.+++|+|. | . .++|+|+.|++|-||.....+ |+..+ .-
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R---Pl~vi~~l 323 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR---PLFVIHNL 323 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC---chhhhhhh
Confidence 000122345689999999999982 1 1 178999999999999997666 45544 33
Q ss_pred cCCCeeEEEeCCCCC--ccCCCCceEEeeec
Q 020480 272 HQSEVGVSILNASFR--LSHEDTCTCTHRHS 300 (325)
Q Consensus 272 h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~ 300 (325)
....|.+++|+|+|. +.+|.||++.+...
T Consensus 324 f~~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 324 FNKSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred hcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 467899999999998 48999999998654
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=2e-18 Score=139.29 Aligned_cols=152 Identities=18% Similarity=0.283 Sum_probs=122.8
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCC-CeEEEEe
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSGS 198 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~~l~s~s 198 (325)
....|.++|.+++|+.+| ..+++|+.|+.+++||+.+ ..+..+..|.++|..+.|-+... ..|+|||
T Consensus 67 a~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S-----------~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS 134 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLAS-----------GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGS 134 (347)
T ss_pred hhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccC-----------CCeeeeeecccceeEEEEecCCCcceeEecc
Confidence 456799999999999999 7999999999999999998 23566778999999999976543 3789999
Q ss_pred CCCcEEEEeCCCCCCCCc------------------------------------------------c-------------
Q 020480 199 DDAQICLWDINAAPKNKS------------------------------------------------L------------- 217 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~------------------------------------------------~------------- 217 (325)
.|.+|+.||.|....... .
T Consensus 135 WDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a 214 (347)
T KOG0647|consen 135 WDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA 214 (347)
T ss_pred cccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE
Confidence 999999999987521100 0
Q ss_pred ------------------cceEeeecCCc---------cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480 218 ------------------EAMQIFKVHEG---------VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (325)
Q Consensus 218 ------------------~~~~~~~~~~~---------~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 270 (325)
..-.+|++|.. .|++|+|+|.. ..|+++|.||+..+||-..... +.+.+
T Consensus 215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~k---Lk~s~ 290 (347)
T KOG0647|consen 215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTK---LKTSE 290 (347)
T ss_pred eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhh---hhccC
Confidence 01123455552 47789999986 6899999999999999887764 77888
Q ss_pred ccCCCeeEEEeCCCCCc
Q 020480 271 AHQSEVGVSILNASFRL 287 (325)
Q Consensus 271 ~h~~~v~~i~~~p~~~~ 287 (325)
.|..+|++.+|+.+|.+
T Consensus 291 ~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 291 THPQPITCCSFNRNGSI 307 (347)
T ss_pred cCCCccceeEecCCCCE
Confidence 89999999999999996
No 97
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=9.2e-19 Score=162.34 Aligned_cols=172 Identities=19% Similarity=0.228 Sum_probs=143.8
Q ss_pred cCCCeeEEEecCCCCcEEEEEe--cCCeEEEEeCCCCCCCCCCC--CCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 124 HDGEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLD--GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~--~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
+...|.++..+|++ ..+|+|+ .||.+++|+........... .-...+..+..|.+.|.++.|+|+|. +||+|+.
T Consensus 12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-YLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-eEeeccC
Confidence 35679999999999 7999999 89999999986543221111 12355677889999999999999999 8999999
Q ss_pred CCcEEEEeCCCCC------------CCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCee
Q 020480 200 DAQICLWDINAAP------------KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ 267 (325)
Q Consensus 200 dg~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 267 (325)
|+.|.||...... .....+++..+.+|.+.|.+++|+|++ .++|+++.|++|.||+.++.+ .+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~---~~~ 165 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFE---LLK 165 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccce---eee
Confidence 9999999987310 112334677889999999999999986 799999999999999999996 489
Q ss_pred EeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480 268 SVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR 301 (325)
Q Consensus 268 ~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~ 301 (325)
.+.+|.+.|-.+.|+|-|++ +-++|.++++|...
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence 99999999999999999997 77999999999843
No 98
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.6e-18 Score=154.66 Aligned_cols=163 Identities=12% Similarity=0.121 Sum_probs=131.4
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
..+|.+.|..+.|+..+ +|++++.|.+|+||++.. ...+..| .|.+.|+|++|+|...++|++|+.|
T Consensus 365 f~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~----------~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 365 FKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR----------KECLKVF-SHNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred hhccchhheecccccCC--eeEeccccccEEeecCCC----------cceeeEE-ecCCeeEEEEecccCCCcEeecccc
Confidence 45799999999999965 899999999999999976 3335555 5999999999999988899999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee---------c
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV---------A 271 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~ 271 (325)
|.|+||++...+ +..+..-..-|++++|.|+| ...+.|+.+|.+++|+.+..+. ..... .
T Consensus 432 ~KvRiWsI~d~~-------Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~---~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 432 GKVRLWSISDKK-------VVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKL---VSDFHIRLHNKKKKQ 500 (712)
T ss_pred cceEEeecCcCe-------eEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeE---EEeeeEeeccCcccc
Confidence 999999998642 33444445789999999998 5888999999999999988763 22221 1
Q ss_pred cCCCeeEEEeCCCCC---ccCCCCceEEeeec--ceeeeccC
Q 020480 272 HQSEVGVSILNASFR---LSHEDTCTCTHRHS--RYLLYKFP 308 (325)
Q Consensus 272 h~~~v~~i~~~p~~~---~~~~~d~~~~~~~~--~~~~~~~~ 308 (325)
|. .|+.+.|.|... +..+.|..+++++. ..++.+|.
T Consensus 501 ~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 501 GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 33 799999997543 58889999999998 55555543
No 99
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.80 E-value=4.7e-19 Score=144.33 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=130.1
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
.-+..+|.|+.|+.+. .++|+|+.||.|++|.+.+ +.+ ++.+. .|+..|+++.|+.++. .+++++.|
T Consensus 260 MMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~t--------G~C--lRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD 327 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIET--------GQC--LRRFDRAHTKGVTCLSFSRDNS-QILSASFD 327 (508)
T ss_pred eecccceEEEeecccH-HHhhccCcCCcEEEEEEec--------chH--HHHhhhhhccCeeEEEEccCcc-hhhccccc
Confidence 4578999999999988 7999999999999999988 433 55665 8999999999999999 79999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee--ccCCCeeE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV--AHQSEVGV 278 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~ 278 (325)
.++++--++.+ +++..+.+|++.|+...|.++| +.+++++.||+|++|+..+.+| +.+++ +...+|++
T Consensus 328 ~tvRiHGlKSG------K~LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC---~~Tfk~~~~d~~vns 397 (508)
T KOG0275|consen 328 QTVRIHGLKSG------KCLKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTEC---LSTFKPLGTDYPVNS 397 (508)
T ss_pred ceEEEeccccc------hhHHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhh---hhhccCCCCccccee
Confidence 99999999988 6788999999999999999998 7888999999999999999987 55553 23457788
Q ss_pred EEeCCCCC---ccCCCCceEEee
Q 020480 279 SILNASFR---LSHEDTCTCTHR 298 (325)
Q Consensus 279 i~~~p~~~---~~~~~d~~~~~~ 298 (325)
+..-|... +.+....++.+-
T Consensus 398 v~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 398 VILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred EEEcCCCCceEEEEcCCCeEEEE
Confidence 77776544 355555565554
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=9.3e-19 Score=137.34 Aligned_cols=171 Identities=17% Similarity=0.166 Sum_probs=137.9
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEec-CCCCCeEEEEeCCC
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS-KFKEGHLLSGSDDA 201 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~s~s~dg 201 (325)
.|...|..+...--| .+||+|+.|++|+|+..+.. +..+.+..+.||.++|+.++|. |.-.++|++++.||
T Consensus 9 ~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n-------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNN-------GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred hhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCC-------CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence 577778777777767 79999999999999999872 2236688999999999999995 44334999999999
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC-cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
.|.||.-..+.- ........|...|++++|.|.+. ..|++++.||.|.|.+.+.......-.....|.-.|++++
T Consensus 81 kVIiWke~~g~w----~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 81 KVIIWKEENGRW----TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred eEEEEecCCCch----hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 999999887743 34556788999999999999643 5778999999999999998743334455578999999999
Q ss_pred eCCC---C-------------CccCCCCceEEeeecceeee
Q 020480 281 LNAS---F-------------RLSHEDTCTCTHRHSRYLLY 305 (325)
Q Consensus 281 ~~p~---~-------------~~~~~~d~~~~~~~~~~~~~ 305 (325)
|.|. | ..+|+.|..+++|....-.|
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w 197 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW 197 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcch
Confidence 9986 4 13899999999998765333
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.79 E-value=7.6e-19 Score=155.68 Aligned_cols=218 Identities=14% Similarity=0.199 Sum_probs=163.9
Q ss_pred hhhhHHHHhhhHhcChhHHH-HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYD-LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS 92 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~-~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 92 (325)
....++++|+|++...+... ........|-..++.+.+ .+. .+++.|.... .|.++...
T Consensus 30 s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~--------~~l~~g~~D~-----~i~v~~~~------ 89 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDK--------GRLVVGGMDT-----TIIVFKLS------ 89 (745)
T ss_pred ecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccC--------cceEeecccc-----eEEEEecC------
Confidence 34467899999996655443 222223333233355554 211 3566666533 45555442
Q ss_pred CcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480 93 ENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL 172 (325)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 172 (325)
....+....+|++.|.++....++ .+++|+.|.++++|.... . ..
T Consensus 90 ---------------------~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~----------l--~~ 134 (745)
T KOG0301|consen 90 ---------------------QAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE----------L--VY 134 (745)
T ss_pred ---------------------CCCchhhhhccccceeeeecCCcC--ceEecccccceEEecchh----------h--hc
Confidence 112334567899999999988877 399999999999998765 2 33
Q ss_pred EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcE
Q 020480 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252 (325)
Q Consensus 173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i 252 (325)
.+.+|+..|+++..-|.+ .++||+.|.+|++|.-. ..+++|.+|+..|..+++-+++ .|+||+.||.|
T Consensus 135 ~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~--------~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~I 202 (745)
T KOG0301|consen 135 SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG--------TLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSI 202 (745)
T ss_pred ccCCcchheeeeeecCCC--cEEeccCcceeeeccCC--------chhhhhccchhheeeeEEecCC--CeEeecCCceE
Confidence 488999999999999987 59999999999999875 3578899999999999999864 57899999999
Q ss_pred EEEEccCCCCCCCeeEeeccCCCeeEEEeCC-CCCc-cCCCCceEEeeecce
Q 020480 253 LIWDLRTPSVSKPVQSVVAHQSEVGVSILNA-SFRL-SHEDTCTCTHRHSRY 302 (325)
Q Consensus 253 ~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p-~~~~-~~~~d~~~~~~~~~~ 302 (325)
++|++ ++.+ +....+|+.-|.+++..+ ++.+ ++|.|+++++|+...
T Consensus 203 r~w~~-~ge~---l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 203 RLWDL-DGEV---LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred EEEec-cCce---eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 99999 5554 889999999999999544 4444 999999999998764
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=2.9e-18 Score=151.07 Aligned_cols=172 Identities=17% Similarity=0.217 Sum_probs=140.2
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
...|...|.|+++-..+..++|+||-|+.|.+||++......-..........+. |+...|++++-++.+. .+++|+.
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgt 191 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGT 191 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCc
Confidence 3459999999999444447999999999999999987432110001112233344 8899999999999997 8999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
.+.+++||.++..+ +..+.+|+..|.++..+++| +.+++++.||+|++||++..++ +.++..|+..|+++
T Consensus 192 ek~lr~wDprt~~k------imkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrC---l~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKK------IMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRC---LATYIVHKEGVWAL 261 (735)
T ss_pred ccceEEeccccccc------eeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccce---eeeEEeccCceEEE
Confidence 99999999999854 56678999999999999998 6888999999999999999997 88899999999999
Q ss_pred EeCCCCC--ccCCCCceEEeeeccee
Q 020480 280 ILNASFR--LSHEDTCTCTHRHSRYL 303 (325)
Q Consensus 280 ~~~p~~~--~~~~~d~~~~~~~~~~~ 303 (325)
..+|+-. ++|+.|+.+..=+++..
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCc
Confidence 9998765 48888988887666654
No 103
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=4.8e-18 Score=136.82 Aligned_cols=162 Identities=17% Similarity=0.258 Sum_probs=131.7
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC--CCeEEEEeC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK--EGHLLSGSD 199 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~~l~s~s~ 199 (325)
..|.-.|..+.|-|.+..+|.+++.|.+++|||.++ .+....|. ..+.|++-+|+|-. ..++++|..
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT----------lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr 166 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT----------LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTR 166 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeeccc----------ceeeEEee-cCceeehhhcChhhhcceEEEEecC
Confidence 358889999999998777999999999999999987 22222232 34578888888753 237888899
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC-C-----------CCCee
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS-V-----------SKPVQ 267 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~-----------~~~~~ 267 (325)
|-.|++.|+..+ .+.+++.+|...|.++.|+|....+|++|+.||.|++||+|... + ...++
T Consensus 167 ~~~VrLCDi~SG------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~ 240 (397)
T KOG4283|consen 167 DVQVRLCDIASG------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK 240 (397)
T ss_pred CCcEEEEeccCC------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence 999999999998 56888999999999999999988999999999999999999652 1 01122
Q ss_pred EeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 268 SVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 268 ~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
.-.+|.+.|+.++|..+|+. +++.|..+++|+.
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 23567889999999999984 8889999999975
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.1e-17 Score=135.73 Aligned_cols=176 Identities=14% Similarity=0.163 Sum_probs=134.9
Q ss_pred EEEEEeccCCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEE
Q 020480 117 QIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (325)
Q Consensus 117 ~~~~~~~h~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 195 (325)
+.-....|.+.|+++.|.+.- ...|.+|+.||.|.+|+... +..+.++++|.+.|+.++.+|.+. +.+
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----------W~~~~slK~H~~~Vt~lsiHPS~K-LAL 143 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----------WELLKSLKAHKGQVTDLSIHPSGK-LAL 143 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC----------eEEeeeecccccccceeEecCCCc-eEE
Confidence 344467899999999999864 13688999999999999977 677889999999999999999999 899
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccc-----------------------eEeee--------c--CCccEEEEEeecCCCcE
Q 020480 196 SGSDDAQICLWDINAAPKNKSLEA-----------------------MQIFK--------V--HEGVVEDVAWHLRHEYL 242 (325)
Q Consensus 196 s~s~dg~i~iwd~~~~~~~~~~~~-----------------------~~~~~--------~--~~~~v~~v~~~p~~~~~ 242 (325)
+.+.|+.+++||+-.++....... +..++ . ....+.++.|- .+..
T Consensus 144 sVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~~ 221 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGSE 221 (362)
T ss_pred EEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCce
Confidence 999999999999987754311100 00000 0 01224444443 2468
Q ss_pred EEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe--CCCCCc--cCCCCceEEeeecceeeeccC
Q 020480 243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL--NASFRL--SHEDTCTCTHRHSRYLLYKFP 308 (325)
Q Consensus 243 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~--~p~~~~--~~~~d~~~~~~~~~~~~~~~~ 308 (325)
+++|+.++.|++||..... +...+.+|...|-++.+ +|.+.+ ++|.||.+++|++++-.-..|
T Consensus 222 L~vG~d~~~i~~~D~ds~~---~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~ 288 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDT---PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRP 288 (362)
T ss_pred EEEecCCceEEEeccCCCc---cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCc
Confidence 8899999999999999865 58899999999999985 455554 899999999999887644443
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=5.7e-18 Score=136.73 Aligned_cols=157 Identities=18% Similarity=0.282 Sum_probs=120.6
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
-...|.+++|+|....++++|+.||+|++|++... +...+ .....|.++|.+++|+.+|. .+++|+.|+.+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-------g~~~~-ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~ 96 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-------GQLVP-KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQA 96 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecC-------Ccccc-hhhhccCCCeEEEEEccCCc-eEEeeccCCce
Confidence 45789999999966578889999999999999862 22233 34567999999999999998 89999999999
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~ 282 (325)
++||+.+++ ...+..|..+|..+.|-+.. ..+|++|+.|.+|++||+|... ++.++. ..+.+.++..-
T Consensus 97 k~wDL~S~Q-------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~---pv~t~~-LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 97 KLWDLASGQ-------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN---PVATLQ-LPERVYAADVL 165 (347)
T ss_pred EEEEccCCC-------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC---eeeeee-ccceeeehhcc
Confidence 999999873 55678899999999998743 2489999999999999999877 466654 34555555444
Q ss_pred CCCCccCCCCceEEeeec
Q 020480 283 ASFRLSHEDTCTCTHRHS 300 (325)
Q Consensus 283 p~~~~~~~~d~~~~~~~~ 300 (325)
..-...+..+..+.++++
T Consensus 166 ~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNL 183 (347)
T ss_pred CceeEEEecCCcEEEEEc
Confidence 333334444556666655
No 106
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=5.6e-18 Score=141.27 Aligned_cols=169 Identities=20% Similarity=0.290 Sum_probs=136.0
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
.-+|.++|..++|+|.+.+.||+|++|.+|.||.+....... .-..|+..+.+|+..|--++|+|.-.+.|+|++.|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc---CcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 358999999999999998999999999999999998743322 12367788999999999999999999899999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC-CeeEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS-EVGVS 279 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~i 279 (325)
..|.+|++.++.. +-++. |...|++++|+.+| .+|++.+.|..|||||.|+++. +..-.+|.+ .-..+
T Consensus 154 n~v~iWnv~tgea------li~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~---v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 154 NTVSIWNVGTGEA------LITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTV---VSEGVAHEGAKPARA 222 (472)
T ss_pred ceEEEEeccCCce------eeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcE---eeecccccCCCccee
Confidence 9999999999843 44455 99999999999998 6999999999999999999984 666566754 23445
Q ss_pred EeCCCCCc-----cCCCCceEEeeeccee
Q 020480 280 ILNASFRL-----SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 280 ~~~p~~~~-----~~~~d~~~~~~~~~~~ 303 (325)
.|-.+|.+ +.-.+..+-+|+-..+
T Consensus 223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred EEeccCceeeeccccccccceeccCcccc
Confidence 67666664 3334556666765443
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=1.8e-18 Score=142.78 Aligned_cols=248 Identities=11% Similarity=0.131 Sum_probs=167.3
Q ss_pred hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
+..-|.++|||++....+...+..|... +.-+.+.... .+-+|. ++.+..|.+..|.....
T Consensus 84 SGs~DG~VkiWnlsqR~~~~~f~AH~G~--V~Gi~v~~~~-----------~~tvgd------DKtvK~wk~~~~p~~ti 144 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQRECIRTFKAHEGL--VRGICVTQTS-----------FFTVGD------DKTVKQWKIDGPPLHTI 144 (433)
T ss_pred ccccCceEEEEehhhhhhhheeecccCc--eeeEEecccc-----------eEEecC------CcceeeeeccCCcceee
Confidence 4456789999999999998888888755 3333333211 122221 23444554443321111
Q ss_pred cc------------cCCCCcccCCCCCCCCCCCceEEEEEec-cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCC
Q 020480 94 ND------------ARHYDDDRSDFGGFGCANGKVQIIQQIN-HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS 160 (325)
Q Consensus 94 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~ 160 (325)
.- .+.+-.....+..|+.... ..++.+. -...|.++.|+|-...+|++|+.|+.|.+||++.
T Consensus 145 lg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~--~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~--- 219 (433)
T KOG0268|consen 145 LGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRD--NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ--- 219 (433)
T ss_pred eccccccccccccccccccccCceeeecccccC--CccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc---
Confidence 11 1111111122223322111 1112233 2357899999999888999999999999999998
Q ss_pred CCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC
Q 020480 161 KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240 (325)
Q Consensus 161 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 240 (325)
..|+..+. -+.....++|+|.. ..|++|+.|..++.||++... .++..+.+|.+.|.++.|+|.|
T Consensus 220 -------~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~-----~p~~v~~dhvsAV~dVdfsptG- 284 (433)
T KOG0268|consen 220 -------ASPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS-----RPLNVHKDHVSAVMDVDFSPTG- 284 (433)
T ss_pred -------CCccceee-eeccccceecCccc-cceeeccccccceehhhhhhc-----ccchhhcccceeEEEeccCCCc-
Confidence 34454432 23345689999954 479999999999999999765 4678889999999999999998
Q ss_pred cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
.-|++||.|.+||||..+.+......++ .-...|.||.|+.+.++ +||+|+.+++|..+-
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 5899999999999999998763111111 12356999999999985 999999999997543
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=3.9e-18 Score=150.27 Aligned_cols=168 Identities=21% Similarity=0.201 Sum_probs=140.5
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEe-cCCCCCeEEEEeCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW-SKFKEGHLLSGSDD 200 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~p~~~~~l~s~s~d 200 (325)
-.|...|+.+..+..+ +.|++++.|-+|++|+... +......++..|.+.|.+++. .++.. ++|||+.|
T Consensus 70 e~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~--------~~~~c~stir~H~DYVkcla~~ak~~~-lvaSgGLD 139 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHK--------DNTFCMSTIRTHKDYVKCLAYIAKNNE-LVASGGLD 139 (735)
T ss_pred hhhHhHHhhHHhhcCC-CceEEecCCceEEEeeccc--------CcchhHhhhhcccchheeeeecccCce-eEEecCCC
Confidence 3589999999999888 6899999999999999987 212335567889999999999 66665 99999999
Q ss_pred CcEEEEeCCCCCC-----CCcccceEeee-cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC
Q 020480 201 AQICLWDINAAPK-----NKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (325)
Q Consensus 201 g~i~iwd~~~~~~-----~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 274 (325)
+.|.+||+..+.. ... .....+. ++...|++++.++.+ ..|++|+..+.+++||.|+.+. +..+.+|+.
T Consensus 140 ~~IflWDin~~~~~l~~s~n~-~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~k---imkLrGHTd 214 (735)
T KOG0308|consen 140 RKIFLWDINTGTATLVASFNN-VTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKK---IMKLRGHTD 214 (735)
T ss_pred ccEEEEEccCcchhhhhhccc-cccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccc---eeeeecccc
Confidence 9999999997732 011 1122223 788899999999987 7999999999999999999985 888899999
Q ss_pred CeeEEEeCCCCC--ccCCCCceEEeeecceee
Q 020480 275 EVGVSILNASFR--LSHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 275 ~v~~i~~~p~~~--~~~~~d~~~~~~~~~~~~ 304 (325)
-|.++..+++|. +++|.|+++++|+++...
T Consensus 215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred ceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 999999999997 599999999999987654
No 109
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3e-18 Score=159.80 Aligned_cols=173 Identities=22% Similarity=0.317 Sum_probs=138.7
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
.-.|.+.|..+.|++..+++||+|+.||.|.|||+....... .+- -..-.+.|.+++|+..-...|++++.+
T Consensus 112 ~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~------~~~--~~~~~~eI~~lsWNrkvqhILAS~s~s 183 (1049)
T KOG0307|consen 112 KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF------TPG--SQAPPSEIKCLSWNRKVSHILASGSPS 183 (1049)
T ss_pred hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC------CCC--CCCCcccceEeccchhhhHHhhccCCC
Confidence 446999999999999987899999999999999998722111 111 122457899999999888899999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCC--ccEEEEEeecCCCcEEEEEecCC---cEEEEEccCCCCCCCeeEeeccCCC
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHE--GVVEDVAWHLRHEYLFGSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
|.+.|||+|..+ ++-.+..+. ..+..++|||++.+.+++++.|. .|.+||+|.... |++.+.+|...
T Consensus 184 g~~~iWDlr~~~------pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass--P~k~~~~H~~G 255 (1049)
T KOG0307|consen 184 GRAVIWDLRKKK------PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS--PLKILEGHQRG 255 (1049)
T ss_pred CCceeccccCCC------cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC--chhhhcccccc
Confidence 999999999763 233333333 35788999999988888888664 599999998776 78999999999
Q ss_pred eeEEEeCCCC-C--ccCCCCceEEeeecce--eeeccCe
Q 020480 276 VGVSILNASF-R--LSHEDTCTCTHRHSRY--LLYKFPF 309 (325)
Q Consensus 276 v~~i~~~p~~-~--~~~~~d~~~~~~~~~~--~~~~~~~ 309 (325)
|.++.|++.+ + ++++.|+.+.+|+... +...+|.
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 9999999976 3 4899999999998877 5566654
No 110
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=4e-17 Score=131.14 Aligned_cols=169 Identities=19% Similarity=0.345 Sum_probs=129.5
Q ss_pred eEEEEEec--cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-----ecCCCceEEEEecC
Q 020480 116 VQIIQQIN--HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-----RGHSTEGYGLSWSK 188 (325)
Q Consensus 116 ~~~~~~~~--h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~p 188 (325)
++.+..+. +-+.|.|+.|.|++ ..+++- .|..|.+|++.+... .+..+ ..|....++-+|+|
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns-~klasm-~dn~i~l~~l~ess~---------~vaev~ss~s~e~~~~ftsg~Wsp 180 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNS-DKLASM-DDNNIVLWSLDESSK---------IVAEVLSSESAEMRHSFTSGAWSP 180 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCC-CeeEEe-ccCceEEEEcccCcc---------hheeecccccccccceecccccCC
Confidence 34443443 56799999999977 566664 488999999987221 01111 13566788999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480 189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS 268 (325)
Q Consensus 189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 268 (325)
......+....|+++..||+|+..+.. ..-.+|...|..+.|+|+.+.+|++|++||.|+|||.|..+. |+..
T Consensus 181 HHdgnqv~tt~d~tl~~~D~RT~~~~~-----sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~e 253 (370)
T KOG1007|consen 181 HHDGNQVATTSDSTLQFWDLRTMKKNN-----SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQE 253 (370)
T ss_pred CCccceEEEeCCCcEEEEEccchhhhc-----chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccc
Confidence 554445556678999999999875432 223678889999999999999999999999999999999886 8999
Q ss_pred eeccCCCeeEEEeCCCCC---ccCCCCceEEeeecce
Q 020480 269 VVAHQSEVGVSILNASFR---LSHEDTCTCTHRHSRY 302 (325)
Q Consensus 269 ~~~h~~~v~~i~~~p~~~---~~~~~d~~~~~~~~~~ 302 (325)
+.+|.-.|++|.|+|.-. +++|.|..+.++....
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 999999999999999433 4899999988875433
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.1e-16 Score=130.03 Aligned_cols=155 Identities=23% Similarity=0.267 Sum_probs=120.1
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCC-CeEEEEeC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSGSD 199 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~~l~s~s~ 199 (325)
...|.+.|++++.+. .++|+|+.|-+|+|||++. ...+..+..|.+.|+++.|.+.-. ..|++|+.
T Consensus 39 ~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k----------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 39 FSAHAGSITALAVSG---PYVASGSSDETIHIYDMRK----------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred ccccccceeEEEecc---eeEeccCCCCcEEEEeccc----------hhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 346999999999975 6999999999999999987 444677888999999999987642 36999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
||.|.+|+...- .++..+++|...|+.++.||.+ .+.++.+.|+.+++||+-.++. ...+. -....+.|
T Consensus 106 DG~i~iw~~~~W------~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~---a~v~~-L~~~at~v 174 (362)
T KOG0294|consen 106 DGHIIIWRVGSW------ELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRV---AFVLN-LKNKATLV 174 (362)
T ss_pred CCcEEEEEcCCe------EEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCcc---ceeec-cCCcceee
Confidence 999999999865 5688999999999999999997 5888999999999999988874 12111 12222337
Q ss_pred EeCCCCC-ccCCCCceEEeee
Q 020480 280 ILNASFR-LSHEDTCTCTHRH 299 (325)
Q Consensus 280 ~~~p~~~-~~~~~d~~~~~~~ 299 (325)
.|+|.|. +..+....+-+|+
T Consensus 175 ~w~~~Gd~F~v~~~~~i~i~q 195 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGRNKIDIYQ 195 (362)
T ss_pred EEcCCCCEEEEEeccEEEEEe
Confidence 7777776 3222333444443
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.8e-16 Score=120.55 Aligned_cols=160 Identities=17% Similarity=0.130 Sum_probs=128.9
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe----c---CCCceEEEEecCCCCCe
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR----G---HSTEGYGLSWSKFKEGH 193 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~----~---h~~~v~~l~~~p~~~~~ 193 (325)
..+|++.|.++-- -.+ .++++|+.|.+|++||++-. ..+.++. + .++.|.+++..|.|. +
T Consensus 179 ~sghtghilalys-wn~-~m~~sgsqdktirfwdlrv~----------~~v~~l~~~~~~~glessavaav~vdpsgr-l 245 (350)
T KOG0641|consen 179 LSGHTGHILALYS-WNG-AMFASGSQDKTIRFWDLRVN----------SCVNTLDNDFHDGGLESSAVAAVAVDPSGR-L 245 (350)
T ss_pred ecCCcccEEEEEE-ecC-cEEEccCCCceEEEEeeecc----------ceeeeccCcccCCCcccceeEEEEECCCcc-e
Confidence 3468888877642 224 69999999999999999862 1122221 1 236799999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-CCCeeEeecc
Q 020480 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAH 272 (325)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h 272 (325)
|++|..|.++.+||++.+ ..++.+..|+..|.++.|+|. ..++++|+.|..|++-|+...-. .-++.....|
T Consensus 246 l~sg~~dssc~lydirg~------r~iq~f~phsadir~vrfsp~-a~yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGG------RMIQRFHPHSADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred eeeccCCCceEEEEeeCC------ceeeeeCCCccceeEEEeCCC-ceEEEEecccceEEEeecccchhhcCceEEEEec
Confidence 999999999999999988 568889999999999999996 58999999999999999985421 1256666789
Q ss_pred CCCeeEEEeCCCCC--ccCCCCceEEeeec
Q 020480 273 QSEVGVSILNASFR--LSHEDTCTCTHRHS 300 (325)
Q Consensus 273 ~~~v~~i~~~p~~~--~~~~~d~~~~~~~~ 300 (325)
+..+-.+.|+|+.- ++.+.|.++.+|-+
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEecc
Confidence 99999999999764 48889999999964
No 113
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=4.5e-17 Score=130.98 Aligned_cols=210 Identities=18% Similarity=0.305 Sum_probs=153.5
Q ss_pred cCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceE
Q 020480 38 HALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQ 117 (325)
Q Consensus 38 ~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (325)
+..++|...+.|.|+.... + ..++..+ ..++.+|++..-...... ...+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~----~--pdlLATs------~D~LRlWri~~ee~~~~~------------------~~~L~ 142 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGV----Y--PDLLATS------SDFLRLWRIGDEESRVEL------------------QSVLN 142 (364)
T ss_pred CCCCCCccceEecCCcccc----C--cchhhcc------cCeEEEEeccCcCCceeh------------------hhhhc
Confidence 5678899999999987532 1 1333222 248999988521000000 01111
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
.-+...+..++++..|+.-.++++.+.+-|.+..|||+.... .......+..|..+|++++|...+...|+++
T Consensus 143 ~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv 215 (364)
T KOG0290|consen 143 NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASV 215 (364)
T ss_pred cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-------ccceeeEEEecCcceeEEEeccCccceEEEe
Confidence 112345778999999999888999999999999999998720 1222345779999999999999888899999
Q ss_pred eCCCcEEEEeCCCCCCCCc------------------------------------------ccceEeeecCCccEEEEEe
Q 020480 198 SDDAQICLWDINAAPKNKS------------------------------------------LEAMQIFKVHEGVVEDVAW 235 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~------------------------------------------~~~~~~~~~~~~~v~~v~~ 235 (325)
+.||++|+||+|....+.. -.++..+++|.+.|+.++|
T Consensus 216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW 295 (364)
T KOG0290|consen 216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW 295 (364)
T ss_pred cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe
Confidence 9999999999987642200 0245567889999999999
Q ss_pred ecCCCcEEEEEecCCcEEEEEccCCCC---CCCeeEeeccCCCeeEEEeCCCC
Q 020480 236 HLRHEYLFGSVGDDQYLLIWDLRTPSV---SKPVQSVVAHQSEVGVSILNASF 285 (325)
Q Consensus 236 ~p~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~i~~~p~~ 285 (325)
.|.....|++||+|....+||+..... ..|+..+. -.+.|+.|.|++..
T Consensus 296 aPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 296 APHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ 347 (364)
T ss_pred cCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccC
Confidence 999889999999999999999986542 23455544 46789999999754
No 114
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=8.9e-18 Score=140.82 Aligned_cols=197 Identities=17% Similarity=0.311 Sum_probs=141.9
Q ss_pred HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEE----------------
Q 020480 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLM---------------- 81 (325)
Q Consensus 18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------------- 81 (325)
+|-++.|+..++.+...+... +.....+++|.|++. ++++|+... .+.
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~----------~~V~Gs~dr-----~i~~wdlDgn~~~~W~gvr 353 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGF----------RFVTGSPDR-----TIIMWDLDGNILGNWEGVR 353 (519)
T ss_pred hHheeeccCCcchhhhhcccC-cCCCcceeEEccCCc----------eeEecCCCC-----cEEEecCCcchhhcccccc
Confidence 355899999999888555444 666788999999986 455555432 222
Q ss_pred ---EEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEE--------EEeccCCCeeEEEecCCCCcEEEEEecCCeE
Q 020480 82 ---LAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII--------QQINHDGEVNRARYMPQNPFLIATKTVSAEV 150 (325)
Q Consensus 82 ---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v 150 (325)
++++.+...+...-... .++++.++ ..+....+|+++..+.++ +++.+--.+..+
T Consensus 354 ~~~v~dlait~Dgk~vl~v~-------------~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~-k~~LvnL~~qei 419 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVT-------------VDKKIRLYNREARVDRGLISEEQPITSFSISKDG-KLALVNLQDQEI 419 (519)
T ss_pred cceeEEEEEcCCCcEEEEEe-------------cccceeeechhhhhhhccccccCceeEEEEcCCC-cEEEEEcccCee
Confidence 23332221111100000 12222221 234566799999999998 688888889999
Q ss_pred EEEeCCCCCCCCCCCCCCCCcEEEecCCCc--eEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCc
Q 020480 151 YVFDYSKHPSKPPLDGACSPDLRLRGHSTE--GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG 228 (325)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 228 (325)
++||+.+ ...+..+.||+.. +-.-+|.-....++++||.|+.|+||+.+.+ .++..+.+|..
T Consensus 420 ~LWDl~e----------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg------kll~~LsGHs~ 483 (519)
T KOG0293|consen 420 HLWDLEE----------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG------KLLAVLSGHSK 483 (519)
T ss_pred EEeecch----------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC------ceeEeecCCcc
Confidence 9999987 4556778888754 3344565555459999999999999999988 67899999999
Q ss_pred cEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (325)
Q Consensus 229 ~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~ 260 (325)
.|++|+|+|..+..+|+||+||+||||-....
T Consensus 484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999999999999999999999987543
No 115
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.5e-17 Score=137.34 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=130.7
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC----------------------------CCCCCCCc
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP----------------------------LDGACSPD 171 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~----------------------------~~~~~~~~ 171 (325)
....|.|.|..+++.. ..+++++.|.+|+.|.+...+.... ......|+
T Consensus 104 ~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv 180 (433)
T KOG0268|consen 104 TFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPV 180 (433)
T ss_pred eeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCcc
Confidence 4557888888888877 3577778888888887543211000 01123455
Q ss_pred EEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc
Q 020480 172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY 251 (325)
Q Consensus 172 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~ 251 (325)
..+.--.+.|.++.|+|.....|++|..|+.|.+||++.+.. ++... ..-.-+.++|+|. ...|++|+.|..
T Consensus 181 ~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi-~~mRTN~IswnPe-afnF~~a~ED~n 252 (433)
T KOG0268|consen 181 SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVI-LTMRTNTICWNPE-AFNFVAANEDHN 252 (433)
T ss_pred ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc------cceee-eeccccceecCcc-ccceeecccccc
Confidence 555555677899999999998999999999999999998843 33322 2344678999995 478889999999
Q ss_pred EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecc
Q 020480 252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSR 301 (325)
Q Consensus 252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~ 301 (325)
++.||+|.... |+....+|.+.|.+|+|+|.|+ ++||.|.+++++..+
T Consensus 253 lY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 253 LYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 99999999876 8999999999999999999998 499999999997653
No 116
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.75 E-value=1.2e-17 Score=139.90 Aligned_cols=216 Identities=14% Similarity=0.119 Sum_probs=159.5
Q ss_pred hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
....|...++|+.+...+-..+..|+.. +.++.+..... +++-|+. +-.|+.|++.
T Consensus 236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdk--Vt~ak~~~~~~----------~vVsgs~-----DRtiK~WDl~------- 291 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRLRHTLSGHTDK--VTAAKFKLSHS----------RVVSGSA-----DRTIKLWDLQ------- 291 (459)
T ss_pred eecCCCceeeeeccchhhhhhhcccccc--eeeehhhcccc----------ceeeccc-----cchhhhhhhh-------
Confidence 4446778899999999999999999888 77777777553 2333332 2345555553
Q ss_pred cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480 94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR 173 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 173 (325)
+..+.+.+-..+.++.|..++ ..+++|-.|++|++||.+. ..+...
T Consensus 292 ---------------------k~~C~kt~l~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs----------~~~~~s 337 (459)
T KOG0288|consen 292 ---------------------KAYCSKTVLPGSQCNDIVCSI---SDVISGHFDKKVRFWDIRS----------ADKTRS 337 (459)
T ss_pred ---------------------hhheeccccccccccceEecc---eeeeecccccceEEEeccC----------CceeeE
Confidence 122333444456677777764 5799999999999999887 344556
Q ss_pred EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec----CCccEEEEEeecCCCcEEEEEecC
Q 020480 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV----HEGVVEDVAWHLRHEYLFGSVGDD 249 (325)
Q Consensus 174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~s~~~d 249 (325)
...+. .|+++..++++. .+.+++.|.++.+.|+++... .+.+.+ -.+..+.+.|+|++ .++|+||.|
T Consensus 338 v~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI------~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~d 408 (459)
T KOG0288|consen 338 VPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEI------RQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSAD 408 (459)
T ss_pred eecCc-ceeeEeeccCCe-EEeeecCCCceeeeecccccE------EEEeeccccccccccceeEECCCC-ceeeeccCC
Confidence 66554 899999999998 788889999999999998643 333332 12348889999987 699999999
Q ss_pred CcEEEEEccCCCCCCCeeEeeccCC--CeeEEEeCCCCC--ccCCCCceEEeee
Q 020480 250 QYLLIWDLRTPSVSKPVQSVVAHQS--EVGVSILNASFR--LSHEDTCTCTHRH 299 (325)
Q Consensus 250 g~i~iwd~~~~~~~~~~~~~~~h~~--~v~~i~~~p~~~--~~~~~d~~~~~~~ 299 (325)
|.|+||++.+++. ...+....+ .|++++|+|.|. ++++.+..+++|.
T Consensus 409 gsv~iW~v~tgKl---E~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 409 GSVYIWSVFTGKL---EKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CcEEEEEccCceE---EEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999985 444433333 599999999887 4788888888883
No 117
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.3e-17 Score=132.49 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=125.3
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
..+.+.. .+|+.|++.| .+||+|+.||.|.+||+.+ ..+.+.+.+|..+|++++|+++|. +|+|+|.
T Consensus 19 ~tld~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T----------~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~ 85 (405)
T KOG1273|consen 19 HTLDNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDT----------FRIARMLSAHVRPITSLCWSRDGR-KLLTSSR 85 (405)
T ss_pred eeccCCc-cceEEeccCc-ceeeeeccCCcEEEEEccc----------cchhhhhhccccceeEEEecCCCC-EeeeecC
Confidence 3455555 7899999999 7999999999999999988 455677889999999999999999 9999999
Q ss_pred CCcEEEEeCCCCCCCCccc-----------------ceE----------eeec--C-----------CccEEEEEeecCC
Q 020480 200 DAQICLWDINAAPKNKSLE-----------------AMQ----------IFKV--H-----------EGVVEDVAWHLRH 239 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~-----------------~~~----------~~~~--~-----------~~~v~~v~~~p~~ 239 (325)
|..|.+||+..+...+.+. ++. .+.. | +....+..|.+.|
T Consensus 86 D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 86 DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 9999999999875321110 000 0000 0 0011122355555
Q ss_pred CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC-CCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-SEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 240 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
.++++|...|.+.++|..+.++ +..++... ..|..|.|+..|++ .-..|..+|.++++-
T Consensus 166 -~yIitGtsKGkllv~~a~t~e~---vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 166 -KYIITGTSKGKLLVYDAETLEC---VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred -CEEEEecCcceEEEEecchhee---eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 6899999999999999999885 66665444 78899999999985 566788999987763
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=1.4e-17 Score=140.74 Aligned_cols=168 Identities=20% Similarity=0.209 Sum_probs=130.2
Q ss_pred CeeEEEecCC------CCcEEEEEecCCeEEEEeCCCCCCCCC-----------CCCCCCCcEEEecCCCceEEEEecCC
Q 020480 127 EVNRARYMPQ------NPFLIATKTVSAEVYVFDYSKHPSKPP-----------LDGACSPDLRLRGHSTEGYGLSWSKF 189 (325)
Q Consensus 127 ~v~~v~~~~~------~~~~la~g~~dg~v~vwd~~~~~~~~~-----------~~~~~~~~~~~~~h~~~v~~l~~~p~ 189 (325)
.-.|+.|... .++++|.|+.+..|.|||+.-...... .....+.-..-.+|++.|.+|+|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 3345555543 147999999999999999865322211 00001111223479999999999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (325)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 269 (325)
-++.|+|||.|.+|++||+.++ .|..++..|+..|.++.|+|..+.+|++|+.|++|.+.|.|...+ ....
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~---s~~~ 325 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTG------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN---SGKE 325 (463)
T ss_pred cceeEEecCCCceEEEEEcCCC------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc---cCce
Confidence 9889999999999999999998 567788889999999999999999999999999999999996543 2222
Q ss_pred eccCCCeeEEEeCCCCCc---cCCCCceEEeeeccee
Q 020480 270 VAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 270 ~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~~ 303 (325)
-...+.|-.++|+|.... .+.+||+++..|.|..
T Consensus 326 wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~ 362 (463)
T KOG0270|consen 326 WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP 362 (463)
T ss_pred EEeccceEEEEecCCCceeEEEecCCceEEeeecCCC
Confidence 224678999999998773 7789999999998876
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.1e-18 Score=152.56 Aligned_cols=159 Identities=21% Similarity=0.265 Sum_probs=142.2
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
...|...|.++..-..+ ..+++|+.|..+.+|.... ...+..+.+|.++|-++.|++... +|++|+.+
T Consensus 24 ~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k----------p~~i~S~~~hespIeSl~f~~~E~-Llaagsas 91 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK----------PNAITSLTGHESPIESLTFDTSER-LLAAGSAS 91 (825)
T ss_pred hhhhhhhhceeeeeccc-eeeccCCCceeeccccccC----------CchhheeeccCCcceeeecCcchh-hhcccccC
Confidence 34688999999986655 7899999999999999876 455667899999999999999988 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
|+|++||+..+ ..++++.+|...+..+.|+|.+ .++|+|+.|+.+++||+|...+ .+.+.+|...|..+.
T Consensus 92 gtiK~wDleeA------k~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc---~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 92 GTIKVWDLEEA------KIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGC---SHTYKSHTRVVDVLR 161 (825)
T ss_pred Cceeeeehhhh------hhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCc---eeeecCCcceeEEEe
Confidence 99999999987 4577889999999999999998 5889999999999999998775 899999999999999
Q ss_pred eCCCCCc--cCCCCceEEeeecc
Q 020480 281 LNASFRL--SHEDTCTCTHRHSR 301 (325)
Q Consensus 281 ~~p~~~~--~~~~d~~~~~~~~~ 301 (325)
|+|+|++ ++++|.++++|+.+
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred ecCCCceeeccCCcceeeeeccc
Confidence 9999986 78889999999984
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.73 E-value=3e-17 Score=140.89 Aligned_cols=183 Identities=16% Similarity=0.123 Sum_probs=144.6
Q ss_pred EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--CCCceEEEEecCCCCCeEEE
Q 020480 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGHLLS 196 (325)
Q Consensus 119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s 196 (325)
+..+.|..-|.++.++... +.+.+|+ .|.|+|||+.... ...|+..+.. -...+.++...|+++ .|++
T Consensus 413 ~~tL~HGEvVcAvtIS~~t-rhVyTgG-kgcVKVWdis~pg-------~k~PvsqLdcl~rdnyiRSckL~pdgr-tLiv 482 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISQPG-------NKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIV 482 (705)
T ss_pred hhhhccCcEEEEEEecCCc-ceeEecC-CCeEEEeeccCCC-------CCCccccccccCcccceeeeEecCCCc-eEEe
Confidence 4566799999999999876 6888866 5799999998742 2344544443 346789999999999 7999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (325)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 276 (325)
|+.-.++.|||+..... .....+....-.+++++.+|+. .+..+|..||.|.|||+++.. .+..+++|+..+
T Consensus 483 GGeastlsiWDLAapTp----rikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~---~VrqfqGhtDGa 554 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTP----RIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQT---LVRQFQGHTDGA 554 (705)
T ss_pred ccccceeeeeeccCCCc----chhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccce---eeecccCCCCCc
Confidence 99999999999987643 1122233334567889999986 688899999999999999988 489999999999
Q ss_pred eEEEeCCCCC--ccCCCCceEEeeeccee--eeccCeeEEEeecCCC
Q 020480 277 GVSILNASFR--LSHEDTCTCTHRHSRYL--LYKFPFFVLVFPLFPS 319 (325)
Q Consensus 277 ~~i~~~p~~~--~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 319 (325)
.||..+++|. ++|+.|.++|.||+|.. ..++.+.+.+|.|...
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~c 601 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYC 601 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccC
Confidence 9999999987 49999999999999875 3566677777777643
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.73 E-value=7.7e-17 Score=143.14 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=131.1
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
..+|+..|.++..-|.+ .+++|+.|.+|++|.-. ..+.++.+|++-|.++++-+++. |+||+.|
T Consensus 136 l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~------------~~l~tf~gHtD~VRgL~vl~~~~--flScsND 199 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG------------TLLKTFSGHTDCVRGLAVLDDSH--FLSCSND 199 (745)
T ss_pred cCCcchheeeeeecCCC--cEEeccCcceeeeccCC------------chhhhhccchhheeeeEEecCCC--eEeecCC
Confidence 56899999999999986 79999999999999864 34678999999999999998764 9999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
|.|++|++.. .++..+.+|++-|++++..+++ ..+++++.|++++||+.. . ..+.+.-....|+++.
T Consensus 200 g~Ir~w~~~g-------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~--e---~~q~I~lPttsiWsa~ 266 (745)
T KOG0301|consen 200 GSIRLWDLDG-------EVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD--E---CVQVITLPTTSIWSAK 266 (745)
T ss_pred ceEEEEeccC-------ceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC--c---eEEEEecCccceEEEE
Confidence 9999999954 4688899999999999966654 589999999999999987 3 3666654455899999
Q ss_pred eCCCCCc-cCCCCceEEeeecc
Q 020480 281 LNASFRL-SHEDTCTCTHRHSR 301 (325)
Q Consensus 281 ~~p~~~~-~~~~d~~~~~~~~~ 301 (325)
+-++|.+ .|+.||.+++|...
T Consensus 267 ~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 267 VLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EeeCCCEEEeccCceEEEEEec
Confidence 9999987 89999999998654
No 122
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=2.8e-16 Score=134.80 Aligned_cols=206 Identities=19% Similarity=0.259 Sum_probs=154.3
Q ss_pred hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA 96 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 96 (325)
-++.+|||+.....+-..+..|+.. ++-|++.-..+ .++.++..+ .|.|..+.
T Consensus 99 ~~~~Vkiwdl~~kl~hr~lkdh~st--vt~v~YN~~De----------yiAsvs~gG-----diiih~~~---------- 151 (673)
T KOG4378|consen 99 QSGCVKIWDLRAKLIHRFLKDHQST--VTYVDYNNTDE----------YIASVSDGG-----DIIIHGTK---------- 151 (673)
T ss_pred cCceeeehhhHHHHHhhhccCCcce--eEEEEecCCcc----------eeEEeccCC-----cEEEEecc----------
Confidence 4578999999988888888888855 66666665443 333333222 34444332
Q ss_pred CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE-Ee
Q 020480 97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-LR 175 (325)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~ 175 (325)
.+.-.....++....|.-+.|+|....+|.+++.+|.|.+||+.. ..|++. ..
T Consensus 152 ----------------t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g----------~sp~~~~~~ 205 (673)
T KOG4378|consen 152 ----------------TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG----------MSPIFHASE 205 (673)
T ss_pred ----------------cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC----------CCcccchhh
Confidence 000000012233455668899998878899999999999999987 444543 45
Q ss_pred cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (325)
Q Consensus 176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw 255 (325)
.|..+...++|+|.+.-+|++.+.|..|.+||++..... ..+ ....+...++|.++| .+|+.|...|.|..|
T Consensus 206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~------~~l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~Y 277 (673)
T KOG4378|consen 206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST------DRL-TYSHPLSTVAFSECG-TYLCAGNSKGELIAY 277 (673)
T ss_pred hccCCcCcceecCCccceEEEecccceEEEeeccccccc------cee-eecCCcceeeecCCc-eEEEeecCCceEEEE
Confidence 899999999999999889999999999999999965332 111 234568899999998 799999999999999
Q ss_pred EccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480 256 DLRTPSVSKPVQSVVAHQSEVGVSILNASF 285 (325)
Q Consensus 256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~ 285 (325)
|+|..+. |+..+.+|...|++|+|-|..
T Consensus 278 D~R~~k~--Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 278 DMRSTKA--PVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ecccCCC--CceEeeecccceeEEEeeecc
Confidence 9999886 899999999999999997763
No 123
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=8.8e-17 Score=136.55 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=135.3
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
.|...+.+++.+++| ++||+|+.|..|.||+..+ .+++..+.+|.+.|.+++|-.... .+++++.|++
T Consensus 200 ~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t----------~ehv~~~~ghr~~V~~L~fr~gt~-~lys~s~Drs 267 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT----------LEHVKVFKGHRGAVSSLAFRKGTS-ELYSASADRS 267 (479)
T ss_pred cccceeEEEEEcCCC-cEEEecCCCceEEEecCcc----------cchhhcccccccceeeeeeecCcc-ceeeeecCCc
Confidence 899999999999999 8999999999999999988 677888999999999999987655 7999999999
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~ 282 (325)
|++|++... ..+.++.+|...|.++.-.... ..+-+|+.|+++++|++.... -..+.+|.+.+-|++|-
T Consensus 268 vkvw~~~~~------s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees----qlifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 268 VKVWSIDQL------SYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES----QLIFRGGEGSIDCVAFI 336 (479)
T ss_pred eEEEehhHh------HHHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc----eeeeeCCCCCeeeEEEe
Confidence 999999876 4577889999999999876554 677677799999999995443 45567888899999998
Q ss_pred CCCCc-cCCCCceEEeeecc
Q 020480 283 ASFRL-SHEDTCTCTHRHSR 301 (325)
Q Consensus 283 p~~~~-~~~~d~~~~~~~~~ 301 (325)
.+..+ +|+++|.+.+|.+.
T Consensus 337 n~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 337 NDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred cccceeeccCCceEEEeeec
Confidence 77765 99999999999863
No 124
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=4.7e-16 Score=125.07 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=128.7
Q ss_pred ccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 123 NHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 123 ~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
+|....++-+|+|. +.+.+++ ..|+++..||+++. .+....-..|...|.++.|+|+....|+||+.||
T Consensus 168 e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~---------~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg 237 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTM---------KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDG 237 (370)
T ss_pred cccceecccccCCCCccceEEE-eCCCcEEEEEccch---------hhhcchhhhhcceeeeccCCCCceEEEEEcCCCc
Confidence 35666778899993 3366776 56889999999972 1112223478889999999999998999999999
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-------------------
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV------------------- 262 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~------------------- 262 (325)
.|++||.|..+ .++..+.+|...|+++.|+|....++++||.|..|.+|...+-..
T Consensus 238 yvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse 312 (370)
T KOG1007|consen 238 YVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE 312 (370)
T ss_pred cEEEEeccCCC-----ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence 99999999875 478889999999999999998888999999999999998754220
Q ss_pred --CC-----CeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeec
Q 020480 263 --SK-----PVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHS 300 (325)
Q Consensus 263 --~~-----~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~ 300 (325)
.+ .+.++..|...|.+++|+.-... +-++||.+.+-.+
T Consensus 313 er~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 313 ERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred HhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 01 24466789999999999976663 6678887776544
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.5e-15 Score=123.26 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=121.6
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
+...+.|..++.+++|.+.. .+++|+.||.|+.+|+.. .....+..|..++.++..++... .+++|
T Consensus 47 l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~-----------~~~~~igth~~~i~ci~~~~~~~-~vIsg 112 (323)
T KOG1036|consen 47 LKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNT-----------GNEDQIGTHDEGIRCIEYSYEVG-CVISG 112 (323)
T ss_pred hhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecC-----------CcceeeccCCCceEEEEeeccCC-eEEEc
Confidence 33467899999999999854 799999999999999987 33556778999999999998766 89999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC--------------
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------- 263 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-------------- 263 (325)
+.|++|++||.+... ....+. ....|.++... + +.|+.|+.|..+.+||+|+....
T Consensus 113 sWD~~ik~wD~R~~~------~~~~~d-~~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~ 182 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKV------VVGTFD-QGKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC 182 (323)
T ss_pred ccCccEEEEeccccc------cccccc-cCceEEEEecc--C-CEEEEeecCceEEEEEcccccchhhhccccceeEEEE
Confidence 999999999999632 222222 23478877765 3 57888889999999999874321
Q ss_pred -------------------------------CCeeEeeccC---------CCeeEEEeCCC-CCc-cCCCCceEEeeecc
Q 020480 264 -------------------------------KPVQSVVAHQ---------SEVGVSILNAS-FRL-SHEDTCTCTHRHSR 301 (325)
Q Consensus 264 -------------------------------~~~~~~~~h~---------~~v~~i~~~p~-~~~-~~~~d~~~~~~~~~ 301 (325)
..-..++.|. -||++|+|+|- +.+ +||.||.+.+|+..
T Consensus 183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred EEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 0011122232 27999999995 444 99999999999874
Q ss_pred e
Q 020480 302 Y 302 (325)
Q Consensus 302 ~ 302 (325)
.
T Consensus 263 ~ 263 (323)
T KOG1036|consen 263 N 263 (323)
T ss_pred c
Confidence 4
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.4e-15 Score=120.51 Aligned_cols=188 Identities=14% Similarity=0.165 Sum_probs=135.1
Q ss_pred CceEEE-EEeccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCC
Q 020480 114 GKVQII-QQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE 191 (325)
Q Consensus 114 ~~~~~~-~~~~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 191 (325)
+...+. ....|.+.|..+.|.+. =++.+|+++.|+++.||.-..... .....++....++....+.|+++.|.|...
T Consensus 47 ~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~-~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl 125 (361)
T KOG2445|consen 47 GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE-EAHGRRWVRRTTLVDSRSSVTDVKFAPKHL 125 (361)
T ss_pred CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc-ccccceeEEEEEeecCCcceeEEEecchhc
Confidence 344443 34569999999999864 237999999999999998632111 111123455667778889999999999643
Q ss_pred C-eEEEEeCCCcEEEEeCCCCCCC--------------------------------------------------------
Q 020480 192 G-HLLSGSDDAQICLWDINAAPKN-------------------------------------------------------- 214 (325)
Q Consensus 192 ~-~l~s~s~dg~i~iwd~~~~~~~-------------------------------------------------------- 214 (325)
+ .+++++.||.+|||+.-.....
T Consensus 126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 3 6899999999999975432100
Q ss_pred -----CcccceEeeecCCccEEEEEeecCC---CcEEEEEecCCcEEEEEccCCC-----------------CCCCeeEe
Q 020480 215 -----KSLEAMQIFKVHEGVVEDVAWHLRH---EYLFGSVGDDQYLLIWDLRTPS-----------------VSKPVQSV 269 (325)
Q Consensus 215 -----~~~~~~~~~~~~~~~v~~v~~~p~~---~~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~ 269 (325)
.....+..+.+|+..|++++|.|+- ..+||+++.|| |+||.++... ..+.+..+
T Consensus 206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL 284 (361)
T ss_pred ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence 0001122345688999999999963 36899999999 9999998421 01234456
Q ss_pred eccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480 270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
..|.++|+.+.|+-.|.+ +.|+||.+|+|...+.
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 789999999999999986 8899999999986543
No 127
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=1.2e-16 Score=140.90 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=123.2
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
....|+.+.|.|-+...||+++.||.|++|.+....... ....|...+.+|...|+++.|+|--.+.|++++.|-+|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e---~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti 702 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE---NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTI 702 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc---ccCCcceeeecccceEEEEEecchhhhHhhhhhcccee
Confidence 556899999999888999999999999999987632221 23566778899999999999999988899999999999
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-CCCeeEEEeC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QSEVGVSILN 282 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~i~~~ 282 (325)
++||++.+. ....+.+|...|..++|+|+| +.+|+.+.||+|++|..|+... +++.-.+- ...--.|.|.
T Consensus 703 ~lWDl~~~~------~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wa 773 (1012)
T KOG1445|consen 703 ELWDLANAK------LYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWA 773 (1012)
T ss_pred eeeehhhhh------hhheeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEE
Confidence 999999874 355678999999999999998 7999999999999999998875 55543221 1222345666
Q ss_pred CCCCc
Q 020480 283 ASFRL 287 (325)
Q Consensus 283 p~~~~ 287 (325)
-+|++
T Consensus 774 cdgr~ 778 (1012)
T KOG1445|consen 774 CDGRI 778 (1012)
T ss_pred ecCcE
Confidence 66663
No 128
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.1e-15 Score=121.78 Aligned_cols=222 Identities=10% Similarity=0.093 Sum_probs=153.9
Q ss_pred hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA 96 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 96 (325)
.+..+++++...+.....+...+-+ +-.+.|..... .++.++ ..+++.|..+++.
T Consensus 34 ~dDsl~LYd~~~g~~~~ti~skkyG--~~~~~Fth~~~----------~~i~sS---tk~d~tIryLsl~---------- 88 (311)
T KOG1446|consen 34 EDDSLRLYDSLSGKQVKTINSKKYG--VDLACFTHHSN----------TVIHSS---TKEDDTIRYLSLH---------- 88 (311)
T ss_pred CCCeEEEEEcCCCceeeEeeccccc--ccEEEEecCCc----------eEEEcc---CCCCCceEEEEee----------
Confidence 4455666666665555555555544 33334433322 233333 2455667666664
Q ss_pred CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480 97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG 176 (325)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 176 (325)
+.+. +...-+|...|+.++.+|-+ ..+++++.|++|++||++. ..+ ...+.
T Consensus 89 ----------------dNky-lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~--------~~c--qg~l~- 139 (311)
T KOG1446|consen 89 ----------------DNKY-LRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRV--------KKC--QGLLN- 139 (311)
T ss_pred ----------------cCce-EEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecC--------CCC--ceEEe-
Confidence 2222 22345799999999999988 7999999999999999996 222 22222
Q ss_pred CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeee---cCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK---VHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (325)
Q Consensus 177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~s~~~dg~i~ 253 (325)
...-...+|.|.|- ++|++...+.|++||+|.-.+. |..++. +.....+.+.|+|+|. .++.+...+.++
T Consensus 140 -~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkg----PF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 140 -LSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKG----PFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIY 212 (311)
T ss_pred -cCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCC----CceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEE
Confidence 22234678999998 8888888889999999987653 444443 3367889999999985 666778889999
Q ss_pred EEEccCCCCCCCeeEeeccCCCe---eEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 254 IWDLRTPSVSKPVQSVVAHQSEV---GVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 254 iwd~~~~~~~~~~~~~~~h~~~v---~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
+.|.-.+.. ..++..+...- -+..|.|++++ ++++|+++.+|++..
T Consensus 213 ~lDAf~G~~---~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 213 LLDAFDGTV---KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEEccCCcE---eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 999999884 66665554332 56789999995 889999999998743
No 129
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3e-15 Score=121.87 Aligned_cols=157 Identities=13% Similarity=0.157 Sum_probs=127.3
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC--CC
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD--DA 201 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~--dg 201 (325)
..+.|+++.|+++| ..+++++.|-.+++||... ...+.++..+.-.+..++|-.... .++.++. |.
T Consensus 13 ~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~----------g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~ 80 (311)
T KOG1446|consen 13 TNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLS----------GKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDD 80 (311)
T ss_pred CCCceeEEEecCCC-CEEEEecCCCeEEEEEcCC----------CceeeEeecccccccEEEEecCCc-eEEEccCCCCC
Confidence 57899999999999 5777788999999999987 455677777777888888876666 4666665 88
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL 281 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~ 281 (325)
+|+.-++... +.++.|.+|...|++++.+|-+ ..+++++.|++||+||+|..++ ...+.. ..-..++|
T Consensus 81 tIryLsl~dN------kylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c---qg~l~~--~~~pi~Af 148 (311)
T KOG1446|consen 81 TIRYLSLHDN------KYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC---QGLLNL--SGRPIAAF 148 (311)
T ss_pred ceEEEEeecC------ceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC---ceEEec--CCCcceeE
Confidence 9999999887 6799999999999999999987 6888999999999999998875 333322 23344799
Q ss_pred CCCCCc--cCCCCceEEeeecceee
Q 020480 282 NASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 282 ~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
+|.|.+ ++.....++++|+|.+.
T Consensus 149 Dp~GLifA~~~~~~~IkLyD~Rs~d 173 (311)
T KOG1446|consen 149 DPEGLIFALANGSELIKLYDLRSFD 173 (311)
T ss_pred CCCCcEEEEecCCCeEEEEEecccC
Confidence 999996 44445589999999874
No 130
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.6e-16 Score=148.45 Aligned_cols=230 Identities=16% Similarity=0.207 Sum_probs=173.1
Q ss_pred hhHHHHhhhHhcC------hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCC
Q 020480 16 LINEEYKIWKKNT------PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL 89 (325)
Q Consensus 16 ~~~~~~~iw~~~~------~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 89 (325)
..|..|-+|+... ..+.-.+..|+ -+++.++|.|.... .+ ++++.+..|.||+++-+.
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~--G~V~gLDfN~~q~n---------lL-----ASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHT--GPVLGLDFNPFQGN---------LL-----ASGADDGEILIWDLNKPE 150 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccC--CceeeeeccccCCc---------ee-----eccCCCCcEEEeccCCcC
Confidence 3444455554433 22333444444 35999999997641 12 445556689999997441
Q ss_pred CCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCC
Q 020480 90 DDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS 169 (325)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~ 169 (325)
.. +..- .....+.|.+++|+..-.++||+++.+|.+.|||++. .+
T Consensus 151 tP------------------------~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~----------~~ 195 (1049)
T KOG0307|consen 151 TP------------------------FTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK----------KK 195 (1049)
T ss_pred CC------------------------CCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccC----------CC
Confidence 10 1100 2345678999999998889999999999999999997 35
Q ss_pred CcEEEecCCC--ceEEEEecCCCCCeEEEEeCCC---cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEE
Q 020480 170 PDLRLRGHST--EGYGLSWSKFKEGHLLSGSDDA---QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG 244 (325)
Q Consensus 170 ~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 244 (325)
++..+..|.. .+..+.|+|++...+++++.|. .|.+||+|... .+++.+++|..+|.++.|++.+..+++
T Consensus 196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-----sP~k~~~~H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-----SPLKILEGHQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-----CchhhhcccccceeeeccCCCCchhhh
Confidence 5655654443 4789999999988899988764 59999999764 478888999999999999999889999
Q ss_pred EEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--c-cCCCCceEEeeecceee
Q 020480 245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--L-SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 245 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~-~~~~d~~~~~~~~~~~~ 304 (325)
|++.|+.|.+|+..+++. +..+.....++..+.|+|... + .++.++.+.++.+....
T Consensus 271 SsgkD~~ii~wN~~tgEv---l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 271 SSGKDNRIICWNPNTGEV---LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cccCCCCeeEecCCCceE---eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999999999985 778877788999999999655 3 67788888887654443
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.6e-15 Score=121.00 Aligned_cols=131 Identities=15% Similarity=0.227 Sum_probs=101.9
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecC-CCCCeEEEEeCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK-FKEGHLLSGSDD 200 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~d 200 (325)
-+|..-|+++.|.+.| +.+|+|+.|++|+|||.+.. .+........+.|.+.|..+.|.+ .-...+++++.|
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSD------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCC------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence 4688999999999999 79999999999999997551 234555566789999999999954 333389999999
Q ss_pred CcEEEEeCCCCCC---CCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCcEEEEEccC
Q 020480 201 AQICLWDINAAPK---NKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 201 g~i~iwd~~~~~~---~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~ 259 (325)
+++.||.-..... ........++....+.|++++|.|.. .-.+|+++.||.+|||+...
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 9999997532211 11223455677788899999999953 25789999999999998754
No 132
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.1e-15 Score=122.35 Aligned_cols=174 Identities=13% Similarity=0.144 Sum_probs=136.7
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
-...|..+.|+|.+ ..|++++.||.+++|+.... . +...-.|..++.+++|.+.. .+++|+.||.|
T Consensus 12 P~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~----------~-l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~v 77 (323)
T KOG1036|consen 12 PEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPAN----------S-LKLKFKHGAPLLDCAFADES--TIVTGGLDGQV 77 (323)
T ss_pred ChhceeeEEEcCcC-CcEEEEeccCcEEEEeccch----------h-hhhheecCCceeeeeccCCc--eEEEeccCceE
Confidence 35689999999887 45666689999999999872 1 22223588999999999854 59999999999
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA 283 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p 283 (325)
+++|+.++. ...+..|...|.++.+++.. ..+++||.|++|++||.|.... ...+. ....|.++....
T Consensus 78 r~~Dln~~~-------~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~---~~~~d-~~kkVy~~~v~g 145 (323)
T KOG1036|consen 78 RRYDLNTGN-------EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVV---VGTFD-QGKKVYCMDVSG 145 (323)
T ss_pred EEEEecCCc-------ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccc---ccccc-cCceEEEEeccC
Confidence 999999874 34567799999999999864 6899999999999999997442 44443 244899999998
Q ss_pred CCCccCCCCceEEeeecceeeec-------cCeeEEEeecCCCcccc
Q 020480 284 SFRLSHEDTCTCTHRHSRYLLYK-------FPFFVLVFPLFPSLQHY 323 (325)
Q Consensus 284 ~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 323 (325)
+..+.|..+..+.+||+|..... +..+..+..++|..+.|
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy 192 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGY 192 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCce
Confidence 88888889999999999887543 34556666677766554
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.68 E-value=1.1e-16 Score=137.54 Aligned_cols=152 Identities=12% Similarity=0.087 Sum_probs=128.1
Q ss_pred CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i 205 (325)
-.+.+++.+|+. ++.++++.||.|.|||+.. ...++.|+||++.+.+|..+++|. .|-||+.|++||-
T Consensus 510 paCyALa~spDa-kvcFsccsdGnI~vwDLhn----------q~~VrqfqGhtDGascIdis~dGt-klWTGGlDntvRc 577 (705)
T KOG0639|consen 510 PACYALAISPDA-KVCFSCCSDGNIAVWDLHN----------QTLVRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRC 577 (705)
T ss_pred hhhhhhhcCCcc-ceeeeeccCCcEEEEEccc----------ceeeecccCCCCCceeEEecCCCc-eeecCCCccceee
Confidence 467789999988 7888889999999999998 466889999999999999999999 7999999999999
Q ss_pred EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF 285 (325)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~ 285 (325)
||++.+... .. ....+.|.++.++|++ ..++.|-..+.+.|-...... -+.+.-|.+-|.++.|.+.|
T Consensus 578 WDlregrql------qq-hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~----kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 578 WDLREGRQL------QQ-HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE----KYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred hhhhhhhhh------hh-hhhhhhheecccCCCc-cceeeecccCcEEEEecCCcc----ceeecccccEEEEEEecccC
Confidence 999987542 11 1235689999999997 588899999999888877665 35667799999999999999
Q ss_pred Cc--cCCCCceEEeeecc
Q 020480 286 RL--SHEDTCTCTHRHSR 301 (325)
Q Consensus 286 ~~--~~~~d~~~~~~~~~ 301 (325)
++ +.+.|.....|...
T Consensus 646 kwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred ceeeecCchhhhhhccCc
Confidence 96 77888888887643
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.68 E-value=7.1e-16 Score=131.03 Aligned_cols=172 Identities=16% Similarity=0.132 Sum_probs=136.8
Q ss_pred ccCCCeeEEEecCCCC-cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 123 NHDGEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~-~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
-+.+.|++++|+|... +++|+|...|+|-+||+..+. .....+..+..|..+|.++.|+|.+...+++.|.||
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~------~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE------KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC------CccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 4889999999999876 799999999999999996321 112335567889999999999999998999999999
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL 281 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~ 281 (325)
+|++-|+..... ..+.........+..+.|+...+ .++.+..=|...+||+|+... ....+.-|...|++|++
T Consensus 258 tiR~~D~~~~i~----e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s--~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 258 TIRLQDFEGNIS----EEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGS--EYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeeeeecchhh----HHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCc--cchhhhhhhcccceeec
Confidence 999999987643 22223333445677788887764 455666667999999999875 35556678889999999
Q ss_pred CCCCC---ccCCCCceEEeeecceeeecc
Q 020480 282 NASFR---LSHEDTCTCTHRHSRYLLYKF 307 (325)
Q Consensus 282 ~p~~~---~~~~~d~~~~~~~~~~~~~~~ 307 (325)
+|... +++|.|.+.++||+|.+.-+-
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCC
Confidence 99766 399999999999999887655
No 135
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=124.68 Aligned_cols=215 Identities=18% Similarity=0.273 Sum_probs=159.2
Q ss_pred hhHHHHhhhHhcCh------hHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCC
Q 020480 16 LINEEYKIWKKNTP------FLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL 89 (325)
Q Consensus 16 ~~~~~~~iw~~~~~------~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 89 (325)
..++-|++|+--++ ..|+.+.... ...+++|+|+++ .+++|- .+.|.+.+...|.
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~t---aAhsL~Fs~DGe----------qlfaGy------krcirvFdt~RpG 190 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYT---AAHSLQFSPDGE----------QLFAGY------KRCIRVFDTSRPG 190 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhh---hheeEEecCCCC----------eEeecc------cceEEEeeccCCC
Confidence 35677899987664 3566665554 357999999986 444443 2578888887663
Q ss_pred CCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCC
Q 020480 90 DDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS 169 (325)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~ 169 (325)
.+... -........+..+.|.+++|+|.....+|.|+....+-||.-.. ..
T Consensus 191 r~c~v-------------------y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~----------~~ 241 (406)
T KOG2919|consen 191 RDCPV-------------------YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG----------RR 241 (406)
T ss_pred CCCcc-------------------hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC----------CC
Confidence 22110 00011113456789999999999888999999999999998776 67
Q ss_pred CcEEEecCCCceEEEEecCCCCCeEEEEeC-CCcEEEEeCCCCCCCCcccceEeeecCCc-cEEEE--EeecCCCcEEEE
Q 020480 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-DAQICLWDINAAPKNKSLEAMQIFKVHEG-VVEDV--AWHLRHEYLFGS 245 (325)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~v--~~~p~~~~~l~s 245 (325)
|+..+-+|.+.|+.++|.++|+ .|++|.. |-.|..||+|... .++..+..|.. .-..| ...|.+ ++||+
T Consensus 242 pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~-----~pv~~L~rhv~~TNQRI~FDld~~~-~~Las 314 (406)
T KOG2919|consen 242 PLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSR-----DPVYALERHVGDTNQRILFDLDPKG-EILAS 314 (406)
T ss_pred ceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhcc-----chhhhhhhhccCccceEEEecCCCC-ceeec
Confidence 7888889999999999999999 6777764 6789999999764 34555666654 22233 446776 79999
Q ss_pred EecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480 246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 246 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 287 (325)
|+.||.|++||+..... ++..+..|...++.++++|--.+
T Consensus 315 G~tdG~V~vwdlk~~gn--~~sv~~~~sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 315 GDTDGSVRVWDLKDLGN--EVSVTGNYSDTVNGVSLNPIMPI 354 (406)
T ss_pred cCCCccEEEEecCCCCC--cccccccccccccceecCcccce
Confidence 99999999999998443 57778889999999999997555
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.67 E-value=9.7e-16 Score=135.08 Aligned_cols=255 Identities=13% Similarity=0.096 Sum_probs=165.5
Q ss_pred hhHHHHhhhHhcChhHHHH--hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 16 LINEEYKIWKKNTPFLYDL--VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 16 ~~~~~~~iw~~~~~~~y~~--~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
.=|.++|.|+++...+-.. +..|+.. +-+++|.|..... ++. ++.+++|+||++.....+..
T Consensus 119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~S--vkS~cf~~~n~~v---------F~t-----GgRDg~illWD~R~n~~d~~ 182 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGGRLNLGHTGS--VKSECFMPTNPAV---------FCT-----GGRDGEILLWDCRCNGVDAL 182 (720)
T ss_pred cCCceeeeeeeccceeecceeecccccc--cchhhhccCCCcc---------eee-----ccCCCcEEEEEEeccchhhH
Confidence 3578999999999888877 7777766 6688899987632 433 34556899999975432221
Q ss_pred cccCCCCcccCCCCCCCCC-CC----ceEEEEEeccCCCeeE---EEecCCCCcEEEEEec-CCeEEEEeCCCCCCCCCC
Q 020480 94 NDARHYDDDRSDFGGFGCA-NG----KVQIIQQINHDGEVNR---ARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPL 164 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~h~~~v~~---v~~~~~~~~~la~g~~-dg~v~vwd~~~~~~~~~~ 164 (325)
+... ...+...... .+ +-..-+...+...|.. +.+..+. ..||+++. |+.|+|||++.+-..-+
T Consensus 183 e~~~-----~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r- 255 (720)
T KOG0321|consen 183 EEFD-----NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYR- 255 (720)
T ss_pred HHHh-----hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccc-
Confidence 1110 0111111110 11 1111122335555555 4555555 57888777 99999999987433221
Q ss_pred CCCCCCcEEEecC---CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCcc--EEEEEeecCC
Q 020480 165 DGACSPDLRLRGH---STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLRH 239 (325)
Q Consensus 165 ~~~~~~~~~~~~h---~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~~ 239 (325)
+.......+..| .-.+.++.....|..++|+|. |++|+.|++..... .++..+.++... -..-..+|++
T Consensus 256 -~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 256 -QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred -cCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCc----CchhhccCcccceeeeeeecCCCC
Confidence 111112222233 335677888888885556555 99999999987654 445555554322 1223467887
Q ss_pred CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC--C-ccCCCCceEEeeecce
Q 020480 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF--R-LSHEDTCTCTHRHSRY 302 (325)
Q Consensus 240 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~--~-~~~~~d~~~~~~~~~~ 302 (325)
.++++|+.|...++|.+.+... +...+.+|...|++++|.|.. . +++++|.++++|++..
T Consensus 330 -~~l~SgSsd~~ayiw~vs~~e~--~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 330 -CSLLSGSSDEQAYIWVVSSPEA--PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred -ceEeccCCCcceeeeeecCccC--ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 5889999999999999998876 778888999999999998853 3 4889999999998733
No 137
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.67 E-value=8.9e-17 Score=126.74 Aligned_cols=178 Identities=21% Similarity=0.235 Sum_probs=147.5
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
...+|.++|.....+.+. ..-|+++.|-+-++||.-+ ...+.++ .|..-|..++|+.+.. .|++|+.
T Consensus 54 tfeghkgavw~~~l~~na-~~aasaaadftakvw~a~t----------gdelhsf-~hkhivk~~af~~ds~-~lltgg~ 120 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVT----------GDELHSF-EHKHIVKAVAFSQDSN-YLLTGGQ 120 (334)
T ss_pred eeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhh----------hhhhhhh-hhhheeeeEEecccch-hhhccch
Confidence 356899999999999876 6888999999999999876 2234445 4778899999999988 7999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
+..+||||++... .+...+.+|.+.|..+-|.... +.|++++.|++||+||.|++.. ++++. ...+|+++
T Consensus 121 ekllrvfdln~p~-----App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~---v~sL~-~~s~VtSl 190 (334)
T KOG0278|consen 121 EKLLRVFDLNRPK-----APPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTE---VQSLE-FNSPVTSL 190 (334)
T ss_pred HHHhhhhhccCCC-----CCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcE---EEEEe-cCCCCcce
Confidence 9999999998765 3566789999999999999865 5777889999999999999985 77775 46789999
Q ss_pred EeCCCCCc-cCCCCceEEeeeccee----eeccCeeEEEeecCCCc
Q 020480 280 ILNASFRL-SHEDTCTCTHRHSRYL----LYKFPFFVLVFPLFPSL 320 (325)
Q Consensus 280 ~~~p~~~~-~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 320 (325)
.++++|++ +.++-+++++|+...+ .++.|...-...|-|..
T Consensus 191 Evs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 191 EVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK 236 (334)
T ss_pred eeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence 99999996 6677889999987665 36677666666666655
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=6e-15 Score=135.08 Aligned_cols=164 Identities=13% Similarity=0.127 Sum_probs=130.7
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
..-++.+++|+.+| +++|.|+.|-.|++-+... ......+.+|.++|.+|.++|.+. +||+.+.||.|
T Consensus 95 ftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D----------~s~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v 162 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDD----------SSQEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKV 162 (933)
T ss_pred eeccceEEEEecCC-cEEEeecCceeEEEEeccc----------cchheeecccCCceeeeeEcCCCC-EEEEEecCceE
Confidence 45678999999988 7999999999999999877 344678999999999999999999 99999999999
Q ss_pred EEEeCCCCCCCCcccceEeeec--CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--eccCCCeeEE
Q 020480 204 CLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVGVS 279 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~i 279 (325)
++||+..+.....+.-+..-.. ....+..++|+|++ ..|+..+.|+.|++|+...... ...+ ..+.+.+..+
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~---~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWEL---QFKLRDKLSSSKFSDL 238 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCcee---heeecccccccceEEE
Confidence 9999998754333222211111 13456779999997 4677888999999999988774 3333 3344559999
Q ss_pred EeCCCCCc--cCCCCceEEeeeccee
Q 020480 280 ILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 280 ~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
+|+|+|++ +++.++.+.+|++...
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEecccc
Confidence 99999996 7788999999998753
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.66 E-value=2.6e-15 Score=122.77 Aligned_cols=179 Identities=18% Similarity=0.234 Sum_probs=139.4
Q ss_pred eccCCCeeEEEecC----CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCceEEEEecCC---CCC
Q 020480 122 INHDGEVNRARYMP----QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKF---KEG 192 (325)
Q Consensus 122 ~~h~~~v~~v~~~~----~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~---~~~ 192 (325)
..|+.+|..++|++ +.+..+|+.+.+ .+.+|..... +....+.... .|......++|+-+ +.-
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d-------~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p 106 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGD-------GGIRLLQSYADEDHDESFYTCSWSYDSNTGNP 106 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCc-------cceeeeeeccCCCCCcceEEEEEEecCCCCCe
Confidence 35889999999995 234577776654 8999988762 1112222221 36667778888654 233
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe---
Q 020480 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--- 269 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--- 269 (325)
++|.|+.-|.|+|.|+.++ .+...+.+|...|+.+.++|..++++++|+.|.+||+|++++..+ +..+
T Consensus 107 ~la~~G~~GvIrVid~~~~------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C---v~VfGG~ 177 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSG------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC---VAVFGGV 177 (385)
T ss_pred eEEeecceeEEEEEecchh------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE---EEEeccc
Confidence 8899999999999999987 456778999999999999999999999999999999999999987 5554
Q ss_pred eccCCCeeEEEeCCCCCc--cCCCCceEEeeecce--ee---------------eccCeeEEEeecC
Q 020480 270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY--LL---------------YKFPFFVLVFPLF 317 (325)
Q Consensus 270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~--~~---------------~~~~~~~~~~~~~ 317 (325)
.+|...|.++.|+++|.. ++|.|.++++|.+.. +. -.||.....||.|
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 789999999999999884 999999999998872 11 1367777777776
No 140
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=9.3e-16 Score=128.18 Aligned_cols=126 Identities=21% Similarity=0.332 Sum_probs=110.8
Q ss_pred EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC-cccceEeeecCCccEEEEEeecCCCcEEEEEecCCc
Q 020480 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK-SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY 251 (325)
Q Consensus 173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~ 251 (325)
.+.||+++|..++|+|.+.+.+||||.|.+|.||++-...... ...++..+.+|...|--++|||...++|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999999899999999999999987654332 224677889999999999999998899999999999
Q ss_pred EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
|.+||+.+++. +.++. |...|.++.|+.+|.+ +.+.|..+++|+-|.
T Consensus 156 v~iWnv~tgea---li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 156 VSIWNVGTGEA---LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred EEEEeccCCce---eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence 99999999985 66666 9999999999999986 788999999998654
No 141
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.66 E-value=3.1e-16 Score=131.64 Aligned_cols=168 Identities=18% Similarity=0.167 Sum_probs=136.8
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
+-.+.|+++.|.+++ +.+++++.|+.+++|++.. .....++.+|++.|+++.|..... .+++|+.|.+
T Consensus 217 Gs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~----------~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRt 284 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDS----------LRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRT 284 (459)
T ss_pred ccCCCcceeeecCCC-ceEEeecCCCceeeeeccc----------hhhhhhhcccccceeeehhhcccc-ceeeccccch
Confidence 466889999999999 5677779999999999987 455778999999999999998877 5999999999
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~ 282 (325)
|++||+... .|..++. ..+.+.+|+.++ ..+++|-.|+.||+||.|+... ..+...+. .|+++..+
T Consensus 285 iK~WDl~k~------~C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~---~~sv~~gg-~vtSl~ls 350 (459)
T KOG0288|consen 285 IKLWDLQKA------YCSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADK---TRSVPLGG-RVTSLDLS 350 (459)
T ss_pred hhhhhhhhh------heecccc-ccccccceEecc---eeeeecccccceEEEeccCCce---eeEeecCc-ceeeEeec
Confidence 999999875 3343333 234567777662 5688999999999999999884 77776654 89999999
Q ss_pred CCCC--ccCCCCceEEeeecceeeeccCeeEEEeec
Q 020480 283 ASFR--LSHEDTCTCTHRHSRYLLYKFPFFVLVFPL 316 (325)
Q Consensus 283 p~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 316 (325)
++|. ++++.|.++.+.+++......++.+.+|-.
T Consensus 351 ~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 351 MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred cCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 9987 478899999999999887777766665543
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.65 E-value=2.2e-15 Score=129.43 Aligned_cols=239 Identities=14% Similarity=0.164 Sum_probs=170.0
Q ss_pred HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR 97 (325)
Q Consensus 18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 97 (325)
..++|+|+...-..-..+..++.+--.-+|.|.... .+++.+.+. +..+.++.-.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n-----------~lvvas~~g---dk~~~~~~K~----------- 65 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN-----------FLVVASMAG---DKVMRIKEKD----------- 65 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccc-----------eEEEeecCC---ceeEEEeccc-----------
Confidence 356788888776666666666665556788888754 244444322 2233333221
Q ss_pred CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480 98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH 177 (325)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h 177 (325)
. ..|.+..+....-. .-.|++..... .++++|+..+.|+|||++. ....+.+.+|
T Consensus 66 ---g----------~~~~Vp~~~k~~gd-~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~----------kl~hr~lkdh 120 (673)
T KOG4378|consen 66 ---G----------KTPEVPRVRKLTGD-NAFCVACASQS-LYEISGGQSGCVKIWDLRA----------KLIHRFLKDH 120 (673)
T ss_pred ---C----------CCCccceeeccccc-hHHHHhhhhcc-eeeeccCcCceeeehhhHH----------HHHhhhccCC
Confidence 0 12334444333322 33344433333 5899999999999999986 2335567899
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC-CccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd 256 (325)
++.|+++.++-... +|++++..|.|.|-.+.++.+ ...|... ...|.-+.|+|....+|.+++.+|.|.+||
T Consensus 121 ~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 121 QSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQK------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred cceeEEEEecCCcc-eeEEeccCCcEEEEecccCcc------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 99999999998888 899999999999999988754 3344443 345668999998778899999999999999
Q ss_pred ccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecce------eeeccCeeEEEee
Q 020480 257 LRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRY------LLYKFPFFVLVFP 315 (325)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~------~~~~~~~~~~~~~ 315 (325)
+..... ...-...|..|...|+|+|.... +.|.|..+.++|.+. +.+..|+.++.|.
T Consensus 194 v~g~sp--~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~ 259 (673)
T KOG4378|consen 194 VQGMSP--IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFS 259 (673)
T ss_pred ccCCCc--ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeec
Confidence 998874 23344789999999999998773 889999999998754 3467787777764
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.65 E-value=1.6e-15 Score=133.68 Aligned_cols=176 Identities=16% Similarity=0.227 Sum_probs=125.9
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
+.....|..+|..+.|-| +..+|++++.|.++++||+.. ....-...+.+|+..|.+++|+|.++..|++|
T Consensus 93 lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~--------s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT--------SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred hcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc--------ceeecceeecccccccchhhhccCCCcceeec
Confidence 445678999999999999 668999999999999999987 33433445789999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCC--------------C-------cccceEeeecCCccEEE---EEeecCCCcEEEEEec-CCcE
Q 020480 198 SDDAQICLWDINAAPKN--------------K-------SLEAMQIFKVHEGVVED---VAWHLRHEYLFGSVGD-DQYL 252 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~--------------~-------~~~~~~~~~~~~~~v~~---v~~~p~~~~~l~s~~~-dg~i 252 (325)
+.||.|.|||++..... . .-+.++...++...|.. +.+..+. ..||+++. |+.|
T Consensus 164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~i 242 (720)
T KOG0321|consen 164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTI 242 (720)
T ss_pred cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcce
Confidence 99999999999865411 0 00112223344444544 4445554 68888887 9999
Q ss_pred EEEEccCCCCC---CCeeE--eecc---CCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480 253 LIWDLRTPSVS---KPVQS--VVAH---QSEVGVSILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 253 ~iwd~~~~~~~---~~~~~--~~~h---~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
+|||+|..... .+... +..| .-.+.++..+..|.. ....|++|..|+++..
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 99999986542 12222 2223 224677777776663 3345888988887654
No 144
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.64 E-value=3.8e-15 Score=124.97 Aligned_cols=178 Identities=23% Similarity=0.350 Sum_probs=133.8
Q ss_pred CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE
Q 020480 42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ 121 (325)
Q Consensus 42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (325)
-|+++++|.++... ++ ++.+.++.|.+|.++.... .. ...+++....
T Consensus 14 ~pv~s~dfq~n~~~---------~l-----aT~G~D~~iriW~v~r~~~-----------~~--------~~~~V~y~s~ 60 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLN---------KL-----ATAGGDKDIRIWKVNRSEP-----------GG--------GDMKVEYLSS 60 (434)
T ss_pred CceEEEEeccCccc---------ce-----ecccCccceeeeeeeecCC-----------CC--------CceeEEEeec
Confidence 37888888887641 23 3445667899999863310 00 1134555444
Q ss_pred e-ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCC------CCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480 122 I-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS------KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (325)
Q Consensus 122 ~-~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 194 (325)
+ .|..+|++++|+|+| .++|+|+.+|.|.+|....... .......+.....+.+|...+..++|+|++. ++
T Consensus 61 Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l 138 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FL 138 (434)
T ss_pred ccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-ee
Confidence 4 499999999999999 7999999999999998762111 0001122344556789999999999999999 89
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
++++.|..+++||+..+ .....+..|...+..++|.|.+ .++++-+.|...+.+.+....
T Consensus 139 ~s~s~dns~~l~Dv~~G------~l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 139 VSGSVDNSVRLWDVHAG------QLLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred eeeeccceEEEEEeccc------eeEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeee
Confidence 99999999999999998 4577888999999999999987 588899999888877776543
No 145
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=8.8e-15 Score=119.37 Aligned_cols=165 Identities=12% Similarity=0.115 Sum_probs=136.3
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-CCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
...+|+|.+|++++ ..+|++.....|.||.... .. .++.+++..|...|+.++|+|..+ .|++|+.|..
T Consensus 9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~--------~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drn 78 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLG--------ADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRN 78 (361)
T ss_pred ccCceeeeeecCCC-ceEEeccCCceEEEEEecC--------CCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCC
Confidence 45799999999998 6999999999999999877 33 677889999999999999999998 7999999999
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC-eeEeeccCCCeeEEEe
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP-VQSVVAHQSEVGVSIL 281 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~i~~ 281 (325)
-+||....+.. ..+.-.+..++..++++.|+|.. +.||+|+.-..|.||-+...+.+-. -+.-+.+.+.|++++|
T Consensus 79 ayVw~~~~~~~---WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 79 AYVWTQPSGGT---WKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred ccccccCCCCe---eccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 99999854322 13444566688899999999985 8999999999999999987764211 1223567888999999
Q ss_pred CCCCCc--cCCCCceEEeeecce
Q 020480 282 NASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 282 ~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
+|++.+ .|+.|+.|+++...+
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayI 177 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYI 177 (361)
T ss_pred cCCcceecccccCcceeEEEEee
Confidence 999986 788899999976543
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.7e-15 Score=125.09 Aligned_cols=164 Identities=18% Similarity=0.294 Sum_probs=133.5
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
+.+--+++|.++.-+|.| .+++.|+..|.+++|.+.+ + ..+..+.+|-..|+++.|+-++. +|+||+.
T Consensus 76 q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelss--------G--~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgsk 143 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSS--------G--ILLNVLSAHYQSITCLKFSDDGS-HIITGSK 143 (476)
T ss_pred hhcccccceeeeecCCCc-eEEEeecccCcEEEEEecc--------c--cHHHHHHhhccceeEEEEeCCCc-EEEecCC
Confidence 455678999999999999 7888888999999999998 3 44666789999999999999999 8999999
Q ss_pred CCcEEEEeCCCC---CCCCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480 200 DAQICLWDINAA---PKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 200 dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
||.|.+|.+-.. .......+++.|..|+-.|+++...+-+ ...++|+|.|.++++||+..+.. +.++ ....+
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L---Llti-~fp~s 219 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL---LLTI-TFPSS 219 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee---eEEE-ecCCc
Confidence 999999976432 1122446889999999999999887642 25788999999999999999873 4444 35788
Q ss_pred eeEEEeCCCCCc--cCCCCceEEeee
Q 020480 276 VGVSILNASFRL--SHEDTCTCTHRH 299 (325)
Q Consensus 276 v~~i~~~p~~~~--~~~~d~~~~~~~ 299 (325)
+.+++.+|-++. .|+.+|.+-+..
T Consensus 220 i~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 220 IKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred ceeEEEcccccEEEecCCcceEEeee
Confidence 999999998774 777777666543
No 147
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.2e-15 Score=122.83 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=124.5
Q ss_pred eccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceEEEEecCCCCCeEEEEe-
Q 020480 122 INHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGS- 198 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s- 198 (325)
..++..++.++|... +++.+.+|+.||+|++||++. ....+.....++. .+..+++.+-.+. .+++|.
T Consensus 67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs--------~~e~a~~~~~~~~~~~f~~ld~nck~~-ii~~GtE 137 (376)
T KOG1188|consen 67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS--------QAESARISWTQQSGTPFICLDLNCKKN-IIACGTE 137 (376)
T ss_pred cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec--------chhhhheeccCCCCCcceEeeccCcCC-eEEeccc
Confidence 457888888999875 568899999999999999998 3344455566665 4556666655555 677764
Q ss_pred ---CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480 199 ---DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 199 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
.+-.|.+||+|..+.. ...-...|...|++++|+|.++++|+||+.||.|.|||+.......++...-.|.+.
T Consensus 138 ~~~s~A~v~lwDvR~~qq~----l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS 213 (376)
T KOG1188|consen 138 LTRSDASVVLWDVRSEQQL----LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS 213 (376)
T ss_pred cccCceEEEEEEeccccch----hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence 4678999999987531 122346799999999999999999999999999999999977654455555568888
Q ss_pred eeEEEeCCCC--Cc-cCCCCceEEeeec
Q 020480 276 VGVSILNASF--RL-SHEDTCTCTHRHS 300 (325)
Q Consensus 276 v~~i~~~p~~--~~-~~~~d~~~~~~~~ 300 (325)
|.++.|...+ ++ .-+.+.+..+|++
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEc
Confidence 9999999887 44 3334555555554
No 148
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.1e-15 Score=119.88 Aligned_cols=173 Identities=18% Similarity=0.196 Sum_probs=124.9
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC------------------CCCC--------CCCcEE
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP------------------LDGA--------CSPDLR 173 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~------------------~~~~--------~~~~~~ 173 (325)
...+|.+.|++++|+.+| +.||+++.|+.|++|+++....... ++.+ ...++.
T Consensus 81 ~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 345799999999999999 7999999999999999976322110 0000 000000
Q ss_pred E-----------------------ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccE
Q 020480 174 L-----------------------RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV 230 (325)
Q Consensus 174 ~-----------------------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 230 (325)
+ .-|+-.+..+-..-.+. ++++++.|..|.+|+++ + +.+..+......-
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-G------q~L~~idtnq~~n 231 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-G------QLLQSIDTNQSSN 231 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-C------ceeeeeccccccc
Confidence 0 11333444444444455 89999999999999999 4 3455555555566
Q ss_pred EEEEeecCCCcEEEEEecCCcEEEEEccCCC-----CCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecce
Q 020480 231 EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS-----VSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSRY 302 (325)
Q Consensus 231 ~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~ 302 (325)
+..+.+|+| +++|+++--.-|++|.+--.+ ....+..+++|.+.|..++|+++.+ ++.+.||+.++|+...
T Consensus 232 ~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 232 YDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred cceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 778899998 799999999999999875322 1234567799999999999999877 4899999999998643
No 149
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.64 E-value=5.9e-15 Score=131.87 Aligned_cols=162 Identities=18% Similarity=0.213 Sum_probs=129.6
Q ss_pred EeccCCCeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc------------------
Q 020480 121 QINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE------------------ 180 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~------------------ 180 (325)
.-.|...|.|+.|+.. +.++||+++.|..|+|||+... ..++.++.+|.+.
T Consensus 497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---------y~l~qtld~HSssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---------YDLVQTLDGHSSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---------cchhhhhcccccceeEEEEeecCCceEEEec
Confidence 3469999999999963 3478999999999999998652 2223334444444
Q ss_pred -------------------------------eEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeee---cC
Q 020480 181 -------------------------------GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK---VH 226 (325)
Q Consensus 181 -------------------------------v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---~~ 226 (325)
+++++..|... ++++++.|..|+|||+..++. .+.|+ +|
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq------~k~FKgs~~~ 640 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQ------VKSFKGSRDH 640 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccce------eeeecccccC
Confidence 44555555555 799999999999999998854 44444 46
Q ss_pred CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecce
Q 020480 227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSRY 302 (325)
Q Consensus 227 ~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~ 302 (325)
.+....+...|.+ .++|+.+.|.++.++|.-++++ +....+|...|+.+.|.++.+ ++.+.|+.+-+|.+..
T Consensus 641 eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEc---vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 641 EGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGEC---VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCceEEEEECCCc-cEEEEeecCCceEEEEeccchh---hhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 6788889999987 7999999999999999999996 888899999999999999987 4888999999997643
No 150
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=3.2e-15 Score=127.15 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=139.7
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC---CCC---C-CCCCcEEE-ecCCCceEEEEecCC
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP---PLD---G-ACSPDLRL-RGHSTEGYGLSWSKF 189 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~---~~~---~-~~~~~~~~-~~h~~~v~~l~~~p~ 189 (325)
+.....|.-+|.+++++|++ .+..+++.+|+|.-|++....... ..+ . ...+...- .+|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 34456799999999999998 799999999999999987632110 000 0 01111111 389999999999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (325)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 269 (325)
+. +|++|+.|..|.||+.++. ..+..+.+|.+.|.+++|-. +.+-+.+++.|++|++|++..... +.++
T Consensus 214 gk-ylatgg~d~~v~Iw~~~t~------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~---vetl 282 (479)
T KOG0299|consen 214 GK-YLATGGRDRHVQIWDCDTL------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSY---VETL 282 (479)
T ss_pred Cc-EEEecCCCceEEEecCccc------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHH---HHHH
Confidence 99 8999999999999999988 45777899999999999976 457888999999999999998874 8888
Q ss_pred eccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
.+|.+.|.+|.-..-++. .|+.|.++++|++
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi 315 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI 315 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEec
Confidence 999999999988887775 6679999999987
No 151
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=99.64 E-value=8.2e-17 Score=106.80 Aligned_cols=71 Identities=54% Similarity=0.943 Sum_probs=53.4
Q ss_pred HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCC-CCCCCCcceEEEEEEecCCCCCCCeEEEEEEECC
Q 020480 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRE-EPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLP 88 (325)
Q Consensus 18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 88 (325)
+|++++||+|+|.+|++++.+.++|||++|+|.|+.. ...+.....+++++||+++...+|+|+|+++.+|
T Consensus 1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p 72 (74)
T PF12265_consen 1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGTQTSGQEQNYLYVMKVSLP 72 (74)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE---SS-S-EEEEEEEEEEE
T ss_pred CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEECcCCCCCCEEEEEEEeCC
Confidence 6899999999999999999999999999999999987 4434334488999999999999999999999876
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.1e-14 Score=125.76 Aligned_cols=158 Identities=12% Similarity=0.175 Sum_probs=126.9
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
+-.+.|..++|++.+ .|++.+.+|.|.-||+.+ .++...+....+.|++++.+|.+. .++.|+.||.
T Consensus 67 ~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~----------lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGv 133 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT----------LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGV 133 (691)
T ss_pred CCCCceeeEEEccCC--eEEeecCCceEEEEeccc----------CceeEEecCCCcceeEEEeCCccc-eEEeecCCce
Confidence 456899999999755 678888999999999988 566777888889999999999988 8999999997
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--------eccCC
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--------VAHQS 274 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~h~~ 274 (325)
+..++...+. +...+.+...++.|.+++|+|++ ..+++|+.||.|++||...+.. ++.. ++...
T Consensus 134 l~~~s~~p~~----I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t---~~~~~~~~d~l~k~~~~ 205 (691)
T KOG2048|consen 134 LYDFSIGPDK----ITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQT---LHIITMQLDRLSKREPT 205 (691)
T ss_pred EEEEecCCce----EEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCce---EEEeeecccccccCCce
Confidence 7777766542 23445566678999999999997 6799999999999999998874 3311 11334
Q ss_pred CeeEEEeCCCCCc-cCCCCceEEeeecc
Q 020480 275 EVGVSILNASFRL-SHEDTCTCTHRHSR 301 (325)
Q Consensus 275 ~v~~i~~~p~~~~-~~~~d~~~~~~~~~ 301 (325)
-|+++.|-.++.+ +|...|++++||..
T Consensus 206 iVWSv~~Lrd~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 206 IVWSVLFLRDSTIASGDSAGTVTFWDSI 233 (691)
T ss_pred EEEEEEEeecCcEEEecCCceEEEEccc
Confidence 5788888888886 77788999999853
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.62 E-value=1.8e-14 Score=118.01 Aligned_cols=160 Identities=20% Similarity=0.243 Sum_probs=125.1
Q ss_pred cCCCeeEEEecCC---CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 124 HDGEVNRARYMPQ---NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 124 h~~~v~~v~~~~~---~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
|......++|+-+ +.-++|+|+.-|.|+|.|+.. ......+.+|...|..+.++|..++++++||.|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------hhhccceeccCccchhhhcCCCCCcEEEEecCC
Confidence 5666667777653 235889999999999999987 344667889999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCcccceEee---ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC--------------
Q 020480 201 AQICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------- 263 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-------------- 263 (325)
.+|++|++++. .++..+ .+|...|.++.|++++ ..|++||.|.+|++|++...+..
T Consensus 158 ~svRlwnI~~~------~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 158 HSVRLWNIQTD------VCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred ceEEEEeccCC------eEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 99999999987 455554 5799999999999998 59999999999999999842210
Q ss_pred ----------CCee-EeeccCCCeeEEEeCCCCCccCCCCceEEeeec
Q 020480 264 ----------KPVQ-SVVAHQSEVGVSILNASFRLSHEDTCTCTHRHS 300 (325)
Q Consensus 264 ----------~~~~-~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~ 300 (325)
-|.. +-..|...|-|+.|--+-.++-|.++.+..|.-
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKP 278 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEec
Confidence 0111 223577777777777666666666777777754
No 154
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.62 E-value=1.3e-14 Score=129.27 Aligned_cols=164 Identities=18% Similarity=0.208 Sum_probs=127.8
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCC-----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSA-----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 194 (325)
+.++|...|.+++.+|.+ +++|+++... .|++|+... ...+..+.+|+-.|+.++|+|++. +|
T Consensus 520 KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~----------W~~~~~L~~HsLTVT~l~FSpdg~-~L 587 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTAN----------WLQVQELEGHSLTVTRLAFSPDGR-YL 587 (764)
T ss_pred HhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccc----------hhhhheecccceEEEEEEECCCCc-EE
Confidence 567899999999999998 7999987654 588999877 555667999999999999999999 89
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCee--Eeecc
Q 020480 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SVVAH 272 (325)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~h 272 (325)
++++.|.++.+|......... ......+.|+.-|++..|+|++ .+|||+|.|.+|++|....... +.+. ....+
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e--~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~ 663 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDE--FRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVKVWEEPDLRD-KYISRFACLKF 663 (764)
T ss_pred EEeecCceEEeeeeecccchh--hhhccccccceEEEEcccCccc-ceeEEecCCceEEEEeccCchh-hhhhhhchhcc
Confidence 999999999999986543211 1123367899999999999996 6799999999999999887731 1122 23457
Q ss_pred CCCeeEEEeCCCCCc-------cCCCCceEEeee
Q 020480 273 QSEVGVSILNASFRL-------SHEDTCTCTHRH 299 (325)
Q Consensus 273 ~~~v~~i~~~p~~~~-------~~~~d~~~~~~~ 299 (325)
..+|++++|.|--.. .|-..|.+.+|.
T Consensus 664 ~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 664 SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred CCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 889999999884322 344445555554
No 155
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=1e-14 Score=126.39 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=117.7
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC------------------CCCCCCCcEEEecCCCceEEEEe
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP------------------LDGACSPDLRLRGHSTEGYGLSW 186 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~------------------~~~~~~~~~~~~~h~~~v~~l~~ 186 (325)
+..|+|+.|-|-+..+++++-.+|.+++||......... ......|+..+.--.+.|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999998878899999999999998744322111 01112444444444568899999
Q ss_pred cCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCe
Q 020480 187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV 266 (325)
Q Consensus 187 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 266 (325)
+|++. +||+.+.||.+||||..+.. .+..++..-+...|++|+|+| .+|++|+.|..|.||.+...+. +
T Consensus 299 S~DG~-~LA~VSqDGfLRvF~fdt~e------Llg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRV---V 367 (636)
T KOG2394|consen 299 SPDGK-YLATVSQDGFLRIFDFDTQE------LLGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRV---V 367 (636)
T ss_pred cCCCc-eEEEEecCceEEEeeccHHH------HHHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceE---E
Confidence 99999 89999999999999998752 344445555789999999998 6999999999999999998884 7
Q ss_pred eEeeccCCCeeEEEeCC
Q 020480 267 QSVVAHQSEVGVSILNA 283 (325)
Q Consensus 267 ~~~~~h~~~v~~i~~~p 283 (325)
..-++|+++|+.|+|+|
T Consensus 368 ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccccccceeeEeecc
Confidence 77799999999999994
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.61 E-value=2.2e-14 Score=117.29 Aligned_cols=182 Identities=17% Similarity=0.248 Sum_probs=132.6
Q ss_pred CCCCCCCCCCceEEE-EEeccCC---CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-----
Q 020480 105 DFGGFGCANGKVQII-QQINHDG---EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR----- 175 (325)
Q Consensus 105 ~~~~~~~~~~~~~~~-~~~~h~~---~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~----- 175 (325)
-+..|+.-+++++.. +-+.|.. +..+++|+|+|. .|.+ +....|++||+... ++..++....
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~Rp-------Gr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRP-------GRDCPVYTTVTKGKF 204 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCC-------CCCCcchhhhhcccc
Confidence 344555555555443 2233543 446799999994 5555 56789999999542 2223333222
Q ss_pred cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCCcEEE
Q 020480 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLI 254 (325)
Q Consensus 176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg~i~i 254 (325)
+..+-+.+++|+|.....++.|+....+-|+.-... .++..+.+|.+.|+.++|+++|. .|.+|+ .|..|..
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~------~pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILC 277 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCC------CceeeecccCCCeeeEEeccCcC-eecccccCCCeEEE
Confidence 336778999999998888999999988888876655 56778889999999999999985 555666 6888999
Q ss_pred EEccCCCCCCCeeEeeccCC-CeeEEEe--CCCCCc--cCCCCceEEeeecceee
Q 020480 255 WDLRTPSVSKPVQSVVAHQS-EVGVSIL--NASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 255 wd~~~~~~~~~~~~~~~h~~-~v~~i~~--~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
||+|.... ++..+.+|.. .-..|-| .|.+++ +|+.||.+++|++....
T Consensus 278 WDiR~~~~--pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 278 WDIRYSRD--PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred Eeehhccc--hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 99998876 7888888876 4445666 477776 67789999999987643
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.61 E-value=1.4e-14 Score=121.57 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=129.0
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
...+|..+.|.+...+.+|+|+.|..|++|.+........ .........+..|..+|..+.|+|+|. +|+||+.+|.|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v 89 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-DMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEV 89 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-ceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceE
Confidence 4568999999987756999999999999999876332210 012233456778999999999999999 99999999999
Q ss_pred EEEeCCCCCC----------CCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480 204 CLWDINAAPK----------NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 204 ~iwd~~~~~~----------~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
.+|....... ...........+|...|+.++|+|++ +++++++.|.++++||+..+.. ...+..|.
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l---~~~~~dh~ 165 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQL---LAILDDHE 165 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEecccee---Eeeccccc
Confidence 9997661100 11112345567899999999999997 7999999999999999999984 77888999
Q ss_pred CCeeEEEeCCCCCc--cCCCCc
Q 020480 274 SEVGVSILNASFRL--SHEDTC 293 (325)
Q Consensus 274 ~~v~~i~~~p~~~~--~~~~d~ 293 (325)
.-+..++|.|-+++ +-+.|.
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred cccceeecchhhhhhhhhccCc
Confidence 99999999998885 334444
No 158
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=7.9e-15 Score=127.48 Aligned_cols=178 Identities=19% Similarity=0.247 Sum_probs=138.7
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCC-CCeEEEEe
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFK-EGHLLSGS 198 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~-~~~l~s~s 198 (325)
..+|+|.|+|+.|+.+| .+|++|+.|-.+.|||.-. .++++.+ .+|+..|.++.|-|.. ..+++||.
T Consensus 46 L~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFE----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hccccceecceeecCCC-CEEeecCCcceEEeecchh----------cceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 45799999999999999 7999999999999999876 4555554 5899999999999853 34789999
Q ss_pred CCCcEEEEeCCCCCCC----CcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE------
Q 020480 199 DDAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS------ 268 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------ 268 (325)
.|..|+++|+...+.. ......+.+..|...|..++-.|.+++.|-+++.||+++-+|+|......+-..
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 9999999999864322 122356667889999999999999999999999999999999997542112111
Q ss_pred -eeccCCCeeEEEeCCCCC---ccCCCCceEEeeecceeeeccCe
Q 020480 269 -VVAHQSEVGVSILNASFR---LSHEDTCTCTHRHSRYLLYKFPF 309 (325)
Q Consensus 269 -~~~h~~~v~~i~~~p~~~---~~~~~d~~~~~~~~~~~~~~~~~ 309 (325)
+...--...|+..+|... +.|+.|-.++++|.|..+-.++.
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s 239 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRS 239 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCC
Confidence 111223567889999766 38899999999997766544443
No 159
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=7.1e-14 Score=114.15 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=154.8
Q ss_pred cCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceE
Q 020480 38 HALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQ 117 (325)
Q Consensus 38 ~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (325)
|...-|+++.+|.++.. .++++.+ ++.+.|++..-. +.-..
T Consensus 7 ~~~~~pitchAwn~drt----------~iAv~~~-----~~evhiy~~~~~------------------------~~w~~ 47 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRT----------QIAVSPN-----NHEVHIYSMLGA------------------------DLWEP 47 (361)
T ss_pred eeccCceeeeeecCCCc----------eEEeccC-----CceEEEEEecCC------------------------CCcee
Confidence 33455788999999875 4545443 246778876411 11112
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
......|...|+.|+|+|.. +.|++|+.|..-+||.... ++..++...+..+..+++++.|+|.++ .|++|
T Consensus 48 ~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~-------~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVg 118 (361)
T KOG1523|consen 48 AHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS-------GGTWKPTLVLLRINRAATCVKWSPKEN-KFAVG 118 (361)
T ss_pred ceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC-------CCeeccceeEEEeccceeeEeecCcCc-eEEec
Confidence 22344699999999999987 6899999999999999843 267888888889999999999999988 99999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC--------------
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------- 263 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-------------- 263 (325)
+....|.||-++....-+ ...+.-+.+.+.|.+++|+|++ -++++|+.|+..|||..--....
T Consensus 119 Sgar~isVcy~E~ENdWW--VsKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PF 195 (361)
T KOG1523|consen 119 SGARLISVCYYEQENDWW--VSKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPF 195 (361)
T ss_pred cCccEEEEEEEeccccee--hhhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcH
Confidence 999999999887643211 1233446678899999999986 69999999999999976432110
Q ss_pred -CCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480 264 -KPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH 299 (325)
Q Consensus 264 -~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~ 299 (325)
+.+..+....+.|..+.|+|+|.. -.+.|.++.+-+
T Consensus 196 G~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 196 GQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred HHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 112222345678999999999874 456677776643
No 160
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.6e-14 Score=120.94 Aligned_cols=169 Identities=12% Similarity=0.130 Sum_probs=125.4
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceEEEEecCCCCCeEEEEe
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s 198 (325)
..+...+.|..++|+.++ +.|.+++.+|.|.+||++. ...++++... .-..++++.++++. +||+|+
T Consensus 339 ~s~KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~----------~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS 406 (514)
T KOG2055|consen 339 TSFKIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQ----------NSCLHRFVDDGSVHGTSLCISLNGS-YLATGS 406 (514)
T ss_pred heeeeccEEeeEEEecCC-cEEEEEcCCceEEEEecCC----------cceEEEEeecCccceeeeeecCCCc-eEEecc
Confidence 344567889999999888 5666667899999999997 2335555422 12346788889998 999999
Q ss_pred CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe--cCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG--DDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 276 (325)
..|.|.|||.+........+|+..+..-...|++++|+|+. .+||.|| .+..+|+-.+.+.......-.....-+.|
T Consensus 407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 99999999987765555557787887788899999999997 5776665 57789998887755311111112234569
Q ss_pred eEEEeCCCCCc--cCCCCceEEeeecc
Q 020480 277 GVSILNASFRL--SHEDTCTCTHRHSR 301 (325)
Q Consensus 277 ~~i~~~p~~~~--~~~~d~~~~~~~~~ 301 (325)
+|++|+|+|-+ .|...+.+.+|.+.
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeec
Confidence 99999997664 78888899888764
No 161
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.3e-13 Score=111.17 Aligned_cols=123 Identities=12% Similarity=0.167 Sum_probs=97.9
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
.|+-.|-.+-....+ .+|++++.|..|.+|++.. +.+..+......-+..+.+|+|+ ++++++..--
T Consensus 185 kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lkG-----------q~L~~idtnq~~n~~aavSP~GR-Fia~~gFTpD 251 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNA-KYIMSASLDTKICLWDLKG-----------QLLQSIDTNQSSNYDAAVSPDGR-FIAVSGFTPD 251 (420)
T ss_pred hcccceEEEeecCCc-eEEEEecCCCcEEEEecCC-----------ceeeeeccccccccceeeCCCCc-EEEEecCCCC
Confidence 355566666665544 8999999999999999986 33555555566677889999999 8999999999
Q ss_pred EEEEeCCCCCCC--CcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 203 ICLWDINAAPKN--KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 203 i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
|++|.+--.+.+ +....+..+.+|.+.|..++|+++. ..+++.+.||+++|||+.-
T Consensus 252 VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 252 VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccc
Confidence 999987554433 3334566789999999999999986 7889999999999999853
No 162
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.59 E-value=9.5e-15 Score=129.01 Aligned_cols=149 Identities=18% Similarity=0.281 Sum_probs=120.3
Q ss_pred EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-CcccceEe
Q 020480 144 KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQI 222 (325)
Q Consensus 144 g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~ 222 (325)
.+..|.|-||+++....... + .+-.+ -....|+++.|.|-....|+.++.||.|++|.+..+... ....+...
T Consensus 599 ~g~gG~iai~el~~PGrLPD--g---v~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~ 672 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPD--G---VMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI 672 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCc--c---ccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee
Confidence 45578999999987432211 1 11112 234679999999988889999999999999998765432 23356777
Q ss_pred eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 223 ~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
+.+|...|+++.|||-...+|++++.|-+|++||+++... ...+.+|++.|.+++|+|+|+. +.+.|++++++.-
T Consensus 673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~---~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL---YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh---hheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 8999999999999998888999999999999999999884 6788999999999999999996 7789999999754
Q ss_pred c
Q 020480 301 R 301 (325)
Q Consensus 301 ~ 301 (325)
+
T Consensus 750 r 750 (1012)
T KOG1445|consen 750 R 750 (1012)
T ss_pred C
Confidence 3
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=4.9e-14 Score=122.90 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=137.3
Q ss_pred EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (325)
Q Consensus 117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 196 (325)
.+....+|.++|.|+++.+.+ ..+.+|+.||+|+.|++..................+.||++.|+.+++++... .|++
T Consensus 336 pi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Lls 413 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLS 413 (577)
T ss_pred eeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceee
Confidence 445567899999999999988 79999999999999988732221111111233456889999999999999887 7999
Q ss_pred EeCCCcEEEEeCCCCCCC-----C-------------c--------------------ccceEeee-------cCCccEE
Q 020480 197 GSDDAQICLWDINAAPKN-----K-------------S--------------------LEAMQIFK-------VHEGVVE 231 (325)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~-----~-------------~--------------------~~~~~~~~-------~~~~~v~ 231 (325)
|+.||++++|+....... + . ...+..+. .....++
T Consensus 414 cs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred ecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 999999999987654320 0 0 00000110 0124577
Q ss_pred EEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 232 ~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
.+.++|.+ .+.+++..|+.|+++|..++. +++...+|...++++++.|+|.+ +++.|+.+++|.+..
T Consensus 494 ~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~---~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 494 KVVSHPTA-DITFTAHEDRSIRFFDNKTGK---ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred eEEecCCC-CeeEecccCCceecccccccc---cchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 88899987 477899999999999999998 58888999999999999999985 899999999997643
No 164
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.4e-14 Score=127.20 Aligned_cols=263 Identities=13% Similarity=0.110 Sum_probs=171.7
Q ss_pred HHHHhhhHhcC-hhHHHHhhhcCCCCCceEEEEeeCCCCCC---CCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480 18 NEEYKIWKKNT-PFLYDLVITHALEWPSLTVEWLPDREEPP---GKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 18 ~~~~~iw~~~~-~~~y~~~~~~~~~~p~~s~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 93 (325)
+..|.||+... .++-.+++... .-.+-+++|.+.+...+ +.......+..+.+-..-..+...||.+.+......
T Consensus 46 ~g~IEiwN~~~~w~~~~vi~g~~-drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~ 124 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEPVIHGPE-DRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTI 124 (691)
T ss_pred CCcEEEEccCCCceeeEEEecCC-CCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccce
Confidence 45688998855 44445555543 33677999996543221 111111222222221112223345677665433333
Q ss_pred cccCCCCcccCCCCCCCCCCCceEEEEEec-cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480 94 NDARHYDDDRSDFGGFGCANGKVQIIQQIN-HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL 172 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 172 (325)
+...+.+. -+..+.....+++..+.+. .++.|.++.|+|++ ..+|+|+.||.|++||...+. ...+.
T Consensus 125 l~IgcddG---vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~--------t~~~~ 192 (691)
T KOG2048|consen 125 LAIGCDDG---VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQ--------TLHII 192 (691)
T ss_pred EEeecCCc---eEEEEecCCceEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCc--------eEEEe
Confidence 33332221 2233333445666655555 45999999999999 689999999999999998721 11111
Q ss_pred E--Ee----cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEE
Q 020480 173 R--LR----GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV 246 (325)
Q Consensus 173 ~--~~----~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~ 246 (325)
+ +. +..--|+++.+-.++ .+++|...|+|.+||...+ ..++.+..|...|.+++-.+++ ..+.++
T Consensus 193 ~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~g------TLiqS~~~h~adVl~Lav~~~~-d~vfsa 263 (691)
T KOG2048|consen 193 TMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFG------TLIQSHSCHDADVLALAVADNE-DRVFSA 263 (691)
T ss_pred eecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCc------chhhhhhhhhcceeEEEEcCCC-CeEEEc
Confidence 1 11 122347888887665 5999999999999999988 4577788899999999999886 578899
Q ss_pred ecCCcEEEEEccCCCC-CCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480 247 GDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY 302 (325)
Q Consensus 247 ~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~ 302 (325)
|.|+.|--|...+... +........|...|.+++..++-.++||.|.++.+-..+.
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSRE 320 (691)
T ss_pred cCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccc
Confidence 9999988888776643 1122333678889999999999777999999988865554
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=4.3e-14 Score=116.29 Aligned_cols=147 Identities=15% Similarity=0.217 Sum_probs=115.9
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC-CCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSL 217 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 217 (325)
+.+|++...|.|++||..+ ...+..+.++...+..+.|... +...+.+|+.||+|++||+|...+
T Consensus 41 ~~vav~lSngsv~lyd~~t----------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e---- 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT----------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE---- 106 (376)
T ss_pred eeEEEEecCCeEEEEeccc----------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh----
Confidence 5789999999999999987 4557778888888888888664 556899999999999999998765
Q ss_pred cceEeeecCC-ccEEEEEeecCCCcEEEEEe----cCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCCCCC---cc
Q 020480 218 EAMQIFKVHE-GVVEDVAWHLRHEYLFGSVG----DDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNASFR---LS 288 (325)
Q Consensus 218 ~~~~~~~~~~-~~v~~v~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~---~~ 288 (325)
.+...+..+. .+..+++.+-.+ +++++|. .+-.|.+||+|..+. ++..+ ..|...|++|.|+|+.. ++
T Consensus 107 ~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 107 SARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred hhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEe
Confidence 3444556665 355566655443 6787775 577899999999875 45554 68999999999999765 49
Q ss_pred CCCCceEEeeecce
Q 020480 289 HEDTCTCTHRHSRY 302 (325)
Q Consensus 289 ~~~d~~~~~~~~~~ 302 (325)
||-||.+.++++..
T Consensus 184 GSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKK 197 (376)
T ss_pred ecccceEEeeecCC
Confidence 99999999988754
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=7.1e-14 Score=110.14 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=124.5
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw 206 (325)
.|.+-+++|.+ ++|++|..+|.|.++.+.+............++...++|.++++.++|.. . +|++|+ ||.|+-|
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~-~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D-FLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h-heeecc-CceEEEe
Confidence 45666889988 79999999999999999875443322223345666789999999999983 3 677766 5999999
Q ss_pred eCCCCCCCCcccceEeee-------cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 207 DINAAPKNKSLEAMQIFK-------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 207 d~~~~~~~~~~~~~~~~~-------~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
.-+...+....+++.... -.-..|+++...|.. +-++.++.|+.++-||+.+++- ..++.+|++-|.++
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i---~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI---QREYRGHTDYVHSV 162 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEE---EEEEcCCcceeeee
Confidence 876544321111111111 112468999999976 4555666899999999999984 67789999999999
Q ss_pred Ee-CCCCCc-cCCCCceEEeeeccee
Q 020480 280 IL-NASFRL-SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 280 ~~-~p~~~~-~~~~d~~~~~~~~~~~ 303 (325)
+- +.++++ +|+.||++|+|+.+..
T Consensus 163 v~R~~~~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred eecccCcceeecCCCccEEEEecccc
Confidence 98 667775 9999999999998764
No 167
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.55 E-value=1.7e-13 Score=124.52 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=125.2
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
...|.++|+.++...-+ +.+++++.+|.+.+||... ......+. -...+..+..+.... +++.+..|
T Consensus 489 ~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~----------k~l~~~l~-l~~~~~~iv~hr~s~-l~a~~~dd 555 (910)
T KOG1539|consen 489 SPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKK----------KVLKKSLR-LGSSITGIVYHRVSD-LLAIALDD 555 (910)
T ss_pred CccccCceeEEEecCCC-ceEEEccCcceEEEEecCC----------cceeeeec-cCCCcceeeeeehhh-hhhhhcCc
Confidence 35799999999999887 6899999999999999987 22333333 334567777777766 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
-.|+++|+.+. ..++.|.+|++.|++++|||+| ..+++++.|++||+||+.++.. +-.+ .-..++.++.
T Consensus 556 f~I~vvD~~t~------kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~l---ID~~-~vd~~~~sls 624 (910)
T KOG1539|consen 556 FSIRVVDVVTR------KVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTL---IDGL-LVDSPCTSLS 624 (910)
T ss_pred eeEEEEEchhh------hhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcce---eeeE-ecCCcceeeE
Confidence 99999999876 4578899999999999999998 6999999999999999999884 4443 3578899999
Q ss_pred eCCCCCc--cCCCC-ceEEeeec
Q 020480 281 LNASFRL--SHEDT-CTCTHRHS 300 (325)
Q Consensus 281 ~~p~~~~--~~~~d-~~~~~~~~ 300 (325)
|+|+|.+ +...| ..+.+|..
T Consensus 625 ~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 625 FSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ECCCCCEEEEEEecCceEEEEEc
Confidence 9999996 22222 45666643
No 168
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.55 E-value=2.6e-14 Score=127.81 Aligned_cols=162 Identities=18% Similarity=0.163 Sum_probs=122.8
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC--CCCeEEEEeC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSGSD 199 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s~ 199 (325)
....-.+.+++.+|++ ..||+|..-|+++||++.+ ......+..|.++|.++.++.. +..+|++++.
T Consensus 456 ~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~----------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQE----------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred cCcccceEEEEECCCc-ceecccCccCceEEEEehh----------hhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 3456689999999999 7999999999999999987 4556678899999999999753 2348999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCc-------------------------------------------------cE
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEG-------------------------------------------------VV 230 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~v 230 (325)
|..|+|||+...- .+++++.+|++ .+
T Consensus 525 dRlIHV~Dv~rny-----~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNY-----DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred CceEEEEeccccc-----chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 9999999986531 22333333333 34
Q ss_pred EEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 231 EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 231 ~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
++++..|.. .++++++.|..|+|||+.+++..+....-..|.+..-.+...|.|.+ +...|.++.++|.
T Consensus 600 YDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 600 YDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred EEeeeCCCc-ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 555555553 58899999999999999999963333333557778888999999986 4456777777664
No 169
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.1e-13 Score=116.90 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=119.1
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeC
Q 020480 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208 (325)
Q Consensus 129 ~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~ 208 (325)
.+++|+.+| ..+++|+.||.+|+|+++. ..++.....|...|.+++|+|++. +|++-+.| ..+||++
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps----------~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~ 214 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPS----------MLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSV 214 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCc----------chhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEe
Confidence 678999998 6999999999999999876 455666778999999999999999 89999999 9999999
Q ss_pred CCCCCCCc-----------------------ccc---------eEe-----e-----------ecCCccEEEEEeecCCC
Q 020480 209 NAAPKNKS-----------------------LEA---------MQI-----F-----------KVHEGVVEDVAWHLRHE 240 (325)
Q Consensus 209 ~~~~~~~~-----------------------~~~---------~~~-----~-----------~~~~~~v~~v~~~p~~~ 240 (325)
+++..... +.+ +.. . ......|.+++.+++|
T Consensus 215 ~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG- 293 (398)
T KOG0771|consen 215 NTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG- 293 (398)
T ss_pred ccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-
Confidence 88721100 000 000 0 0012368899999987
Q ss_pred cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH 299 (325)
Q Consensus 241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~ 299 (325)
.++|.|+.||.|-|++....+. ....-+.|...|+.+.|+|+.+. +.+.+....+-.
T Consensus 294 kf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 294 KFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred cEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 7999999999999999998875 23334789999999999998774 445555555543
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.54 E-value=2.2e-13 Score=123.68 Aligned_cols=189 Identities=19% Similarity=0.190 Sum_probs=139.2
Q ss_pred CCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEec
Q 020480 108 GFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS 187 (325)
Q Consensus 108 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 187 (325)
.|+...+ ......+.-+..|.++.|+|..++++|.|+.+|+|.+||++...... ..........|..+++.+.|-
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----PSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----CcccccccccCCcCeEEEEEe
Confidence 3444444 33334567789999999999999999999999999999998733211 011112234688999999996
Q ss_pred CCCC-CeEEEEeCCCcEEEEeCCCCCCC----------------------------------------------------
Q 020480 188 KFKE-GHLLSGSDDAQICLWDINAAPKN---------------------------------------------------- 214 (325)
Q Consensus 188 p~~~-~~l~s~s~dg~i~iwd~~~~~~~---------------------------------------------------- 214 (325)
.+.. .-|++++.||.|..|+++.....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 5433 24999999999999987654210
Q ss_pred -Ccc----cceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC---
Q 020480 215 -KSL----EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--- 286 (325)
Q Consensus 215 -~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--- 286 (325)
... +....+..|.+.|+++.++|-+..+|.+++ |.+++||....... |+..+..+...|++++|||...
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~--Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS--PLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC--cchhhhhccceeeeeEEcCcCceEE
Confidence 000 112244567789999999998877777777 99999999884443 7888888888999999999776
Q ss_pred ccCCCCceEEeeecceee
Q 020480 287 LSHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 287 ~~~~~d~~~~~~~~~~~~ 304 (325)
+++..||.+-+||+..-.
T Consensus 458 ~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred EEEcCCCceehhhhhccc
Confidence 277889999999986644
No 171
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.54 E-value=2.8e-13 Score=116.85 Aligned_cols=223 Identities=17% Similarity=0.255 Sum_probs=154.1
Q ss_pred HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR 97 (325)
Q Consensus 18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 97 (325)
+..+++|+.+. ........-|+.+++|.|.+ .+++|+.+. ...+++..
T Consensus 389 dk~v~lW~~~k-----~~wt~~~~d~~~~~~fhpsg-----------~va~Gt~~G-----~w~V~d~e----------- 436 (626)
T KOG2106|consen 389 DKHVRLWNDHK-----LEWTKIIEDPAECADFHPSG-----------VVAVGTATG-----RWFVLDTE----------- 436 (626)
T ss_pred cceEEEccCCc-----eeEEEEecCceeEeeccCcc-----------eEEEeeccc-----eEEEEecc-----------
Confidence 45678888555 33444556688899999976 377887655 34444432
Q ss_pred CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480 98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH 177 (325)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h 177 (325)
. -..+....-..++++++|+|+| .+||.|+.|+.|++|.+.... .....+.. .|
T Consensus 437 ---------------~--~~lv~~~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g------~~y~r~~k--~~ 490 (626)
T KOG2106|consen 437 ---------------T--QDLVTIHTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANG------RKYSRVGK--CS 490 (626)
T ss_pred ---------------c--ceeEEEEecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCC------cEEEEeee--ec
Confidence 1 1222222238899999999999 799999999999999998621 11122222 33
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc--------ceE---ee-ecCCccEEEEEeecCCCcEEEE
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE--------AMQ---IF-KVHEGVVEDVAWHLRHEYLFGS 245 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~---~~-~~~~~~v~~v~~~p~~~~~l~s 245 (325)
.++|+.++|+++++ ++.+-+.|-.|..|...........+ +.- .+ ..+...|+.++-+... .++|+
T Consensus 491 gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~-~~lA~ 568 (626)
T KOG2106|consen 491 GSPITHLDWSSDSQ-FLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE-KLLAS 568 (626)
T ss_pred CceeEEeeecCCCc-eEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh-hhhhc
Confidence 48999999999999 89999999999999544332211100 000 01 1244455555555544 58999
Q ss_pred EecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC-c-cCCCCceEEeeec
Q 020480 246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR-L-SHEDTCTCTHRHS 300 (325)
Q Consensus 246 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~-~~~~d~~~~~~~~ 300 (325)
|.+.|+|++|.....+...+.+.+.+|.+.|.+++|.-... + +.+.|.++..|.+
T Consensus 569 gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 569 GDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999999999887776668889999999999999986554 3 5558888888864
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.2e-12 Score=103.20 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=120.9
Q ss_pred CCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC---CCcEEEecCCCceEEEEecCC
Q 020480 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGAC---SPDLRLRGHSTEGYGLSWSKF 189 (325)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~l~~~p~ 189 (325)
.++...+...+|.++|+.++|.. .+|.+|+ ||.|+-|..++.......+..+ .|.++-...-..|.++...|.
T Consensus 50 ~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~ 125 (325)
T KOG0649|consen 50 PGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS 125 (325)
T ss_pred CCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence 45666676789999999999984 4677755 5999999987643322100000 111110011236789999998
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (325)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 269 (325)
.+ -+++++.|+.++-||++++ ...+.+++|+..|.++.--... ..+.+|+.||++|+||.++.++.+.+..+
T Consensus 126 en-Si~~AgGD~~~y~~dlE~G------~i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 126 EN-SILFAGGDGVIYQVDLEDG------RIQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred CC-cEEEecCCeEEEEEEecCC------EEEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccc
Confidence 88 4666679999999999998 5578899999999999874333 35679999999999999999863333222
Q ss_pred e------cc-CCCeeEEEeCCCCCccCCCCceEEeeeccee
Q 020480 270 V------AH-QSEVGVSILNASFRLSHEDTCTCTHRHSRYL 303 (325)
Q Consensus 270 ~------~h-~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~~ 303 (325)
+ .| ...|-+++-+.+-. .++.-....+|.++..
T Consensus 198 k~~~~lRp~~g~wigala~~edWl-vCGgGp~lslwhLrss 237 (325)
T KOG0649|consen 198 KNPNLLRPDWGKWIGALAVNEDWL-VCGGGPKLSLWHLRSS 237 (325)
T ss_pred cChhhcCcccCceeEEEeccCceE-EecCCCceeEEeccCC
Confidence 1 11 23566666665543 4555566777777653
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.53 E-value=8.7e-13 Score=119.81 Aligned_cols=249 Identities=17% Similarity=0.165 Sum_probs=165.9
Q ss_pred hhHHHHhhhHhcChhH--H--HHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCC
Q 020480 16 LINEEYKIWKKNTPFL--Y--DLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDD 91 (325)
Q Consensus 16 ~~~~~~~iw~~~~~~~--y--~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 91 (325)
..+.+|-+|+...... - -....+...-||+.+-|..+... ..++.++. +..|+.|++..-...
T Consensus 262 ~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~--------~~f~s~ss-----DG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 262 CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN--------TEFFSLSS-----DGSICSWDTDMLSLP 328 (555)
T ss_pred ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC--------CceEEEec-----CCcEeeeeccccccc
Confidence 3556677777766433 1 12333444568999999996542 12322222 236777755422111
Q ss_pred CCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc
Q 020480 92 SENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD 171 (325)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~ 171 (325)
.+.... +...+......-...+++++|.+..++.|++|+..|.|.--+......... ...++.
T Consensus 329 ~e~~~~---------------~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--~~~~~~ 391 (555)
T KOG1587|consen 329 VEGLLL---------------ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--VSYKGH 391 (555)
T ss_pred hhhccc---------------ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--cccccc
Confidence 111000 011111112234467889999999989999999999998744333110000 011334
Q ss_pred EEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc
Q 020480 172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY 251 (325)
Q Consensus 172 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~ 251 (325)
..+..|.++|+.+.++|-+...+++++ |.+++||...... .++..+..+...|++++|||..+.+|+++..||.
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~-----~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA-----SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC-----CcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 456678999999999999985555555 9999999987322 4566777788889999999999999999999999
Q ss_pred EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480 252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR 301 (325)
Q Consensus 252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~ 301 (325)
|.+||+..... .|+.+...+....+.+.|++.|++ .|...|++.++++.
T Consensus 466 l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 466 LDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 99999997663 477777767777888999998986 66777788887764
No 174
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.1e-12 Score=120.58 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=111.0
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
...+|.++|.++.|+|.+ ++||+.+.||.|++|++.........++ ..+...+ .....+..++|+|++. .|+....
T Consensus 133 ~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~-v~k~n~~-~~s~i~~~~aW~Pk~g-~la~~~~ 208 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTG-VDKDNEF-ILSRICTRLAWHPKGG-TLAVPPV 208 (933)
T ss_pred eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhccc-CCccccc-cccceeeeeeecCCCC-eEEeecc
Confidence 467899999999999998 7999999999999999987221110000 0000000 1145678899999988 6888889
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
|+.|++|+.........+ .-..+...+..++|+|.| .+||+++.+|.|-|||..+.. . +.....|.++
T Consensus 209 d~~Vkvy~r~~we~~f~L----r~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~----~---~~~~~~Vc~~ 276 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKL----RDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE----R---HEFKRAVCCE 276 (933)
T ss_pred CCeEEEEccCCceeheee----cccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch----h---ccccceeEEE
Confidence 999999998876442111 123345559999999997 699999999999999998844 1 2235679999
Q ss_pred EeCCCCC
Q 020480 280 ILNASFR 286 (325)
Q Consensus 280 ~~~p~~~ 286 (325)
+|.|++.
T Consensus 277 aw~p~~n 283 (933)
T KOG1274|consen 277 AWKPNAN 283 (933)
T ss_pred ecCCCCC
Confidence 9999865
No 175
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.51 E-value=6.4e-12 Score=108.59 Aligned_cols=182 Identities=14% Similarity=0.168 Sum_probs=130.8
Q ss_pred CCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCC---CC-----------C----------
Q 020480 109 FGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSK---PP-----------L---------- 164 (325)
Q Consensus 109 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~---~~-----------~---------- 164 (325)
|+....++..... .|.+.|.+++...+| .|++|+.|..|..||-.-.... .. .
T Consensus 272 w~~~~~~~~k~~~-aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtr 348 (626)
T KOG2106|consen 272 WSKGTNRISKQVH-AHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTR 348 (626)
T ss_pred EeCCCceEEeEee-ecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeecc
Confidence 3333444444333 899999999999988 4666999999999983221100 00 0
Q ss_pred ----CCC--CCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480 165 ----DGA--CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR 238 (325)
Q Consensus 165 ----~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 238 (325)
.+. ........+|....+.++.+|..+ +++|++.|+.+++|+ . . ++..+.. -..++.++.|+|.
T Consensus 349 N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~-~------k~~wt~~-~~d~~~~~~fhps 418 (626)
T KOG2106|consen 349 NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-D-H------KLEWTKI-IEDPAECADFHPS 418 (626)
T ss_pred ceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-C-C------ceeEEEE-ecCceeEeeccCc
Confidence 000 001123357889999999999988 899999999999999 2 1 2333322 3467889999998
Q ss_pred CCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceeeeccCe
Q 020480 239 HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLLYKFPF 309 (325)
Q Consensus 239 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~~~~~~ 309 (325)
| .+|.|...|...+.|..+.. +.+++....++++++|+|+|.+ .|+.|+.+.++.+..-..+|..
T Consensus 419 g--~va~Gt~~G~w~V~d~e~~~----lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 419 G--VVAVGTATGRWFVLDTETQD----LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred c--eEEEeeccceEEEEecccce----eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 6 89999999999999999855 4444445899999999999996 7899999999866554444443
No 176
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.51 E-value=2.7e-12 Score=110.52 Aligned_cols=160 Identities=8% Similarity=-0.001 Sum_probs=108.0
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
.+.+...+.+++|+|++ .+++++..++ .+.+|+... ......+. .......++|+|++..+++++..
T Consensus 110 ~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~----------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 110 EIPVGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKT----------YEIVDNVL-VDQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred EeeCCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCC----------CeEEEEEE-cCCCccEEEECCCCCEEEEEcCC
Confidence 33444456889999998 5777777664 567788765 12222222 22345789999999843456667
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecC-------CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 272 (325)
++.|++||++++.. +..+..+ ......++|+|++..++++.+.++.+.+||+++.+. +..+ .+
T Consensus 178 ~~~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~---~~~~-~~ 247 (300)
T TIGR03866 178 GGTVSVIDVATRKV------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV---LDYL-LV 247 (300)
T ss_pred CCEEEEEEcCccee------eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE---EEEE-Ee
Confidence 99999999987632 2222211 112346889999865556666778899999987763 3333 34
Q ss_pred CCCeeEEEeCCCCCc--c-CCCCceEEeeecce
Q 020480 273 QSEVGVSILNASFRL--S-HEDTCTCTHRHSRY 302 (325)
Q Consensus 273 ~~~v~~i~~~p~~~~--~-~~~d~~~~~~~~~~ 302 (325)
...+.+++|+|+|.. + .+.++.+++|+...
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 567999999999984 3 35689999999765
No 177
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.51 E-value=2.4e-13 Score=108.30 Aligned_cols=170 Identities=15% Similarity=0.191 Sum_probs=126.0
Q ss_pred cCCCeeEEEecCC-C-CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 124 HDGEVNRARYMPQ-N-PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 124 h~~~v~~v~~~~~-~-~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
..+.+.+..+... + .-++++|-++|.|.+||+........-....+.......|..+|.++.+.+... .=++|+.+.
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~d 227 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADD 227 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccc
Confidence 4577777775433 2 235677889999999999874221111122233344557999999999988766 467788888
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL 281 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~ 281 (325)
.+..|.+........+ .....-.+..|..+..-|++ .++||++.|+.||||..|+.+ |+..++.|.+.|++++|
T Consensus 228 kl~~~Sl~~s~gslq~--~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~---pLAVLkyHsagvn~vAf 301 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQI--RKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLN---PLAVLKYHSAGVNAVAF 301 (323)
T ss_pred cceeeeeccccCcccc--cceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCC---chhhhhhhhcceeEEEe
Confidence 8999988765332111 12223334568899999997 699999999999999999998 69999999999999999
Q ss_pred CCCCCc--cCCCCceEEeeec
Q 020480 282 NASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 282 ~p~~~~--~~~~d~~~~~~~~ 300 (325)
+|+..+ .++.|+++.+|++
T Consensus 302 spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCCchhhhccCCceEEeeec
Confidence 999554 8899999999986
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.50 E-value=2.2e-13 Score=118.35 Aligned_cols=152 Identities=14% Similarity=0.287 Sum_probs=115.0
Q ss_pred CCCCceEEEEEe--------ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceE
Q 020480 111 CANGKVQIIQQI--------NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY 182 (325)
Q Consensus 111 ~~~~~~~~~~~~--------~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 182 (325)
..++++.++... .|.++|.+-+|+|+| .-|+++++||.|++|+-... ...++.....+|.
T Consensus 82 s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGM-----------LRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 82 SNDGRFVILNKSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGM-----------LRSTVVQNEESIR 149 (737)
T ss_pred cCCceEEEecccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccch-----------HHHHHhhcCceeE
Confidence 356677665433 399999999999999 68889999999999997652 1222344567899
Q ss_pred EEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262 (325)
Q Consensus 183 ~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 262 (325)
+++|.|+.+..+++.+ +.+.|=-+... ..+-.+++|.+-|.++.|+|.. .++++|+.|-..++||.....
T Consensus 150 c~~W~p~S~~vl~c~g--~h~~IKpL~~n------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~- 219 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQG--GHISIKPLAAN------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN- 219 (737)
T ss_pred EEEECCCCCceEEecC--CeEEEeecccc------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcc-
Confidence 9999999986666555 34444444433 2355678999999999999986 799999999999999987654
Q ss_pred CCCeeEeeccCCCeeEEEeCCCCCc
Q 020480 263 SKPVQSVVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 263 ~~~~~~~~~h~~~v~~i~~~p~~~~ 287 (325)
+.....|.-+|++++|+|+..+
T Consensus 220 ---Lf~S~~~ey~ITSva~npd~~~ 241 (737)
T KOG1524|consen 220 ---LFTSAAEEYAITSVAFNPEKDY 241 (737)
T ss_pred ---cccCChhccceeeeeeccccce
Confidence 5555678888888888888443
No 179
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.50 E-value=4.2e-13 Score=122.04 Aligned_cols=169 Identities=16% Similarity=0.130 Sum_probs=136.9
Q ss_pred CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE---ecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---RGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
..+++++.++.| ++.+.|...|.|-+|++.+ +.. ..++ ..|.++|++++....++ .+++++.+|.
T Consensus 449 ~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQS--------Gi~--r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gi 516 (910)
T KOG1539|consen 449 INATAVCVSFCG-NFVFIGYSKGTIDRFNMQS--------GIH--RKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGI 516 (910)
T ss_pred cceEEEEEeccC-ceEEEeccCCeEEEEEccc--------Cee--ecccccCccccCceeEEEecCCCc-eEEEccCcce
Confidence 678899999988 7999999999999999987 322 3334 57999999999998887 8999999999
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~ 282 (325)
++.||..... ++..+. -...+.++..+... .++|.+..|-.|+++|..+.+. +..+.+|+..|++++||
T Consensus 517 lkfw~f~~k~------l~~~l~-l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kv---vR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 517 LKFWDFKKKV------LKKSLR-LGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKV---VREFWGHGNRITDMTFS 585 (910)
T ss_pred EEEEecCCcc------eeeeec-cCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhh---hHHhhccccceeeeEeC
Confidence 9999998762 233333 34567788888775 5889999999999999999884 88889999999999999
Q ss_pred CCCCc--cCCCCceEEeeeccee------eeccCeeEEEeecC
Q 020480 283 ASFRL--SHEDTCTCTHRHSRYL------LYKFPFFVLVFPLF 317 (325)
Q Consensus 283 p~~~~--~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~ 317 (325)
|+|++ +++.|++++.||+..- .-.-|.+++.|...
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn 628 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN 628 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence 99995 8999999999997542 33445555555443
No 180
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.50 E-value=1.7e-12 Score=115.93 Aligned_cols=212 Identities=12% Similarity=0.129 Sum_probs=145.1
Q ss_pred CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE
Q 020480 42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ 121 (325)
Q Consensus 42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (325)
..+.+++.+|+++. ++..-.++..+...|.+|+...- .+....
T Consensus 526 yEv~~l~~s~~gnl----------iASaCKS~~~ehAvI~lw~t~~W---------------------------~~~~~L 568 (764)
T KOG1063|consen 526 YEVYALAISPTGNL----------IASACKSSLKEHAVIRLWNTANW---------------------------LQVQEL 568 (764)
T ss_pred eeEEEEEecCCCCE----------EeehhhhCCccceEEEEEeccch---------------------------hhhhee
Confidence 44888888988752 22222233445556677755311 111135
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
..|.-.|+.++|+|++ ++|++.+.|+++.+|........ .......+.|+.-|++.+|+|++. .|+|+|+|.
T Consensus 569 ~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~------e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK 640 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKD------EFRFACLKAHTRIIWDCSWSPDEK-YFATASRDK 640 (764)
T ss_pred cccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccch------hhhhccccccceEEEEcccCcccc-eeEEecCCc
Confidence 6799999999999999 79999999999999998542110 011223678999999999999998 699999999
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC----cEEEEEecCCcEEEEEccCCCCCCCe---------eE
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE----YLFGSVGDDQYLLIWDLRTPSVSKPV---------QS 268 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~ 268 (325)
+|++|........ .+... ....+...|++++|.|..- .+++.|-..|.|.+|..........+ ..
T Consensus 641 ~VkVW~~~~~~d~-~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~ 718 (764)
T KOG1063|consen 641 KVKVWEEPDLRDK-YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCA 718 (764)
T ss_pred eEEEEeccCchhh-hhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecccccc
Confidence 9999998766311 11111 2345778999999988432 37889999999999995511111011 11
Q ss_pred eeccCCCeeEEEeCCCC------C------ccCCCCceEEeeec
Q 020480 269 VVAHQSEVGVSILNASF------R------LSHEDTCTCTHRHS 300 (325)
Q Consensus 269 ~~~h~~~v~~i~~~p~~------~------~~~~~d~~~~~~~~ 300 (325)
..+|.+.|+.+.|.|.. . .++++|..++++++
T Consensus 719 ~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv 762 (764)
T KOG1063|consen 719 TIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNV 762 (764)
T ss_pred ccChHHhhheeEeccccccccccccceeEEeeecccceeEEeec
Confidence 13567789999999862 1 27888988888764
No 181
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=6e-12 Score=107.58 Aligned_cols=212 Identities=17% Similarity=0.196 Sum_probs=152.6
Q ss_pred HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCC
Q 020480 31 LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFG 110 (325)
Q Consensus 31 ~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (325)
|.+.-..|...-++.+++|.|..+ .++++.+ ++.+.|+++. |+
T Consensus 203 lkDaNa~~ps~~~I~sv~FHp~~p----------lllvaG~-----d~~lrifqvD-----------------Gk----- 245 (514)
T KOG2055|consen 203 LKDANAAHPSHGGITSVQFHPTAP----------LLLVAGL-----DGTLRIFQVD-----------------GK----- 245 (514)
T ss_pred ecccccCCcCcCCceEEEecCCCc----------eEEEecC-----CCcEEEEEec-----------------Cc-----
Confidence 455556666666788899999764 3444433 2467788774 00
Q ss_pred CCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceEEEEecCC
Q 020480 111 CANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKF 189 (325)
Q Consensus 111 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~ 189 (325)
..+.++-+ .--..+|.+.+|.|+|...+++++....++.||+.+ .+..++....++. ..+.....+++
T Consensus 246 -~N~~lqS~--~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~--------ak~~k~~~~~g~e~~~~e~FeVShd 314 (514)
T KOG2055|consen 246 -VNPKLQSI--HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET--------AKVTKLKPPYGVEEKSMERFEVSHD 314 (514)
T ss_pred -cChhheee--eeccCccceeeecCCCceEEEecccceEEEEeeccc--------cccccccCCCCcccchhheeEecCC
Confidence 12222222 224578999999999966899999999999999987 3444444444544 35677888999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (325)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 269 (325)
++ +++..+..|.|.+-...++. .+.+++ -.+.|..++|+.++ ..|++++.+|.|.+||++...+ ++.+
T Consensus 315 ~~-fia~~G~~G~I~lLhakT~e------li~s~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~---~~rf 382 (514)
T KOG2055|consen 315 SN-FIAIAGNNGHIHLLHAKTKE------LITSFK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSC---LHRF 382 (514)
T ss_pred CC-eEEEcccCceEEeehhhhhh------hhheee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcce---EEEE
Confidence 99 89999999999999888763 455555 45779999999887 5777788899999999999875 6666
Q ss_pred eccCCCe--eEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480 270 VAHQSEV--GVSILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 270 ~~h~~~v--~~i~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
.. .+.| ++++.+++|.+ +|+..|.+.+++....
T Consensus 383 ~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 383 VD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred ee-cCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 43 3333 56777788886 8899999999885443
No 182
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=1e-12 Score=114.18 Aligned_cols=120 Identities=23% Similarity=0.380 Sum_probs=99.4
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
-.+.|+..+|+|+| .+||+.+.||.++||++.. ...+..++..-+...+++|+|++. ++++|+.|--|
T Consensus 289 ~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt----------~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLV 356 (636)
T KOG2394|consen 289 GEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDT----------QELLGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLV 356 (636)
T ss_pred ccccccceeEcCCC-ceEEEEecCceEEEeeccH----------HHHHHHHHhhccceEEEEEcCCcc-EEEecCCcceE
Confidence 45699999999988 7999999999999999987 333444555567899999999999 99999999999
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecC---------------------------------------------
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR--------------------------------------------- 238 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--------------------------------------------- 238 (325)
.||.+... +.+..-.+|++.|..|+|.|-
T Consensus 357 tVwSf~er------RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~ 430 (636)
T KOG2394|consen 357 TVWSFEER------RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRI 430 (636)
T ss_pred EEEEeccc------eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccc
Confidence 99999876 446666889999999999831
Q ss_pred --CCcEEEEEecCCcEEEEEccCCC
Q 020480 239 --HEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 239 --~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
-...|.+.+.|-.+++||+....
T Consensus 431 ~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 431 NSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred cceEEEeecccccceEEEEecchhh
Confidence 01357888999999999997543
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=1.6e-11 Score=102.34 Aligned_cols=161 Identities=11% Similarity=0.118 Sum_probs=123.6
Q ss_pred EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceEEEEecCCCCCeEE
Q 020480 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKFKEGHLL 195 (325)
Q Consensus 119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~ 195 (325)
+..+..+..|.+|+++.+ .|+++-.+ .|+|||++. .+.++++. .+...+.++..+..+. +++
T Consensus 81 ICe~~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~----------MklLhTI~t~~~n~~gl~AlS~n~~n~-ylA 145 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYDIKD----------MKLLHTIETTPPNPKGLCALSPNNANC-YLA 145 (391)
T ss_pred EEEEecCCceEEEEEccc---eEEEEEcc-cEEEEeccc----------ceeehhhhccCCCccceEeeccCCCCc-eEE
Confidence 345667889999999874 45555544 599999998 55555553 4555677777777766 444
Q ss_pred E-Ee-CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc-EEEEEccCCCCCCCeeEeecc
Q 020480 196 S-GS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAH 272 (325)
Q Consensus 196 s-~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~h 272 (325)
- ++ ..|.|.|||+... .++..+.+|.+.+.+++|+++| .+|||++..|+ ||||.+..+.. +..+..-
T Consensus 146 yp~s~t~GdV~l~d~~nl------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~k---l~eFRRG 215 (391)
T KOG2110|consen 146 YPGSTTSGDVVLFDTINL------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQK---LYEFRRG 215 (391)
T ss_pred ecCCCCCceEEEEEcccc------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccE---eeeeeCC
Confidence 3 33 4589999999876 5678889999999999999998 79999999998 79999998884 6666432
Q ss_pred --CCCeeEEEeCCCCCc--cCCCCceEEeeecceee
Q 020480 273 --QSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 273 --~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
...|.+++|+|++.+ ..|...++.++.+....
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 346899999999997 56777889888776554
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=4.4e-13 Score=117.82 Aligned_cols=221 Identities=20% Similarity=0.269 Sum_probs=157.8
Q ss_pred HHhhhHhcCh-hHH-HHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480 20 EYKIWKKNTP-FLY-DLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR 97 (325)
Q Consensus 20 ~~~iw~~~~~-~~y-~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 97 (325)
.+-.|.+... +++ .++....+.=++.++.|...+.. +.+. ...+..-.+.|.++.--
T Consensus 498 ~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY----------latV--~~~~~~~~VliHQLSK~--------- 556 (733)
T KOG0650|consen 498 AVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY----------LATV--MPDSGNKSVLIHQLSKR--------- 556 (733)
T ss_pred cceeechhhhhhhccceEEEEecCCccceeeeecCCce----------EEEe--ccCCCcceEEEEecccc---------
Confidence 4557877532 233 23344444556788888887752 2221 22334446677766411
Q ss_pred CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480 98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH 177 (325)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h 177 (325)
+.+ .-.....+.|.++.|+|..+ +|++++ ...|++||+.. ...+..+...
T Consensus 557 -----------------~sQ-~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~k----------qelvKkL~tg 606 (733)
T KOG0650|consen 557 -----------------KSQ-SPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSK----------QELVKKLLTG 606 (733)
T ss_pred -----------------ccc-CchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhH----------HHHHHHHhcC
Confidence 101 11123567888999999885 555544 45899999987 3445556666
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~ 257 (325)
...|.+++.+|.|. .|+.|+.|+.+..+|+.... ++.+.+..|...+.+|+||+.= .+|++|+.||++.||.-
T Consensus 607 ~kwiS~msihp~GD-nli~gs~d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 607 SKWISSMSIHPNGD-NLILGSYDKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHG 679 (733)
T ss_pred CeeeeeeeecCCCC-eEEEecCCCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEee
Confidence 77899999999999 69999999999999998765 3677788899999999999974 69999999999999965
Q ss_pred cC------CCCCCCeeEeeccCCC----eeEEEeCCCCCc--cCCCCceEEee
Q 020480 258 RT------PSVSKPVQSVVAHQSE----VGVSILNASFRL--SHEDTCTCTHR 298 (325)
Q Consensus 258 ~~------~~~~~~~~~~~~h~~~----v~~i~~~p~~~~--~~~~d~~~~~~ 298 (325)
+- .....|+..+.+|... |..+.|+|.... ++|.|+++++|
T Consensus 680 ~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 680 MVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 43 2223567788888765 889999998874 89999999987
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.6e-12 Score=109.04 Aligned_cols=170 Identities=13% Similarity=0.093 Sum_probs=129.4
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
..+|.+.|+++.|+..+ .+||+|+.|..+++|.+...... ...+|+.... .|.+.|.+++|...+. ++++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~----k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~ 125 (609)
T KOG4227|consen 52 VREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVR----KTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGER 125 (609)
T ss_pred hhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhh----cCCCCceeccCccccceEEEEEccCCe-eEecCCC
Confidence 45799999999999987 79999999999999998753221 1235555443 4668999999998877 8999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeee--cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
+++|.+-|+.+... +..+. ...+.|+.+.-+|.. +.|++.+.++.|.+||.|.....-.............
T Consensus 126 ~~~VI~HDiEt~qs------i~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 126 WGTVIKHDIETKQS------IYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred cceeEeeeccccee------eeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 99999999998632 33332 234589999999985 8999999999999999997663111222233456778
Q ss_pred EEEeCCCCC---ccCCCCceEEeeeccee
Q 020480 278 VSILNASFR---LSHEDTCTCTHRHSRYL 303 (325)
Q Consensus 278 ~i~~~p~~~---~~~~~d~~~~~~~~~~~ 303 (325)
++.|+|-.. ++.+..+...+|+.|..
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccc
Confidence 899999654 26677777888887764
No 186
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=7.4e-13 Score=116.44 Aligned_cols=251 Identities=14% Similarity=0.141 Sum_probs=163.1
Q ss_pred hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCC----
Q 020480 14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL---- 89 (325)
Q Consensus 14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---- 89 (325)
+...+.++|||...+..+...+.. .--+.+++|.|..... .++++.. . .+.|..-.+..
T Consensus 417 sGsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~--------vLAvA~~-~-----~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 417 SGSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLC--------VLAVAVG-E-----CVLIVNPIFGDRLEV 479 (733)
T ss_pred ecCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCce--------eEEEEec-C-----ceEEeCccccchhhh
Confidence 344677899999999866544433 3357899999987643 2222221 1 11111111110
Q ss_pred ---CCCCcccCCCCcccCCCCCCCCC---CCceEEEEEeccCCCeeEEEecCCCCcEEEEEecC---CeEEEEeCCCCCC
Q 020480 90 ---DDSENDARHYDDDRSDFGGFGCA---NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPS 160 (325)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~d---g~v~vwd~~~~~~ 160 (325)
.+..............+..|... .........+.|...|..+.|+..| .+||+...+ ..|.|+++..
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK--- 555 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSK--- 555 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccc---
Confidence 00000000001111112223222 1111233467899999999999999 688876543 4788999876
Q ss_pred CCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC
Q 020480 161 KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240 (325)
Q Consensus 161 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 240 (325)
. ....-|.-..+.|.++.|+|... +|+.++. ..|+|||+... ..+..+......|..++.||.|.
T Consensus 556 -----~--~sQ~PF~kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kq------elvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 556 -----R--KSQSPFRKSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQ------ELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred -----c--cccCchhhcCCceeEEEecCCCc-eEEEEec-cceEEEehhHH------HHHHHHhcCCeeeeeeeecCCCC
Confidence 2 11223444456789999999998 5666664 68999999865 23444445566799999999886
Q ss_pred cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
+ |+.|+.|+.++.||+.-... |.+.+..|...+++|+|++.-.+ +|++|+++.++....+
T Consensus 621 n-li~gs~d~k~~WfDldlssk--Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 621 N-LILGSYDKKMCWFDLDLSSK--PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY 682 (733)
T ss_pred e-EEEecCCCeeEEEEcccCcc--hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence 5 45899999999999987764 78888999999999999998776 8899999999765443
No 187
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=8.9e-12 Score=103.00 Aligned_cols=205 Identities=16% Similarity=0.287 Sum_probs=142.9
Q ss_pred hhhhhhhhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEEC
Q 020480 8 MRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQL 87 (325)
Q Consensus 8 ~~~~~~~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 87 (325)
.|++++....+.++|||++.+...|..-..|.++.||..+.+.+.. .++++|-.... +.++.+
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~----------~~L~vg~~ngt-------vtefs~ 97 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES----------RRLYVGQDNGT-------VTEFAL 97 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc----------eEEEEEEecce-------EEEEEh
Confidence 4566778889999999999999999999999999999999998865 45666654331 233332
Q ss_pred CCCCCCcccCCCCcccCCCCCCCCCCCceEEEE-EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCC-------
Q 020480 88 PLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ-QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP------- 159 (325)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~------- 159 (325)
.. .-.++...+ ...|...|.++-|+... ..+++.+.|..+.---.+...
T Consensus 98 se----------------------dfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 98 SE----------------------DFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred hh----------------------hhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe
Confidence 20 011222222 23577777777777654 466666665544321111100
Q ss_pred ----CCCC--------------------CCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 020480 160 ----SKPP--------------------LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK 215 (325)
Q Consensus 160 ----~~~~--------------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~ 215 (325)
..+. ......++.++.+|.+.+.+++|.+... +|++|..|..+.+||+...+.
T Consensus 155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g-- 231 (404)
T KOG1409|consen 155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKG-- 231 (404)
T ss_pred eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcc--
Confidence 0000 0123455677889999999999999877 999999999999999976543
Q ss_pred cccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 216 SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 216 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
......+|...|..++..+.- ..+.+++.||.|-+||+..
T Consensus 232 ---~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 232 ---TAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ---eeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccc
Confidence 345678899999999887654 6788999999999999975
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=2.2e-11 Score=97.72 Aligned_cols=133 Identities=17% Similarity=0.283 Sum_probs=89.3
Q ss_pred EEEecCCCCcEEEEEe---------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEE--E
Q 020480 130 RARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLS--G 197 (325)
Q Consensus 130 ~v~~~~~~~~~la~g~---------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s--~ 197 (325)
.+.|+++|..+++... .-|...+|.++.. ..+...+. ...++|.+++|+|++. .|+. |
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~---------~~~~~~i~l~~~~~I~~~~WsP~g~-~favi~g 79 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK---------NIPVESIELKKEGPIHDVAWSPNGN-EFAVIYG 79 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC---------CCccceeeccCCCceEEEEECcCCC-EEEEEEc
Confidence 5788898855554443 1234556666431 12333333 2345799999999998 5443 4
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec---CCcEEEEEccCCCCCCCeeEeeccCC
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVAHQS 274 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~ 274 (325)
..++.|.+||++. ..+..+. ...++.+.|+|+| +++++|+. .|.|.+||++..+. +.... | .
T Consensus 80 ~~~~~v~lyd~~~-------~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~---i~~~~-~-~ 144 (194)
T PF08662_consen 80 SMPAKVTLYDVKG-------KKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKK---ISTFE-H-S 144 (194)
T ss_pred cCCcccEEEcCcc-------cEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEE---eeccc-c-C
Confidence 4678999999973 3444443 4678899999998 57777764 46799999997663 55443 3 3
Q ss_pred CeeEEEeCCCCCc
Q 020480 275 EVGVSILNASFRL 287 (325)
Q Consensus 275 ~v~~i~~~p~~~~ 287 (325)
.++.++|+|+|++
T Consensus 145 ~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 145 DATDVEWSPDGRY 157 (194)
T ss_pred cEEEEEEcCCCCE
Confidence 4789999999995
No 189
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=1e-10 Score=93.84 Aligned_cols=116 Identities=16% Similarity=0.380 Sum_probs=83.7
Q ss_pred eccCCCeeEEEecCCCCcEEEE-EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-
Q 020480 122 INHDGEVNRARYMPQNPFLIAT-KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD- 199 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~-g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~- 199 (325)
+...++|.+++|+|++..++++ |..++.|.+||++. .++..+. ...+..+.|+|+|+ ++++|+.
T Consensus 56 l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----------~~i~~~~--~~~~n~i~wsP~G~-~l~~~g~~ 121 (194)
T PF08662_consen 56 LKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----------KKIFSFG--TQPRNTISWSPDGR-FLVLAGFG 121 (194)
T ss_pred ccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----------cEeEeec--CCCceEEEECCCCC-EEEEEEcc
Confidence 4456679999999998543333 44577999999964 4455553 45778999999999 7777764
Q ss_pred --CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe------cCCcEEEEEccCC
Q 020480 200 --DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTP 260 (325)
Q Consensus 200 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~------~dg~i~iwd~~~~ 260 (325)
.|.|.+||++.. ..+.... | ..+..++|+|+| .+|+++. .|..++||+....
T Consensus 122 n~~G~l~~wd~~~~------~~i~~~~-~-~~~t~~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 122 NLNGDLEFWDVRKK------KKISTFE-H-SDATDVEWSPDG-RYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCCcEEEEEECCCC------EEeeccc-c-CcEEEEEEcCCC-CEEEEEEeccceeccccEEEEEecCe
Confidence 467999999965 3344333 3 347899999998 4666665 3788999998543
No 190
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.41 E-value=6.4e-11 Score=101.90 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=109.1
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
+.+...+..++|+|++..++++++.++.|++||... ......+..+. .+..++|+|++..++++++.++
T Consensus 27 ~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~----------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~ 95 (300)
T TIGR03866 27 FPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT----------GEVIGTLPSGP-DPELFALHPNGKILYIANEDDN 95 (300)
T ss_pred EECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC----------CcEEEeccCCC-CccEEEECCCCCEEEEEcCCCC
Confidence 343445778999999854557778899999999876 22233344433 3567899999984445566789
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC-cEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-YLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
.+++||++.. ..+..+.. ...+.+++|+|++ .++++++.++ .+.+||.++.+. +.... ....+.+++
T Consensus 96 ~l~~~d~~~~------~~~~~~~~-~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~---~~~~~-~~~~~~~~~ 163 (300)
T TIGR03866 96 LVTVIDIETR------KVLAEIPV-GVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEI---VDNVL-VDQRPRFAE 163 (300)
T ss_pred eEEEEECCCC------eEEeEeeC-CCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeE---EEEEE-cCCCccEEE
Confidence 9999999875 23444432 2346789999987 5777777664 577889887653 33332 234567899
Q ss_pred eCCCCCc---cCCCCceEEeeecce
Q 020480 281 LNASFRL---SHEDTCTCTHRHSRY 302 (325)
Q Consensus 281 ~~p~~~~---~~~~d~~~~~~~~~~ 302 (325)
|+|++.. ++..++.+.+|+...
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 9999983 344588999998754
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.40 E-value=2.4e-13 Score=123.67 Aligned_cols=163 Identities=19% Similarity=0.245 Sum_probs=128.1
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
..+|-.+|.|+.|...| .++++|+.|..|+||...+ ...+..+.||.+.++.++.+..+. ++++++.|
T Consensus 186 LlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et----------~~~lAs~rGhs~ditdlavs~~n~-~iaaaS~D 253 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMET----------ARCLASCRGHSGDITDLAVSSNNT-MIAAASND 253 (1113)
T ss_pred HHhhhhheeeeeecccc-ceEeecCccceeeeeeccc----------hhhhccCCCCccccchhccchhhh-hhhhcccC
Confidence 34699999999999999 7999999999999999776 344778899999999999998877 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVS 279 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i 279 (325)
..|++|-+..+ .++..+.+|++.|++++|+|-. +.+.||++++||.|-.....+-.-. .....-+.++
T Consensus 254 ~vIrvWrl~~~------~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 254 KVIRVWRLPDG------APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred ceEEEEecCCC------chHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeee
Confidence 99999999987 5678889999999999999853 7889999999999921110000000 1123456677
Q ss_pred EeCCCCC--ccCCCCceEEeeecceeeec
Q 020480 280 ILNASFR--LSHEDTCTCTHRHSRYLLYK 306 (325)
Q Consensus 280 ~~~p~~~--~~~~~d~~~~~~~~~~~~~~ 306 (325)
.|..++. .+++.|+..+.|......|+
T Consensus 323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 323 LFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred eccccccccccccCCcccccchhhHhhhh
Confidence 7776655 37888888888766555544
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.1e-11 Score=108.29 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=108.5
Q ss_pred eEEEEEeccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480 116 VQIIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (325)
Q Consensus 116 ~~~~~~~~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 194 (325)
+.....-+|...|.++.|-|. +..++++|..|..|++||+......-...+...+.+.+..|+..|..++-.|++++.+
T Consensus 84 llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 84 LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTF 163 (758)
T ss_pred eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceE
Confidence 333445679999999999995 4468999999999999999853222111233455666778999999999999998899
Q ss_pred EEEeCCCcEEEEeCCCCCCCCc----ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 195 LSGSDDAQICLWDINAAPKNKS----LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
.+++.||+|+-+|++....... ...+..+...--...++..+|..+.+||.|+.|...++||.|.
T Consensus 164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 9999999999999998543210 0111222223345678899999999999999999999999654
No 193
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.6e-12 Score=112.30 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=109.6
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
....|...|..+.|.|.. ..|++|+.||.+.+|++... ........+++.++.+|.++|.+++..+++. .+++|+.
T Consensus 289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~--~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKA--KKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGI 364 (577)
T ss_pred eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhccc--CCccccceeeeEEEecccCceEEEEecCCce-EEEeecc
Confidence 456799999999999987 48999999999999999431 1111245688999999999999999999998 8999999
Q ss_pred CCcEEEEeCCCCCCC----CcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 200 DAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 200 dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
||+|+.|++-..... ........+.+|...|+.+++|+.. ..|++|+.||++|+|+.....
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcC
Confidence 999999976522111 1112355678999999999999976 568899999999999876543
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=6.7e-11 Score=98.70 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=97.2
Q ss_pred ccCCCeeEEEecCCCCcEEEE--EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 123 NHDGEVNRARYMPQNPFLIAT--KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~--g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
.+...+.++.+++.+ .++|- ....|.|.+||+.+ .+++..+..|.+.+-+++|+++|. +|||+|..
T Consensus 127 ~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~n----------l~~v~~I~aH~~~lAalafs~~G~-llATASeK 194 (391)
T KOG2110|consen 127 PNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTIN----------LQPVNTINAHKGPLAALAFSPDGT-LLATASEK 194 (391)
T ss_pred CCccceEeeccCCCC-ceEEecCCCCCceEEEEEccc----------ceeeeEEEecCCceeEEEECCCCC-EEEEeccC
Confidence 355667777777766 56664 34578999999987 678888999999999999999999 99999999
Q ss_pred Cc-EEEEeCCCCCCCCcccceEeeecC--CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 201 AQ-ICLWDINAAPKNKSLEAMQIFKVH--EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 201 g~-i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
|+ |||+.+..+.+ +..|+.. ...|++++|+|++ .+|++.|..++|++|.+....
T Consensus 195 GTVIRVf~v~~G~k------l~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 195 GTVIRVFSVPEGQK------LYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ceEEEEEEcCCccE------eeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccc
Confidence 97 79999988844 4455432 3468999999997 589899999999999987643
No 195
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.36 E-value=1.3e-10 Score=103.88 Aligned_cols=164 Identities=23% Similarity=0.308 Sum_probs=128.3
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEec-CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 196 (325)
......|...|..+.|+|.+ ..+++++. ++.+++|+... ...+..+.+|...+.+++|+|++...+++
T Consensus 148 ~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 148 IRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRT----------GKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCC----------CceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 34456799999999999998 47777775 99999999986 34566777899999999999988734555
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceE-eeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480 197 GSDDAQICLWDINAAPKNKSLEAMQ-IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
++.|+.|++||...+ .... .+..|...+ ...|+|++ .++++++.|+.+++|+++.... .+..+..|...
T Consensus 217 ~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~ 286 (466)
T COG2319 217 GSSDGTIRLWDLSTG------KLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSS 286 (466)
T ss_pred ecCCCcEEEEECCCC------cEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc--EEEEEecCCcc
Confidence 599999999988743 2344 577777765 44899987 6888999999999999997764 24444678899
Q ss_pred eeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 276 VGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 276 v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
+.++.|+|++.. +++.|+.+.+|+...
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLET 315 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence 999999996653 566677788886643
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.36 E-value=1.5e-11 Score=109.75 Aligned_cols=251 Identities=9% Similarity=0.064 Sum_probs=171.2
Q ss_pred HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCC----CCCCeEEEEEEECCCCCCC
Q 020480 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE----NEPNYLMLAQVQLPLDDSE 93 (325)
Q Consensus 18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~~~~~~~~~~~ 93 (325)
+.++-+++.|.+.+.+.+..|+.. +.+|+|+.++.+.+...-.-..+++..+-.+ ++.+.|.-+.++ |-...-
T Consensus 32 g~rlliyD~ndG~llqtLKgHKDt--VycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFN-P~~h~L 108 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTLLQPLKGHKDT--VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFN-PITHQL 108 (1081)
T ss_pred CCEEEEEeCCCcccccccccccce--EEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecC-chHHHh
Confidence 456788999999999999999998 8999999999887655444445555554432 455556555554 321111
Q ss_pred cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480 94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR 173 (325)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 173 (325)
. ++.- .++..|...... +........|.+++|..+| .+++.|-.+|+|.+-+.... ....+..
T Consensus 109 a--sCsL---sdFglWS~~qK~---V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gE--------ek~~I~R 171 (1081)
T KOG1538|consen 109 A--SCSL---SDFGLWSPEQKS---VSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGE--------EKVKIER 171 (1081)
T ss_pred h--hcch---hhccccChhhhh---HHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCC--------cceEEeC
Confidence 1 1111 123344333322 2234455788999999999 79999999999999876541 1111111
Q ss_pred EecCCCceEEEEecCCCC----CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC
Q 020480 174 LRGHSTEGYGLSWSKFKE----GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (325)
Q Consensus 174 ~~~h~~~v~~l~~~p~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d 249 (325)
-.|..++|++++|+|... ..++......++..+.+.... +..-+.-.-...|+++.|+|. ++..|+.|
T Consensus 172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-------Igk~r~L~FdP~CisYf~NGE-y~LiGGsd 243 (1081)
T KOG1538|consen 172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-------IGKDRALNFDPCCISYFTNGE-YILLGGSD 243 (1081)
T ss_pred CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-------ecccccCCCCchhheeccCCc-EEEEccCC
Confidence 125678999999999642 368888888888888876431 111122334567899999984 77899999
Q ss_pred CcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 250 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
+.+++|--..-. +-++.....+|++++..|+++. .|..||++-.+++
T Consensus 244 k~L~~fTR~Gvr----LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 244 KQLSLFTRDGVR----LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CceEEEeecCeE----EeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 999999644333 5565556789999999999985 7889999988764
No 197
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.35 E-value=4.8e-13 Score=121.71 Aligned_cols=125 Identities=22% Similarity=0.388 Sum_probs=110.7
Q ss_pred cEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC
Q 020480 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ 250 (325)
Q Consensus 171 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg 250 (325)
+..+.+|..+|+|+.|...|. .+++|+.|..++||...+. .++....+|++.|+.++.+..+ .++|+++.|.
T Consensus 183 ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~------~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~ 254 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETA------RCLASCRGHSGDITDLAVSSNN-TMIAAASNDK 254 (1113)
T ss_pred HHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccch------hhhccCCCCccccchhccchhh-hhhhhcccCc
Confidence 445678999999999999998 8999999999999998877 5688889999999999998875 6899999999
Q ss_pred cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecceeeeccC
Q 020480 251 YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLLYKFP 308 (325)
Q Consensus 251 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~~~~~~~ 308 (325)
.|++|.++.+. |+..+.+|++.|++|+|+|.. +.+.|++|++||.+...-.|+
T Consensus 255 vIrvWrl~~~~---pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~ 307 (1113)
T KOG0644|consen 255 VIRVWRLPDGA---PVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYV 307 (1113)
T ss_pred eEEEEecCCCc---hHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccC
Confidence 99999999998 699999999999999999976 677999999999984444443
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=2.2e-12 Score=110.36 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=129.1
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
.....|+.+.|-|.. .+|++++..|.++.-|+.. + +.+..+..-.+.+..++-+|-+. .+-+|...|+
T Consensus 207 k~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~--------G--klVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGt 274 (545)
T KOG1272|consen 207 KRHIRVARLEFLPYH-FLLVAASEAGFLKYQDVST--------G--KLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGT 274 (545)
T ss_pred hhcCchhhhcccchh-heeeecccCCceEEEeech--------h--hhhHHHHccCCccchhhcCCccc-eEEEcCCCce
Confidence 344678999999987 7999999999999999987 3 33555666677888999999888 8999999999
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~ 282 (325)
|.+|..... .++..+.+|.++|.++++.+.| +++||.|.|..++|||+|+... +.++.. .-+...++||
T Consensus 275 VSlWSP~sk------ePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~q---l~t~~t-p~~a~~ls~S 343 (545)
T KOG1272|consen 275 VSLWSPNSK------EPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQ---LHTYRT-PHPASNLSLS 343 (545)
T ss_pred EEecCCCCc------chHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeeccccc---cceeec-CCCccccccc
Confidence 999998876 4667778899999999999987 7999999999999999999874 555543 4577889999
Q ss_pred CCCCccCCCCceEEeeec
Q 020480 283 ASFRLSHEDTCTCTHRHS 300 (325)
Q Consensus 283 p~~~~~~~~d~~~~~~~~ 300 (325)
..|.+..|.-..+.+|.-
T Consensus 344 qkglLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 344 QKGLLALSYGDHVQIWKD 361 (545)
T ss_pred cccceeeecCCeeeeehh
Confidence 999987777777777743
No 199
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=5.3e-12 Score=110.70 Aligned_cols=181 Identities=17% Similarity=0.186 Sum_probs=129.2
Q ss_pred CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC------------------------------
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP------------------------------ 163 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~------------------------------ 163 (325)
.++++++.+.|+...+.|..+|+|..++|+|.....|++||+.....+..
T Consensus 40 ~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 40 QRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred HHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence 35677788899999999999999998999999999999999986432211
Q ss_pred -------------C-----------------CCC-----------CCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 164 -------------L-----------------DGA-----------CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 164 -------------~-----------------~~~-----------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
+ .+. ..-+..+....+.+.++..++... +|++|+.+|.
T Consensus 120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~ 198 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGV 198 (703)
T ss_pred ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc-eEEecccCce
Confidence 0 000 000111122335778888888877 8999999999
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCc-----cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCe
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEG-----VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEV 276 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v 276 (325)
|-.||.+.......+........|.+ .|+++.|+-+| -.+++|+..|.+.|||+|+.+. +..- ++..-+|
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~pi 274 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKP---LLVKDHGYELPI 274 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCc---eeecccCCccce
Confidence 99999998765444333333333443 49999999775 7899999999999999999884 4432 3445688
Q ss_pred eEEEeCCCC---CccCCCCceEEeee
Q 020480 277 GVSILNASF---RLSHEDTCTCTHRH 299 (325)
Q Consensus 277 ~~i~~~p~~---~~~~~~d~~~~~~~ 299 (325)
..+.|.+.+ .+...+...+++|+
T Consensus 275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd 300 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSMDKRILKIWD 300 (703)
T ss_pred eeecccccCCCceEEecchHHhhhcc
Confidence 999997762 23444556677775
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=3.4e-10 Score=106.03 Aligned_cols=173 Identities=16% Similarity=0.113 Sum_probs=121.0
Q ss_pred CCeeEEEecC-CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE---e----cCCCceEEEEecCCCCCeEEEE
Q 020480 126 GEVNRARYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---R----GHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 126 ~~v~~v~~~~-~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---~----~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
..|+.+.+-. ++..++.+|+.||.|+||+-..... +..+.+... . +-.+.-.-++|..... +|+++
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~-----~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~t 1183 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW-----KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVT 1183 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEeccccccc-----CCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEec
Confidence 4566766654 3446899999999999998644110 011111111 1 1222335678888776 67777
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC--
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE-- 275 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-- 275 (325)
+.-..|+|||....... .....+.+..|++++-+-.+.+++++|..||+|++||.|......++.....|...
T Consensus 1184 Gd~r~IRIWDa~~E~~~-----~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQVV-----ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred CCeeEEEEEecccceeE-----eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 76899999999865321 11223345667777766555689999999999999999988766678888889887
Q ss_pred eeEEEeCCCCC---ccCCCCceEEeeecce-eeeccCe
Q 020480 276 VGVSILNASFR---LSHEDTCTCTHRHSRY-LLYKFPF 309 (325)
Q Consensus 276 v~~i~~~p~~~---~~~~~d~~~~~~~~~~-~~~~~~~ 309 (325)
|..+.+.++|. ++|+.+|.+++||+|. ....|+.
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 99999998764 4999999999999999 4444443
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=1.2e-10 Score=95.42 Aligned_cols=107 Identities=14% Similarity=0.160 Sum_probs=86.7
Q ss_pred cEEEE-EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc-EEEEeCCCCCCCCc
Q 020480 139 FLIAT-KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ-ICLWDINAAPKNKS 216 (325)
Q Consensus 139 ~~la~-g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~ 216 (325)
.+||. |-.-|.|.|-|+.. ....+...+.+|.+.|.+++.+.+|. ++||+|..|+ |||||...+..
T Consensus 149 ~~LafPg~k~GqvQi~dL~~--------~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~--- 216 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLAS--------TKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTL--- 216 (346)
T ss_pred eEEEcCCCccceEEEEEhhh--------cCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcE---
Confidence 34544 45669999999987 22334567889999999999999999 9999999998 89999999843
Q ss_pred ccceEeeec--CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 217 LEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 217 ~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
+..++. ....|++++|+|+. .+||++|+.|+|+||.++...
T Consensus 217 ---l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 217 ---LQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ---eeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCC
Confidence 555543 34579999999986 699999999999999998754
No 202
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.32 E-value=4.3e-11 Score=97.07 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=111.9
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (325)
Q Consensus 128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd 207 (325)
..++.|++.+ ..++++..+|.+.+-+... ...+.+...+.|.-+++...|+...++++++|+.|+.+.-||
T Consensus 124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~--------~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 124 ALSLDISTSG-TKIFVSDSRGSISGVYETE--------MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred eeEEEeeccC-ceEEEEcCCCcEEEEecce--------eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 3467788877 5688888899998655544 234445678899999999999999888999999999999999
Q ss_pred CCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480 208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR 286 (325)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 286 (325)
+|.... ...+..+.|...|.++.-+|..+.++++|+.|-.|++||.|+... |+..-. -.+.|+.+.++|.-.
T Consensus 195 ~R~p~~----~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k--Pl~~~~-v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 195 IRIPKT----FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK--PLFKAK-VGGGVWRIKHHPEIF 266 (339)
T ss_pred ecCCcc----eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC--ccccCc-cccceEEEEecchhh
Confidence 995432 123335678899999999988789999999999999999997654 555432 347899999998543
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=5.6e-11 Score=111.14 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=119.3
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc--eEEEEecCCCCCeEEEEeCCC
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE--GYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~~l~s~s~dg 201 (325)
....|+++.-+-.+.+++|+|..||.|++||.+..+. ...+...+.|+.. |..+.+.+.|-..|++|+.+|
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCc-------cccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 3455677666655558999999999999999987322 2456778889887 999999998877899999999
Q ss_pred cEEEEeCCCCCCCCcccceEeeecC---CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec-------
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVH---EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA------- 271 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------- 271 (325)
.|++||+|...+.. .. ....| .+..+++..|+.. .++|+|+. +.|+||++.... +..++.
T Consensus 1280 ~I~~~DlR~~~~e~---~~-~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~----l~~~k~n~~F~~q 1349 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKET---FL-TIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQ----LNIIKYNPGFMGQ 1349 (1387)
T ss_pred eEEEEecccCcccc---cc-eeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhh----hcccccCcccccC
Confidence 99999999853211 11 22222 2358999999976 58999988 999999997654 222221
Q ss_pred cCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 272 HQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 272 h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
-.+.+.|++|+|...+ .|+.|.++.++..
T Consensus 1350 ~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 2356799999998775 6778888887643
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=3.9e-10 Score=92.53 Aligned_cols=164 Identities=16% Similarity=0.215 Sum_probs=117.1
Q ss_pred EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--CCCceEEEEecCCCCCeE
Q 020480 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGHL 194 (325)
Q Consensus 117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l 194 (325)
..+..+...++|.++.+.++ .|++. ..+.|+||.....+ +.++.+.. ....+.+++-..... +|
T Consensus 86 ~~i~el~f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~---------k~l~~~et~~NPkGlC~~~~~~~k~-~L 151 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNP---------KLLHVIETRSNPKGLCSLCPTSNKS-LL 151 (346)
T ss_pred cEEEEEEeccceeeEEEcCC---eEEEE-ecCeEEEEEcCCCh---------hheeeeecccCCCceEeecCCCCce-EE
Confidence 44557788899999999985 34443 46699999998532 22232321 122233333333333 33
Q ss_pred EE-EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc-EEEEEccCCCCCCCeeEeec-
Q 020480 195 LS-GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPVQSVVA- 271 (325)
Q Consensus 195 ~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~- 271 (325)
|. |-.-|.|+|-|+...... +...+.+|.+.|.+++.+-+| .++||+|..|+ |||||.+++.. +..+..
T Consensus 152 afPg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~---l~E~RRG 223 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTL---LQELRRG 223 (346)
T ss_pred EcCCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcE---eeeeecC
Confidence 33 456699999999876431 345678999999999999987 79999999998 89999999984 776643
Q ss_pred -cCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 272 -HQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 272 -h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
....|.+|+|+|+..+ .+|+-+|+.++.++.
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 3467999999999996 677888999987655
No 205
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1e-11 Score=101.52 Aligned_cols=94 Identities=15% Similarity=0.275 Sum_probs=82.3
Q ss_pred eEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (325)
Q Consensus 181 v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~ 260 (325)
..++.|++.|. +||+|..||.|-|||+.+.. .-+.+.+|..+|++++|+++| +.|+|++.|..|.+||+..+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~------iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR------IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccc------hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCC
Confidence 67999999999 89999999999999999863 455678999999999999998 79999999999999999999
Q ss_pred CCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480 261 SVSKPVQSVVAHQSEVGVSILNASFR 286 (325)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~i~~~p~~~ 286 (325)
.. ++.+. ..++|+...|+|..+
T Consensus 98 s~---l~rir-f~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 98 SP---LKRIR-FDSPVWGAQWHPRKR 119 (405)
T ss_pred Cc---eeEEE-ccCccceeeeccccC
Confidence 84 66654 578888888888654
No 206
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=5.8e-11 Score=99.72 Aligned_cols=159 Identities=11% Similarity=0.077 Sum_probs=128.3
Q ss_pred CCCeeEEEecCCCCcEEEEEecC--CeEEEEeCCCCCCCCCCCCCCCCcEEEe-------c--CCCceEEEEecCC--CC
Q 020480 125 DGEVNRARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLR-------G--HSTEGYGLSWSKF--KE 191 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~-------~--h~~~v~~l~~~p~--~~ 191 (325)
...+..+.-++..+.++|+|+.. ..+.+||+... +.++.-. + -.-.++++.|-+. ..
T Consensus 148 g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~----------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~ 217 (412)
T KOG3881|consen 148 GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS----------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY 217 (412)
T ss_pred CCceeeeccCCCCCceEecCchhcccceeeeecccc----------eeeeeccCCCCccccceeeeeeccceecCCCCCc
Confidence 35677778888877899999999 89999999862 1121111 0 1124678888776 55
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec
Q 020480 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA 271 (325)
Q Consensus 192 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 271 (325)
.|++++.-+.+++||.+.++ .|+..+.-....+.++...|.+ +++++|...|.+..||+|.++. ....+.+
T Consensus 218 -~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl--~g~~~kg 288 (412)
T KOG3881|consen 218 -KFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKL--LGCGLKG 288 (412)
T ss_pred -eEEEEecceeEEEecCcccC-----cceeEeccccCcceeeeecCCC-cEEEEecccchhheecccCcee--eccccCC
Confidence 89999999999999999765 4677777778899999999987 7899999999999999999985 3445788
Q ss_pred cCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 272 HQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 272 h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
..+.|++|..+|.+++ ++|.|..+|++|+..
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 8999999999999885 899999999998765
No 207
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.31 E-value=6e-10 Score=97.66 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=106.5
Q ss_pred ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480 115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (325)
Q Consensus 115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 194 (325)
.+.........+....+.|+|++..++++.-.++.|.+|++..... ....+..+. +....+.++++|++..++
T Consensus 69 ~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~------~~~~~~~~~-~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 69 ALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI------PVAPIQIIE-GLEGCHSANIDPDNRTLW 141 (330)
T ss_pred ceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC------CCCceeecc-CCCcccEeEeCCCCCEEE
Confidence 4444444455556778999999954444444589999999864110 011222222 334567889999998555
Q ss_pred EEEeCCCcEEEEeCCCCCCCCc-ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC-CCCCeeEeecc
Q 020480 195 LSGSDDAQICLWDINAAPKNKS-LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS-VSKPVQSVVAH 272 (325)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~h 272 (325)
++...++.|.+||+........ ........ .......++|+|++..++++...++.|.+||+.... ..+.+..+..+
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 220 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM 220 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence 6666789999999976321100 00001111 123467899999985444554559999999998421 11123333221
Q ss_pred ------CCCeeEEEeCCCCCc---cCCCCceEEeeec
Q 020480 273 ------QSEVGVSILNASFRL---SHEDTCTCTHRHS 300 (325)
Q Consensus 273 ------~~~v~~i~~~p~~~~---~~~~d~~~~~~~~ 300 (325)
......+.|+|+|++ +...++++.+|++
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 122346899999984 3345678888865
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=2.9e-10 Score=94.84 Aligned_cols=220 Identities=14% Similarity=0.209 Sum_probs=130.6
Q ss_pred hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA 96 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 96 (325)
.|..+||++++.-.- ....+...=.+.+++|-|..-. .+++|-.. -|.+|..+-+....- .
T Consensus 118 nddvVriy~ksst~p--t~Lks~sQrnvtclawRPlsas---------elavgCr~------gIciW~~s~tln~~r-~- 178 (445)
T KOG2139|consen 118 NDDVVRIYDKSSTCP--TKLKSVSQRNVTCLAWRPLSAS---------ELAVGCRA------GICIWSDSRTLNANR-N- 178 (445)
T ss_pred cCcEEEEeccCCCCC--ceecchhhcceeEEEeccCCcc---------eeeeeecc------eeEEEEcCccccccc-c-
Confidence 345667776665111 1111111113668899887642 45565543 377776653311000 0
Q ss_pred CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEe-cCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480 97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLR 175 (325)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 175 (325)
+. .......++.+.-+| -+|+.++|+++| ..+++++ .|..|.|||... +...|+..
T Consensus 179 ---------~~--~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdt--------g~~~pL~~-- 235 (445)
T KOG2139|consen 179 ---------IR--MMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDT--------GQKIPLIP-- 235 (445)
T ss_pred ---------cc--cccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCC--------CCcccccc--
Confidence 00 001223333333445 789999999999 5676665 467899999988 55555542
Q ss_pred cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (325)
Q Consensus 176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw 255 (325)
-.-+.++-+.|+|++. +|+.+.-|+..++|+....-. ..+ .....+.|...+|+|.|..+|.+++..-. +|
T Consensus 236 ~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~wt-----~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~--ly 306 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSWT-----KER-WILGSGRVQTACWSPCGSFLLFACSGSPR--LY 306 (445)
T ss_pred cCCCceeeEEEcCCCC-EEEEecccceeeeehhcccce-----ecc-eeccCCceeeeeecCCCCEEEEEEcCCce--EE
Confidence 2345688999999999 899999999999996554311 111 12234589999999999877777775544 44
Q ss_pred EccCCCCC------------CCeeEee---------ccCCCeeEEEeCCCCCc
Q 020480 256 DLRTPSVS------------KPVQSVV---------AHQSEVGVSILNASFRL 287 (325)
Q Consensus 256 d~~~~~~~------------~~~~~~~---------~h~~~v~~i~~~p~~~~ 287 (325)
.+...... .++..+. ...+++.+++|+|.|..
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey 359 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY 359 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE
Confidence 44321110 0011110 12467899999999984
No 209
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.26 E-value=2.7e-11 Score=109.28 Aligned_cols=199 Identities=16% Similarity=0.281 Sum_probs=148.8
Q ss_pred HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480 34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN 113 (325)
Q Consensus 34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (325)
.+..|.++|.+-.++|+|....+ ..++.+... .-.+|.+..| ..
T Consensus 60 r~l~h~tpw~vad~qws~h~a~~--------~wiVsts~q-----kaiiwnlA~s-----------------------s~ 103 (1081)
T KOG0309|consen 60 RWLHHITPWQVADVQWSPHPAKP--------YWIVSTSNQ-----KAIIWNLAKS-----------------------SS 103 (1081)
T ss_pred eeeeccCcchhcceecccCCCCc--------eeEEecCcc-----hhhhhhhhcC-----------------------Cc
Confidence 34567789999999999987654 444444322 2335666555 22
Q ss_pred CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 193 (325)
..++++ ..+|..+|+.+.|+|+.+..+|+++.|..|..||++.. ..++.....-......++|+-..+ .
T Consensus 104 ~aIef~-lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp---------~~p~ys~~~w~s~asqVkwnyk~p-~ 172 (1081)
T KOG0309|consen 104 NAIEFV-LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP---------HRPFYSTSSWRSAASQVKWNYKDP-N 172 (1081)
T ss_pred cceEEE-EecCccceeccccCCCCCcceeeccccccceeeeccCC---------CcceeeeecccccCceeeecccCc-c
Confidence 345553 67899999999999999999999999999999999872 455666665556778999998888 4
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
+.+.+....|.+||++.+. .++..+++|...|+.+.|+..-...+.+++.||+|++||...... .-.....-.
T Consensus 173 vlasshg~~i~vwd~r~gs-----~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~ 245 (1081)
T KOG0309|consen 173 VLASSHGNDIFVWDLRKGS-----TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTN 245 (1081)
T ss_pred hhhhccCCceEEEeccCCC-----cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceecccc
Confidence 6666777889999999875 467888889999999999875556788999999999999886543 112222345
Q ss_pred CCeeEEEeCCCCC
Q 020480 274 SEVGVSILNASFR 286 (325)
Q Consensus 274 ~~v~~i~~~p~~~ 286 (325)
.+|+.-.+-|-|.
T Consensus 246 ~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 246 FPIWRGRYLPFGE 258 (1081)
T ss_pred CcceeccccccCc
Confidence 6777777777665
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=4e-10 Score=93.98 Aligned_cols=152 Identities=13% Similarity=0.161 Sum_probs=106.6
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCC----CCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL----DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
..+..|+|++|-|.+...|++|+..| |.+|..........+ ..-...+....+| .+|+++.|++++. .+++++
T Consensus 138 ~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS 214 (445)
T KOG2139|consen 138 VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTAS 214 (445)
T ss_pred hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecc
Confidence 45678999999998878999988765 889987653322210 0011112334466 6899999999998 677776
Q ss_pred -CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480 199 -DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 199 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
.|..|.|||..++.. .++. ....+.+.-+.|+|++ .+|.++.-|+..++|+....-. -....-..+.|.
T Consensus 215 ~gsssi~iWdpdtg~~----~pL~--~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt---~erw~lgsgrvq 284 (445)
T KOG2139|consen 215 FGSSSIMIWDPDTGQK----IPLI--PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWT---KERWILGSGRVQ 284 (445)
T ss_pred cCcceEEEEcCCCCCc----cccc--ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccce---ecceeccCCcee
Confidence 567899999998855 2333 2234568889999998 5777889999999996654332 111112345899
Q ss_pred EEEeCCCCCc
Q 020480 278 VSILNASFRL 287 (325)
Q Consensus 278 ~i~~~p~~~~ 287 (325)
..+|+|.|++
T Consensus 285 tacWspcGsf 294 (445)
T KOG2139|consen 285 TACWSPCGSF 294 (445)
T ss_pred eeeecCCCCE
Confidence 9999999984
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.23 E-value=6.2e-11 Score=103.38 Aligned_cols=154 Identities=13% Similarity=0.114 Sum_probs=118.4
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 218 (325)
..|+.++.||.+.+.+-.. +....+..|.+++.+-.|+|+|. -|+|++.||.|++|.-....
T Consensus 76 d~~~i~s~DGkf~il~k~~-----------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGML------ 137 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-----------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGML------ 137 (737)
T ss_pred ceEEEEcCCceEEEecccc-----------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccchH------
Confidence 5688889999999988654 44556789999999999999999 59999999999999865431
Q ss_pred ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEE
Q 020480 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCT 296 (325)
Q Consensus 219 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~ 296 (325)
..++......|+|++|.|+..+++.+.+. .+.|=-+.... .+...++|.+-|.++.|++...+ +||.|..-+
T Consensus 138 -RStl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~---k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfK 211 (737)
T KOG1524|consen 138 -RSTVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANS---KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFK 211 (737)
T ss_pred -HHHHhhcCceeEEEEECCCCCceEEecCC--eEEEeeccccc---ceeEEeccCcEEEEeecCccccceeecCCceeEE
Confidence 22333456689999999987666655443 44444444444 36677899999999999997765 999999999
Q ss_pred eeecce------eeeccCeeEEEeec
Q 020480 297 HRHSRY------LLYKFPFFVLVFPL 316 (325)
Q Consensus 297 ~~~~~~------~~~~~~~~~~~~~~ 316 (325)
+||..- ....||++++.|..
T Consensus 212 vWD~~G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 212 IWDAQGANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred eecccCcccccCChhccceeeeeecc
Confidence 998532 23679999988753
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.2e-09 Score=99.01 Aligned_cols=147 Identities=9% Similarity=0.078 Sum_probs=93.2
Q ss_pred CeeEEEecCCCCcEEEE-EecCCeEEEE--eCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 127 EVNRARYMPQNPFLIAT-KTVSAEVYVF--DYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~-g~~dg~v~vw--d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
....++|+|+|. .|+. ...+|.+.|| |+.. .....+..+...+....|+|++..+++++..+|..
T Consensus 249 ~~~~~~wSPDG~-~La~~~~~~g~~~Iy~~d~~~-----------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~ 316 (429)
T PRK01742 249 HNGAPAFSPDGS-RLAFASSKDGVLNIYVMGANG-----------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSP 316 (429)
T ss_pred ccCceeECCCCC-EEEEEEecCCcEEEEEEECCC-----------CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCc
Confidence 345689999994 5554 4568876665 5443 22345566777788999999998444555578889
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA 283 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p 283 (325)
.||++...... ...+ .+.. ...+|+|++. .++.++.++ +.+||+.++.. ..+... ....++.|+|
T Consensus 317 ~I~~~~~~~~~-----~~~l-~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~----~~lt~~-~~~~~~~~sP 381 (429)
T PRK01742 317 QVYRMSASGGG-----ASLV-GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSGST----EVLSST-FLDESPSISP 381 (429)
T ss_pred eEEEEECCCCC-----eEEe-cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCCe----EEecCC-CCCCCceECC
Confidence 99987653221 1112 2332 4578999984 666666655 55699988763 222111 1235678999
Q ss_pred CCCc--cCCCCceEEeeec
Q 020480 284 SFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 284 ~~~~--~~~~d~~~~~~~~ 300 (325)
+|++ .++.++...+|.+
T Consensus 382 dG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCEEEEEEcCCCceEEEE
Confidence 9985 4455676766654
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.21 E-value=5.1e-10 Score=100.23 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=104.2
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw 206 (325)
.|+.++|-|+|..+++++ +..+.+||.+. ...+.++++|.+.|.+++|+.+|. .+++|+.|..|.+|
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~nd----------G~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSD----------GTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIW 80 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCC----------cccccccccccceEEEEEEccCCc-eeccCCCceeEEEe
Confidence 899999999996555553 35899999987 344778999999999999999999 89999999999999
Q ss_pred eCCCCCC-----CCcccce------------------------Eeee--cCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480 207 DINAAPK-----NKSLEAM------------------------QIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (325)
Q Consensus 207 d~~~~~~-----~~~~~~~------------------------~~~~--~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw 255 (325)
..+-... ...+++. .... .....|.+.+|..+| .+++-|-.+|+|.+-
T Consensus 81 ~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 81 TSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIR 159 (1081)
T ss_pred cccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCC-cEEEEeccCceEEee
Confidence 8653211 0001000 0000 123567888899887 699999999999987
Q ss_pred EccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480 256 DLRTPSVSKPVQSVVAHQSEVGVSILNASFR 286 (325)
Q Consensus 256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 286 (325)
+-..... -.+..-.+..++|++|+|+|...
T Consensus 160 Nk~gEek-~~I~Rpgg~Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 160 NKNGEEK-VKIERPGGSNSPIWSICWNPSSG 189 (1081)
T ss_pred cCCCCcc-eEEeCCCCCCCCceEEEecCCCC
Confidence 5433221 11222244678999999999754
No 214
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.20 E-value=6.6e-09 Score=91.10 Aligned_cols=175 Identities=11% Similarity=0.094 Sum_probs=112.3
Q ss_pred CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 193 (325)
+++..+..+.+.+....+.++|++..+++++..++.|.+|++... +........ ........++++|+++ +
T Consensus 23 g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-------g~l~~~~~~-~~~~~p~~i~~~~~g~-~ 93 (330)
T PRK11028 23 GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-------GALTFAAES-PLPGSPTHISTDHQGR-F 93 (330)
T ss_pred CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC-------CceEEeeee-cCCCCceEEEECCCCC-E
Confidence 455666667777778899999998444444456889999998631 111112222 1233567899999999 5
Q ss_pred EEEEe-CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC----eeE
Q 020480 194 LLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP----VQS 268 (325)
Q Consensus 194 l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~ 268 (325)
+++++ .++.|.+|++....... ..+..+. +......++++|++..++++...++.|.+||+.......+ ...
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~--~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPV--APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCC--Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence 55554 58999999997432110 1222222 2234677889999866667777889999999986432111 011
Q ss_pred eeccCCCeeEEEeCCCCCc---cCCCCceEEeeecc
Q 020480 269 VVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSR 301 (325)
Q Consensus 269 ~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~ 301 (325)
.. .......++|+|+|++ +...++++.+|++.
T Consensus 171 ~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 171 TV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred cC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 11 2344678999999985 33347889988875
No 215
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.18 E-value=7.5e-11 Score=94.29 Aligned_cols=122 Identities=14% Similarity=0.190 Sum_probs=97.4
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
...|.++|.++.|.+.- ..=++|+.+-.+..|++.... +.......+.-..-.|..+..-|++. .++|++.|
T Consensus 201 ~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~------gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD 272 (323)
T KOG0322|consen 201 NASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHST------GSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWD 272 (323)
T ss_pred hhhccCcceeeeechhh-cCCcCCCccccceeeeecccc------CcccccceEEecCCCccceEEccCCc-EEeecccC
Confidence 34599999999999865 455677888889999987622 11221222222334678899999999 99999999
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~ 257 (325)
+.||||..++. .++..++-|+..|++++|+|+. .++|+++.|+.|.+|++
T Consensus 273 ~RiRVyswrtl------~pLAVLkyHsagvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 273 HRIRVYSWRTL------NPLAVLKYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEEEEeccC------CchhhhhhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 99999999987 5788889999999999999984 69999999999999986
No 216
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.17 E-value=1e-09 Score=104.36 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=128.4
Q ss_pred EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
.....|...|..++.++....+|++|+.||+|++|+.++..... +..+...++..-.+.+..+...+.+. .+|.++
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t 1117 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMCGNGD-QFAVST 1117 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEeccCCC-eEEEEc
Confidence 34556999999999998776799999999999999998743221 12223344444567889999999888 799999
Q ss_pred CCCcEEEEeCCCCCCCC-cccceEeeecCC-ccE-EEEEeecCCCc-EEEEEecCCcEEEEEccCCCCCCCeeEee--cc
Q 020480 199 DDAQICLWDINAAPKNK-SLEAMQIFKVHE-GVV-EDVAWHLRHEY-LFGSVGDDQYLLIWDLRTPSVSKPVQSVV--AH 272 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~-~~v-~~v~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h 272 (325)
.||.|++.++......+ .....+....+. +.+ ..-++...... .++.+..-+.|..||+|+... +.+++ ..
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~---~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD---AWRLKNQLR 1194 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh---HHhhhcCcc
Confidence 99999999998732111 111122222222 223 33334332233 788888999999999998874 44442 23
Q ss_pred CCCeeEEEeCCCCCc--cCCCCceEEeeeccee----eeccCee
Q 020480 273 QSEVGVSILNASFRL--SHEDTCTCTHRHSRYL----LYKFPFF 310 (325)
Q Consensus 273 ~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~----~~~~~~~ 310 (325)
.+.|++++.+|.+.+ +|...|...+||+|.- .|.+|..
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~ 1238 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR 1238 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc
Confidence 478999999999885 7888899999998763 4666644
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=5.5e-10 Score=104.43 Aligned_cols=143 Identities=19% Similarity=0.162 Sum_probs=117.7
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 218 (325)
-++++|+.-+.|.+|+... ...+. .+.+|.+.+.++.|+-++. +++++|.|.++++|++.+.+..
T Consensus 146 ~~i~~gsv~~~iivW~~~~---------dn~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~---- 210 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHE---------DNKPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVL---- 210 (967)
T ss_pred EEEEeccccccEEEEeccc---------cCCcc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeeccccccc----
Confidence 6799999999999999874 12223 6889999999999999999 8999999999999999987542
Q ss_pred ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC-CCeeEEEeCCCCCc--cCCCCceE
Q 020480 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-SEVGVSILNASFRL--SHEDTCTC 295 (325)
Q Consensus 219 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~i~~~p~~~~--~~~~d~~~ 295 (325)
....-+|+..|+.++|+|. .++|++.|.+.++|+..... +..+..|. ..|+.++.++...+ +++.|+++
T Consensus 211 -~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~----l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 211 -GCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ----LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred -CcccccccceeEEEEeccc---eeEEeccceEEEEEecccce----ehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence 2244679999999999985 79999999999999665544 45666664 57899999987764 99999999
Q ss_pred Eeeecceee
Q 020480 296 THRHSRYLL 304 (325)
Q Consensus 296 ~~~~~~~~~ 304 (325)
++|++....
T Consensus 283 k~~~l~~r~ 291 (967)
T KOG0974|consen 283 KLWDLNGRG 291 (967)
T ss_pred hhhhhhccc
Confidence 999875544
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=6.2e-10 Score=93.67 Aligned_cols=140 Identities=17% Similarity=0.223 Sum_probs=114.2
Q ss_pred CCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 125 DGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 125 ~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
+-.++++.|-+. ....||+++.-+.|++||.+. ..+|+..+.--..+++++...|.++ ++++|..-|.+
T Consensus 202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~---------qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l 271 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH---------QRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQL 271 (412)
T ss_pred eeeeccceecCCCCCceEEEEecceeEEEecCcc---------cCcceeEeccccCcceeeeecCCCc-EEEEecccchh
Confidence 345678888885 137899999999999999986 3578888887788999999999998 89999999999
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA 283 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p 283 (325)
..||++.+.. ....+.+-.+.|.++..+|.+ .++|+||-|..|||+|+.+... +... .-++.+++|.+.+
T Consensus 272 ~~FD~r~~kl-----~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkl---l~kv-YvKs~lt~il~~~ 341 (412)
T KOG3881|consen 272 AKFDLRGGKL-----LGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKL---LHKV-YVKSRLTFILLRD 341 (412)
T ss_pred heecccCcee-----eccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccchh---hhhh-hhhccccEEEecC
Confidence 9999998742 233478888999999999987 5999999999999999999652 3332 2356678888866
Q ss_pred C
Q 020480 284 S 284 (325)
Q Consensus 284 ~ 284 (325)
+
T Consensus 342 ~ 342 (412)
T KOG3881|consen 342 D 342 (412)
T ss_pred C
Confidence 4
No 219
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.13 E-value=6e-09 Score=93.03 Aligned_cols=162 Identities=20% Similarity=0.310 Sum_probs=127.0
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceEEEEe-cCCCCCeEEEE
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSW-SKFKEGHLLSG 197 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~p~~~~~l~s~ 197 (325)
....|...+..+.+.+.+ ..++.++.|+.+.+|+... .. .....+.++. ..+..+.+ ++++...++..
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDN--------GE-KLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCC--------Cc-eeEEEEeccCCCceeeEEEECCCcceEEecc
Confidence 356789999999999988 6788888999999999987 11 1345555533 36777777 77766344444
Q ss_pred e-CCCcEEEEeCCC-CCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec-CCcEEEEEccCCCCCCCeeEeeccCC
Q 020480 198 S-DDAQICLWDINA-APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVVAHQS 274 (325)
Q Consensus 198 s-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~ 274 (325)
+ .|+.+.+||... . .....+..|...|..++|+|++. .+++++. |+.+++|+++... .+..+..|..
T Consensus 130 ~~~d~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 199 (466)
T COG2319 130 SSLDGTVKLWDLSTPG------KLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK---PLSTLAGHTD 199 (466)
T ss_pred CCCCccEEEEEecCCC------eEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc---eEEeeccCCC
Confidence 4 499999999986 3 34667888999999999999974 7777775 9999999999865 4777788999
Q ss_pred CeeEEEeCCCCC-c--cCCCCceEEeeecc
Q 020480 275 EVGVSILNASFR-L--SHEDTCTCTHRHSR 301 (325)
Q Consensus 275 ~v~~i~~~p~~~-~--~~~~d~~~~~~~~~ 301 (325)
.|.+++|+|++. + +++.|+.+++|+.+
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred ceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence 999999999986 3 44789999998654
No 220
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=3.6e-09 Score=89.29 Aligned_cols=130 Identities=10% Similarity=0.019 Sum_probs=99.9
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
....|.+.|.|++|...+ ..+.+|+.+++|.+.|+.+ ....-+..-....+.|+.+..+|..+ .|++.+.
T Consensus 100 ~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt--------~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~ 169 (609)
T KOG4227|consen 100 MEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIET--------KQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTR 169 (609)
T ss_pred ccCccccceEEEEEccCC-eeEecCCCcceeEeeeccc--------ceeeeeecccCcccceeecccCCCCc-eEEEEec
Confidence 344577999999999876 7999999999999999987 21111222223345899999999976 8999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 262 (325)
++.|.+||.+.......+ ............+.|+|..+.+|++.+..+-+.+||.|....
T Consensus 170 ~~~V~~~D~Rd~~~~~~~---~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 170 AKLVSFIDNRDRQNPISL---VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred CceEEEEeccCCCCCCce---eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence 999999999976532111 112223456788999999899999999999999999998653
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=3.9e-10 Score=97.36 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=131.9
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCC-CCeEEEEe
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFK-EGHLLSGS 198 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~-~~~l~s~s 198 (325)
.-.|.|.|+.|.|+..| ..+++|+.|..|.+||+.. ..+...+ .+|...|..-.|.|.. ...+++++
T Consensus 138 L~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~----------~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVS----------GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred ccCCCCccceeeecccC-ceeeccCccceEEeehhhc----------cCcccccccccccchhhhhccCCCCCcCceecc
Confidence 34699999999999998 7999999999999999987 2334333 4788888888887753 23699999
Q ss_pred CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC---C
Q 020480 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS---E 275 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~ 275 (325)
.||.+++=.+...... .-...+..|.+.|..++.-|..+..|.+++.|+.+.-+|+|.......+.....+.. .
T Consensus 207 ~dgqvr~s~i~~t~~~---e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 207 RDGQVRVSEILETGYV---ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred ccCceeeeeeccccce---ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence 9999998876654332 112345678999999999999889999999999999999998875333333344444 5
Q ss_pred eeEEEeCCCCC--c-cCCCCceEEeeecceee
Q 020480 276 VGVSILNASFR--L-SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 276 v~~i~~~p~~~--~-~~~~d~~~~~~~~~~~~ 304 (325)
..+|+.+|... + +++.|-..++++.|.+.
T Consensus 284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~ 315 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRID 315 (559)
T ss_pred eeeEecCCCCccccccCChhhhhhhhcccchh
Confidence 68899998665 2 88899999999887654
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=8.4e-09 Score=93.59 Aligned_cols=153 Identities=12% Similarity=0.126 Sum_probs=98.6
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE-E
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS-G 197 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s-~ 197 (325)
..|...+...+|+|+| +.|+..+.+ ..|++||+.. +....+..+.+| ...++|+|++. .|+. .
T Consensus 200 t~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~t--------g~~~~l~~~~g~---~~~~~wSPDG~-~La~~~ 266 (429)
T PRK01742 200 NRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRS--------GARKVVASFRGH---NGAPAFSPDGS-RLAFAS 266 (429)
T ss_pred ccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCC--------CceEEEecCCCc---cCceeECCCCC-EEEEEE
Confidence 4577889999999999 566665533 4799999976 222223333333 34689999998 5555 4
Q ss_pred eCCCcEEEE--eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480 198 SDDAQICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 198 s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
+.+|.+.|| |+..+ ....+..+...+...+|+|++..+++++..+|..+||++..... ....+ .+..
T Consensus 267 ~~~g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~--~~~~l-~~~~- 335 (429)
T PRK01742 267 SKDGVLNIYVMGANGG-------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG--GASLV-GGRG- 335 (429)
T ss_pred ecCCcEEEEEEECCCC-------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEe-cCCC-
Confidence 578876666 55443 13345556667888999999865555666788999998875432 12222 3333
Q ss_pred eeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 276 VGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 276 v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
.+.+|+|+|+. ..+.+..+. |++
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~-~Dl 360 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVK-QDL 360 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEE-EEC
Confidence 45789999984 333344444 553
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.10 E-value=5.5e-11 Score=101.97 Aligned_cols=162 Identities=13% Similarity=0.171 Sum_probs=132.0
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
+...+.-...|.++.|-... .+||++ ....++|||-.. ..++-+..| ..|..+.|-|..- +|+++
T Consensus 163 L~~Ei~v~Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~G-----------tElHClk~~-~~v~rLeFLPyHf-LL~~~ 227 (545)
T KOG1272|consen 163 LHFEINVMETVRDVTFLHNE-QFFAVA-QKKYVYVYDNNG-----------TELHCLKRH-IRVARLEFLPYHF-LLVAA 227 (545)
T ss_pred eeeeeehhhhhhhhhhhcch-HHHHhh-hhceEEEecCCC-----------cEEeehhhc-Cchhhhcccchhh-eeeec
Confidence 33455566788888888765 677775 456899999765 334445544 4688999999876 89999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
+..|.++.-|+..++ .+..+....+.+..++-+|-+ .++-.|...|+|.+|...+.+ |+..+-.|.++|.
T Consensus 228 ~~~G~L~Y~DVS~Gk------lVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~ske---PLvKiLcH~g~V~ 297 (545)
T KOG1272|consen 228 SEAGFLKYQDVSTGK------LVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKE---PLVKILCHRGPVS 297 (545)
T ss_pred ccCCceEEEeechhh------hhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcc---hHHHHHhcCCCcc
Confidence 999999999999984 455566667788889999987 588899999999999998877 5777788999999
Q ss_pred EEEeCCCCCc--cCCCCceEEeeecceee
Q 020480 278 VSILNASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 278 ~i~~~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
+|+++++|.+ +.|.|..+++||+|.+.
T Consensus 298 siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 298 SIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred eEEECCCCcEEeecccccceeEeeecccc
Confidence 9999999996 88999999999999875
No 224
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=1.5e-09 Score=98.22 Aligned_cols=162 Identities=17% Similarity=0.295 Sum_probs=125.6
Q ss_pred CCCeeEEEecCCCC-cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 125 DGEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 125 ~~~v~~v~~~~~~~-~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
+-.|..+.|+|... .+-++......-.+|++.... .....+.+-+|+.+|+++.|+|+.+..+++++.|..+
T Consensus 67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~v 139 (1081)
T KOG0309|consen 67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYV 139 (1081)
T ss_pred cchhcceecccCCCCceeEEecCcchhhhhhhhcCC-------ccceEEEEecCccceeccccCCCCCcceeeccccccc
Confidence 45677888998631 244444556667789987521 1233456779999999999999999999999999999
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA 283 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p 283 (325)
..||++.... ++..+..-......|.|+...++.+ +.+....|++||+|.+.. |+..+++|...|+.++|+.
T Consensus 140 h~wd~rSp~~-----p~ys~~~w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~--pl~s~K~~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 140 HAWDMRSPHR-----PFYSTSSWRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGST--PLCSLKGHVSSVNSIDFNR 211 (1081)
T ss_pred eeeeccCCCc-----ceeeeecccccCceeeecccCcchh-hhccCCceEEEeccCCCc--ceEEecccceeeehHHHhh
Confidence 9999998753 4555555556677899998887666 456677899999999886 8999999999999999986
Q ss_pred C--CC-ccCCCCceEEeeecc
Q 020480 284 S--FR-LSHEDTCTCTHRHSR 301 (325)
Q Consensus 284 ~--~~-~~~~~d~~~~~~~~~ 301 (325)
. ++ ++.+.|++++.|+..
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred hhhhhhcccCCCCceeeeccc
Confidence 3 33 488999999999763
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=4e-08 Score=89.03 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=84.7
Q ss_pred CCCeeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CCC
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDA 201 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg 201 (325)
.+.+....|+|+|..++++.+.+| .|++||+.. + ....+..+...+....|+|++. .|+.++ .++
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t--------g---~~~~lt~~~~~~~~~~wSPDG~-~I~f~s~~~g 309 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--------G---QIRQVTDGRSNNTEPTWFPDSQ-NLAYTSDQAG 309 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC--------C---CEEEccCCCCCcCceEECCCCC-EEEEEeCCCC
Confidence 344556899999954444545555 588889876 2 1233444445678899999998 565554 445
Q ss_pred cEEEE--eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC--CcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480 202 QICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 202 ~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
...|| |+..+. ...+..........+|+|+|..+++++..+ ..|.+||+.++. ...+.. .....
T Consensus 310 ~~~Iy~~d~~~g~-------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----~~~Lt~-~~~~~ 377 (429)
T PRK03629 310 RPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----VQVLTD-TFLDE 377 (429)
T ss_pred CceEEEEECCCCC-------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEeCC-CCCCC
Confidence 55555 555432 222333344456789999985444444333 348888988776 333322 12234
Q ss_pred EEEeCCCCCc
Q 020480 278 VSILNASFRL 287 (325)
Q Consensus 278 ~i~~~p~~~~ 287 (325)
...|+|+|+.
T Consensus 378 ~p~~SpDG~~ 387 (429)
T PRK03629 378 TPSIAPNGTM 387 (429)
T ss_pred CceECCCCCE
Confidence 6789999984
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=7.4e-09 Score=91.36 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=104.1
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE------ecCC-----CceEEEEecCCCCCe
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL------RGHS-----TEGYGLSWSKFKEGH 193 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~------~~h~-----~~v~~l~~~p~~~~~ 193 (325)
.++++++..++.+ .+||+|+.+|.|..||.+.- ..+.++ ..|. ..|+++.|+-+|- .
T Consensus 175 ~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~k----------srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~ 242 (703)
T KOG2321|consen 175 SGELNVVSINEEH-GLLACGTEDGVVEFWDPRDK----------SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-H 242 (703)
T ss_pred cccceeeeecCcc-ceEEecccCceEEEecchhh----------hhheeeecccccCCCccccccCcceEEEecCCce-e
Confidence 3889999999988 69999999999999999871 112222 2233 3499999999887 7
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceEe-eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480 194 LLSGSDDAQICLWDINAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (325)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 272 (325)
++.|..+|.+.|||+++.. ++.. -.+...+|..+.|.+.+..--+.......++|||-.+++. +..+..
T Consensus 243 ~aVGts~G~v~iyDLRa~~------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~---~asiEp- 312 (703)
T KOG2321|consen 243 VAVGTSTGSVLIYDLRASK------PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP---MASIEP- 312 (703)
T ss_pred EEeeccCCcEEEEEcccCC------ceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc---eeeccc-
Confidence 9999999999999999873 2322 2234457889999776433333445577899999999983 666653
Q ss_pred CCCeeEEEeCCCCC
Q 020480 273 QSEVGVSILNASFR 286 (325)
Q Consensus 273 ~~~v~~i~~~p~~~ 286 (325)
...++.+++-|++-
T Consensus 313 t~~lND~C~~p~sG 326 (703)
T KOG2321|consen 313 TSDLNDFCFVPGSG 326 (703)
T ss_pred cCCcCceeeecCCc
Confidence 55699999998754
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=5e-08 Score=88.67 Aligned_cols=139 Identities=15% Similarity=0.134 Sum_probs=86.3
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CC
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DD 200 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~d 200 (325)
+.+...+.+|+|+|..++++.+.+| .|++|++.. +. ...+..+.......+|+|++. .++.++ .+
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~--------g~---~~~lt~~~~~~~~~~~spDG~-~l~f~sd~~ 313 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS--------RQ---LTRLTNHFGIDTEPTWAPDGK-SIYFTSDRG 313 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC--------CC---eEECccCCCCccceEECCCCC-EEEEEECCC
Confidence 3455567899999965555656555 588999876 22 334445555567889999998 555544 55
Q ss_pred Cc--EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCC--cEEEEEccCCCCCCCeeEeeccCCC
Q 020480 201 AQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQ--YLLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 201 g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
|. |.++|+..+. ...+..+.......+|+|++. .++..+ .++ .|.+||+.++.. ..+. +...
T Consensus 314 g~~~iy~~dl~~g~-------~~~lt~~g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt-~~~~ 380 (433)
T PRK04922 314 GRPQIYRVAASGGS-------AERLTFQGNYNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGSV----RTLT-PGSL 380 (433)
T ss_pred CCceEEEEECCCCC-------eEEeecCCCCccCEEECCCCC-EEEEEECCCCceeEEEEECCCCCe----EECC-CCCC
Confidence 55 5555665442 111222223345689999985 554443 333 589999987662 3332 2234
Q ss_pred eeEEEeCCCCCc
Q 020480 276 VGVSILNASFRL 287 (325)
Q Consensus 276 v~~i~~~p~~~~ 287 (325)
.....|+|+|+.
T Consensus 381 ~~~p~~spdG~~ 392 (433)
T PRK04922 381 DESPSFAPNGSM 392 (433)
T ss_pred CCCceECCCCCE
Confidence 456799999984
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=4e-08 Score=89.07 Aligned_cols=144 Identities=12% Similarity=0.067 Sum_probs=87.3
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
..+.+....|+|+|..++++.+.+|...||.+... ......+..+........|+|++..+++++..+|..
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~---------~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~ 308 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD---------GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAP 308 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECC---------CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCc
Confidence 44566788999999555556777887777665431 012334444555567789999999444444455777
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC---cEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
.+|.+..... . ...+..........+|+|+|. .++..+.++ .|.+||+.++.. ..+.. ........
T Consensus 309 ~Iy~~~~~~g----~-~~~lt~~g~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~ 377 (427)
T PRK02889 309 QIYRMPASGG----A-AQRVTFTGSYNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPS 377 (427)
T ss_pred EEEEEECCCC----c-eEEEecCCCCcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCce
Confidence 7776643211 1 111111223344678999985 665555443 599999987762 33322 22346789
Q ss_pred eCCCCCc
Q 020480 281 LNASFRL 287 (325)
Q Consensus 281 ~~p~~~~ 287 (325)
|+|+|+.
T Consensus 378 ~spdg~~ 384 (427)
T PRK02889 378 FAPNGRY 384 (427)
T ss_pred ECCCCCE
Confidence 9999984
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=9e-08 Score=87.11 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=89.1
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCe--EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-C
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAE--VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-D 199 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~ 199 (325)
.+.+.+...+|+|+|..++++.+.++. |++||+.. + ....+..+........|+|++. .++..+ .
T Consensus 243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--------~---~~~~Lt~~~~~~~~~~~spDG~-~i~f~s~~ 310 (435)
T PRK05137 243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--------G---TTTRLTDSPAIDTSPSYSPDGS-QIVFESDR 310 (435)
T ss_pred cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC--------C---ceEEccCCCCccCceeEcCCCC-EEEEEECC
Confidence 456677889999999655566666665 67778765 2 2344555656667899999998 555554 4
Q ss_pred CC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec-C--CcEEEEEccCCCCCCCeeEeeccCC
Q 020480 200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-D--QYLLIWDLRTPSVSKPVQSVVAHQS 274 (325)
Q Consensus 200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~h~~ 274 (325)
+| .|+++|+..+. .+.+..+...+....|+|++. .|+..+. . ..|.+||+.... ...+. ...
T Consensus 311 ~g~~~Iy~~d~~g~~-------~~~lt~~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~ 377 (435)
T PRK05137 311 SGSPQLYVMNADGSN-------PRRISFGGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGF 377 (435)
T ss_pred CCCCeEEEEECCCCC-------eEEeecCCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc----eEecc-CCC
Confidence 44 57777876542 223333345567788999985 5544443 3 357788875543 22222 223
Q ss_pred CeeEEEeCCCCCc
Q 020480 275 EVGVSILNASFRL 287 (325)
Q Consensus 275 ~v~~i~~~p~~~~ 287 (325)
.+..+.|+|+|+.
T Consensus 378 ~~~~p~~spDG~~ 390 (435)
T PRK05137 378 LVEGPTWAPNGRV 390 (435)
T ss_pred CCCCCeECCCCCE
Confidence 4677899999984
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=3.1e-08 Score=90.14 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=96.6
Q ss_pred eccCCCeeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
..|.+.+...+|+|+| +.|+..+. +..|++|++.. +. ...+..+.+.+...+|+|++..++++.+
T Consensus 198 t~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~--------g~---~~~l~~~~g~~~~~~~SPDG~~la~~~~ 265 (435)
T PRK05137 198 TDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLET--------GQ---RELVGNFPGMTFAPRFSPDGRKVVMSLS 265 (435)
T ss_pred ecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCC--------Cc---EEEeecCCCcccCcEECCCCCEEEEEEe
Confidence 3577789999999999 46665442 46899999976 22 2334456667788999999985556777
Q ss_pred CCCc--EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCC--cEEEEEccCCCCCCCeeEeeccC
Q 020480 199 DDAQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQ--YLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 199 ~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
.++. |.+||+..+. ...+..+.......+|+|++. .++..+ .+| .|+++|+..+. ...+..+.
T Consensus 266 ~~g~~~Iy~~d~~~~~-------~~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~ 333 (435)
T PRK05137 266 QGGNTDIYTMDLRSGT-------TTRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGSN----PRRISFGG 333 (435)
T ss_pred cCCCceEEEEECCCCc-------eEEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCCC----eEEeecCC
Confidence 7666 6677887652 334455555567789999985 454444 444 57777876554 34444345
Q ss_pred CCeeEEEeCCCCCc
Q 020480 274 SEVGVSILNASFRL 287 (325)
Q Consensus 274 ~~v~~i~~~p~~~~ 287 (325)
..+....|+|+|+.
T Consensus 334 ~~~~~~~~SpdG~~ 347 (435)
T PRK05137 334 GRYSTPVWSPRGDL 347 (435)
T ss_pred CcccCeEECCCCCE
Confidence 56777899999984
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=7.3e-09 Score=97.11 Aligned_cols=121 Identities=15% Similarity=0.265 Sum_probs=100.4
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
+..+|.+.|.++.++.+| .++++.+.|.++++|++.+. +. .....-+|+..|+.+.++|. .++|++.
T Consensus 170 ~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~--------~~-~~~~~fgHsaRvw~~~~~~n---~i~t~ge 236 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSR--------EV-LGCTGFGHSARVWACCFLPN---RIITVGE 236 (967)
T ss_pred eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccc--------cc-cCcccccccceeEEEEeccc---eeEEecc
Confidence 678999999999999999 79999999999999999872 21 12345589999999999987 6999999
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCC-ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
|.++++|+.... .+..+..|. ..++.++..+.. ..++|++.|+.+++||+....
T Consensus 237 dctcrvW~~~~~-------~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 237 DCTCRVWGVNGT-------QLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ceEEEEEecccc-------eehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhccc
Confidence 999999976643 234666665 468999988865 688999999999999987643
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=4e-09 Score=85.84 Aligned_cols=170 Identities=16% Similarity=0.042 Sum_probs=114.4
Q ss_pred CCceEEEE-EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceEEEEecCCC
Q 020480 113 NGKVQIIQ-QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFK 190 (325)
Q Consensus 113 ~~~~~~~~-~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~ 190 (325)
.+.++..+ ...|.-++....|+...++++.+|+.|+.+..||++.+ . +.+. ..+-|+..|.++.-+|..
T Consensus 152 ~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p--------~-~~i~~n~kvH~~GV~SI~ss~~~ 222 (339)
T KOG0280|consen 152 EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP--------K-TFIWHNSKVHTSGVVSIYSSPPK 222 (339)
T ss_pred eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC--------c-ceeeecceeeecceEEEecCCCC
Confidence 34444333 33599999999999988899999999999999999841 1 1122 245688999999999988
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC--CCeeE
Q 020480 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--KPVQS 268 (325)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~ 268 (325)
+..++||+.|-.|++||.|...+ ++.. ..-.+.|+.+.++|.....+..++.-.-.+|-+....... .....
T Consensus 223 ~~~I~TGsYDe~i~~~DtRnm~k-----Pl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s 296 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRNMGK-----PLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPS 296 (339)
T ss_pred CceEEEeccccceeeeehhcccC-----cccc-CccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeec
Confidence 88999999999999999996543 2222 1234789999999965444444444444677776654421 01223
Q ss_pred eeccCCCeeEEEeCCCCCccCCCCceEEeeecc
Q 020480 269 VVAHQSEVGVSILNASFRLSHEDTCTCTHRHSR 301 (325)
Q Consensus 269 ~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~ 301 (325)
.+.|.+-+..-.|+.. .+.-.+|++++.+
T Consensus 297 ~~~hdSl~YG~DWd~~----~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 297 DKIHDSLCYGGDWDSK----DSFLATCSFYDKK 325 (339)
T ss_pred cccccceeeccccccc----cceeeeeeccccc
Confidence 3556666666666332 2233456666655
No 233
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=3.5e-08 Score=91.13 Aligned_cols=165 Identities=14% Similarity=0.135 Sum_probs=121.8
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
.|.-.+++.+++|.+ +++|+|..||+|.+|.--... +.......+.=|...|.++.|+++|. .|+||+..|.
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~------~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~V 274 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSS------DDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGV 274 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEeccccc------cccccceEEEecccccceeEEecCCc-eEeecccceE
Confidence 366778999999988 799999999999999754311 11222445667889999999999999 8999999999
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc--------CC
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH--------QS 274 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--------~~ 274 (325)
+-+|.+.++++ +-+..-.+.|..+.++|++ .+.+....|..|.+-...+......+..+... .+
T Consensus 275 Lv~Wq~~T~~k-------qfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 275 LVLWQLETGKK-------QFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred EEEEeecCCCc-------ccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 99999998753 2234456789999999997 57778888999999988665432223333222 34
Q ss_pred CeeEEEeCCC-CC-ccCCCCceEEeeeccee
Q 020480 275 EVGVSILNAS-FR-LSHEDTCTCTHRHSRYL 303 (325)
Q Consensus 275 ~v~~i~~~p~-~~-~~~~~d~~~~~~~~~~~ 303 (325)
-.+.++++|. +. +..+.-+.+.+++....
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEecccc
Confidence 5677888883 33 25667788888776443
No 234
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=6e-09 Score=86.59 Aligned_cols=190 Identities=15% Similarity=0.190 Sum_probs=125.9
Q ss_pred CCCceEEEEEeccCCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCC-----CCC--------------C----
Q 020480 112 ANGKVQIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPP-----LDG--------------A---- 167 (325)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~~-----~~~--------------~---- 167 (325)
.+|.+...+.+.-...|+.++|.+++ ...+...+.|.+|++|.+........ ..+ .
T Consensus 71 hepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ 150 (433)
T KOG1354|consen 71 HEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLE 150 (433)
T ss_pred cCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccce
Confidence 45666666677778899999999875 24566668999999998865322110 000 0
Q ss_pred --CCCcEEE-ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe--eecCCccEEEEEeecCCCcE
Q 020480 168 --CSPDLRL-RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI--FKVHEGVVEDVAWHLRHEYL 242 (325)
Q Consensus 168 --~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~ 242 (325)
..|.+.+ .+|+-.|.++.++.++. .++++. |=.|.+|++........+.-+.. +..-+.-|++..|||...++
T Consensus 151 vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~ 228 (433)
T KOG1354|consen 151 VEASPRRVYANAHTYHINSISVNSDKE-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNV 228 (433)
T ss_pred eeeeeeeeccccceeEeeeeeecCccc-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccE
Confidence 0011111 25788899999999988 677654 77899999987654432211111 11223568899999998899
Q ss_pred EEEEecCCcEEEEEccCCCCC-CC--ee----------EeeccCCCeeEEEeCCCCCccCCCC-ceEEeeeccee
Q 020480 243 FGSVGDDQYLLIWDLRTPSVS-KP--VQ----------SVVAHQSEVGVSILNASFRLSHEDT-CTCTHRHSRYL 303 (325)
Q Consensus 243 l~s~~~dg~i~iwd~~~~~~~-~~--~~----------~~~~h~~~v~~i~~~p~~~~~~~~d-~~~~~~~~~~~ 303 (325)
|+-.+..|+|++-|+|..... .. +. -+..--+.|..+.|+++|++.-+.| .++++||+.+-
T Consensus 229 f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme 303 (433)
T KOG1354|consen 229 FVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME 303 (433)
T ss_pred EEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence 999999999999999954310 00 00 0111235788999999999744444 89999998543
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.2e-08 Score=90.26 Aligned_cols=193 Identities=18% Similarity=0.181 Sum_probs=141.0
Q ss_pred hHHHHhhhHhcChhHHHHhhhcC-CCCCceEEEEeeCCCCC----------CCCCcceEEEEEEecCCCCCCCeEEEEEE
Q 020480 17 INEEYKIWKKNTPFLYDLVITHA-LEWPSLTVEWLPDREEP----------PGKDYSVQKMILGTHTSENEPNYLMLAQV 85 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~-~~~p~~s~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~i~~~ 85 (325)
.+..+|||......+|+-+.... +.-.|....|--..... ...+..+..++.|+... .+.++++
T Consensus 13 ~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g-----~v~~ys~ 87 (541)
T KOG4547|consen 13 GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG-----SVLLYSV 87 (541)
T ss_pred CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc-----cEEEEEe
Confidence 45788999999888886554443 23346666665222111 11233345566776543 3555544
Q ss_pred ECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE-eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCC
Q 020480 86 QLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ-INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL 164 (325)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~ 164 (325)
. .+.+..... -.|.+.|+++.++.+- ..|.+++.|+.+..|+...
T Consensus 88 ~--------------------------~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~------- 133 (541)
T KOG4547|consen 88 A--------------------------GGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKE------- 133 (541)
T ss_pred c--------------------------CCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEeccc-------
Confidence 2 334443222 3599999999999876 6899999999999999987
Q ss_pred CCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC-----C
Q 020480 165 DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-----H 239 (325)
Q Consensus 165 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-----~ 239 (325)
....+........+.+++.+|++. .+++|+ +.|++||+++. ..+..|.+|.+.|.+++|-.. |
T Consensus 134 ---~~~~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k------evv~~ftgh~s~v~t~~f~~~~~g~~G 201 (541)
T KOG4547|consen 134 ---KVIIRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK------EVVITFTGHGSPVRTLSFTTLIDGIIG 201 (541)
T ss_pred ---ceeeeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc------eEEEEecCCCcceEEEEEEEecccccc
Confidence 455677778888899999999988 788877 78999999987 568899999999999999876 6
Q ss_pred CcEEEEEecCCcEEEEEccCC
Q 020480 240 EYLFGSVGDDQYLLIWDLRTP 260 (325)
Q Consensus 240 ~~~l~s~~~dg~i~iwd~~~~ 260 (325)
..+|.+...+..+.+|-++..
T Consensus 202 ~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 202 KYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred ceeeeccccccceeEEEEEcc
Confidence 677878888888999988763
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=6.8e-08 Score=87.82 Aligned_cols=142 Identities=12% Similarity=0.112 Sum_probs=91.1
Q ss_pred ccCCCeeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
.+...+...+|+|+| +.|+..+. ...|++|++.. +.. ..+..+.+......|+|++..++++.+.
T Consensus 201 ~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~--------g~~---~~l~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 201 RSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLAT--------GQR---ELVASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred cCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCC--------CCE---EEeccCCCCccCceECCCCCEEEEEEeC
Confidence 466778899999999 56665553 34799999976 222 2233334445578999999855556666
Q ss_pred CC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCCC
Q 020480 200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
+| .|++||+.++. ...+..+.......+|+|++..++.+...+|. |.++|+.+++ ...+..+...
T Consensus 269 ~g~~~Iy~~d~~~g~-------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~lt~~g~~ 337 (433)
T PRK04922 269 DGNPEIYVMDLGSRQ-------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERLTFQGNY 337 (433)
T ss_pred CCCceEEEEECCCCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEeecCCCC
Confidence 66 59999988653 23344455555678999998544444445555 5555655544 3333223344
Q ss_pred eeEEEeCCCCCc
Q 020480 276 VGVSILNASFRL 287 (325)
Q Consensus 276 v~~i~~~p~~~~ 287 (325)
...++|+|+|+.
T Consensus 338 ~~~~~~SpDG~~ 349 (433)
T PRK04922 338 NARASVSPDGKK 349 (433)
T ss_pred ccCEEECCCCCE
Confidence 557899999984
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=3.4e-07 Score=83.01 Aligned_cols=143 Identities=8% Similarity=0.062 Sum_probs=90.0
Q ss_pred eccCCCeeEEEecCCCCcEEEEEe---cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480 122 INHDGEVNRARYMPQNPFLIATKT---VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
..+...+...+|+|+| +.||..+ .+..|.+|++.. +....+..+.+ .+....|+|++..++++.+
T Consensus 195 t~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~--------G~~~~l~~~~~---~~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 195 HRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN--------GAVRQVASFPR---HNGAPAFSPDGSKLAFALS 262 (429)
T ss_pred ecCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCC--------CCeEEccCCCC---CcCCeEECCCCCEEEEEEc
Confidence 3466789999999999 4555433 245799999876 32222222333 3456899999994444545
Q ss_pred CCC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE--EccCCCCCCCeeEeeccCC
Q 020480 199 DDA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQS 274 (325)
Q Consensus 199 ~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~h~~ 274 (325)
.+| .|++||+.++. ...+..+...+...+|+|++..++.+...++...|| |+.++. ...+..+..
T Consensus 263 ~~g~~~I~~~d~~tg~-------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~ 331 (429)
T PRK03629 263 KTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGS 331 (429)
T ss_pred CCCCcEEEEEECCCCC-------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCC
Confidence 555 48889998652 223333445677899999985444444445555666 454443 344433444
Q ss_pred CeeEEEeCCCCCc
Q 020480 275 EVGVSILNASFRL 287 (325)
Q Consensus 275 ~v~~i~~~p~~~~ 287 (325)
......|+|+|+.
T Consensus 332 ~~~~~~~SpDG~~ 344 (429)
T PRK03629 332 QNQDADVSSDGKF 344 (429)
T ss_pred CccCEEECCCCCE
Confidence 5667899999984
No 238
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.92 E-value=9.4e-08 Score=84.76 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=104.9
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480 138 PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL 217 (325)
Q Consensus 138 ~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 217 (325)
...++-|...|.|.+|++.. +.......-..|.+.|..+.|+.+-. .|.|++.|+.+..|+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~--------g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~------ 134 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAG--------GEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEK------ 134 (541)
T ss_pred ceEEEeecCCccEEEEEecC--------CeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccc------
Confidence 35788899999999999987 33322222247899999999998776 8999999999999999887
Q ss_pred cceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCC
Q 020480 218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNAS 284 (325)
Q Consensus 218 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~ 284 (325)
..++.+.+....+.+++.+|++ ..+++++ +.|++||+.+.+. +..+.+|.++|++++|--.
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~kev---v~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKEV---VITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred eeeeeeccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCceE---EEEecCCCcceEEEEEEEe
Confidence 4577778888899999999997 4776665 5799999999995 8999999999999999765
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=8.5e-08 Score=86.96 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=91.3
Q ss_pred ccCCCeeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
.+...+.+.+|+|+| +.|+..+. ...|.+||+.. +.. ..+....+.+....|+|++..++++.+.
T Consensus 193 ~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~--------g~~---~~l~~~~g~~~~~~~SPDG~~la~~~~~ 260 (427)
T PRK02889 193 SSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLAT--------GRR---RVVANFKGSNSAPAWSPDGRTLAVALSR 260 (427)
T ss_pred cCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCC--------CCE---EEeecCCCCccceEECCCCCEEEEEEcc
Confidence 466788899999999 56665543 24699999976 222 2233334456689999999844456788
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
+|...||.+..... ....+..+........|+|+|..+++++..+|...+|.+..... ....+..........
T Consensus 261 ~g~~~Iy~~d~~~~-----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~lt~~g~~~~~~ 333 (427)
T PRK02889 261 DGNSQIYTVNADGS-----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRVTFTGSYNTSP 333 (427)
T ss_pred CCCceEEEEECCCC-----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEEecCCCCcCce
Confidence 88877776543211 13334445555667889999864544544567777887653221 123322223334567
Q ss_pred EeCCCCCc
Q 020480 280 ILNASFRL 287 (325)
Q Consensus 280 ~~~p~~~~ 287 (325)
+|+|+|+.
T Consensus 334 ~~SpDG~~ 341 (427)
T PRK02889 334 RISPDGKL 341 (427)
T ss_pred EECCCCCE
Confidence 89999984
No 240
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=3.7e-08 Score=83.89 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=95.9
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC----------------CCC------------CCCCc
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP----------------LDG------------ACSPD 171 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~----------------~~~------------~~~~~ 171 (325)
....|.+.|.++.|+|++ ++|++-+.| ..+||+......... .+. ....+
T Consensus 181 ~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v 258 (398)
T KOG0771|consen 181 EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGV 258 (398)
T ss_pred hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCce
Confidence 356799999999999999 799998989 999999987511000 000 00000
Q ss_pred EE--E--------------ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEe
Q 020480 172 LR--L--------------RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW 235 (325)
Q Consensus 172 ~~--~--------------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 235 (325)
.. + ..-...|++++.+++|. +++.|+.||.|.|++....+. .....+.|...|+.+.|
T Consensus 259 ~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~-----~~~vk~aH~~~VT~ltF 332 (398)
T KOG0771|consen 259 RLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQR-----LQYVKEAHLGFVTGLTF 332 (398)
T ss_pred eEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceeee-----eEeehhhheeeeeeEEE
Confidence 00 0 00123689999999999 999999999999999987642 22334679999999999
Q ss_pred ecCCCcEEEEEecCCcEEEEEccC
Q 020480 236 HLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 236 ~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
+|+. +++++-+.|....|.-+..
T Consensus 333 ~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 333 SPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCc-CcccccccCCceeEEEEee
Confidence 9985 7888888888888877765
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=2.5e-08 Score=86.42 Aligned_cols=171 Identities=16% Similarity=0.213 Sum_probs=123.1
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCC---ceEEEEecCCCCCe
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHST---EGYGLSWSKFKEGH 193 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~---~v~~l~~~p~~~~~ 193 (325)
......|.++|.-++.-|..++-|.+++.|+.|.-+|++... ........ .+.. ...+++..|...+.
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~--------pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV--------PAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCC--------ccceeeeeccCCccceeeeeEecCCCCccc
Confidence 345567999999999999998999999999999999998721 11122222 2333 56889999999889
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCc-------------------c-------------------------------------
Q 020480 194 LLSGSDDAQICLWDINAAPKNKS-------------------L------------------------------------- 217 (325)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~-------------------~------------------------------------- 217 (325)
+++|+.|..+++||.+...+... +
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 99999999999999765422100 0
Q ss_pred ----c-ceEeeecCCc--cEEEEEee-cCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--
Q 020480 218 ----E-AMQIFKVHEG--VVEDVAWH-LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-- 287 (325)
Q Consensus 218 ----~-~~~~~~~~~~--~v~~v~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-- 287 (325)
. ..+.+++|.+ .|..+-|- |. ..++++|+.=|.|.||+-.+.+. +..+++-..-|+||.=+|.-.+
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPr-sEyVvSGSDCGhIFiW~K~t~ei---i~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPR-SEYVVSGSDCGHIFIWDKKTGEI---IRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCc-cceEEecCccceEEEEecchhHH---HHHhhcccceEeccCCCCCCchhh
Confidence 0 0112455543 35555543 43 46888998889999999888773 6666665668999999998775
Q ss_pred cCCCCceEEeeec
Q 020480 288 SHEDTCTCTHRHS 300 (325)
Q Consensus 288 ~~~~d~~~~~~~~ 300 (325)
+.|-|..+++|.-
T Consensus 453 sSGid~DVKIWTP 465 (559)
T KOG1334|consen 453 SSGIDHDVKIWTP 465 (559)
T ss_pred ccCCccceeeecC
Confidence 7788999999964
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.88 E-value=3.8e-07 Score=82.66 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=92.9
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
..+...+...+|+|+| +.|+.+... ..|++|++.. +. ...+..+...+..++|+|++..++++.+
T Consensus 186 ~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~--------g~---~~~~~~~~~~~~~~~~spDg~~l~~~~~ 253 (417)
T TIGR02800 186 TRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLAT--------GQ---REKVASFPGMNGAPAFSPDGSKLAVSLS 253 (417)
T ss_pred ecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCC--------CC---EEEeecCCCCccceEECCCCCEEEEEEC
Confidence 3466678889999999 566655433 4799999876 22 2233345556677999999985555666
Q ss_pred CCC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC--cEEEEEccCCCCCCCeeEeeccCC
Q 020480 199 DDA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQS 274 (325)
Q Consensus 199 ~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~ 274 (325)
.++ .|++||+.++. ...+..+.......+|+|++..++++...++ .|.++|+.+++ ...+..+..
T Consensus 254 ~~~~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 254 KDGNPDIYVMDLDGKQ-------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred CCCCccEEEEECCCCC-------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 555 48888887652 2233334444456789998854444444444 46677776654 344444556
Q ss_pred CeeEEEeCCCCCc
Q 020480 275 EVGVSILNASFRL 287 (325)
Q Consensus 275 ~v~~i~~~p~~~~ 287 (325)
.+..+.|+|+|..
T Consensus 323 ~~~~~~~spdg~~ 335 (417)
T TIGR02800 323 YNASPSWSPDGDL 335 (417)
T ss_pred CccCeEECCCCCE
Confidence 6778899999984
No 243
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.86 E-value=1.1e-08 Score=100.76 Aligned_cols=159 Identities=18% Similarity=0.288 Sum_probs=121.1
Q ss_pred EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (325)
Q Consensus 117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 196 (325)
-..+..+. ..|+.+.|+.+| +.+..+..||.+.+|.... ++....+.|....+++.|-. . .+++
T Consensus 2244 ~~~rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p-----------k~~~s~qchnk~~~Df~Fi~--s-~~~t 2307 (2439)
T KOG1064|consen 2244 VCFRTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP-----------KPYTSWQCHNKALSDFRFIG--S-LLAT 2307 (2439)
T ss_pred EEeeccCc-chhhhhhhcccC-CceeeeccCCceeecccCC-----------cceeccccCCccccceeeee--h-hhhc
Confidence 33333444 889999999999 6888889999999999875 66777888999999999875 3 6777
Q ss_pred Ee---CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480 197 GS---DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 197 ~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
++ .++.+.+||....... ..++ .+|.+.++++++.|.. .+|++||.+|.|++||+|..+. .+.++.
T Consensus 2308 ag~s~d~~n~~lwDtl~~~~~---s~v~--~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql---~h~~~~-- 2376 (2439)
T KOG1064|consen 2308 AGRSSDNRNVCLWDTLLPPMN---SLVH--TCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQL---RHTFQA-- 2376 (2439)
T ss_pred cccCCCCCcccchhcccCccc---ceee--eecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHH---HHHhhh--
Confidence 64 4688999998765432 2344 7899999999999986 6999999999999999998773 555443
Q ss_pred CCeeEEEeCCCCC-ccCCCCceEEeeeccee--eeccCe
Q 020480 274 SEVGVSILNASFR-LSHEDTCTCTHRHSRYL--LYKFPF 309 (325)
Q Consensus 274 ~~v~~i~~~p~~~-~~~~~d~~~~~~~~~~~--~~~~~~ 309 (325)
++.... ++++..|.+++|.+..+ ++.+|.
T Consensus 2377 -------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 -------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred -------hhhhheeeccCcccceEEEEccccchhhcCch
Confidence 332222 37888999999987664 344443
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=7.9e-07 Score=80.48 Aligned_cols=149 Identities=11% Similarity=0.091 Sum_probs=83.7
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCC--eE--EEEeCCCCCCCCCCCCC-CCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSA--EV--YVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg--~v--~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
..+.....+|+|+|..++++...+| .+ .+|++.. +. ..+.....++.......+|+|+|..++++..
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~--------g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET--------GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc--------CCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC
Confidence 3445566899999954444443333 33 3356543 11 1122222222234467899999994444444
Q ss_pred CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC--CcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v 276 (325)
.+|...+|.+...... .....+..+...+...+|+|+|..++.++..+ ..|.+||+.+++ ...+......+
T Consensus 301 ~~g~~~ly~~~~~~~g---~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----~~~Lt~~~~~~ 373 (428)
T PRK01029 301 KDGRPRIYIMQIDPEG---QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----DYQLTTSPENK 373 (428)
T ss_pred CCCCceEEEEECcccc---cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC----eEEccCCCCCc
Confidence 6776566644321100 11223334445667889999985444344333 368999998876 33443333456
Q ss_pred eEEEeCCCCCc
Q 020480 277 GVSILNASFRL 287 (325)
Q Consensus 277 ~~i~~~p~~~~ 287 (325)
....|+|+|+.
T Consensus 374 ~~p~wSpDG~~ 384 (428)
T PRK01029 374 ESPSWAIDSLH 384 (428)
T ss_pred cceEECCCCCE
Confidence 78999999983
No 245
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=2.8e-08 Score=82.70 Aligned_cols=146 Identities=18% Similarity=0.272 Sum_probs=104.3
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
..+.|.++.|...+ +++..|+.+|.|...|++.... +...+...+ -|.+.|+++..-......|++.+.+|.|
T Consensus 251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnq-----G~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gki 323 (425)
T KOG2695|consen 251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQ-----GNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKI 323 (425)
T ss_pred cchhHHHHHhcccC-CeeEecccCCcEEEEEeeeccc-----CCCcceEEE-EcCcchhhhhhhccccceEeeccCcCce
Confidence 45778889998877 6999999999999999987311 223333333 5889999998776333389999999999
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEe--ecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee----ccCCCee
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW--HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV----AHQSEVG 277 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~ 277 (325)
++||+|..+.. ..+.++.+|.+.-.-+-+ ++.. ..++++++|...|||.++.+.. +.++. +....+.
T Consensus 324 kLyD~R~~K~~---~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghL---l~tipf~~s~~e~d~~ 396 (425)
T KOG2695|consen 324 KLYDLRATKCK---KSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHL---LCTIPFPYSASEVDIP 396 (425)
T ss_pred eEeeehhhhcc---cceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCce---eeccCCCCcccccccc
Confidence 99999976432 237788888654333333 3433 5788899999999999998873 44442 1223567
Q ss_pred EEEeCC
Q 020480 278 VSILNA 283 (325)
Q Consensus 278 ~i~~~p 283 (325)
+++|..
T Consensus 397 sv~~~s 402 (425)
T KOG2695|consen 397 SVAFDS 402 (425)
T ss_pred ceehhc
Confidence 777764
No 246
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1.4e-07 Score=87.18 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=111.0
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (325)
Q Consensus 128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd 207 (325)
-..+.+++.+ .+.+. ..+..+.+|...... .. ......-..|+-.+++.+++|.+. .+++|..||.|.+|.
T Consensus 163 ~~~I~~~~~g-e~~~i-~~~~~~~~~~v~~~~-~~-----~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~ 233 (792)
T KOG1963|consen 163 PKSIVDNNSG-EFKGI-VHMCKIHIYFVPKHT-KH-----TSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWR 233 (792)
T ss_pred CccEEEcCCc-eEEEE-EEeeeEEEEEecccc-ee-----eccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEe
Confidence 3567888877 34444 445578888887611 00 000111235777789999999999 899999999999996
Q ss_pred CCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480 208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 287 (325)
--...... ...+.+.-|...|.+++|+++| .+|.|||..|.+.+|.+.+++. +-+..-.++|..+.++|++.+
T Consensus 234 d~~~~~~~--~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k----qfLPRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 234 DFGSSDDS--ETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK----QFLPRLGSPILHIVVSPDSDL 306 (792)
T ss_pred cccccccc--ccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc----ccccccCCeeEEEEEcCCCCe
Confidence 44311110 2355677799999999999998 5888999999999999999883 445667889999999999985
Q ss_pred --cCCCCceEEee
Q 020480 288 --SHEDTCTCTHR 298 (325)
Q Consensus 288 --~~~~d~~~~~~ 298 (325)
..-.|..+.+-
T Consensus 307 ~sl~~~DNqI~li 319 (792)
T KOG1963|consen 307 YSLVLEDNQIHLI 319 (792)
T ss_pred EEEEecCceEEEE
Confidence 33445555553
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.81 E-value=9.1e-07 Score=80.17 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=87.6
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE-eC
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG-SD 199 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~ 199 (325)
.+.+.+.+++|+|++..++++.+.++ .|++|++.. + ....+..+........|+|++. .|+.+ ..
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--------~---~~~~l~~~~~~~~~~~~s~dg~-~l~~~s~~ 298 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--------K---QLTRLTNGPGIDTEPSWSPDGK-SIAFTSDR 298 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC--------C---CEEECCCCCCCCCCEEECCCCC-EEEEEECC
Confidence 35566778899999955555555554 588888875 2 1233344444455778999998 55544 44
Q ss_pred CC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC---cEEEEEccCCCCCCCeeEeeccCC
Q 020480 200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQS 274 (325)
Q Consensus 200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~ 274 (325)
++ .|.++|+..+. ...+..+...+....|+|++ ..++.++.++ .|.+||+.++. ...+... .
T Consensus 299 ~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~~-~ 365 (417)
T TIGR02800 299 GGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGG----ERVLTDT-G 365 (417)
T ss_pred CCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCC----eEEccCC-C
Confidence 44 47777776542 22333344566788999998 4666666555 78888887754 3333222 2
Q ss_pred CeeEEEeCCCCCc
Q 020480 275 EVGVSILNASFRL 287 (325)
Q Consensus 275 ~v~~i~~~p~~~~ 287 (325)
......|+|+|+.
T Consensus 366 ~~~~p~~spdg~~ 378 (417)
T TIGR02800 366 LDESPSFAPNGRM 378 (417)
T ss_pred CCCCceECCCCCE
Confidence 3445689999873
No 248
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.81 E-value=8.1e-07 Score=79.49 Aligned_cols=191 Identities=17% Similarity=0.254 Sum_probs=120.7
Q ss_pred CCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEE----ecCCeE----EEEeCCCCCCCCCCCCCCCCcE-EEecCCC
Q 020480 109 FGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATK----TVSAEV----YVFDYSKHPSKPPLDGACSPDL-RLRGHST 179 (325)
Q Consensus 109 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g----~~dg~v----~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~ 179 (325)
+....++++....+.......++.|+...++.+.+- +.+|.+ .+|++.. .+.+.+. +-....+
T Consensus 189 ~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r--------~klqrvsvtsipL~s 260 (545)
T PF11768_consen 189 LSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR--------NKLQRVSVTSIPLPS 260 (545)
T ss_pred EEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec--------CceeEEEEEEEecCC
Confidence 333455777777777777778889997655555543 334433 3566654 2122221 1225778
Q ss_pred ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
.+.+.+++|+.. .++.|+.||+|.+||...+ +..+....-..+.++|||+| .++++|+..|.+.+||+.-
T Consensus 261 ~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~--------~t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 261 QVICCARSPSED-KLVLGCEDGSIILYDTTRG--------VTLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cceEEecCcccc-eEEEEecCCeEEEEEcCCC--------eeeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeec
Confidence 999999999998 8999999999999999765 22333345567889999997 6999999999999999864
Q ss_pred CCC--------CCC--eeEe---eccCCCeeEEEeCCCCCccCCCCceEE-eeecceeeeccCeeEEEeecC
Q 020480 260 PSV--------SKP--VQSV---VAHQSEVGVSILNASFRLSHEDTCTCT-HRHSRYLLYKFPFFVLVFPLF 317 (325)
Q Consensus 260 ~~~--------~~~--~~~~---~~h~~~v~~i~~~p~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 317 (325)
... ..| +..+ ..+...+..+.|++...++........ .-.+-....+-|...+.|.+.
T Consensus 331 spi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G 402 (545)
T PF11768_consen 331 SPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLG 402 (545)
T ss_pred CccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeec
Confidence 321 011 1111 234556778888865544211111111 122334456677666666543
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=1.5e-06 Score=79.14 Aligned_cols=140 Identities=15% Similarity=0.122 Sum_probs=82.3
Q ss_pred CCCeeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA- 201 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg- 201 (325)
.+.+....|+|+|..++++...+| .|+++|+.+ + ....+..+........|+|++..++++...+|
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--------~---~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~ 310 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--------R---QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGK 310 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC--------C---CeEEcccCCCCcCCeEECCCCCEEEEEECCCCC
Confidence 344557899999954444555555 688888876 2 22334445555667899999984445544444
Q ss_pred -cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC--cEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480 202 -QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVGV 278 (325)
Q Consensus 202 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 278 (325)
.|.++|+..+.. ..+..........+|+|++..++++...++ .|.++|+.++. ...+. +......
T Consensus 311 ~~iy~~d~~~g~~-------~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~----~~~lt-~~~~~~~ 378 (430)
T PRK00178 311 PQIYKVNVNGGRA-------ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS----VRILT-DTSLDES 378 (430)
T ss_pred ceEEEEECCCCCE-------EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC----EEEcc-CCCCCCC
Confidence 466667765421 111111222345789999854444443344 47888988765 23322 1222235
Q ss_pred EEeCCCCCc
Q 020480 279 SILNASFRL 287 (325)
Q Consensus 279 i~~~p~~~~ 287 (325)
..|+|+|+.
T Consensus 379 p~~spdg~~ 387 (430)
T PRK00178 379 PSVAPNGTM 387 (430)
T ss_pred ceECCCCCE
Confidence 689999984
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=2.4e-06 Score=77.96 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=80.3
Q ss_pred CCeeEEEecCCCCcEEEEEecCCe--EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc-
Q 020480 126 GEVNRARYMPQNPFLIATKTVSAE--VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ- 202 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~- 202 (325)
+......|+|+|..++++.+.+|. |+++|+.. + ....+..+........|+|++..+++++..++.
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t--------g---~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~ 330 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT--------K---ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKP 330 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC--------C---CeEECccCCCCccceEECCCCCEEEEEECCCCCc
Confidence 344578999999655556666775 67777765 2 133344455556788999999854455544554
Q ss_pred -EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 203 -ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 203 -i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
|.++|+.++.. ..+..........+|+|++..++++...++. |.++|+.++. ...+... ......
T Consensus 331 ~Iy~~dl~~g~~-------~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----~~~lt~~-~~d~~p 398 (448)
T PRK04792 331 QIYRVNLASGKV-------SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA----MQVLTST-RLDESP 398 (448)
T ss_pred eEEEEECCCCCE-------EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC----eEEccCC-CCCCCc
Confidence 55556655421 1121122223456899998655555444554 4456766655 2332211 122245
Q ss_pred EeCCCCCc
Q 020480 280 ILNASFRL 287 (325)
Q Consensus 280 ~~~p~~~~ 287 (325)
.|+|+|+.
T Consensus 399 s~spdG~~ 406 (448)
T PRK04792 399 SVAPNGTM 406 (448)
T ss_pred eECCCCCE
Confidence 79999984
No 251
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=6.2e-08 Score=80.72 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=102.3
Q ss_pred EEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe
Q 020480 143 TKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI 222 (325)
Q Consensus 143 ~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 222 (325)
+.+.+-.|-+-++.+ .....+. ..+-|.++.|...++ +++.|..+|.|...|+|....+.. .+.+.
T Consensus 229 s~G~sqqv~L~nvet-----------g~~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~-~~a~r 294 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVET-----------GHQQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNG-WCAQR 294 (425)
T ss_pred cccccceeEEEEeec-----------ccccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCC-cceEE
Confidence 334455677777766 1122233 456788899988777 899999999999999998744322 23333
Q ss_pred eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC--C-CCC-ccCCCCceEEee
Q 020480 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN--A-SFR-LSHEDTCTCTHR 298 (325)
Q Consensus 223 ~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~--p-~~~-~~~~~d~~~~~~ 298 (325)
+. |.+.|+++..-...+.+|++.+.+|+|++||+|..++.+.+..+.+|-..-.-+-++ + .|. +++|+|+..++|
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 33 788899887665334688899999999999999988767788888885433323332 2 232 389999999999
Q ss_pred ecc
Q 020480 299 HSR 301 (325)
Q Consensus 299 ~~~ 301 (325)
.++
T Consensus 374 sl~ 376 (425)
T KOG2695|consen 374 SLD 376 (425)
T ss_pred ecc
Confidence 876
No 252
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=7.3e-08 Score=55.61 Aligned_cols=38 Identities=21% Similarity=0.558 Sum_probs=35.0
Q ss_pred cceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480 218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256 (325)
Q Consensus 218 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd 256 (325)
+++..+.+|...|++++|+|++ .+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 3578899999999999999986 7999999999999997
No 253
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=3.8e-07 Score=77.48 Aligned_cols=161 Identities=17% Similarity=0.112 Sum_probs=107.4
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw 206 (325)
....+..++.+ .++|++..+....++++...+. ..+...... -...-+++.+..... ....+..-|-++-+
T Consensus 64 a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~------~~kl~~~~~-v~~~~~ai~~~~~~~-sv~v~dkagD~~~~ 134 (390)
T KOG3914|consen 64 APALVLTSDSG-RLVAVATSSKQRAVFDYRENPK------GAKLLDVSC-VPKRPTAISFIREDT-SVLVADKAGDVYSF 134 (390)
T ss_pred cccccccCCCc-eEEEEEeCCCceEEEEEecCCC------cceeeeEee-cccCcceeeeeeccc-eEEEEeecCCceee
Confidence 44455677777 7999988888888888876221 011121111 122233444444444 34444444444444
Q ss_pred eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCCCC
Q 020480 207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNASF 285 (325)
Q Consensus 207 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~ 285 (325)
|+-.... .+....-+|-+-+++|+|+|++ .+++++..|..||+-....... +..+ -+|+.-|..++.-++.
T Consensus 135 di~s~~~----~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~---IesfclGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 135 DILSADS----GRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFV---IESFCLGHKEFVSTISLTDNY 206 (390)
T ss_pred eeecccc----cCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccc---hhhhccccHhheeeeeeccCc
Confidence 4433221 1344567899999999999997 6889999999999988776553 5554 6799999999999988
Q ss_pred C-ccCCCCceEEeeecceee
Q 020480 286 R-LSHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 286 ~-~~~~~d~~~~~~~~~~~~ 304 (325)
. +++|+|+++++|+++...
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred eeeecCCCCcEEEEecccCC
Confidence 7 599999999999986643
No 254
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.68 E-value=2e-06 Score=69.64 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=91.8
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC--ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST--EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL 217 (325)
Q Consensus 140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 217 (325)
.+..++.|.++++.++.. +..+.. .|.. .+.+++.++++. ++++.+....|..|.+.....
T Consensus 130 ~~~i~sndht~k~~~~~~--------~s~~~~----~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~se---- 192 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSG--------DSNKFA----VHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESE---- 192 (344)
T ss_pred ceeeccCCcceeEEEEec--------Ccccce----eeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccc----
Confidence 466668888899888875 222211 2332 277899999998 899999999999998876532
Q ss_pred cceE-eeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe----eccCCCeeEEEeCCCCCc
Q 020480 218 EAMQ-IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV----VAHQSEVGVSILNASFRL 287 (325)
Q Consensus 218 ~~~~-~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~i~~~p~~~~ 287 (325)
.... .....+..-.+.+|+..+ ..+|++..||++.|||+|.... |.... ..|.+.+..+.|++.|.+
T Consensus 193 y~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~t--pm~~~sstrp~hnGa~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 193 YIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMAT--PMAEISSTRPHHNGAFRVCRFSLYGLL 264 (344)
T ss_pred eeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccccc--chhhhcccCCCCCCceEEEEecCCCcc
Confidence 1222 222334455678898875 6999999999999999998764 33322 458899999999997763
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=1.8e-06 Score=78.76 Aligned_cols=142 Identities=14% Similarity=0.112 Sum_probs=86.0
Q ss_pred ccCCCeeEEEecCCCCcEEEEEe-cCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 123 NHDGEVNRARYMPQNPFLIATKT-VSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~-~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
.+...+....|+|+|. .|+..+ .++ .|+++|+.. +.... +....+......|+|++..++++.+.
T Consensus 215 ~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~t--------g~~~~---lt~~~g~~~~~~wSPDG~~La~~~~~ 282 (448)
T PRK04792 215 RSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYT--------QVREK---VTSFPGINGAPRFSPDGKKLALVLSK 282 (448)
T ss_pred cCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCC--------CCeEE---ecCCCCCcCCeeECCCCCEEEEEEeC
Confidence 3455677899999994 555443 333 588888876 22222 22222334478999999955556677
Q ss_pred CCc--EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCCC
Q 020480 200 DAQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 200 dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
+|. |.++|+.++. ...+..+.......+|+|++..++++...++. |.++|+.+++ ...+......
T Consensus 283 ~g~~~Iy~~dl~tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~----~~~Lt~~g~~ 351 (448)
T PRK04792 283 DGQPEIYVVDIATKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK----VSRLTFEGEQ 351 (448)
T ss_pred CCCeEEEEEECCCCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEEecCCCC
Confidence 775 7777877542 23334444556778999998655555555555 5555665554 3333222223
Q ss_pred eeEEEeCCCCCc
Q 020480 276 VGVSILNASFRL 287 (325)
Q Consensus 276 v~~i~~~p~~~~ 287 (325)
....+|+|+|+.
T Consensus 352 ~~~~~~SpDG~~ 363 (448)
T PRK04792 352 NLGGSITPDGRS 363 (448)
T ss_pred CcCeeECCCCCE
Confidence 345789999984
No 256
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.66 E-value=1.4e-07 Score=78.18 Aligned_cols=135 Identities=10% Similarity=0.107 Sum_probs=100.9
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN 209 (325)
Q Consensus 130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~ 209 (325)
-.+|+|+| +++|+++.- .+.|-|..+ .+....+. --+.|..+.|..+....+.....++.|.+|++.
T Consensus 13 ~c~fSp~g-~yiAs~~~y-rlviRd~~t----------lq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~ 79 (447)
T KOG4497|consen 13 FCSFSPCG-NYIASLSRY-RLVIRDSET----------LQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV 79 (447)
T ss_pred ceeECCCC-Ceeeeeeee-EEEEeccch----------hhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEee
Confidence 35899998 799998765 777777765 22111111 135678899999888677778899999999998
Q ss_pred CCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480 210 AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 287 (325)
... -...+.....++.+++|+|+|..++.+..-+-.|.+|.+.+.+. ..++.-+..+..++|+|+|++
T Consensus 80 Qpe------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 80 QPE------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKGYAFHPDGQF 147 (447)
T ss_pred cce------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCceeEEECCCCce
Confidence 763 23345566778999999999988888989999999999998873 333333455688999999985
No 257
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.66 E-value=7.6e-08 Score=77.28 Aligned_cols=165 Identities=15% Similarity=0.160 Sum_probs=102.2
Q ss_pred ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCe
Q 020480 115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGH 193 (325)
Q Consensus 115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~ 193 (325)
++.... .|+++-.+-..+-.+ +.++++..||.+.+++.+.... ...... .|. .-.+.+....++ .
T Consensus 81 ~~~~~a--~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~---------~~~~i~~~~~-~~as~~~~~~~~-~ 146 (319)
T KOG4714|consen 81 PFKVLA--KNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLA---------LMSRIPSIHS-GSASRKICRHGN-S 146 (319)
T ss_pred ceeeee--ccCCCCCcccccccC-CceEecCCCceEEEEechHHHh---------hhhhcccccc-cccccceeeccc-E
Confidence 444444 344333333333334 5799999999999999875110 011111 111 112223333333 2
Q ss_pred EEEEe-----CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480 194 LLSGS-----DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS 268 (325)
Q Consensus 194 l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 268 (325)
+.++. .-+..+.|+++..+. .+..... -..|.+++-+|..++++++|+.||.+-+||.|.... |+..
T Consensus 147 i~s~~~g~~n~~d~~~a~~~~p~~t-----~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--p~S~ 218 (319)
T KOG4714|consen 147 ILSGGCGNWNAQDNFYANTLDPIKT-----LIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--PVSL 218 (319)
T ss_pred EecCCcceEeeccceeeeccccccc-----ccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccc--hHHH
Confidence 33321 123345565554321 1111111 223899999998888999999999999999999864 6778
Q ss_pred eeccCCCeeEEEeCCCCC---ccCCCCceEEeeecc
Q 020480 269 VVAHQSEVGVSILNASFR---LSHEDTCTCTHRHSR 301 (325)
Q Consensus 269 ~~~h~~~v~~i~~~p~~~---~~~~~d~~~~~~~~~ 301 (325)
+.+|+.+++-|.|+|... ++++.||.+-.|+-.
T Consensus 219 l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 219 LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 899999999999998543 599999999999865
No 258
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.65 E-value=6.5e-08 Score=55.83 Aligned_cols=37 Identities=38% Similarity=0.597 Sum_probs=34.5
Q ss_pred CcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (325)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd 207 (325)
++.++.+|.+.|.+++|+|++. +|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 3678899999999999999988 999999999999997
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.64 E-value=2.1e-07 Score=92.25 Aligned_cols=156 Identities=15% Similarity=0.240 Sum_probs=124.0
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
+-..|.++.-+|.. .+.++|+.||.|++|.... ...+..++ ...+.|+.+.|+.+|+ .+..+..||.
T Consensus 2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~----------~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGH----------GQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGD 2274 (2439)
T ss_pred ccCceeeecCCCCC-ceEEecCCCceEEEEeccC----------CCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCc
Confidence 44667778888877 4889999999999999876 22233332 2338899999999998 8999999999
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe---cCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
+.+|.+.. .+....+.|.....++.|-. .++++++ .++.+.+||..-......+. ..|.+.++++
T Consensus 2275 l~l~q~~p-------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2275 LSLWQASP-------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVL 2342 (2439)
T ss_pred eeecccCC-------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEE
Confidence 99999873 46778899999999999874 4677765 67889999987544322344 7899999999
Q ss_pred EeCCCCCc--cCCCCceEEeeeccee
Q 020480 280 ILNASFRL--SHEDTCTCTHRHSRYL 303 (325)
Q Consensus 280 ~~~p~~~~--~~~~d~~~~~~~~~~~ 303 (325)
++.|...+ +||.+|-+++||++..
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHH
Confidence 99998774 9999999999998764
No 260
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.63 E-value=5e-07 Score=76.78 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=87.1
Q ss_pred eEEEEEeccCCCeeEEEecCCCCcEEEE---EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCC
Q 020480 116 VQIIQQINHDGEVNRARYMPQNPFLIAT---KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG 192 (325)
Q Consensus 116 ~~~~~~~~h~~~v~~v~~~~~~~~~la~---g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 192 (325)
.++.........-+++.|..... .+.. ++....+.+|.... +. ..-+.||-+-+++++|+|+..
T Consensus 98 ~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~--------~~---~~~~lGhvSml~dVavS~D~~- 164 (390)
T KOG3914|consen 98 AKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSADS--------GR---CEPILGHVSMLLDVAVSPDDQ- 164 (390)
T ss_pred ceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeecccc--------cC---cchhhhhhhhhheeeecCCCC-
Confidence 33444444444445555555442 2333 33344455555443 12 223458999999999999998
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceEe-eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 262 (325)
+++++..|..|++-.....- .+.. .-+|+.-|..++.-++ ..|++||.|++|++||++++++
T Consensus 165 ~IitaDRDEkIRvs~ypa~f------~IesfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 165 FIITADRDEKIRVSRYPATF------VIESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred EEEEecCCceEEEEecCccc------chhhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCc
Confidence 89999999999998766542 2333 3569999999998875 4688999999999999999986
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=2.9e-06 Score=77.25 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=88.1
Q ss_pred eccCCCeeEEEecCCCCcEEEEEec-C--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTV-S--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~-d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
..+...+....|+|+| +.|+..+. + ..|.+|++.. +... .+....+.+....|+|++..++++.+
T Consensus 195 ~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~--------g~~~---~l~~~~g~~~~~~~SpDG~~la~~~~ 262 (430)
T PRK00178 195 LQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDT--------GRRE---QITNFEGLNGAPAWSPDGSKLAFVLS 262 (430)
T ss_pred ecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCC--------CCEE---EccCCCCCcCCeEECCCCCEEEEEEc
Confidence 3566778899999999 45554443 2 3688899876 2222 22223334557899999984445666
Q ss_pred CCC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCC
Q 020480 199 DDA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQS 274 (325)
Q Consensus 199 ~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~ 274 (325)
.+| .|.+||+.++. ...+..+........|+|++..++.+...+|. |+++|+.+++ ...+.....
T Consensus 263 ~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~----~~~lt~~~~ 331 (430)
T PRK00178 263 KDGNPEIYVMDLASRQ-------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR----AERVTFVGN 331 (430)
T ss_pred cCCCceEEEEECCCCC-------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 665 58888988653 22334444556678899998655555544554 6666666655 222221222
Q ss_pred CeeEEEeCCCCCc
Q 020480 275 EVGVSILNASFRL 287 (325)
Q Consensus 275 ~v~~i~~~p~~~~ 287 (325)
......|+|+|..
T Consensus 332 ~~~~~~~Spdg~~ 344 (430)
T PRK00178 332 YNARPRLSADGKT 344 (430)
T ss_pred CccceEECCCCCE
Confidence 3345789999884
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.62 E-value=2.1e-06 Score=71.78 Aligned_cols=164 Identities=10% Similarity=0.084 Sum_probs=112.2
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-----CCceEEEEecCCCCCeEEEE
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-----STEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~~l~s~ 197 (325)
.|+-.|+++.++.+.. .+++ ..|=.|.+|++.-.. ..-.+..++.+ +.-|++..|+|...++|+-.
T Consensus 162 aHtyhiNSIS~NsD~E-t~lS-ADdLRINLWnlei~d-------~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKE-TFLS-ADDLRINLWNLEIID-------QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred cceeEeeeeeecCccc-eEee-ccceeeeeccccccC-------CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence 5889999999999884 5555 467899999987521 11112223333 34588999999988899999
Q ss_pred eCCCcEEEEeCCCCCCCCc----------ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCee
Q 020480 198 SDDAQICLWDINAAPKNKS----------LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ 267 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 267 (325)
+..|+|++.|+|.....-. .....-|..--..|.++.|+++| +++++-. =-+|++||+..... |+.
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRD-yltvk~wD~nme~~--pv~ 308 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRD-YLTVKLWDLNMEAK--PVE 308 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEec-cceeEEEeccccCC--cce
Confidence 9999999999995421100 00011122223578899999987 6776544 36899999976654 677
Q ss_pred EeeccC------------CCe---eEEEeCCCCC--ccCCCCceEEeee
Q 020480 268 SVVAHQ------------SEV---GVSILNASFR--LSHEDTCTCTHRH 299 (325)
Q Consensus 268 ~~~~h~------------~~v---~~i~~~p~~~--~~~~~d~~~~~~~ 299 (325)
++.-|. ..| ..++|+-++. ++|++....++++
T Consensus 309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 776663 222 3477887765 4888888888876
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.62 E-value=1.8e-06 Score=72.19 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=129.0
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
.+.+++++.+.+.- ..|++|-..|++.-+.+...- .+....+....|...+..+-|+.... ++++.+.|..+
T Consensus 67 mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedf------nkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~ 138 (404)
T KOG1409|consen 67 MPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDF------NKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQF 138 (404)
T ss_pred CCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhh------hhcchhhhhhhhhcceeeEEecCCce-eEEEeccccce
Confidence 46889999999977 789999999999999887521 22344556678888999998887766 78887777665
Q ss_pred EEEeCCCCCCC-----------------------------------CcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480 204 CLWDINAAPKN-----------------------------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (325)
Q Consensus 204 ~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~ 248 (325)
.---.+.+... ....++..+.+|.+.+.+++|.|.. .++.+|..
T Consensus 139 ~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~ 217 (404)
T KOG1409|consen 139 AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGAS 217 (404)
T ss_pred EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccc
Confidence 43322222110 1224577888999999999999975 78999999
Q ss_pred CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecceee
Q 020480 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 249 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~~~ 304 (325)
|..+-+||+-..+. ....+.+|...|..+...+.-+ ++++.|+.+.+|+.....
T Consensus 218 d~~vi~wdigg~~g--~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 218 DHSVIMWDIGGRKG--TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred cCceEEEeccCCcc--eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 99999999987664 4667788999999888877544 489999999999875543
No 264
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.62 E-value=9.2e-08 Score=79.26 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=78.7
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
-..|.-+.|..+...++.....++.|.+|++.. ..-..++......+.+++|+|+|+..|.+...+-.|.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----------pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriT 117 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----------PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRIT 117 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeec----------ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEE
Confidence 345667788887767777888999999999986 2324566677788999999999987899999999999
Q ss_pred EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe
Q 020480 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG 247 (325)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~ 247 (325)
+|.+.+... ..+..-+..+..++|+|+|+ +.+-++
T Consensus 118 VWSL~t~~~-------~~~~~pK~~~kg~~f~~dg~-f~ai~s 152 (447)
T KOG4497|consen 118 VWSLNTQKG-------YLLPHPKTNVKGYAFHPDGQ-FCAILS 152 (447)
T ss_pred EEEecccee-------EEecccccCceeEEECCCCc-eeeeee
Confidence 999987522 12222334567889999984 555544
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.60 E-value=4.2e-06 Score=67.81 Aligned_cols=148 Identities=13% Similarity=0.043 Sum_probs=102.6
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (325)
Q Consensus 128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw 206 (325)
++.+.+++++ .++++.+....|..|.+... ....+. .....++.-.+..|+.... .+|+++.||++.||
T Consensus 161 ~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~--------sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 161 QNSLHYSNDP-SWGSSVGDSRRVFRYAIDDE--------SEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIY 230 (344)
T ss_pred eeeeEEcCCC-ceEEEecCCCcceEEEeCCc--------cceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEE
Confidence 8889999988 78999899999999998762 222222 3345566778999999888 89999999999999
Q ss_pred eCCCCCCCCcccceEeeecCCccEEEEEeecCCC-cEEEEEecCCcEEEEEccCCCCCCCeeEe----eccC-CCeeEEE
Q 020480 207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSV----VAHQ-SEVGVSI 280 (325)
Q Consensus 207 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~-~~v~~i~ 280 (325)
|+|....... ....+-..|++.+..+.|+|.|. .+|.-.-.-+.+++-|+|+....+.+... ..|. ..|..-.
T Consensus 231 DVR~~~tpm~-~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~ 309 (344)
T KOG4532|consen 231 DVRNMATPMA-EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN 309 (344)
T ss_pred Eecccccchh-hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence 9997643211 11222345889999999998654 24444556678999999998752211111 1122 2366667
Q ss_pred eCCCCC
Q 020480 281 LNASFR 286 (325)
Q Consensus 281 ~~p~~~ 286 (325)
|+..+.
T Consensus 310 f~~~n~ 315 (344)
T KOG4532|consen 310 FNNENE 315 (344)
T ss_pred ccCCCc
Confidence 776554
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=1.2e-05 Score=72.84 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=84.5
Q ss_pred CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-C--Cc
Q 020480 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-D--AQ 202 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-d--g~ 202 (325)
+.....+|+|+|..++.+...+|...+|.+... ........+..+...+....|+|++. .|+..+. + ..
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~-------~~g~~~~~lt~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~ 352 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID-------PEGQSPRLLTKKYRNSSCPAWSPDGK-KIAFCSVIKGVRQ 352 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECc-------ccccceEEeccCCCCccceeECCCCC-EEEEEEcCCCCcE
Confidence 344678999999544444445675555543210 00111233444455677899999998 5655443 3 36
Q ss_pred EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec--CCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD--DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
|.+||+.++.. ..+......+....|+|++..+++++.. ...|.++|+..++ ...+....+.+...+
T Consensus 353 I~v~dl~~g~~-------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~----~~~Lt~~~g~~~~p~ 421 (428)
T PRK01029 353 ICVYDLATGRD-------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK----TRKIVIGSGEKRFPS 421 (428)
T ss_pred EEEEECCCCCe-------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCcccCce
Confidence 89999987632 2223223356778999998655545543 3568888887765 333333445567788
Q ss_pred eCCCC
Q 020480 281 LNASF 285 (325)
Q Consensus 281 ~~p~~ 285 (325)
|+|..
T Consensus 422 Ws~~~ 426 (428)
T PRK01029 422 WGAFP 426 (428)
T ss_pred ecCCC
Confidence 88754
No 267
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.60 E-value=6.4e-06 Score=79.38 Aligned_cols=151 Identities=14% Similarity=0.150 Sum_probs=102.6
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceEEE-EecCCCCC-eEEEEeCC
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGL-SWSKFKEG-HLLSGSDD 200 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l-~~~p~~~~-~l~s~s~d 200 (325)
-.+.+.++..++.+ +.+|+|+.||.|++.++....... -.....+....+ .+.+.++ ++...... .++.+..-
T Consensus 1097 ~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~---~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSK---RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred cCCceEEEEeccCC-CeEEEEcCCCeEEEEEcccccccc---ceeeeeecccccCCCceEEeecccccccceeEEEEEec
Confidence 66789999999988 799999999999999987521100 000001111111 1223333 34333332 78888889
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVS 279 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i 279 (325)
+.|..||+++....+.+ ......+.|++++.+|.+ +.++.|+..|.+-+||+|-+. ++.+. .++..++..+
T Consensus 1173 ~~iv~~D~r~~~~~w~l----k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~---~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRL----KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRV---PILSWEHPARAPIRHV 1244 (1431)
T ss_pred cceEEecchhhhhHHhh----hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCc---eeecccCcccCCcceE
Confidence 99999999987543322 123345679999999976 699999999999999999877 45554 4456888888
Q ss_pred EeCCCCC
Q 020480 280 ILNASFR 286 (325)
Q Consensus 280 ~~~p~~~ 286 (325)
..+|...
T Consensus 1245 ~~~~~~~ 1251 (1431)
T KOG1240|consen 1245 WLCPTYP 1251 (1431)
T ss_pred EeeccCC
Confidence 8887544
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=6.8e-07 Score=81.37 Aligned_cols=153 Identities=13% Similarity=0.196 Sum_probs=108.0
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCC-----CCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDG-----ACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
+......|+.|+... .++|+|+.||.++|..+.+........+ ....-.++.||...|.-+.|+.+.+ .|.|+
T Consensus 12 PnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-ccccc
Confidence 455677899999876 6999999999999998876433222111 1222356789999999999999888 89999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
..+|.|.||-+-.+.-... ..-...++.|.+++|+.+| ..++..-.||.|-+=.+...+ +.--.-......
T Consensus 90 Dt~GlIiVWmlykgsW~EE----MiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNR----IwgKeLkg~~l~ 160 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEE----MINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNR----IWGKELKGQLLA 160 (1189)
T ss_pred CCCceEEEEeeecccHHHH----HhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccce----ecchhcchhecc
Confidence 9999999999877632110 1123356778999999988 577788888888777666554 222111122344
Q ss_pred EEEeCCCCC
Q 020480 278 VSILNASFR 286 (325)
Q Consensus 278 ~i~~~p~~~ 286 (325)
.+.|+++.+
T Consensus 161 hv~ws~D~~ 169 (1189)
T KOG2041|consen 161 HVLWSEDLE 169 (1189)
T ss_pred ceeecccHH
Confidence 677888766
No 269
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.57 E-value=9.3e-06 Score=72.87 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=65.7
Q ss_pred EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
.+..+..+..|.+++++|+. ..++.|+.||.|.+||... + +..+....-..+.++|+|+|. .+++|
T Consensus 252 svtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~--------~----~t~~~ka~~~P~~iaWHp~ga-i~~V~ 317 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTR--------G----VTLLAKAEFIPTLIAWHPDGA-IFVVG 317 (545)
T ss_pred EEEEEecCCcceEEecCccc-ceEEEEecCCeEEEEEcCC--------C----eeeeeeecccceEEEEcCCCc-EEEEE
Confidence 34567799999999999988 7999999999999999876 1 222223345578999999999 99999
Q ss_pred eCCCcEEEEeCCCC
Q 020480 198 SDDAQICLWDINAA 211 (325)
Q Consensus 198 s~dg~i~iwd~~~~ 211 (325)
+..|.+.+||+.-.
T Consensus 318 s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 318 SEQGELQCFDMALS 331 (545)
T ss_pred cCCceEEEEEeecC
Confidence 99999999998654
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=2.8e-05 Score=65.72 Aligned_cols=201 Identities=11% Similarity=0.125 Sum_probs=126.4
Q ss_pred EEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEE
Q 020480 64 QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIAT 143 (325)
Q Consensus 64 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~ 143 (325)
+.+.+|+.+.. +..-|+++.+.- ..+.+...+.....+..+-++|+|+. +.|.+
T Consensus 3 ~~~YiGtyT~~-~s~gI~v~~ld~------------------------~~g~l~~~~~v~~~~nptyl~~~~~~-~~LY~ 56 (346)
T COG2706 3 QTVYIGTYTKR-ESQGIYVFNLDT------------------------KTGELSLLQLVAELGNPTYLAVNPDQ-RHLYV 56 (346)
T ss_pred eEEEEeeeccc-CCCceEEEEEeC------------------------cccccchhhhccccCCCceEEECCCC-CEEEE
Confidence 45677887632 234677777752 24456666677888889999999988 45555
Q ss_pred Eec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CCCcEEEEeCCCCCCCCcccc
Q 020480 144 KTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEA 219 (325)
Q Consensus 144 g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~ 219 (325)
+.. .|.|-.|.+.... +....+.....-..+-+.++.+++++ +++++. ..|.|.++-++..... ..
T Consensus 57 v~~~~~~ggvaay~iD~~~------G~Lt~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l---~~ 126 (346)
T COG2706 57 VNEPGEEGGVAAYRIDPDD------GRLTFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSL---QP 126 (346)
T ss_pred EEecCCcCcEEEEEEcCCC------CeEEEeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCcc---cc
Confidence 433 5778777776410 22222221112223448999999999 566655 5689999999764322 12
Q ss_pred eEeeecCCcc----------EEEEEeecCCCcEEEEEe-cCCcEEEEEccCCCCCCCeeE-eeccCCCeeEEEeCCCCCc
Q 020480 220 MQIFKVHEGV----------VEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQS-VVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 220 ~~~~~~~~~~----------v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~ 287 (325)
......|.+. +....+.|++. +++++. .-..|.+|++..+... +... ...-...-+.|.|+|++++
T Consensus 127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~dg~L~-~~~~~~v~~G~GPRHi~FHpn~k~ 204 (346)
T COG2706 127 VVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDDGKLT-PADPAEVKPGAGPRHIVFHPNGKY 204 (346)
T ss_pred ceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEcccCccc-cccccccCCCCCcceEEEcCCCcE
Confidence 2222234443 77888999984 555544 5567999999966531 1111 1233556788999999995
Q ss_pred ---cCCCCceEEeeecce
Q 020480 288 ---SHEDTCTCTHRHSRY 302 (325)
Q Consensus 288 ---~~~~d~~~~~~~~~~ 302 (325)
..-.++++.+|....
T Consensus 205 aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 205 AYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEEEeccCCEEEEEEEcC
Confidence 566777888876544
No 271
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.48 E-value=5.1e-05 Score=66.94 Aligned_cols=201 Identities=10% Similarity=0.118 Sum_probs=125.4
Q ss_pred EEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEe
Q 020480 66 MILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT 145 (325)
Q Consensus 66 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~ 145 (325)
+++|+.+. +....|++++++. ..+.+.......-......++++|++. +|.+..
T Consensus 2 ~~vgsy~~-~~~~gI~~~~~d~------------------------~~g~l~~~~~~~~~~~Ps~l~~~~~~~-~LY~~~ 55 (345)
T PF10282_consen 2 LYVGSYTN-GKGGGIYVFRFDE------------------------ETGTLTLVQTVAEGENPSWLAVSPDGR-RLYVVN 55 (345)
T ss_dssp EEEEECCS-SSSTEEEEEEEET------------------------TTTEEEEEEEEEESSSECCEEE-TTSS-EEEEEE
T ss_pred EEEEcCCC-CCCCcEEEEEEcC------------------------CCCCceEeeeecCCCCCceEEEEeCCC-EEEEEE
Confidence 56777765 4556788888741 245677766666667777889999884 555544
Q ss_pred c----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CCCcEEEEeCCCCCCCCcccce
Q 020480 146 V----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAM 220 (325)
Q Consensus 146 ~----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~ 220 (325)
. +|.|..|.+.... +....+............++.+|++. +|+++. .+|.|.++++....... ...
T Consensus 56 e~~~~~g~v~~~~i~~~~------g~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~~l~~~g~l~--~~~ 126 (345)
T PF10282_consen 56 EGSGDSGGVSSYRIDPDT------GTLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVFPLDDDGSLG--EVV 126 (345)
T ss_dssp TTSSTTTEEEEEEEETTT------TEEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSEEE--EEE
T ss_pred ccccCCCCEEEEEECCCc------ceeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEEEccCCcccc--eee
Confidence 4 6799999887610 12233334443445567899999999 555554 68999999998742211 111
Q ss_pred Eeee----------cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-CCCeeEe-eccCCCeeEEEeCCCCCc-
Q 020480 221 QIFK----------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSV-VAHQSEVGVSILNASFRL- 287 (325)
Q Consensus 221 ~~~~----------~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-~~h~~~v~~i~~~p~~~~- 287 (325)
..+. .......++.++|++..++++.-....|++|++..... ..+...+ .......+.++|+|++++
T Consensus 127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~ 206 (345)
T PF10282_consen 127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYA 206 (345)
T ss_dssp EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEE
T ss_pred eecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEE
Confidence 1111 12345778999999866666666677899999987652 1111222 223456789999999984
Q ss_pred --cCCCCceEEeeecc
Q 020480 288 --SHEDTCTCTHRHSR 301 (325)
Q Consensus 288 --~~~~d~~~~~~~~~ 301 (325)
....++++.++++.
T Consensus 207 Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 207 YVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEecCCCCcEEEEeec
Confidence 55566677776554
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=9.8e-05 Score=66.65 Aligned_cols=139 Identities=9% Similarity=0.114 Sum_probs=81.9
Q ss_pred cCCCeeEEEecCCCCcEEEEEecC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
..+......|+|+|..++++.+.+ ..|.++++.. +. ...+..+........|+|+|..++++....+
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~--------g~---~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g 299 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT--------KT---LTQITNYPGIDVNGNFVEDDKRIVFVSDRLG 299 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC--------Cc---EEEcccCCCccCccEECCCCCEEEEEECCCC
Confidence 556666788999996565555444 4677778765 22 2233333333345689999985555555555
Q ss_pred --cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC--------CcEEEEEccCCCCCCCeeEeec
Q 020480 202 --QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--------QYLLIWDLRTPSVSKPVQSVVA 271 (325)
Q Consensus 202 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~ 271 (325)
.|.+.|+..+.. ..+ ++.+. ....|+|+|..++++.... ..|.+.|+.++. ...+..
T Consensus 300 ~~~Iy~~dl~~g~~----~rl-t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----~~~LT~ 366 (419)
T PRK04043 300 YPNIFMKKLNSGSV----EQV-VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----IRRLTA 366 (419)
T ss_pred CceEEEEECCCCCe----EeC-ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----eEECCC
Confidence 466667765532 111 11111 1248999986555555433 357788887765 333332
Q ss_pred cCCCeeEEEeCCCCCc
Q 020480 272 HQSEVGVSILNASFRL 287 (325)
Q Consensus 272 h~~~v~~i~~~p~~~~ 287 (325)
. .......|+|+|+.
T Consensus 367 ~-~~~~~p~~SPDG~~ 381 (419)
T PRK04043 367 N-GVNQFPRFSSDGGS 381 (419)
T ss_pred C-CCcCCeEECCCCCE
Confidence 2 23345889999983
No 273
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.46 E-value=0.00014 Score=64.21 Aligned_cols=167 Identities=16% Similarity=0.202 Sum_probs=103.8
Q ss_pred CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
....++.|+|++..++++.-....|.+|++.... +...+...+. ........+.|+|++...+++.-.++.|.
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~------~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT------GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-------TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC------ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 4567899999995555555455689999997611 0111122222 33456789999999996667777889999
Q ss_pred EEeCCCCCCCCcccceEeeec------CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC-CCCCCeeEeeccCCCee
Q 020480 205 LWDINAAPKNKSLEAMQIFKV------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP-SVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~ 277 (325)
++++..... .+..+..... .......++++|++..++++....++|.+|++... ...+.+..+.......+
T Consensus 218 v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr 295 (345)
T PF10282_consen 218 VFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPR 295 (345)
T ss_dssp EEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEE
T ss_pred EEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCcc
Confidence 999883221 1122222211 12257889999999777777778899999999432 22223333343345589
Q ss_pred EEEeCCCCCc---cCCCCceEEeeec
Q 020480 278 VSILNASFRL---SHEDTCTCTHRHS 300 (325)
Q Consensus 278 ~i~~~p~~~~---~~~~d~~~~~~~~ 300 (325)
.++++|+|++ +.-.++.+.++++
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 9999999995 4445667777654
No 274
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6.5e-07 Score=76.20 Aligned_cols=104 Identities=20% Similarity=0.268 Sum_probs=82.9
Q ss_pred CCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480 169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (325)
Q Consensus 169 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~ 248 (325)
++...+.+|...|.+++|+|...+++..++.+..|+|.|+++. ..+..+..+ ..+++++|..+..+++..|-.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~ 256 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ 256 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc------eeeeheecc-CCceeeeeccCCcceeEEecc
Confidence 3344566788899999999999989999999999999999986 345566666 789999999998899999999
Q ss_pred CCcEEEEEccCCCCCCCeeEeec--cCCCeeEEEe
Q 020480 249 DQYLLIWDLRTPSVSKPVQSVVA--HQSEVGVSIL 281 (325)
Q Consensus 249 dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~i~~ 281 (325)
.|.|.|||+|..+. ++..+.+ ...+|..|+.
T Consensus 257 nG~VlvyD~R~~~~--~~~e~~a~~t~~pv~~i~~ 289 (463)
T KOG1645|consen 257 NGMVLVYDMRQPEG--PLMELVANVTINPVHKIAP 289 (463)
T ss_pred CceEEEEEccCCCc--hHhhhhhhhccCcceeecc
Confidence 99999999998775 4444432 2345555544
No 275
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.43 E-value=2.9e-07 Score=73.99 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=67.8
Q ss_pred CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (325)
Q Consensus 179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~ 258 (325)
..|++++-+|..++++++|+.||.+-+||.+... .+...+..|+..++.+-|||.++..|.+++.||.+-.||..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 3499999999998899999999999999999873 35667889999999999999988889999999999999987
Q ss_pred C
Q 020480 259 T 259 (325)
Q Consensus 259 ~ 259 (325)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 5
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=8.6e-05 Score=66.12 Aligned_cols=144 Identities=12% Similarity=0.149 Sum_probs=95.2
Q ss_pred EEEecCCCCcEEEEEecC-----------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE--
Q 020480 130 RARYMPQNPFLIATKTVS-----------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS-- 196 (325)
Q Consensus 130 ~v~~~~~~~~~la~g~~d-----------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s-- 196 (325)
.+.|++-|..+|+.++.| .++++.++.. ......+ ...++|+++.|+|.+.. ++.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g----------~s~~V~L-~k~GPVhdv~W~~s~~E-F~Vvy 289 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG----------ESVSVPL-LKEGPVHDVTWSPSGRE-FAVVY 289 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC----------ceEEEec-CCCCCceEEEECCCCCE-EEEEE
Confidence 567888776666655432 2566666653 1111112 24689999999999984 444
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe---cCCcEEEEEccCCCCCCCeeEeeccC
Q 020480 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
|-.-..+.|||++.. ++..+ -.++=+++-|+|.| ++++.+| -.|.+-|||+.+.+. +..+....
T Consensus 290 GfMPAkvtifnlr~~-------~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~---i~~~~a~~ 356 (566)
T KOG2315|consen 290 GFMPAKVTIFNLRGK-------PVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKL---IAKFKAAN 356 (566)
T ss_pred ecccceEEEEcCCCC-------EeEeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhh---ccccccCC
Confidence 445678999999853 34433 34566789999987 6776666 458899999999764 66666543
Q ss_pred CCeeEEEeCCCCCc----cCC----CCceEEeeec
Q 020480 274 SEVGVSILNASFRL----SHE----DTCTCTHRHS 300 (325)
Q Consensus 274 ~~v~~i~~~p~~~~----~~~----~d~~~~~~~~ 300 (325)
. +-..|+|+|++ +++ -|..+++|+.
T Consensus 357 t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 357 T--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred c--eEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 3 34789999995 222 3566777764
No 277
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.42 E-value=2e-05 Score=69.75 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=84.5
Q ss_pred cEE-EEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480 139 FLI-ATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL 217 (325)
Q Consensus 139 ~~l-a~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 217 (325)
+++ ++-..+|.|.+.|..+ .+.+.++......-..+.++|+++ ++++++.||.|.++|+.+.+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t----------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~----- 69 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGAT----------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGK----- 69 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-----------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSS-----
T ss_pred cEEEEEecCCCEEEEEECCC----------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCccc-----
Confidence 344 4556789999999887 455677765444434578999999 78888999999999999873
Q ss_pred cceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-------CCCeeEEEeCCCCC
Q 020480 218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-------QSEVGVSILNASFR 286 (325)
Q Consensus 218 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~i~~~p~~~ 286 (325)
.+..+.. ......++++++|..+++++..++.+.++|.++.+ ++..+... ...+.+|..+|...
T Consensus 70 -~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle---~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 70 -VVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE---PVKTIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp -EEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred -EEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccc---ceeecccccccccccCCCceeEEecCCCC
Confidence 4555554 34567899999996666666789999999999987 46665432 24567787777766
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=1.5e-06 Score=76.92 Aligned_cols=172 Identities=9% Similarity=0.092 Sum_probs=108.4
Q ss_pred eEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEE
Q 020480 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (325)
Q Consensus 116 ~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 195 (325)
+.+....+|+..|..+.--... +-+++++.|.+|++|.++...+.. +......++..|+.+|.++.|-.+.+ .++
T Consensus 726 irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~---~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ 800 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI---GTSACQFTYQAHKKPIHDIGFLADLR-SIA 800 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc---ccceeeeEhhhccCcccceeeeeccc-eee
Confidence 4444456788888887766544 689999999999999998643322 22234567789999999999988765 454
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceEee--ecCCccEEEEEeec--CCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--
Q 020480 196 SGSDDAQICLWDINAAPKNKSLEAMQIF--KVHEGVVEDVAWHL--RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-- 269 (325)
Q Consensus 196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 269 (325)
+.||-|++||.-.+.. +... ....+.+..+..-| +..-++|-|+...+|+++|.|..+........
T Consensus 801 --ScD~giHlWDPFigr~------Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 801 --SCDGGIHLWDPFIGRL------LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred --eccCcceeecccccch------hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 5579999999765532 1111 11112222222223 23334455588999999999998752223332
Q ss_pred eccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
.+....+.+++..|.|.. .+-..|.+.+-|.
T Consensus 873 ~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred CCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence 233456899999998874 2223344444443
No 279
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.40 E-value=6.2e-05 Score=66.71 Aligned_cols=151 Identities=10% Similarity=0.089 Sum_probs=93.4
Q ss_pred EEEEEeccCCCe-eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEE
Q 020480 117 QIIQQINHDGEV-NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (325)
Q Consensus 117 ~~~~~~~h~~~v-~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 195 (325)
+.+..+...+.+ ..+.|+|++ +++.+++.||.|.++|+.+ .+.+.++.. .....+++++++|..+++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~----------~~~v~~i~~-G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLAT----------GKVVATIKV-GGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTS----------SSEEEEEE--SSEEEEEEE--TTTEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCc----------ccEEEEEec-CCCcceEEEcCCCCEEEE
Confidence 344556554444 447789998 5777778899999999987 345666654 345688999999995555
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceEeeec-------CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKV-------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS 268 (325)
Q Consensus 196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 268 (325)
++...+.+.++|.++.+ ++..+.. ....+.++..+|.++.++++--..+.|.+-|...... ....
T Consensus 95 ~n~~~~~v~v~D~~tle------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~--~~~~ 166 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLE------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN--LKVT 166 (369)
T ss_dssp EEEETTEEEEEETTT--------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--EEEE
T ss_pred EecCCCceeEecccccc------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--ccee
Confidence 55688999999998863 3443322 2456778888887654555555568888888777643 2222
Q ss_pred eeccCCCeeEEEeCCCCCc
Q 020480 269 VVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 269 ~~~h~~~v~~i~~~p~~~~ 287 (325)
............|+|++++
T Consensus 167 ~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp EEE--TTEEEEEE-TTSSE
T ss_pred eecccccccccccCcccce
Confidence 3334556788999999984
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.40 E-value=3.3e-05 Score=67.49 Aligned_cols=143 Identities=14% Similarity=0.124 Sum_probs=107.9
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
.++|.+.|.-..+..++ .-++.|..|| .+-||+... ..+..+...-+.|.++..+|+|. .++.+..
T Consensus 355 qv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~-----------~e~kr~e~~lg~I~av~vs~dGK-~~vvaNd 421 (668)
T COG4946 355 QVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDG-----------GEVKRIEKDLGNIEAVKVSPDGK-KVVVAND 421 (668)
T ss_pred EcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCC-----------ceEEEeeCCccceEEEEEcCCCc-EEEEEcC
Confidence 45688888888888877 4889999999 999999987 22445666678899999999998 7888888
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC----cEEEEEccCCCCCCCeeEeeccCCC
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ----YLLIWDLRTPSVSKPVQSVVAHQSE 275 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~ 275 (325)
...+.+.|+.++.. ...-+...+-|+.+.|||++ ..+|-+--+| .|+++|+..++ +.......+-
T Consensus 422 r~el~vididngnv------~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~K----iy~vTT~ta~ 490 (668)
T COG4946 422 RFELWVIDIDNGNV------RLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGK----IYDVTTPTAY 490 (668)
T ss_pred ceEEEEEEecCCCe------eEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCe----EEEecCCccc
Confidence 89999999998742 22223345679999999986 6887766554 58999999887 4444333333
Q ss_pred eeEEEeCCCCCc
Q 020480 276 VGVSILNASFRL 287 (325)
Q Consensus 276 v~~i~~~p~~~~ 287 (325)
=.+-+|.|+++.
T Consensus 491 DfsPaFD~d~ry 502 (668)
T COG4946 491 DFSPAFDPDGRY 502 (668)
T ss_pred ccCcccCCCCcE
Confidence 445678888883
No 281
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=6.2e-06 Score=77.21 Aligned_cols=150 Identities=12% Similarity=0.055 Sum_probs=110.5
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-------
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD------- 199 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~------- 199 (325)
.|.-++.+. +.+.+|...|+|.+-|.++ .++++++..|++.+.+++.. |+ +|++|+.
T Consensus 179 ~v~imR~Nn---r~lf~G~t~G~V~LrD~~s----------~~~iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l 242 (1118)
T KOG1275|consen 179 GVTIMRYNN---RNLFCGDTRGTVFLRDPNS----------FETIHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNL 242 (1118)
T ss_pred ceEEEEecC---cEEEeecccceEEeecCCc----------Cceeeeeeccccceeeeecc--CC-eEEEeecccccccc
Confidence 355555543 6899999999999999988 78899999999999888775 55 8888875
Q ss_pred --CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC-CCeeEeeccCCCe
Q 020480 200 --DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPVQSVVAHQSEV 276 (325)
Q Consensus 200 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v 276 (325)
|..|+|||+|..+. +..+.-+.+ -.-+.|+|.=...+|+++..|...+-|..+.... ..+..+....+.+
T Consensus 243 ~~D~FvkVYDLRmmra------l~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i 315 (1118)
T KOG1275|consen 243 AMDPFVKVYDLRMMRA------LSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGI 315 (1118)
T ss_pred cccchhhhhhhhhhhc------cCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcc
Confidence 56689999998643 222222222 2567899987788999999999999995433321 1234444555669
Q ss_pred eEEEeCCCCCc--cCCCCceEEeee
Q 020480 277 GVSILNASFRL--SHEDTCTCTHRH 299 (325)
Q Consensus 277 ~~i~~~p~~~~--~~~~d~~~~~~~ 299 (325)
.+++++++|.+ .+..++.+.+|.
T Consensus 316 ~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 316 SAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeEEecCCCceEEEecccCcEeeec
Confidence 99999999985 566778888885
No 282
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=3.3e-05 Score=68.65 Aligned_cols=135 Identities=15% Similarity=0.250 Sum_probs=91.9
Q ss_pred EeccCCCeeEEEecCCCCcEEEE-EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480 121 QINHDGEVNRARYMPQNPFLIAT-KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~-g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
.+.-.++|.++.|+|++..+.++ |-.-..+.|||++. .++..+. .++=..+-|+|.|+ +++.++.
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----------~~v~df~--egpRN~~~fnp~g~-ii~lAGF 331 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----------KPVFDFP--EGPRNTAFFNPHGN-IILLAGF 331 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----------CEeEeCC--CCCccceEECCCCC-EEEEeec
Confidence 34568999999999998433333 44566899999986 6665553 45567899999999 5655554
Q ss_pred ---CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe------cCCcEEEEEccCCCCCCCeeEee
Q 020480 200 ---DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTPSVSKPVQSVV 270 (325)
Q Consensus 200 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~ 270 (325)
-|.|-+||+... +.+..+.+.. .+-+.|+|+|+ +|+|++ .|+.++||+..... +....
T Consensus 332 GNL~G~mEvwDv~n~------K~i~~~~a~~--tt~~eW~PdGe-~flTATTaPRlrvdNg~KiwhytG~~----l~~~~ 398 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNR------KLIAKFKAAN--TTVFEWSPDGE-YFLTATTAPRLRVDNGIKIWHYTGSL----LHEKM 398 (566)
T ss_pred CCCCCceEEEeccch------hhccccccCC--ceEEEEcCCCc-EEEEEeccccEEecCCeEEEEecCce----eehhh
Confidence 388999999875 3455555443 34578999985 666665 37889999987644 22211
Q ss_pred ccCCCeeEEEeCC
Q 020480 271 AHQSEVGVSILNA 283 (325)
Q Consensus 271 ~h~~~v~~i~~~p 283 (325)
..+....+.|-|
T Consensus 399 -f~sEL~qv~W~P 410 (566)
T KOG2315|consen 399 -FKSELLQVEWRP 410 (566)
T ss_pred -hhHhHhheeeee
Confidence 112466666665
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=1.2e-05 Score=74.05 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=106.8
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC-----------CCeEE
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK-----------EGHLL 195 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-----------~~~l~ 195 (325)
.-+++.|+|.| +||-|+.. .|.+-|... .+.+..+.-|...|+.+.|.|.. .-+++
T Consensus 17 N~~A~Dw~~~G--LiAygshs-lV~VVDs~s----------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSHS-LVSVVDSRS----------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred cccccccCccc--eEEEecCc-eEEEEehhh----------hhhhhccccCccceeEEEeccCCCchhccCccccceeEE
Confidence 35678999988 88887755 788888877 56677888899999999998742 12678
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC---CcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH---EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (325)
Q Consensus 196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 272 (325)
++...|.|.+||+..+. .+..+..|...+..++|-|.. ..+|++-....++.+|+..+++. +......
T Consensus 84 saD~~GrIil~d~~~~s------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~~ys 154 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLAS------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKYDYS 154 (1062)
T ss_pred eccccCcEEEEEehhhh------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eeccccC
Confidence 88889999999999873 344567788899999997732 25677777788999999999984 6666655
Q ss_pred CCCeeEEEeCCCCC
Q 020480 273 QSEVGVSILNASFR 286 (325)
Q Consensus 273 ~~~v~~i~~~p~~~ 286 (325)
.....|+.++|...
T Consensus 155 ~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDS 168 (1062)
T ss_pred CcceeeeeeCCCCc
Confidence 66777788888543
No 284
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.34 E-value=6.1e-07 Score=74.01 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=122.2
Q ss_pred CCCceEEEEEeccCCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCC------------CCCCCC----------
Q 020480 112 ANGKVQIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKP------------PLDGAC---------- 168 (325)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~------------~~~~~~---------- 168 (325)
.++.+...+...-...|+.+.|..++ ...+...+.|.+|++|.+.....+. ..++..
T Consensus 72 he~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lpr 151 (460)
T COG5170 72 HELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPR 151 (460)
T ss_pred cccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccc
Confidence 34455555566667789999998754 3455566889999999886531100 000000
Q ss_pred ----------CCcEEE-ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC-----CccEEE
Q 020480 169 ----------SPDLRL-RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH-----EGVVED 232 (325)
Q Consensus 169 ----------~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~ 232 (325)
.|.+.. ..|.-.+.++.++.+.. .++++ .|=.|.+|++........+ ..++.| ...|++
T Consensus 152 ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e-t~lSa-DdLrINLWnl~i~D~sFnI---VDiKP~nmeeLteVItS 226 (460)
T COG5170 152 LSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE-TLLSA-DDLRINLWNLEIIDGSFNI---VDIKPHNMEELTEVITS 226 (460)
T ss_pred ccccceEEEeccceeccccceeEeeeeeecCchh-eeeec-cceeeeeccccccCCceEE---EeccCccHHHHHHHHhh
Confidence 011111 35677788999998887 56654 4778999998876543222 222333 346888
Q ss_pred EEeecCCCcEEEEEecCCcEEEEEccCCCCC-CC--ee----------EeeccCCCeeEEEeCCCCCc-cCCCCceEEee
Q 020480 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KP--VQ----------SVVAHQSEVGVSILNASFRL-SHEDTCTCTHR 298 (325)
Q Consensus 233 v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~--~~----------~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~ 298 (325)
..|+|...+++.-.+..|.|++-|+|..... .+ +. -+..-.+.|..+.|+++|++ ..-+-.++++|
T Consensus 227 aeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiw 306 (460)
T COG5170 227 AEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIW 306 (460)
T ss_pred cccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEE
Confidence 9999988789989999999999999954310 00 11 11123457889999999986 44455799999
Q ss_pred ecceee
Q 020480 299 HSRYLL 304 (325)
Q Consensus 299 ~~~~~~ 304 (325)
++++-.
T Consensus 307 Dvnm~k 312 (460)
T COG5170 307 DVNMAK 312 (460)
T ss_pred eccccc
Confidence 987754
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.31 E-value=6.1e-05 Score=75.45 Aligned_cols=169 Identities=12% Similarity=0.036 Sum_probs=103.8
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC-CCCCCCCCc---EEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP-PLDGACSPD---LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 129 ~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~-~~~~~~~~~---~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
..++++|++..++++...++.|++|+........ ...+..... ......-.....++++|++..++++-+.++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 4689999655788888888999999986511000 000000000 000001124567999999875667777789999
Q ss_pred EEeCCCCCCCCcc-------cceEeeec--------CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480 205 LWDINAAPKNKSL-------EAMQIFKV--------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (325)
Q Consensus 205 iwd~~~~~~~~~~-------~~~~~~~~--------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 269 (325)
+||+.++...... .....+.. .-.....++++++| .++++-..++.|++||..++. +..+
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~----v~ti 840 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKR----VTTL 840 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCe----EEEE
Confidence 9998865310000 00000100 01124578899987 588888999999999998765 3333
Q ss_pred ec--------------cCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 270 VA--------------HQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 270 ~~--------------h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
.+ .-.....|+++++|++ +.+.+..+++|+...
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 21 1125678999999986 556778888888754
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=7.8e-05 Score=69.20 Aligned_cols=141 Identities=11% Similarity=0.085 Sum_probs=95.8
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC----CCCeEEEEeCCCcEEEEeCCCCC
Q 020480 137 NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----KEGHLLSGSDDAQICLWDINAAP 212 (325)
Q Consensus 137 ~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~dg~i~iwd~~~~~ 212 (325)
| .++++|+.||+|.|..+-+ . ....++ ....++.+++++|+ ....+++|+..| +.++.-+-..
T Consensus 83 G-ey~asCS~DGkv~I~sl~~--------~--~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 83 G-EYVASCSDDGKVVIGSLFT--------D--DEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred C-ceEEEecCCCcEEEeeccC--------C--ccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 5 7999999999999988866 1 212222 34568999999998 233799999988 7777544332
Q ss_pred CCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC------CeeEEEeCCCCC
Q 020480 213 KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS------EVGVSILNASFR 286 (325)
Q Consensus 213 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~------~v~~i~~~p~~~ 286 (325)
.. ..+ ......+.|.+++|. | +++|-++++| |+|||+...+. +..++.... .-..+.|.+..+
T Consensus 150 nk---~~v-~l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~~ 218 (846)
T KOG2066|consen 150 NK---DSV-VLSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQR---LTNIPPPSQSVRPELFPPHLHWQDEDR 218 (846)
T ss_pred Cc---cce-eeecCccceEEEEec--C-cEEEEecCCC-cEEEeccccce---eeccCCCCCCCCcccCCCceEecCCCe
Confidence 21 111 345567899999997 3 6888888776 89999988774 333322112 235688888888
Q ss_pred ccCCCCceEEeeecc
Q 020480 287 LSHEDTCTCTHRHSR 301 (325)
Q Consensus 287 ~~~~~d~~~~~~~~~ 301 (325)
+.-|...++++-.++
T Consensus 219 LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 219 LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEecCCeEEEEEEe
Confidence 766666677765554
No 287
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=0.0015 Score=55.56 Aligned_cols=163 Identities=10% Similarity=0.112 Sum_probs=105.5
Q ss_pred CCceEEEEEeccCCCe-eEEEecCCCCcEEEEEe-cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc----------
Q 020480 113 NGKVQIIQQINHDGEV-NRARYMPQNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE---------- 180 (325)
Q Consensus 113 ~~~~~~~~~~~h~~~v-~~v~~~~~~~~~la~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~---------- 180 (325)
++.+.++....-.+.- +.+++++++ .+++++. ..|.|.++-+... +...+...+..|.+.
T Consensus 75 ~G~Lt~ln~~~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~d-------G~l~~~v~~~~h~g~~p~~rQ~~~h 146 (346)
T COG2706 75 DGRLTFLNRQTLPGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQAD-------GSLQPVVQVVKHTGSGPHERQESPH 146 (346)
T ss_pred CCeEEEeeccccCCCCCeEEEECCCC-CEEEEEEccCceEEEEEcccC-------CccccceeeeecCCCCCCccccCCc
Confidence 3566665555443333 789999999 4666554 4689999998762 223333333345544
Q ss_pred eEEEEecCCCCCeEEEEeC-CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 181 GYGLSWSKFKEGHLLSGSD-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 181 v~~l~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
++...+.|+++ ++++.+. --.|.+|++..+.....- ...+ .-...-..|.|||+++...+.+--+++|-+|....
T Consensus 147 ~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~dg~L~~~~--~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 147 VHSANFTPDGR-YLVVPDLGTDRIFLYDLDDGKLTPAD--PAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred cceeeeCCCCC-EEEEeecCCceEEEEEcccCcccccc--cccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 89999999998 6666653 346999999966432111 1111 34567889999999976666777899999999987
Q ss_pred C-CCCCCeeEee------ccCCCeeEEEeCCCCCc
Q 020480 260 P-SVSKPVQSVV------AHQSEVGVSILNASFRL 287 (325)
Q Consensus 260 ~-~~~~~~~~~~------~h~~~v~~i~~~p~~~~ 287 (325)
. .....++.+. .-......|..+|+|++
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF 257 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF 257 (346)
T ss_pred CCceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence 4 2111222221 11345778999999996
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.12 E-value=0.00048 Score=56.75 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=98.9
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCC-----CCeEEEEeCCCc
Q 020480 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFK-----EGHLLSGSDDAQ 202 (325)
Q Consensus 129 ~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~-----~~~l~s~s~dg~ 202 (325)
..++|+|++ .+||.+...|+|++||+.....-. ..+...+. .-..+|.++.|.+.. ...|+.-..+|.
T Consensus 47 Rkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~-----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 47 RKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFV-----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred eEEEECCCC-cEEEEEcCCCeEEEEecccceeEE-----cCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 468999999 799999999999999997511000 01111111 123456666664432 235777788888
Q ss_pred EEEEeCCCCCCCCcccceEeee---cCCccEEEEEeecCCCcEEEEEe-cCC----------cEEEEEccCCCCC-----
Q 020480 203 ICLWDINAAPKNKSLEAMQIFK---VHEGVVEDVAWHLRHEYLFGSVG-DDQ----------YLLIWDLRTPSVS----- 263 (325)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~s~~-~dg----------~i~iwd~~~~~~~----- 263 (325)
++-|-+..+... .....+.+. .+...|.++.++|.. ++|+.|| ... -+..|.+-+...-
T Consensus 121 L~Sy~vs~gt~q-~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 121 LRSYLVSVGTNQ-GYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred eeeEEEEcccCC-cceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence 888876432111 011222222 246789999999987 4655555 221 2556655443210
Q ss_pred ----------------C--CeeEe---eccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee
Q 020480 264 ----------------K--PVQSV---VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 264 ----------------~--~~~~~---~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~ 304 (325)
+ .+..+ ......|..|..+|+|.+ +...+|.+.+|.+..+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 0 00000 112467889999999996 55677888888776654
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.00085 Score=60.64 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=82.5
Q ss_pred CCeeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-
Q 020480 126 GEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA- 201 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg- 201 (325)
+.+..-.|+|+|..+++..+. ...|+++|+.+ +.. ..+....+......|+|++..++++.+.++
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t--------g~~---~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT--------GKK---EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC--------CcE---EEEecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence 366788999999544554333 35788889876 222 223334455667889999986666665554
Q ss_pred -cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480 202 -QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVGV 278 (325)
Q Consensus 202 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~ 278 (325)
.|.++|+..+. ...+..+........|+|+|..++.+....+. |.+.|+.+++. ..+...... .
T Consensus 257 ~~Iy~~dl~~g~-------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----~rlt~~g~~--~ 323 (419)
T PRK04043 257 PDIYLYDTNTKT-------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----EQVVFHGKN--N 323 (419)
T ss_pred cEEEEEECCCCc-------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----EeCccCCCc--C
Confidence 57777876552 22233333323456899998666666555554 66667766552 222211111 2
Q ss_pred EEeCCCCCc
Q 020480 279 SILNASFRL 287 (325)
Q Consensus 279 i~~~p~~~~ 287 (325)
..|+|+|+.
T Consensus 324 ~~~SPDG~~ 332 (419)
T PRK04043 324 SSVSTYKNY 332 (419)
T ss_pred ceECCCCCE
Confidence 489999983
No 290
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.96 E-value=2.3e-06 Score=77.17 Aligned_cols=164 Identities=14% Similarity=0.177 Sum_probs=106.4
Q ss_pred eccCCCeeEEEecCCCCcEEEEEe----cCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceEEEEecCCCCCeEEE
Q 020480 122 INHDGEVNRARYMPQNPFLIATKT----VSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYGLSWSKFKEGHLLS 196 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s 196 (325)
-+|...+++++|++-+.+.||+|- .|..+.|||+........ ..+. +.+ ......+++|-.+.+ ++.+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk----e~~~--fs~~~l~gqns~cwlrd~k-lvla 171 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK----ESPL--FSSSTLDGQNSVCWLRDTK-LVLA 171 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc----cccc--cccccccCccccccccCcc-hhhc
Confidence 457789999999998767888873 456899999987422211 1111 111 233445889997777 8999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE-ccCCCCCCCeeEeeccC--
Q 020480 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD-LRTPSVSKPVQSVVAHQ-- 273 (325)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~h~-- 273 (325)
|.....++++|+|.... +...-.+..+..+...|-..+++++-. ||.|-+|| .+.-+. ++..+...+
T Consensus 172 Gm~sr~~~ifdlRqs~~-------~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien--pl~~i~~~~N~ 241 (783)
T KOG1008|consen 172 GMTSRSVHIFDLRQSLD-------SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN--PLQIILRNENK 241 (783)
T ss_pred ccccchhhhhhhhhhhh-------hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhcc--HHHHHhhCCCC
Confidence 99999999999995421 111122335666777785557886655 99999999 555443 455543222
Q ss_pred --CCeeEEEeCCCC--Cc--cCCCCceEEeeecce
Q 020480 274 --SEVGVSILNASF--RL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 274 --~~v~~i~~~p~~--~~--~~~~d~~~~~~~~~~ 302 (325)
..+..++|+|.. .+ ..-+.++++.++++.
T Consensus 242 ~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 242 KPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 248999999954 33 334456666665543
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.91 E-value=0.0012 Score=65.35 Aligned_cols=179 Identities=12% Similarity=0.104 Sum_probs=104.1
Q ss_pred ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCC----------CCC-C--------------C-CCC-
Q 020480 115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP----------SKP-P--------------L-DGA- 167 (325)
Q Consensus 115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~----------~~~-~--------------~-~~~- 167 (325)
.++.+. .-...|.+++|||++ .+||..+.+++|.+-+..-.+ ... + . .++
T Consensus 112 ~~E~VG--~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~ 188 (928)
T PF04762_consen 112 EIEIVG--SVDSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKA 188 (928)
T ss_pred eeEEEE--EEcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhh
Confidence 444433 346789999999998 688888888888876432110 000 0 0 000
Q ss_pred -----CCCc------EEEecCCCceEEEEecCCCCCeEEEEeC---C---CcEEEEeCCCCCCCCcccceEeeecCCccE
Q 020480 168 -----CSPD------LRLRGHSTEGYGLSWSKFKEGHLLSGSD---D---AQICLWDINAAPKNKSLEAMQIFKVHEGVV 230 (325)
Q Consensus 168 -----~~~~------~~~~~h~~~v~~l~~~p~~~~~l~s~s~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 230 (325)
..|. ..+. +.+.-..++|-.||. ++|+.+. . ..++||+-... ...+...-.+--
T Consensus 189 aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~ReG~-------L~stSE~v~gLe 259 (928)
T PF04762_consen 189 AARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSREGE-------LQSTSEPVDGLE 259 (928)
T ss_pred hhhhccCCCCCccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCCce-------EEeccccCCCcc
Confidence 0010 1122 344567899999999 7777764 3 47999997631 122222222334
Q ss_pred EEEEeecCCCcEEEEEec---CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCccC-CCCceEEeeecceeeec
Q 020480 231 EDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSH-EDTCTCTHRHSRYLLYK 306 (325)
Q Consensus 231 ~~v~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~-~~d~~~~~~~~~~~~~~ 306 (325)
.+++|.|.| ++||+... ...|.+|.-...+...-...+......|..++|++++.+.+ -....+.+|....+-|-
T Consensus 260 ~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWY 338 (928)
T PF04762_consen 260 GALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWY 338 (928)
T ss_pred CCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEE
Confidence 568999998 68877764 34466665433221100111123456799999999998621 12234888877776663
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.90 E-value=0.0011 Score=65.48 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=87.2
Q ss_pred cCCCeeEEEecCCCCcEEEEEec---C---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTV---S---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~---d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
+...-..|+|..|| .+||+.+. . ..++||+-.... ..+...-.+--..++|-|.|+ ++|+.
T Consensus 208 ~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~ReG~L-----------~stSE~v~gLe~~l~WrPsG~-lIA~~ 274 (928)
T PF04762_consen 208 WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSREGEL-----------QSTSEPVDGLEGALSWRPSGN-LIASS 274 (928)
T ss_pred cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCCceE-----------EeccccCCCccCCccCCCCCC-EEEEE
Confidence 44466689999999 68887664 2 578999976411 111111122234789999998 88887
Q ss_pred eC---CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee-ccC
Q 020480 198 SD---DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-AHQ 273 (325)
Q Consensus 198 s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~ 273 (325)
.. ...|.+|.-+.-+.+. ..-.+......|..++|++++ .+||....|. |.+|-..+..- ..-+.+. ...
T Consensus 275 q~~~~~~~VvFfErNGLrhge---F~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHW-YLKqei~~~~~ 348 (928)
T PF04762_consen 275 QRLPDRHDVVFFERNGLRHGE---FTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHW-YLKQEIRFSSS 348 (928)
T ss_pred EEcCCCcEEEEEecCCcEeee---EecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEE-EEEEEEEccCC
Confidence 64 3446666544332211 111122345679999999987 6888877655 99998877552 1112222 123
Q ss_pred CCeeEEEeCCCCC
Q 020480 274 SEVGVSILNASFR 286 (325)
Q Consensus 274 ~~v~~i~~~p~~~ 286 (325)
..+..+.|+|...
T Consensus 349 ~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 349 ESVNFVKWDPEKP 361 (928)
T ss_pred CCCCceEECCCCC
Confidence 3455588988644
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=0.00023 Score=66.03 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=91.7
Q ss_pred eEEEEEec-cCCCeeEEEecCCC-----------CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEE
Q 020480 116 VQIIQQIN-HDGEVNRARYMPQN-----------PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183 (325)
Q Consensus 116 ~~~~~~~~-h~~~v~~v~~~~~~-----------~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 183 (325)
.+.++.+. |+..|+.++|.|-. .-+||++...|.|-+||... ...+..+..|.+++.+
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~----------~s~~~~l~~~~~~~qd 114 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL----------ASVINWLSHSNDSVQD 114 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh----------hhhhhhhcCCCcchhh
Confidence 34444454 77899999998832 23688889999999999987 3445667888899999
Q ss_pred EEecCC---CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480 184 LSWSKF---KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (325)
Q Consensus 184 l~~~p~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~ 258 (325)
++|-+. .+.+|+.-....++-+|+..+|.+ +..+........++.+.|-+.+.+..-+..|.+.+-+.-
T Consensus 115 l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k------~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 115 LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK------FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred eeeeeccCcchheeEEecCCcEEEEEEccCCce------eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 998664 335788888889999999999854 444444445566788888666666666666766666543
No 294
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00015 Score=62.13 Aligned_cols=80 Identities=9% Similarity=0.198 Sum_probs=68.8
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
.|...|..++|+|....++..++.+..|+|.|+++ ...+..+..+ ..+++++|..+..+.+..|-..|.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet----------~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET----------SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEeccc----------ceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 47789999999998856889999999999999988 3345556666 789999999999989999999999
Q ss_pred EEEEeCCCCCC
Q 020480 203 ICLWDINAAPK 213 (325)
Q Consensus 203 i~iwd~~~~~~ 213 (325)
|.|||++....
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999998653
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00021 Score=66.49 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=100.3
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
....++|++++. +.|+.|+.+|.|++++... .+ .+...|+.. .-.|. +++||+.||.|
T Consensus 38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-----------~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv 95 (846)
T KOG2066|consen 38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQG-----------NP-KTNFDHSSS------ILEGE-YVASCSDDGKV 95 (846)
T ss_pred hhhHHHHHHhhc---ceeeeccccceEEEEecCC-----------cc-ccccccccc------ccCCc-eEEEecCCCcE
Confidence 345677777765 6899999999999999876 22 223345433 55677 89999999999
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecC----CCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
.|--+-+... .+.+. -..++.+++++|+ ....+++||.-| +.++.-+-.....++ .+..-.++|.++
T Consensus 96 ~I~sl~~~~~------~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i 166 (846)
T KOG2066|consen 96 VIGSLFTDDE------ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSI 166 (846)
T ss_pred EEeeccCCcc------ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEE
Confidence 9988877643 22222 3457889999996 235788999988 888876644432233 344557899999
Q ss_pred EeCCCCCccCCCCceEEeeec
Q 020480 280 ILNASFRLSHEDTCTCTHRHS 300 (325)
Q Consensus 280 ~~~p~~~~~~~~d~~~~~~~~ 300 (325)
.|.-+-...++++ .+++++.
T Consensus 167 ~W~g~lIAWand~-Gv~vyd~ 186 (846)
T KOG2066|consen 167 KWRGNLIAWANDD-GVKVYDT 186 (846)
T ss_pred EecCcEEEEecCC-CcEEEec
Confidence 9987665555444 4566554
No 296
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.83 E-value=0.0019 Score=65.11 Aligned_cols=156 Identities=10% Similarity=0.082 Sum_probs=97.4
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-----------------CCceEEEEecCCC
Q 020480 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-----------------STEGYGLSWSKFK 190 (325)
Q Consensus 128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-----------------~~~v~~l~~~p~~ 190 (325)
-..+++.+++..++++-..++.|+++|+... .+.++.+- -...+.++++|++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~-----------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~ 694 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNE-----------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN 694 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCC-----------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC
Confidence 4677888877434555455678999987651 12222110 1134689999955
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec---------------CCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV---------------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (325)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw 255 (325)
..++++.+.++.|++||...+.. ..+.+ .-.....++++|++..++++-+.++.|++|
T Consensus 695 g~LyVad~~~~~I~v~d~~~g~v-------~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 695 EKVYIAMAGQHQIWEYNISDGVT-------RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred CeEEEEECCCCeEEEEECCCCeE-------EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 54788888899999999876421 11111 112456799999986677888889999999
Q ss_pred EccCCCCCC----------CeeEeec--------cCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480 256 DLRTPSVSK----------PVQSVVA--------HQSEVGVSILNASFRL--SHEDTCTCTHRHSR 301 (325)
Q Consensus 256 d~~~~~~~~----------~~~~~~~--------h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~ 301 (325)
|+.++.... .+..+.. .-.....++++++|.+ +...+..++.|+..
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 998754200 0000000 0112457899999875 55667788888753
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.83 E-value=6.1e-05 Score=62.48 Aligned_cols=138 Identities=12% Similarity=0.180 Sum_probs=95.5
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-----CceEEEEecCCCCCeEEE
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-----TEGYGLSWSKFKEGHLLS 196 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~~l~s 196 (325)
..|+-.|+++.|+.+.. .+.+ ..|-.|.+|++.-.. + .-.+..++.|. .-|++..|+|...+++.-
T Consensus 169 NaH~yhiNSiS~NsD~e-t~lS-aDdLrINLWnl~i~D------~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY 239 (460)
T COG5170 169 NAHPYHINSISFNSDKE-TLLS-ADDLRINLWNLEIID------G-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY 239 (460)
T ss_pred ccceeEeeeeeecCchh-eeee-ccceeeeeccccccC------C-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEE
Confidence 35889999999999873 4555 467899999987621 1 11223344443 457899999998888999
Q ss_pred EeCCCcEEEEeCCCCCCCCc---c-----c--ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCe
Q 020480 197 GSDDAQICLWDINAAPKNKS---L-----E--AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV 266 (325)
Q Consensus 197 ~s~dg~i~iwd~~~~~~~~~---~-----~--~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 266 (325)
.+..|.|++-|+|.....-. + . ...-+.+-.+.|..+.|+++| +++++-. =-+|+|||.+..+. |+
T Consensus 240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRd-yltvkiwDvnm~k~--pi 315 (460)
T COG5170 240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRD-YLTVKIWDVNMAKN--PI 315 (460)
T ss_pred ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEec-cceEEEEecccccC--Cc
Confidence 99999999999995422100 0 0 011122334678899999987 5776554 46899999998876 78
Q ss_pred eEeecc
Q 020480 267 QSVVAH 272 (325)
Q Consensus 267 ~~~~~h 272 (325)
.++..|
T Consensus 316 kTi~~h 321 (460)
T COG5170 316 KTIPMH 321 (460)
T ss_pred eeechH
Confidence 887655
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=2e-05 Score=73.82 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=105.4
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA- 201 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg- 201 (325)
.|....+|++|+... +.|++|+..|.|++|++.+ + .......+|.++|+-+.=+.+|..+|.+++...
T Consensus 1099 d~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~s--------G--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSS--------G--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred ccccceeeEEeecCC-ceEEeeeccceEEEEEccC--------c--cccccccccccccccccccCCcceeeeeccccCc
Confidence 478899999999966 7999999999999999987 3 234557789999999999999985555555554
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe----eccCCCee
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV----VAHQSEVG 277 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~ 277 (325)
-..+|++.... .+.++|.. -.++.|+..-+ .-+.|+......+||+.+... +.++ .+..-.-+
T Consensus 1168 lsaLW~~~s~~-----~~~Hsf~e----d~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~---l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1168 LSALWDASSTG-----GPRHSFDE----DKAVKFSNSLQ-FRALGTEADDALLYDVQTCSP---LQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred hHHHhcccccc-----Cccccccc----cceeehhhhHH-HHHhcccccceEEEecccCcH---HHHhcCcchhhhhhcc
Confidence 57799987632 34555543 45677876432 334455556788999999874 4442 11222336
Q ss_pred EEEeCCCCCccCCCCceEEeeeccee
Q 020480 278 VSILNASFRLSHEDTCTCTHRHSRYL 303 (325)
Q Consensus 278 ~i~~~p~~~~~~~~d~~~~~~~~~~~ 303 (325)
+..|+|...+. -..+.+||+|..
T Consensus 1235 ~a~FsP~D~LI---lndGvLWDvR~~ 1257 (1516)
T KOG1832|consen 1235 LAHFSPCDTLI---LNDGVLWDVRIP 1257 (1516)
T ss_pred ccccCCCcceE---eeCceeeeeccH
Confidence 77888876642 122345666553
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=4.6e-05 Score=67.88 Aligned_cols=134 Identities=12% Similarity=0.151 Sum_probs=90.4
Q ss_pred CcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-CcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (325)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~ 248 (325)
.+..+.||+..|..++--.+.+ -+++++.|.+|++|.++..... ....|..+++.|+.+|.++-|-.+. +.++ +.
T Consensus 727 rL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--Sc 802 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SC 802 (1034)
T ss_pred eeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--ec
Confidence 3566789999988887665555 7999999999999999864322 2334778899999999999998764 4554 55
Q ss_pred CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCC--CCc---cCCCCceEEeeecceeeeccC
Q 020480 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNAS--FRL---SHEDTCTCTHRHSRYLLYKFP 308 (325)
Q Consensus 249 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~--~~~---~~~~d~~~~~~~~~~~~~~~~ 308 (325)
||.|++||.-.++....+..-..| +.+..+..-++ ..+ .++...++++.|.|...|...
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E 866 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE 866 (1034)
T ss_pred cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence 899999998776631111111222 23333333332 222 346778899988888776543
No 300
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00046 Score=63.42 Aligned_cols=147 Identities=14% Similarity=0.150 Sum_probs=97.0
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
|...|.--++...+ .+++.|+.-|.|++|+-.. +... ..+..+..+.+..+..++... ++|.|+..|.|
T Consensus 32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~--------~~~~-~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V 100 (726)
T KOG3621|consen 32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHT--------GEMR-KLKNEGATGITCVRSVSSVEY-LVAAGTASGRV 100 (726)
T ss_pred CcceEEEEEeecCC-ceEEEecccceEEEEecCc--------hhhh-cccccCccceEEEEEecchhH-hhhhhcCCceE
Confidence 33344444555555 7999999999999999776 2221 122233455667778888877 89999999999
Q ss_pred EEEeCCCCCCCCcccceEee-ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC-CCCCCeeEeeccCCCeeEEEe
Q 020480 204 CLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP-SVSKPVQSVVAHQSEVGVSIL 281 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~i~~ 281 (325)
.++-+......... .+... ..|+..|++++|++++ ..+.+|...|.|.+--+... ....+.+.+-...+.|..+..
T Consensus 101 ~v~ql~~~~p~~~~-~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~ 178 (726)
T KOG3621|consen 101 SVFQLNKELPRDLD-YVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY 178 (726)
T ss_pred EeehhhccCCCcce-eeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence 99998875432211 12222 3378899999999998 57779999999998887762 111123333334556655555
Q ss_pred CC
Q 020480 282 NA 283 (325)
Q Consensus 282 ~p 283 (325)
..
T Consensus 179 ~q 180 (726)
T KOG3621|consen 179 LQ 180 (726)
T ss_pred cc
Confidence 54
No 301
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.71 E-value=1.6e-05 Score=71.86 Aligned_cols=160 Identities=17% Similarity=0.214 Sum_probs=106.7
Q ss_pred CCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe----C
Q 020480 125 DGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS----D 199 (325)
Q Consensus 125 ~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s----~ 199 (325)
...+.|++++-.. ..++++|..+|.|.+-.++..... ......+|...+++++|++-..+.||.|- .
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrn 127 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRN 127 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc--------cceecccccccccccccccccHHHHHhhhhhhcc
Confidence 4456666666543 258999999999999998763221 12335678889999999998766777763 4
Q ss_pred CCcEEEEeCCCCCCCCcccceEeee-cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV 278 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 278 (325)
|..+.|||+.+.-..+.-.+ .|. +......+++|-.+. .++.+|.....++++|+|.... ....+ .+..+..
T Consensus 128 ds~~~Iwdi~s~ltvPke~~--~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~--~~~sv--nTk~vqG 200 (783)
T KOG1008|consen 128 DSSLKIWDINSLLTVPKESP--LFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLD--SVSSV--NTKYVQG 200 (783)
T ss_pred cCCccceecccccCCCcccc--ccccccccCccccccccCc-chhhcccccchhhhhhhhhhhh--hhhhh--hhhhccc
Confidence 67899999987632211111 111 233456688998664 6888999999999999995542 12222 2334566
Q ss_pred EEeCC-C-CCccCCCCceEEeee
Q 020480 279 SILNA-S-FRLSHEDTCTCTHRH 299 (325)
Q Consensus 279 i~~~p-~-~~~~~~~d~~~~~~~ 299 (325)
+..+| . +.+....|+.+.+||
T Consensus 201 ~tVdp~~~nY~cs~~dg~iAiwD 223 (783)
T KOG1008|consen 201 ITVDPFSPNYFCSNSDGDIAIWD 223 (783)
T ss_pred ceecCCCCCceeccccCceeecc
Confidence 77777 2 234555689999999
No 302
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.69 E-value=0.019 Score=51.22 Aligned_cols=148 Identities=7% Similarity=0.046 Sum_probs=92.4
Q ss_pred eEEEecCCCCcEEEEEe----------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE-
Q 020480 129 NRARYMPQNPFLIATKT----------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG- 197 (325)
Q Consensus 129 ~~v~~~~~~~~~la~g~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~- 197 (325)
..+.|++.|..+++-.- ....++++++.. ..+.......++|+..+|.|.+.. +++.
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-----------~~i~V~~~~~~pVhdf~W~p~S~~-F~vi~ 293 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-----------RSIPVEKDLKDPVHDFTWEPLSSR-FAVIS 293 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-----------cccceeccccccceeeeecccCCc-eeEEe
Confidence 35778888743333211 113577777765 212222356789999999999884 5444
Q ss_pred -eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec---CCcEEEEEccCCCCCCCeeEeeccC
Q 020480 198 -SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 198 -s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
-.+..+.++|++.. +. +..-...=+.+.|+|.+ ++++.++- .|.+-+||...... .+..+.+..
T Consensus 294 g~~pa~~s~~~lr~N--------l~-~~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~--~~~~~~~~n 361 (561)
T COG5354 294 GYMPASVSVFDLRGN--------LR-FYFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFK--VAGAFNGLN 361 (561)
T ss_pred cccccceeecccccc--------eE-EecCCcccccccccCcc-cEEEEecCCccccceEEeccCCceE--EEEEeecCC
Confidence 47788999999864 11 22233344567899986 66666654 47799999877653 232444332
Q ss_pred CCeeEEEeCCCCCc-----cC---CCCceEEeeecce
Q 020480 274 SEVGVSILNASFRL-----SH---EDTCTCTHRHSRY 302 (325)
Q Consensus 274 ~~v~~i~~~p~~~~-----~~---~~d~~~~~~~~~~ 302 (325)
.+-+.|+|+|++ ++ -.|..+++|++.-
T Consensus 362 --~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 362 --TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred --ceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 334579999985 11 3467888887643
No 303
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.69 E-value=0.0056 Score=43.52 Aligned_cols=102 Identities=9% Similarity=-0.043 Sum_probs=68.4
Q ss_pred eeEEEecC---CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 128 VNRARYMP---QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 128 v~~v~~~~---~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
|++++++. +|.+.|++|+.|..|++|+-.. .+..+. -++.|+.|.-...+ .|+.+-.+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEe-cccceEEEEEcCCC--EEEEEecCCEEE
Confidence 45555554 5668899999999999998654 133333 45678888776653 699999999999
Q ss_pred EEeCCCCCCCCcccceEeeecCCccEEEEEeec---CCCcEEEEEecCCcEE
Q 020480 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---RHEYLFGSVGDDQYLL 253 (325)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p---~~~~~l~s~~~dg~i~ 253 (325)
+|+-... +...+.. ..+.++++.. +|..-|++|=.+|.|-
T Consensus 67 vY~~~~R--------lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDRSQR--------LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeCcce--------eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9986432 3333322 3355555432 3445688888888764
No 304
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00026 Score=64.15 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=77.8
Q ss_pred eEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceE-EEEecCCCCCeE
Q 020480 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY-GLSWSKFKEGHL 194 (325)
Q Consensus 116 ~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l 194 (325)
++......-...|..+.|+|.- .++|.+..+|.|-+..++- ..+.++.-+...++ +++|.|+|. ++
T Consensus 11 ~~~~~~~~l~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~DGk-ll 77 (665)
T KOG4640|consen 11 NETNGVMSLPINIKRIEWNPKM-DLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRPDGK-LL 77 (665)
T ss_pred chhhhhhccccceEEEEEcCcc-chhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecCCCC-EE
Confidence 3333334456678889999987 6999999999999998874 55777776766776 999999998 99
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceEee-ecCCccEEEEEeec
Q 020480 195 LSGSDDAQICLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHL 237 (325)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p 237 (325)
+.|-.||+|++.|+.++.. +..+ ..-...|.++-|.|
T Consensus 78 aVg~kdG~I~L~Dve~~~~------l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGR------LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEecCCeEEEEEccCCCc------eeccccccccchheeeccc
Confidence 9999999999999998743 2221 12234567777764
No 305
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.53 E-value=0.00025 Score=39.40 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=32.3
Q ss_pred CcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (325)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd 207 (325)
+...+..|...|.++.|++.+. .+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 3556678889999999999886 899999999999996
No 306
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00061 Score=61.88 Aligned_cols=94 Identities=10% Similarity=0.201 Sum_probs=74.1
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEE-EEEeecCCCcEEEEEecCCcEEEEE
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVE-DVAWHLRHEYLFGSVGDDQYLLIWD 256 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~s~~~dg~i~iwd 256 (325)
...+..+.|+|.-. ++|.+..+|.|.+.-+.- ..+.++.-+...+. +++|.|+| .++|.|-.||+|++.|
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~-------qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNW-------QRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEecc-------ceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 34678999999988 999999999998888773 34666665666666 99999997 7999999999999999
Q ss_pred ccCCCCCCCeeEe-eccCCCeeEEEeCC
Q 020480 257 LRTPSVSKPVQSV-VAHQSEVGVSILNA 283 (325)
Q Consensus 257 ~~~~~~~~~~~~~-~~h~~~v~~i~~~p 283 (325)
..++.. +... ..-..+|.++-|++
T Consensus 91 ve~~~~---l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 91 VEKGGR---LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ccCCCc---eeccccccccchheeeccc
Confidence 999874 4442 22345778888874
No 307
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.50 E-value=0.012 Score=52.16 Aligned_cols=142 Identities=12% Similarity=0.020 Sum_probs=102.0
Q ss_pred ecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-cEEEEeCCCC
Q 020480 133 YMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-QICLWDINAA 211 (325)
Q Consensus 133 ~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-~i~iwd~~~~ 211 (325)
|++....++|..+. |+..+.+... ... .-.+|...|.-..+.-+.. -++.|..|| .+-|+|.+++
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~-----------~~~-iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWD-----------GYS-IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCC-----------Cee-EEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc
Confidence 44444467777664 5777776654 111 1236777888888888777 689999999 8999999986
Q ss_pred CCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCCCCCc---
Q 020480 212 PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNASFRL--- 287 (325)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~~--- 287 (325)
. ...+...-+.|.++..+|+| ..++.+.....|-+.|+.+++ +..+ +..-+-|+.++|||++++
T Consensus 393 e-------~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngn----v~~idkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 393 E-------VKRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGN----VRLIDKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred e-------EEEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCC----eeEecccccceeEEEEEcCCceeEEE
Confidence 3 34456666789999999998 578888888999999999998 3444 334567999999999995
Q ss_pred ---cCCCCceEEeeec
Q 020480 288 ---SHEDTCTCTHRHS 300 (325)
Q Consensus 288 ---~~~~d~~~~~~~~ 300 (325)
.+-....+++++.
T Consensus 461 afP~gy~tq~Iklydm 476 (668)
T COG4946 461 AFPEGYYTQSIKLYDM 476 (668)
T ss_pred ecCcceeeeeEEEEec
Confidence 2333345555543
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.46 E-value=0.011 Score=52.75 Aligned_cols=131 Identities=16% Similarity=0.202 Sum_probs=85.8
Q ss_pred ccCCCeeEEEecCCCCcEEEE--EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 123 NHDGEVNRARYMPQNPFLIAT--KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~--g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
.-.++|...+|.|.+ +.+++ |-.+..+.+++++. +....+ -...=..+.|+|.++ +++.++.|
T Consensus 272 ~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~-----------Nl~~~~--Pe~~rNT~~fsp~~r-~il~agF~ 336 (561)
T COG5354 272 DLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRG-----------NLRFYF--PEQKRNTIFFSPHER-YILFAGFD 336 (561)
T ss_pred cccccceeeeecccC-CceeEEecccccceeeccccc-----------ceEEec--CCcccccccccCccc-EEEEecCC
Confidence 567899999999987 45554 34677899999986 222222 233345678999998 66666554
Q ss_pred ---CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe------cCCcEEEEEccCCCCCCCeeEeec
Q 020480 201 ---AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTPSVSKPVQSVVA 271 (325)
Q Consensus 201 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~ 271 (325)
|.+-+||....- .++..+.+.+ ..-+.|+|+++ ++.+.. .|..+.|||+..... .
T Consensus 337 nl~gni~i~~~~~rf-----~~~~~~~~~n--~s~~~wspd~q-F~~~~~ts~k~~~Dn~i~l~~v~g~~~----f---- 400 (561)
T COG5354 337 NLQGNIEIFDPAGRF-----KVAGAFNGLN--TSYCDWSPDGQ-FYDTDTTSEKLRVDNSIKLWDVYGAKV----F---- 400 (561)
T ss_pred ccccceEEeccCCce-----EEEEEeecCC--ceEeeccCCce-EEEecCCCcccccCcceEEEEecCchh----h----
Confidence 789999987542 2343455433 34467999985 444443 478899999977652 1
Q ss_pred cCCCeeEEEeCCCCCc
Q 020480 272 HQSEVGVSILNASFRL 287 (325)
Q Consensus 272 h~~~v~~i~~~p~~~~ 287 (325)
..+.+.|.|.|+.
T Consensus 401 ---el~~~~W~p~~~~ 413 (561)
T COG5354 401 ---ELTNITWDPSGQY 413 (561)
T ss_pred ---hhhhccccCCccc
Confidence 3444566665553
No 309
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00036 Score=38.66 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=32.2
Q ss_pred ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256 (325)
Q Consensus 219 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd 256 (325)
+...+..|...|.+++|++.+ .++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 456677888899999999976 6899999999999996
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.45 E-value=0.018 Score=48.07 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=94.2
Q ss_pred CCceEEEEEec----cCCCeeEEEecCCCCcEEEEEecC--------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc
Q 020480 113 NGKVQIIQQIN----HDGEVNRARYMPQNPFLIATKTVS--------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180 (325)
Q Consensus 113 ~~~~~~~~~~~----h~~~v~~v~~~~~~~~~la~g~~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 180 (325)
.++++.+.... .....+.+++.|+| ++.++.... |.|..++... + +..+...-..
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~~-----------~-~~~~~~~~~~ 135 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPDG-----------K-VTVVADGLGF 135 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS-----------E-EEEEEEEESS
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCCC-----------e-EEEEecCccc
Confidence 34555544442 34578899999998 577765433 4566666542 1 2222223345
Q ss_pred eEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-CcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 181 v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
...|+|+|++..++++-+..+.|..+++...... ........+....+..-.+++..+| ++.++....+.|.++|..
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~- 213 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD- 213 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-
Confidence 6899999999855667788899999998754321 0001111222222347789999987 788888889999999988
Q ss_pred CCCCCCeeEeeccCCCeeEEEeC
Q 020480 260 PSVSKPVQSVVAHQSEVGVSILN 282 (325)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~i~~~ 282 (325)
++ .+..+......+++++|.
T Consensus 214 G~---~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 214 GK---LLREIELPVPRPTNCAFG 233 (246)
T ss_dssp SC---EEEEEE-SSSSEEEEEEE
T ss_pred cc---EEEEEcCCCCCEEEEEEE
Confidence 55 255554444588999994
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00047 Score=60.10 Aligned_cols=175 Identities=13% Similarity=-0.012 Sum_probs=113.1
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD- 199 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~- 199 (325)
.+-|...|+.+..... +++.+++.||.++.|.-..- .....+..+..|...+.+++.+-++. ++.|.+.
T Consensus 5 symhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~i-------sGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~ 74 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRI-------SGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDP 74 (558)
T ss_pred hhcccceeeeEeeehh--heEEeeecchhhhhcCCCCc-------cceeehhhhHHHHHHHHhhhccccce-eEeeccCc
Confidence 3457777777665553 59999999999999986530 01222344567888899999999988 8888777
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC--cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE--YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
|..++++|+........++ +..-.+.+. ...+|... .+-++.-.+|.+.++|-+...+. ....-.-|.++|.
T Consensus 75 Dhs~KvfDvEn~DminmiK----L~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-~~~fkklH~sPV~ 148 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIK----LVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-DGYFKKLHFSPVK 148 (558)
T ss_pred ccceeEEEeeccchhhhcc----cccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCc-cceecccccCceE
Confidence 9999999988653321111 111112121 12233211 23334457899999999987752 3444467999999
Q ss_pred EEEeCCCCCc--cCCCCceEEeeecceeeeccCeeEE
Q 020480 278 VSILNASFRL--SHEDTCTCTHRHSRYLLYKFPFFVL 312 (325)
Q Consensus 278 ~i~~~p~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~ 312 (325)
.+.++|.+.. +....|.+..|...- ..++|...+
T Consensus 149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l 184 (558)
T KOG0882|consen 149 KIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNL 184 (558)
T ss_pred EEEeeccccceeeccccceeEeecCCC-cccCccccc
Confidence 9999998774 555557788887653 344444433
No 312
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.00069 Score=62.48 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=86.2
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC---------CcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN---------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~ 248 (325)
.....++.|+.... +++.|+.||.++|-.+.+.... ..+..-+++.+|+..|..+.|+... ..|-+...
T Consensus 14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDT 91 (1189)
T ss_pred CceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCC
Confidence 45678999999877 8999999999999987764321 1222345678999999999999875 57878889
Q ss_pred CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEe
Q 020480 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTH 297 (325)
Q Consensus 249 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~ 297 (325)
+|.|-+|-+-.+.-. .-..-...++.|.+++|+.+|.- ..-.||.+.+
T Consensus 92 ~GlIiVWmlykgsW~-EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWC-EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred CceEEEEeeecccHH-HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 999999999887631 11112445778999999998872 3334555544
No 313
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.0094 Score=53.84 Aligned_cols=144 Identities=10% Similarity=0.080 Sum_probs=80.2
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEE--EeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYV--FDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~v--wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
..+.-..-+|+|+|.+++++...||...| +|+.. +. ...+..-.+.-+.=.|+|+|..++++.+..|
T Consensus 236 ~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~--------~~---~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G 304 (425)
T COG0823 236 FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG--------KN---LPRLTNGFGINTSPSWSPDGSKIVFTSDRGG 304 (425)
T ss_pred cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC--------Cc---ceecccCCccccCccCCCCCCEEEEEeCCCC
Confidence 34444456899999777778888886555 55554 11 2223332333336679999997777777888
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVGVS 279 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~i 279 (325)
.-.||-....... ...+......-..-.|+|+|..++.....+|. |.+.|+.++.. +..+ .+......-
T Consensus 305 ~p~I~~~~~~g~~-----~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~p 375 (425)
T COG0823 305 RPQIYLYDLEGSQ-----VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESP 375 (425)
T ss_pred CcceEEECCCCCc-----eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCC
Confidence 7666654433221 12222222222267899998644444433454 66666665552 2222 223333445
Q ss_pred EeCCCCCc
Q 020480 280 ILNASFRL 287 (325)
Q Consensus 280 ~~~p~~~~ 287 (325)
.|.++|+.
T Consensus 376 s~~~ng~~ 383 (425)
T COG0823 376 SWAPNGRM 383 (425)
T ss_pred CcCCCCce
Confidence 67777763
No 314
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.32 E-value=0.033 Score=46.19 Aligned_cols=145 Identities=10% Similarity=0.034 Sum_probs=87.9
Q ss_pred EEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---CceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480 131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---TEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (325)
Q Consensus 131 v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~l~s~s~dg~i~iwd 207 (325)
++.+.+| ++||+ -.|..|.+-..+. .-...+.+..... ..=..++|+|++. +||.+...|+|++||
T Consensus 3 ~~~~~~G-k~lAi-~qd~~iEiRsa~D--------df~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfd 71 (282)
T PF15492_consen 3 LALSSDG-KLLAI-LQDQCIEIRSAKD--------DFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFD 71 (282)
T ss_pred eeecCCC-cEEEE-EeccEEEEEeccC--------CchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEe
Confidence 4556667 56666 5677888877665 2222233333222 2346899999998 999999999999999
Q ss_pred CCCCCCCCcccceEeee-cCCccEEEEEeecCC-----CcEEEEEecCCcEEEEEccCC--CCCCCeeEe---eccCCCe
Q 020480 208 INAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRH-----EYLFGSVGDDQYLLIWDLRTP--SVSKPVQSV---VAHQSEV 276 (325)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~-----~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~---~~h~~~v 276 (325)
+... ....+.+...+. .-...|..+.|.+.. ...|++-..+|.++=|-+..+ +.-+..+++ ..+...|
T Consensus 72 l~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 72 LMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred cccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 9753 211222222111 123456666665432 235667778888888876432 211123333 2246789
Q ss_pred eEEEeCCCCCc
Q 020480 277 GVSILNASFRL 287 (325)
Q Consensus 277 ~~i~~~p~~~~ 287 (325)
+++.|+|..++
T Consensus 151 ~~~vy~p~h~L 161 (282)
T PF15492_consen 151 NSAVYHPKHRL 161 (282)
T ss_pred eEEEEcCCCCE
Confidence 99999998663
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0064 Score=57.43 Aligned_cols=142 Identities=11% Similarity=0.059 Sum_probs=90.3
Q ss_pred EecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-----cEEEE
Q 020480 132 RYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-----QICLW 206 (325)
Q Consensus 132 ~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-----~i~iw 206 (325)
+|++.+ ..+|.|+.+|.|.+++-.- +.+..+..+...+...-|.-++.++|++.+.|+ .++||
T Consensus 30 c~~s~~-~~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 30 CCSSST-GSVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred EEcCCC-ceEEEeeccccEEEecccc-----------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 355555 6899999999999988654 334556666655333445555555888877765 48999
Q ss_pred eCCCCCCCCcccce---Eeee----cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC-CCeeEeeccCCCeeE
Q 020480 207 DINAAPKNKSLEAM---QIFK----VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPVQSVVAHQSEVGV 278 (325)
Q Consensus 207 d~~~~~~~~~~~~~---~~~~----~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~ 278 (325)
++..........++ +.+. ....++.+++.+.+- ..+|.|-.+|.|..+.-.-.+.. ....-......+|+.
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg 176 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG 176 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence 99876543322333 2221 134567888888774 68899999999998854321110 011222334678888
Q ss_pred EEeCCCCC
Q 020480 279 SILNASFR 286 (325)
Q Consensus 279 i~~~p~~~ 286 (325)
+++..++.
T Consensus 177 L~~~~d~~ 184 (933)
T KOG2114|consen 177 LALRSDGK 184 (933)
T ss_pred eEEecCCc
Confidence 88887766
No 316
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0034 Score=56.36 Aligned_cols=134 Identities=14% Similarity=0.165 Sum_probs=85.0
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC--------
Q 020480 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-------- 199 (325)
Q Consensus 128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-------- 199 (325)
=+-+.|||.| .+|++--.-| |.+|-=.. ...++.+ .|. .|..+.|||... +|+|=+.
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~----------f~r~~RF-~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~ 277 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGES----------FDRIQRF-YHP-GVQFIDFSPNEK-YLVTYSPEPIIVEED 277 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCcc----------HHHHHhc-cCC-CceeeecCCccc-eEEEecCCccccCcc
Confidence 3568999999 6888865554 77886544 3334444 354 588999999988 7887542
Q ss_pred ---CCcEEEEeCCCCCCCCcccceEeeec--CCccE-EEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480 200 ---DAQICLWDINAAPKNKSLEAMQIFKV--HEGVV-EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (325)
Q Consensus 200 ---dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v-~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 273 (325)
...++|||+++|... +.|.. ....+ .-+.||.++ .++|--. -.+|.||+..+... +..-.-.-
T Consensus 278 d~e~~~l~IWDI~tG~lk------rsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~-~~sisIyEtpsf~l---ld~Kslki 346 (698)
T KOG2314|consen 278 DNEGQQLIIWDIATGLLK------RSFPVIKSPYLKWPIFRWSHDD-KYFARMT-GNSISIYETPSFML---LDKKSLKI 346 (698)
T ss_pred cCCCceEEEEEccccchh------cceeccCCCccccceEEeccCC-ceeEEec-cceEEEEecCceee---ecccccCC
Confidence 257999999998543 33322 12222 236899887 4665444 46799998876441 21111223
Q ss_pred CCeeEEEeCCCCCc
Q 020480 274 SEVGVSILNASFRL 287 (325)
Q Consensus 274 ~~v~~i~~~p~~~~ 287 (325)
..|....|+|.+.+
T Consensus 347 ~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNL 360 (698)
T ss_pred ccccCcccCCCcce
Confidence 45777788887653
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.27 E-value=0.0018 Score=61.38 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=76.2
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 218 (325)
..+.-|+....+-.+|++. .+..+...-..+.|+-++-+ +. .+.+|...|+|.+-|.++. .
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~----------~~e~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~------~ 208 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNT----------EKETRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSF------E 208 (1118)
T ss_pred cceeecchhhheeeeeccc----------ceeeeeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcC------c
Confidence 3455566666777788876 12222222223345555543 44 8999999999999999887 5
Q ss_pred ceEeeecCCccEEEEEeecCCCcEEEEEec---------CCcEEEEEccCCCCCCCeeE
Q 020480 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGD---------DQYLLIWDLRTPSVSKPVQS 268 (325)
Q Consensus 219 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~ 268 (325)
.++++.+|++.|.++... | ++|++||. |..|+|||+|+.+...|+..
T Consensus 209 ~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~ 264 (1118)
T KOG1275|consen 209 TIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF 264 (1118)
T ss_pred eeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCccc
Confidence 689999999999877654 4 78989983 67789999999886555543
No 318
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.021 Score=51.58 Aligned_cols=120 Identities=9% Similarity=0.125 Sum_probs=75.4
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC---CCcEEEEeCCCCCCCCcccceEeeec
Q 020480 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFKV 225 (325)
Q Consensus 149 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 225 (325)
.+.|+.++. +..|+-.+ .-...|...+|-|.|. .+++-+. ..++.+|-+.+..... ..+..+..
T Consensus 426 n~eIfrire---------KdIpve~v-elke~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~~e~~~~~~--~lVk~~dk 492 (698)
T KOG2314|consen 426 NLEIFRIRE---------KDIPVEVV-ELKESVIAFAWEPHGD-KFAVISGNTVKNTVSFYAVETNIKKP--SLVKELDK 492 (698)
T ss_pred eEEEEEeec---------cCCCceee-ecchheeeeeeccCCC-eEEEEEccccccceeEEEeecCCCch--hhhhhhcc
Confidence 456677665 22334333 3456889999999998 5655443 3578899888533221 22333332
Q ss_pred CCccEEEEEeecCCCcEEEEE---ecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480 226 HEGVVEDVAWHLRHEYLFGSV---GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 226 ~~~~v~~v~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 287 (325)
...+.+.|+|.|. +++.+ |..|.+.++|+.-... .......| ...+.+.|.|.|++
T Consensus 493 --~~~N~vfwsPkG~-fvvva~l~s~~g~l~F~D~~~a~~--k~~~~~eh-~~at~veWDPtGRY 551 (698)
T KOG2314|consen 493 --KFANTVFWSPKGR-FVVVAALVSRRGDLEFYDTDYADL--KDTASPEH-FAATEVEWDPTGRY 551 (698)
T ss_pred --cccceEEEcCCCc-EEEEEEecccccceEEEecchhhh--hhccCccc-cccccceECCCCCE
Confidence 4578899999985 55444 3578999999885332 11111223 34677899999996
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.0013 Score=61.94 Aligned_cols=110 Identities=14% Similarity=0.264 Sum_probs=80.4
Q ss_pred eEEEecCCCCcEEEEEe----cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 129 NRARYMPQNPFLIATKT----VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 129 ~~v~~~~~~~~~la~g~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
+-..|+|..+ ++|+++ ..|.|.||--... ...-.+.+- .+++++|+|..- .|+.|-.-|.+.
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadtGE---------Pqr~Vt~P~---hatSLCWHpe~~-vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFADTGE---------PQRDVTYPV---HATSLCWHPEEF-VLAQGWEMGVSD 84 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEecCCC---------CCcccccce---ehhhhccChHHH-HHhhccccceeE
Confidence 3357888874 777765 4578888864431 111111222 346799999877 899999999999
Q ss_pred EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
+|...... .-.....|...|..+.|+++| +.++++..-|.|.+|....
T Consensus 85 v~~~~~~e------~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 85 VQKTNTTE------THTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred EEecCCce------eeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence 99987652 233345689999999999998 7999999999999998763
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.0039 Score=57.54 Aligned_cols=114 Identities=11% Similarity=-0.012 Sum_probs=77.6
Q ss_pred ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
.|.--+++..+. +++.|+.-|.+++|+-..+.. ......+..+.+...+.+++. .++|.|+..|.|.++.+..
T Consensus 35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~-----~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEM-----RKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred eEEEEEeecCCc-eEEEecccceEEEEecCchhh-----hcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhc
Confidence 343344555566 899999999999999876632 122233344556667788875 7889999999999999887
Q ss_pred CCCCCCeeEe---eccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 260 PSVSKPVQSV---VAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 260 ~~~~~~~~~~---~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
......+..- +.|+..|++++|++++.- +|...|.+..-.+
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 4432122221 347889999999999983 6655566555433
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0028 Score=59.76 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=58.9
Q ss_pred CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE-EecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
-.+++++|+|.. -.||.|-.-|.+.+|.... ...++ ...|..++..+.|+++|. .++|+..-|.+.
T Consensus 60 ~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~-----------~e~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 60 VHATSLCWHPEE-FVLAQGWEMGVSDVQKTNT-----------TETHTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVH 126 (1416)
T ss_pred eehhhhccChHH-HHHhhccccceeEEEecCC-----------ceeeeeccCCCCCceeEEecCCCC-eEEEcCCCceeE
Confidence 345679999976 6888998999999999876 22233 347999999999999999 899999999999
Q ss_pred EEeCC
Q 020480 205 LWDIN 209 (325)
Q Consensus 205 iwd~~ 209 (325)
+|...
T Consensus 127 lwr~d 131 (1416)
T KOG3617|consen 127 LWRYD 131 (1416)
T ss_pred EEEee
Confidence 99766
No 322
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.09 E-value=0.0023 Score=38.08 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=30.6
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK 157 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~ 157 (325)
.......|.+++|+|.. .++|.|+.+|.|.+|.++.
T Consensus 7 ~k~l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 7 EKNLPSRVSCMSWCPTM-DLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred ccCCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCC
Confidence 33455679999999998 6999999999999999854
No 323
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.06 E-value=0.084 Score=44.07 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=81.3
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEec-CCCCCeEEEEeCCCcEEEEeC
Q 020480 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS-KFKEGHLLSGSDDAQICLWDI 208 (325)
Q Consensus 130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~s~s~dg~i~iwd~ 208 (325)
+..|.+....++++-...+.|..|+... .....+... ...++.+. +++ .++.+...+ +.++|.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-----------~~~~~~~~~--~~~G~~~~~~~g--~l~v~~~~~-~~~~d~ 67 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-----------GEVEVIDLP--GPNGMAFDRPDG--RLYVADSGG-IAVVDP 67 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT-----------TEEEEEESS--SEEEEEEECTTS--EEEEEETTC-EEEEET
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC-----------CeEEEEecC--CCceEEEEccCC--EEEEEEcCc-eEEEec
Confidence 5678884447888877889999999876 112222222 26777777 554 466666544 455588
Q ss_pred CCCCCCCcccceEeee--c-CCccEEEEEeecCCCcEEEEEecC--------CcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480 209 NAAPKNKSLEAMQIFK--V-HEGVVEDVAWHLRHEYLFGSVGDD--------QYLLIWDLRTPSVSKPVQSVVAHQSEVG 277 (325)
Q Consensus 209 ~~~~~~~~~~~~~~~~--~-~~~~v~~v~~~p~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~h~~~v~ 277 (325)
.++.. ..+.... . .....+++++.|+| ++.++.... |.|..++.. ++ +......-...+
T Consensus 68 ~~g~~----~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~pN 137 (246)
T PF08450_consen 68 DTGKV----TVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGFPN 137 (246)
T ss_dssp TTTEE----EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESSEE
T ss_pred CCCcE----EEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce----EEEEecCccccc
Confidence 77632 2232321 1 34678999999998 576666543 446666665 33 344433456678
Q ss_pred EEEeCCCCC
Q 020480 278 VSILNASFR 286 (325)
Q Consensus 278 ~i~~~p~~~ 286 (325)
.|+|+|+++
T Consensus 138 Gi~~s~dg~ 146 (246)
T PF08450_consen 138 GIAFSPDGK 146 (246)
T ss_dssp EEEEETTSS
T ss_pred ceEECCcch
Confidence 999999997
No 324
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.01 E-value=0.02 Score=55.13 Aligned_cols=138 Identities=7% Similarity=-0.049 Sum_probs=82.6
Q ss_pred cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc-eEEEEec----CCCCCeEEEEeCCCcEEEEeCCCCCCCCcccce
Q 020480 146 VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE-GYGLSWS----KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM 220 (325)
Q Consensus 146 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~----p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 220 (325)
....|+-.|+.. .+.+.....|... |..++=. .-.+..-+.|-.+..+..||.|...........
T Consensus 502 ~~~~ly~mDLe~----------GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 502 NPNKLYKMDLER----------GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred CCCceEEEecCC----------CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 345666677765 3335555544432 4433221 111224667778899999999975421000001
Q ss_pred EeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeee
Q 020480 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRH 299 (325)
Q Consensus 221 ~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~ 299 (325)
..+ .......|++-..+| .||.|+.+|.||+||-- +.. .-..+.+...||.+|..+.+|++ .+..+..+.+.+
T Consensus 572 k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 572 KQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKR--AKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chh--hhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 111 234456777776654 79999999999999943 332 23445677899999999999996 443444444444
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.98 E-value=0.053 Score=53.49 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=72.4
Q ss_pred eEEEecCCCCcEEEE-----EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe---CC
Q 020480 129 NRARYMPQNPFLIAT-----KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS---DD 200 (325)
Q Consensus 129 ~~v~~~~~~~~~la~-----g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s---~d 200 (325)
+.|.|..+| .++|+ ......|+|||....... ...+ ..+.-.+++|-|.|. ++++-. .|
T Consensus 199 ~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drEg~Lns-----~se~------~~~l~~~LsWkPsgs-~iA~iq~~~sd 265 (1265)
T KOG1920|consen 199 TSISWRGDG-EYFAVSFVESETGTRKIRVYDREGALNS-----TSEP------VEGLQHSLSWKPSGS-LIAAIQCKTSD 265 (1265)
T ss_pred ceEEEccCC-cEEEEEEEeccCCceeEEEecccchhhc-----ccCc------ccccccceeecCCCC-eEeeeeecCCC
Confidence 468999998 68887 333379999998741110 0111 122335899999888 777753 45
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEE---EecCCcEEEEEccCCC
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS---VGDDQYLLIWDLRTPS 261 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s---~~~dg~i~iwd~~~~~ 261 (325)
+.|.+|.-+.-..+. ....+......|..++|+.++ .+||. ......|++|-+.+..
T Consensus 266 ~~IvffErNGL~hg~---f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGE---FVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CcEEEEecCCccccc---cccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeE
Confidence 578888766543321 111122233448999999886 57766 4444559999887643
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.84 E-value=0.017 Score=52.27 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=85.1
Q ss_pred CCeeEEEecCCCCcEEEEE--ecC-CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 126 GEVNRARYMPQNPFLIATK--TVS-AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g--~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
..+..-+|+|++..+.... ... ..+.++++.. +....+..+.++. ..-+|+|+|..++++...||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--------g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--------GKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccC--------CccceeeccCCcc---CCccCCCCCCEEEEEECCCCC
Confidence 4555667888875433322 122 4588889887 3344344444444 467899999978888888887
Q ss_pred EEEE--eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 203 ICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 203 i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
..|| |+.... ...+....+.-..=.|+|+|..++.+.+..|.-.||-+..... ....+......-..-.
T Consensus 262 ~~iy~~dl~~~~-------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~--~~~riT~~~~~~~~p~ 332 (425)
T COG0823 262 PDIYLMDLDGKN-------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS--QVTRLTFSGGGNSNPV 332 (425)
T ss_pred ccEEEEcCCCCc-------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--ceeEeeccCCCCcCcc
Confidence 5555 555442 1122322222235689999987777777888877776554332 1333332222223677
Q ss_pred eCCCCCc
Q 020480 281 LNASFRL 287 (325)
Q Consensus 281 ~~p~~~~ 287 (325)
|+|+|+.
T Consensus 333 ~SpdG~~ 339 (425)
T COG0823 333 WSPDGDK 339 (425)
T ss_pred CCCCCCE
Confidence 9999984
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.83 E-value=0.071 Score=52.64 Aligned_cols=172 Identities=15% Similarity=0.185 Sum_probs=97.7
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCC-----CC--------CCCCCCCCCCcEEEecC-------------
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH-----PS--------KPPLDGACSPDLRLRGH------------- 177 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~-----~~--------~~~~~~~~~~~~~~~~h------------- 177 (325)
-...|.+++|+|+. ..++..+..+++.+-+..-. +. +...-+..+....+.|.
T Consensus 108 vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 108 VDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred ccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence 35789999999998 68888787777776543110 00 00000111111112211
Q ss_pred --------CCceEEEEecCCCCCeEEEE-----eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEE
Q 020480 178 --------STEGYGLSWSKFKEGHLLSG-----SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG 244 (325)
Q Consensus 178 --------~~~v~~l~~~p~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 244 (325)
.+.=+++.|--+|. ++++. .....|+|||....-. ..-....+.-.+++|-|.| .++|
T Consensus 187 k~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drEg~Ln-------s~se~~~~l~~~LsWkPsg-s~iA 257 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRGDGE-YFAVSFVESETGTRKIRVYDREGALN-------STSEPVEGLQHSLSWKPSG-SLIA 257 (1265)
T ss_pred ccccchhhccCCceEEEccCCc-EEEEEEEeccCCceeEEEecccchhh-------cccCcccccccceeecCCC-CeEe
Confidence 11224689999988 67762 3337899999872211 1111222334578999987 5776
Q ss_pred EEe---cCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCcc-----CCCCceEEeeecceeee
Q 020480 245 SVG---DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLS-----HEDTCTCTHRHSRYLLY 305 (325)
Q Consensus 245 s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~-----~~~d~~~~~~~~~~~~~ 305 (325)
+-. .|+.|.+|.-..-+...-.........+|..++|+.++.+. ...-..+++|....+.|
T Consensus 258 ~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 258 AIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred eeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 654 56678888755433211122222233459999999998852 23334488998777665
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.018 Score=50.68 Aligned_cols=164 Identities=12% Similarity=-0.051 Sum_probs=104.6
Q ss_pred eccCCCeeEEEecCCCCcEEEEEec-CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC--CCeEEEEe
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK--EGHLLSGS 198 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~~l~s~s 198 (325)
..|.+.|..++.+-++ .++.+++. |..++++|+.... ......+..-.+.+.. ..++.. ..+-++.-
T Consensus 50 raHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~D--------minmiKL~~lPg~a~w-v~skGd~~s~IAVs~~ 119 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFD--------MINMIKLVDLPGFAEW-VTSKGDKISLIAVSLF 119 (558)
T ss_pred HHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccc--------hhhhcccccCCCceEE-ecCCCCeeeeEEeecc
Confidence 3588899999999888 78888777 9999999998621 1111112111121111 112221 11233344
Q ss_pred CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC-CCCC-----------CCe
Q 020480 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVS-----------KPV 266 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~-----------~~~ 266 (325)
.+|.+.++|-..... .......-|.++|..+.+++.+ ..+++....|.|.-|.... .+.. .-+
T Consensus 120 ~sg~i~VvD~~~d~~----q~~~fkklH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL 194 (558)
T KOG0882|consen 120 KSGKIFVVDGFGDFC----QDGYFKKLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL 194 (558)
T ss_pred cCCCcEEECCcCCcC----ccceecccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCccccccccccccchh
Confidence 678999999876532 2233445689999999999987 4777888899999998873 1100 011
Q ss_pred eEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480 267 QSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS 300 (325)
Q Consensus 267 ~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~ 300 (325)
..+...+....++.|+|+|.- .-+.|..++++..
T Consensus 195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred hcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 222234567889999999874 4558888888654
No 329
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.65 E-value=0.089 Score=46.17 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=74.2
Q ss_pred EecC-CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-------CCCceEEEEecCCCCCeEEEEe-----
Q 020480 132 RYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-------HSTEGYGLSWSKFKEGHLLSGS----- 198 (325)
Q Consensus 132 ~~~~-~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s----- 198 (325)
.|.+ +| .++.+... |.|.+-|+....... ..+...+.. ..+...-++++|++..+++...
T Consensus 200 ~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~-----~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 200 AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKF-----LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred ceEcCCC-cEEEEecC-CeEEEEecCCCccee-----cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence 3455 56 45555344 999999976521111 111111111 1223344999999985444332
Q ss_pred ----CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC-cEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480 199 ----DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (325)
Q Consensus 199 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 269 (325)
..+.|.++|..+.+ .+..+. -...+..++++|++. .++++...++.|.++|..+.+. +.++
T Consensus 273 thk~~~~~V~ViD~~t~k------vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~---i~~i 338 (352)
T TIGR02658 273 THKTASRFLFVVDAKTGK------RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE---LSSV 338 (352)
T ss_pred cccCCCCEEEEEECCCCe------EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE---Eeee
Confidence 22579999998763 344433 245789999999986 4555555789999999999884 5555
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.58 E-value=0.004 Score=59.08 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=79.6
Q ss_pred CCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe
Q 020480 168 CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG 247 (325)
Q Consensus 168 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~ 247 (325)
.++..++..|+...++++|+...+ +|+.|+..|.|+++++.++.. .....+|.+.|+.+.-+.+|...|.+++
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~------e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSM------EESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred cccchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCccc------cccccccccccccccccCCcceeeeecc
Confidence 344566778889999999999887 899999999999999999843 5566889999999998888875555554
Q ss_pred cCC-cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480 248 DDQ-YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR 286 (325)
Q Consensus 248 ~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 286 (325)
... ...+|++..... +.+++.. -.++.|+....
T Consensus 1164 ~S~PlsaLW~~~s~~~--~~Hsf~e----d~~vkFsn~~q 1197 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGG--PRHSFDE----DKAVKFSNSLQ 1197 (1516)
T ss_pred ccCchHHHhccccccC--ccccccc----cceeehhhhHH
Confidence 444 678999876332 4555532 34577776533
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.14 Score=48.97 Aligned_cols=165 Identities=8% Similarity=0.089 Sum_probs=101.5
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCC-----eEEEEeCCCCCCCCCCCCCCCCcE----EEec-----CCCceEEEEecCC
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSA-----EVYVFDYSKHPSKPPLDGACSPDL----RLRG-----HSTEGYGLSWSKF 189 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~----~~~~-----h~~~v~~l~~~p~ 189 (325)
++..+-..-+...+.++|++-+.|+ .|++|++....... .|.. .+.+ ...++.+++.+.+
T Consensus 63 ~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~------sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~ 136 (933)
T KOG2114|consen 63 YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN------SPQCLYEHRIFTIKNPTNPSPASSLAVSED 136 (933)
T ss_pred cchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC------CcceeeeeeeeccCCCCCCCcceEEEEEcc
Confidence 4434333333433446777766654 58999998632111 1222 1222 3467889999988
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (325)
Q Consensus 190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 269 (325)
-. .+|.|-.+|.|..+.-+-.+... ...........+|+.+.+.-++...+ .+..-..|.+|.+..... ....+
T Consensus 137 l~-~Iv~Gf~nG~V~~~~GDi~RDrg--sr~~~~~~~~~pITgL~~~~d~~s~l-Fv~Tt~~V~~y~l~gr~p--~~~~l 210 (933)
T KOG2114|consen 137 LK-TIVCGFTNGLVICYKGDILRDRG--SRQDYSHRGKEPITGLALRSDGKSVL-FVATTEQVMLYSLSGRTP--SLKVL 210 (933)
T ss_pred cc-EEEEEecCcEEEEEcCcchhccc--cceeeeccCCCCceeeEEecCCceeE-EEEecceeEEEEecCCCc--ceeee
Confidence 66 89999999999988543221110 11222233457899999988776532 333345689999984431 34557
Q ss_pred eccCCCeeEEEeCCCCC-ccCCCCceEEeeec
Q 020480 270 VAHQSEVGVSILNASFR-LSHEDTCTCTHRHS 300 (325)
Q Consensus 270 ~~h~~~v~~i~~~p~~~-~~~~~d~~~~~~~~ 300 (325)
..|+.+++|..|++... +.++.+..+.+++.
T Consensus 211 d~~G~~lnCss~~~~t~qfIca~~e~l~fY~s 242 (933)
T KOG2114|consen 211 DNNGISLNCSSFSDGTYQFICAGSEFLYFYDS 242 (933)
T ss_pred ccCCccceeeecCCCCccEEEecCceEEEEcC
Confidence 88899999999998544 66666666666654
No 332
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.45 E-value=0.22 Score=43.75 Aligned_cols=101 Identities=9% Similarity=-0.087 Sum_probs=67.2
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe---------CCCcEEEEeCCCCCCCCccc
Q 020480 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS---------DDAQICLWDINAAPKNKSLE 218 (325)
Q Consensus 148 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~ 218 (325)
++|.+.|... .+.+.++..-..+ ..+ ++|++..++++.+ .+..|.+||..+.+.
T Consensus 27 ~~v~ViD~~~----------~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~----- 89 (352)
T TIGR02658 27 TQVYTIDGEA----------GRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP----- 89 (352)
T ss_pred ceEEEEECCC----------CEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-----
Confidence 7899999887 3434555432222 234 9999996566666 689999999998743
Q ss_pred ceEeeec-------CCccEEEEEeecCCCcEEEEEec-CCcEEEEEccCCCCCCCeeEe
Q 020480 219 AMQIFKV-------HEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSV 269 (325)
Q Consensus 219 ~~~~~~~-------~~~~v~~v~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~ 269 (325)
+..+.- .......++++|+|..++++--. +..|-+.|+.+++. +..+
T Consensus 90 -~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv---v~ei 144 (352)
T TIGR02658 90 -IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF---VRMM 144 (352)
T ss_pred -EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE---EEEE
Confidence 333221 12234468899998645544424 89999999999884 5544
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.42 E-value=0.37 Score=42.03 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=80.4
Q ss_pred CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-CCCcEEEecCCCceEEEEecCCCCC
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKEG 192 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~ 192 (325)
.+++.+.....+++|++++-.. + . |++| ..+.|.+|++.. .. ..+...+. ....++++... ++
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~~-~-~-lv~~-~g~~l~v~~l~~--------~~~l~~~~~~~-~~~~i~sl~~~--~~- 140 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSFN-G-R-LVVA-VGNKLYVYDLDN--------SKTLLKKAFYD-SPFYITSLSVF--KN- 140 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEET-T-E-EEEE-ETTEEEEEEEET--------TSSEEEEEEE--BSSSEEEEEEE--TT-
T ss_pred eEEEEEEEEeecCcceEhhhhC-C-E-EEEe-ecCEEEEEEccC--------cccchhhheec-ceEEEEEEecc--cc-
Confidence 4678777788899999999883 3 3 4443 347999999987 22 22222222 22366777665 44
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
+++.|..-..+.++..+.... .+..+. -......++++.+-+++ ..++.+..+|.+.++....
T Consensus 141 ~I~vgD~~~sv~~~~~~~~~~--~l~~va-~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEENN--KLILVA-RDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEESSSSEEEEEEETTTE---EEEEE-EESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEcccCEEEEEEEccCC--EEEEEE-ecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence 899999999999886554211 111111 12235568888888776 5888999999999998873
No 334
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.36 E-value=0.26 Score=42.03 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=88.9
Q ss_pred CeeEEEecCCCCcEEEEEecCCe-EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE-----eCC
Q 020480 127 EVNRARYMPQNPFLIATKTVSAE-VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG-----SDD 200 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-----s~d 200 (325)
....++.+|.....++.+..-|+ ..+||..+...... ....+-+.|.+| -.|+++|. +|++. ...
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~--~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g~ 76 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR--LWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETGR 76 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE--EcCCCCCEEecC------EEEcCCCC-EEEEeccccCCCc
Confidence 34567788866678888888774 56788876111000 000111233344 46999999 56664 345
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-----------------cCCcEEEEEccCCCCC
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------------DDQYLLIWDLRTPSVS 263 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~ 263 (325)
|.|-|||....- ..+..+..|.-.-..+.+.|+++.+++.-+ .+.++.+-|.++++.
T Consensus 77 G~IgVyd~~~~~-----~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l- 150 (305)
T PF07433_consen 77 GVIGVYDAARGY-----RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL- 150 (305)
T ss_pred EEEEEEECcCCc-----EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce-
Confidence 889999998321 446667777767778889998854443322 233455556666652
Q ss_pred CCeeE--e--eccCCCeeEEEeCCCCCc
Q 020480 264 KPVQS--V--VAHQSEVGVSILNASFRL 287 (325)
Q Consensus 264 ~~~~~--~--~~h~~~v~~i~~~p~~~~ 287 (325)
+.. + .-|.-.|..++++++|.+
T Consensus 151 --l~q~~Lp~~~~~lSiRHLa~~~~G~V 176 (305)
T PF07433_consen 151 --LEQVELPPDLHQLSIRHLAVDGDGTV 176 (305)
T ss_pred --eeeeecCccccccceeeEEecCCCcE
Confidence 333 3 336678999999998875
No 335
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.026 Score=54.88 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=70.1
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 218 (325)
..++.|+..|.|-..|.... ..+...=..-.++|++++|+.+|. .++.|-.+|.|.+||+..+ +
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n---------L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~------k 163 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN---------LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA------K 163 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc---------cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCC------c
Confidence 47889999999999888761 222222223457999999999999 8999999999999999986 3
Q ss_pred ceEeeecCCccEE---EEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480 219 AMQIFKVHEGVVE---DVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (325)
Q Consensus 219 ~~~~~~~~~~~v~---~v~~~p~~~~~l~s~~~dg~i~iwd~~ 258 (325)
.++.+..|..+.. .+-+...+ ..+.++...|. +|.+-
T Consensus 164 ~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 164 ILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEEE
Confidence 4555555544433 33444444 46777777776 56554
No 336
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.16 E-value=0.022 Score=45.82 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=59.1
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCce-EEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL 217 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 217 (325)
.-+++|+.+|.|.+|...... ..... +..-...| +.+.--..+. +..+++.||.|+.|++...+.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g-------~~~d~--~~s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p~k~---- 136 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEG-------AHSDR--VCSGEESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKPNKV---- 136 (238)
T ss_pred ceEEeecccceEEEecCCccc-------hHHHh--hhcccccceeccccccccc-eeEEeccCCceeeeccccCce----
Confidence 578999999999999987411 11000 11111112 2222222233 788999999999999987643
Q ss_pred cceEeeecCC-ccEEEEEeecCCCcEEEEE--ecCCcEEEEEccCCC
Q 020480 218 EAMQIFKVHE-GVVEDVAWHLRHEYLFGSV--GDDQYLLIWDLRTPS 261 (325)
Q Consensus 218 ~~~~~~~~~~-~~v~~v~~~p~~~~~l~s~--~~dg~i~iwd~~~~~ 261 (325)
+-....|+ ..+.....+..+ .+++.+ |.|..++.|++....
T Consensus 137 --~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 137 --LGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred --eeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhhhh
Confidence 33333444 233333333333 355555 667777777766544
No 337
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.15 E-value=0.14 Score=45.85 Aligned_cols=132 Identities=11% Similarity=-0.023 Sum_probs=77.0
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 218 (325)
..+.+++.+|.++.+|..+ + +.+.... .. ....... .+. .++.++.+|.+..+|..+++.
T Consensus 242 ~~vy~~~~~g~l~a~d~~t--------G--~~~W~~~-~~-~~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~~----- 301 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRS--------G--RVLWKRD-AS-SYQGPAV--DDN-RLYVTDADGVVVALDRRSGSE----- 301 (377)
T ss_pred CEEEEEEcCCEEEEEECCC--------C--cEEEeec-cC-CccCceE--eCC-EEEEECCCCeEEEEECCCCcE-----
Confidence 3566677899999999876 2 2222222 11 1111111 244 688888999999999987743
Q ss_pred ceEeeecCCc-cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe-eEEEeCCCCCccCCCCceEE
Q 020480 219 AMQIFKVHEG-VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV-GVSILNASFRLSHEDTCTCT 296 (325)
Q Consensus 219 ~~~~~~~~~~-~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~i~~~p~~~~~~~~d~~~~ 296 (325)
+........ ....... .+ ..+++++.+|.|+++|..+++. +..+..+...+ .+.++..+..+.++.|+.+.
T Consensus 302 -~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~~---~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~ 374 (377)
T TIGR03300 302 -LWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGSF---VARLKTDGSGIASPPVVVGDGLLVQTRDGDLY 374 (377)
T ss_pred -EEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCCCE---EEEEEcCCCccccCCEEECCEEEEEeCCceEE
Confidence 222211111 1111122 23 4777899999999999998874 66666555433 33334444444677777665
Q ss_pred e
Q 020480 297 H 297 (325)
Q Consensus 297 ~ 297 (325)
.
T Consensus 375 ~ 375 (377)
T TIGR03300 375 A 375 (377)
T ss_pred E
Confidence 4
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.98 E-value=0.36 Score=34.46 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=56.0
Q ss_pred EecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCC
Q 020480 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK 264 (325)
Q Consensus 185 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 264 (325)
.|.-++.+.|+.|+.|..|++|+-.. .+..+.. ...|.+++-... ..|+.+...|+|-+|+-...
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e--------~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~R---- 73 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDE--------IVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQR---- 73 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCc--------EEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCcce----
Confidence 34556667899999999999998663 3555553 456777776654 57999999999999986332
Q ss_pred CeeEeeccCCCeeEEEeCC
Q 020480 265 PVQSVVAHQSEVGVSILNA 283 (325)
Q Consensus 265 ~~~~~~~h~~~v~~i~~~p 283 (325)
+..++. +..+.++++..
T Consensus 74 -lWRiKS-K~~~~~~~~~D 90 (111)
T PF14783_consen 74 -LWRIKS-KNQVTSMAFYD 90 (111)
T ss_pred -eeeecc-CCCeEEEEEEc
Confidence 455543 33355555543
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.96 E-value=0.1 Score=46.76 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=75.5
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC---C-C-----------------------------CCCCCCcEE
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP---P-L-----------------------------DGACSPDLR 173 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~---~-~-----------------------------~~~~~~~~~ 173 (325)
.|+.+.|.+.. .-||+|...|.|.||.+.....-. . . .....|..-
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 57889999986 589999999999998764321110 0 0 001122233
Q ss_pred EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec------CCccEEEEEeec---CC----C
Q 020480 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV------HEGVVEDVAWHL---RH----E 240 (325)
Q Consensus 174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~p---~~----~ 240 (325)
+....++|++++.+.- ++++.|..+|.+.|.|+|...-. ....+.. ....++++.|.. .+ .
T Consensus 82 ~~~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI----~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVI----YNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp E---S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEE----EEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred eeccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEE----eeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 3445789999999744 38999999999999999875221 1111111 234677888863 11 1
Q ss_pred cEEEEEecCCcEEEEEcc
Q 020480 241 YLFGSVGDDQYLLIWDLR 258 (325)
Q Consensus 241 ~~l~s~~~dg~i~iwd~~ 258 (325)
-.+++|...|.+.+|.+.
T Consensus 156 i~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEe
Confidence 467789999999999886
No 340
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.89 E-value=0.037 Score=32.89 Aligned_cols=31 Identities=16% Similarity=0.453 Sum_probs=28.0
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDIN 209 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~ 209 (325)
...|..++|+|... ++|.|+.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 35689999999998 99999999999999984
No 341
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.85 E-value=0.35 Score=44.53 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=75.8
Q ss_pred EeccCCCeeEEEecCCC----CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---C--ceEEEEecCCCC
Q 020480 121 QINHDGEVNRARYMPQN----PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---T--EGYGLSWSKFKE 191 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~----~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~--~v~~l~~~p~~~ 191 (325)
.++.-..|..+.|.|-+ +.+||+ .....|.||.+-....+ ..+.+.....+- - --.++.|+|...
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e-----~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~ 125 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTE-----RNKLLMSQTCEIREPFPVLPQGCVWHPKKA 125 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccc-----cccceeeeeeeccCCcccCCCcccccCCCc
Confidence 34444567888999853 456776 56679999998632111 111121111111 1 124678999988
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 192 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
.|+.-.....--+++++.... .+..--...+.|.|.+|.++|.+++++.+..-.-++||-..
T Consensus 126 -iL~VLT~~dvSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 126 -ILTVLTARDVSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred -eEEEEecCceeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 666555444444566654432 22222234577999999999987777777766677888654
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.83 E-value=0.77 Score=37.99 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=70.4
Q ss_pred cCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 020480 134 MPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK 213 (325)
Q Consensus 134 ~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~ 213 (325)
.++...+++.|+..+.+.--|..+ +... .....+-.-+...+. -+. +++.|...|.+++-+.+++..
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~s--------G~~~-We~ilg~RiE~sa~v---vgd-fVV~GCy~g~lYfl~~~tGs~ 85 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQS--------GNLI-WEAILGVRIECSAIV---VGD-FVVLGCYSGGLYFLCVKTGSQ 85 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCC--------CcEE-eehhhCceeeeeeEE---ECC-EEEEEEccCcEEEEEecchhh
Confidence 344446888888888888888766 2211 001111111112222 245 799999999999999999854
Q ss_pred CCcccceEeeecCCc-cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480 214 NKSLEAMQIFKVHEG-VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (325)
Q Consensus 214 ~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 270 (325)
...+..-.. .+. ....+++ .++..|+.|+..+..|.++..+ +...+
T Consensus 86 ------~w~f~~~~~vk~~-a~~d~~~-glIycgshd~~~yalD~~~~~c---Vyksk 132 (354)
T KOG4649|consen 86 ------IWNFVILETVKVR-AQCDFDG-GLIYCGSHDGNFYALDPKTYGC---VYKSK 132 (354)
T ss_pred ------eeeeeehhhhccc-eEEcCCC-ceEEEecCCCcEEEecccccce---EEecc
Confidence 333332221 222 2335565 5889999999999999999875 55544
No 343
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.70 E-value=1 Score=37.57 Aligned_cols=150 Identities=12% Similarity=0.122 Sum_probs=81.6
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceEEEEecCCCCCeEEEEeCCC
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~dg 201 (325)
+-...+..+.|+|+...++|+....+.|..++... +.+.++.-. .+-.-+|++..++. ++++.-.++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----------~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~ 86 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----------KVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQ 86 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTT
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------CEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCC
Confidence 34556999999998768999999999998888754 334443311 24467888876665 555555689
Q ss_pred cEEEEeCCCCCCCCcccceEee-----ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--e----
Q 020480 202 QICLWDINAAPKNKSLEAMQIF-----KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--V---- 270 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~---- 270 (325)
.+.++++......-.......+ ..++..+-.++|+|.+..++ .+-...-.++|.++.......+... .
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeecccccccc
Confidence 9999998544322111111111 23556789999999875555 4556666778877751100012211 1
Q ss_pred --ccCCCeeEEEeCCCC
Q 020480 271 --AHQSEVGVSILNASF 285 (325)
Q Consensus 271 --~h~~~v~~i~~~p~~ 285 (325)
.....+.+++++|..
T Consensus 166 ~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp HT--SS---EEEEETTT
T ss_pred ccceeccccceEEcCCC
Confidence 133467889999854
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.62 E-value=0.4 Score=45.00 Aligned_cols=100 Identities=10% Similarity=-0.029 Sum_probs=60.1
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-----CCC----eeEee
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-----SKP----VQSVV 270 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~----~~~~~ 270 (325)
++.|.+.|.++..... ..+..+-.-......+.++|+|..+++++..+.++.|.|+...+. .++ +....
T Consensus 295 gn~V~VID~~t~~~~~--~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAG--SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCC--cceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 3557777776510000 012222233456778999999988888888999999999988552 001 12222
Q ss_pred ccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480 271 AHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY 302 (325)
Q Consensus 271 ~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~ 302 (325)
- ...-...+|+++|.. +--.|..+.-|++..
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1 223345789888874 444566777777654
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.58 E-value=0.44 Score=46.31 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=66.8
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EE--ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCc
Q 020480 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RL--RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS 216 (325)
Q Consensus 140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 216 (325)
....|-.+..+..||.+-.. .+.+. .. -......++++-..+| .||.|+.+|.||+||- .+.
T Consensus 544 ~tflGls~n~lfriDpR~~~--------~k~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~---- 608 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSG--------NKLVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGK---- 608 (794)
T ss_pred ceEEEECCCceEEeccCCCC--------CceeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cch----
Confidence 45566678889999998621 11111 01 0123445666666554 6999999999999994 332
Q ss_pred ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480 217 LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (325)
Q Consensus 217 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~ 258 (325)
.....+.+-..+|..|..+.+|..+|||| +..|-+++..
T Consensus 609 -~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 609 -RAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred -hhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 23445667788999999999996555554 5678888763
No 346
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.23 Score=45.04 Aligned_cols=113 Identities=8% Similarity=-0.094 Sum_probs=69.4
Q ss_pred eEEEEecCCCCC------eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC----CccEEEEEeecCCCcEEEEEecCC
Q 020480 181 GYGLSWSKFKEG------HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH----EGVVEDVAWHLRHEYLFGSVGDDQ 250 (325)
Q Consensus 181 v~~l~~~p~~~~------~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~v~~v~~~p~~~~~l~s~~~dg 250 (325)
|.-+.+.|+... .-+.|-.|..|.-||.|..... .+...++| .....|.+-. +..++|+||.+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~G 451 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----KLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKG 451 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----eeeeeeccccccccccceeeec--CCceEEEeecCC
Confidence 555566665421 1234556788999999855331 11111222 1234444444 345899999999
Q ss_pred cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecce
Q 020480 251 YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRY 302 (325)
Q Consensus 251 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~ 302 (325)
.||+||--..+ .-..+.+...+|..|..+.+|++ .|..+..+.+-+++.
T Consensus 452 dIRLYdri~~~---AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 452 DIRLYDRIGRR---AKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred cEEeehhhhhh---hhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence 99999983333 23455778899999999999995 444455555544433
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.94 Score=40.62 Aligned_cols=141 Identities=13% Similarity=0.030 Sum_probs=90.1
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe--CCCcEE
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS--DDAQIC 204 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~dg~i~ 204 (325)
.-..+..++.+.+.++....+..|.+.|... ........ -......++++|++....++-. .++++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~----------~~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vs 143 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT----------NTVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVS 143 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcc----------cceeeEee-eccCCceEEECCCCCEEEEEecccCCceEE
Confidence 3456788888866777777788999999655 12122221 1225678999999985555555 368888
Q ss_pred EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCC-Cee-EeeccCCCeeEEEeC
Q 020480 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-PVQ-SVVAHQSEVGVSILN 282 (325)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~h~~~v~~i~~~ 282 (325)
+.|..+.. .......-..+ ..+++.|++...+++-..++.|.++|........ ... ... -...-..+.++
T Consensus 144 vid~~t~~------~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~ 215 (381)
T COG3391 144 VIDAATNK------VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVD 215 (381)
T ss_pred EEeCCCCe------EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEEC
Confidence 88887763 23332222223 7899999987677777789999999977665210 000 111 12234568899
Q ss_pred CCCC
Q 020480 283 ASFR 286 (325)
Q Consensus 283 p~~~ 286 (325)
|+|.
T Consensus 216 ~~g~ 219 (381)
T COG3391 216 PDGN 219 (381)
T ss_pred CCCC
Confidence 9887
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.37 E-value=0.91 Score=41.43 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=69.6
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 202 (325)
...-....+.++|.| +.+++ +.+|.-.+|.... ... .. .+....+.|.+.+ .+|+-...+.
T Consensus 30 ~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~----------~r~--k~---~G~g~~~vw~~~n--~yAv~~~~~~ 90 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALA----------WRN--KA---FGSGLSFVWSSRN--RYAVLESSST 90 (443)
T ss_dssp E-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTT----------TEE--EE---EEE-SEEEE-TSS--EEEEE-TTS-
T ss_pred CCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccC----------Ccc--cc---cCceeEEEEecCc--cEEEEECCCe
Confidence 345567899999988 56666 5688899998443 111 11 2455688999843 5888888899
Q ss_pred EEEE-eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480 203 ICLW-DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL 281 (325)
Q Consensus 203 i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~ 281 (325)
|.|+ ++.... ...+.. ...+..+-. | .+|+..+. +.|.+||..+++. +..+... +|..|.|
T Consensus 91 I~I~kn~~~~~-------~k~i~~-~~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~---i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 91 IKIYKNFKNEV-------VKSIKL-PFSVEKIFG---G-NLLGVKSS-DFICFYDWETGKL---IRRIDVS--AVKYVIW 152 (443)
T ss_dssp EEEEETTEE-T-------T------SS-EEEEE----S-SSEEEEET-TEEEEE-TTT--E---EEEESS---E-EEEEE
T ss_pred EEEEEcCcccc-------ceEEcC-CcccceEEc---C-cEEEEECC-CCEEEEEhhHcce---eeEEecC--CCcEEEE
Confidence 9996 443221 111111 112333332 5 45555544 4899999999883 7776532 4899999
Q ss_pred CCCCCc
Q 020480 282 NASFRL 287 (325)
Q Consensus 282 ~p~~~~ 287 (325)
+++|.+
T Consensus 153 s~~g~~ 158 (443)
T PF04053_consen 153 SDDGEL 158 (443)
T ss_dssp -TTSSE
T ss_pred ECCCCE
Confidence 999885
No 349
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.5 Score=42.96 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=74.2
Q ss_pred cCCCeeEEEecCCCC------cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC--CceEEEEecCCCCCeEE
Q 020480 124 HDGEVNRARYMPQNP------FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS--TEGYGLSWSKFKEGHLL 195 (325)
Q Consensus 124 h~~~v~~v~~~~~~~------~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~p~~~~~l~ 195 (325)
....|+-+.+.|+.. ..-+.|-.+..|.-||.+-+ ....+...++|. ..-..-++...+.+.++
T Consensus 374 ~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~--------~~~kl~~~q~kqy~~k~nFsc~aTT~sG~Iv 445 (644)
T KOG2395|consen 374 FEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ--------GKNKLAVVQSKQYSTKNNFSCFATTESGYIV 445 (644)
T ss_pred ccCCcceeeccCCcchhcccccccEEeecCCceEEeccccc--------CcceeeeeeccccccccccceeeecCCceEE
Confidence 334477777777541 12234567778888998852 111222233332 11112233334556899
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
.||.+|.|++||- .+.. ....+.+-..+|..|..+.+|..+|+| .+.++.+-+++-
T Consensus 446 vgS~~GdIRLYdr-i~~~-----AKTAlPgLG~~I~hVdvtadGKwil~T--c~tyLlLi~t~~ 501 (644)
T KOG2395|consen 446 VGSLKGDIRLYDR-IGRR-----AKTALPGLGDAIKHVDVTADGKWILAT--CKTYLLLIDTLI 501 (644)
T ss_pred EeecCCcEEeehh-hhhh-----hhhcccccCCceeeEEeeccCcEEEEe--cccEEEEEEEec
Confidence 9999999999997 3322 344567778899999999988755544 467788887764
No 350
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.92 E-value=0.11 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=27.1
Q ss_pred cEEEEEeecCCC--cEEEEEecCCcEEEEEccCC
Q 020480 229 VVEDVAWHLRHE--YLFGSVGDDQYLLIWDLRTP 260 (325)
Q Consensus 229 ~v~~v~~~p~~~--~~l~s~~~dg~i~iwd~~~~ 260 (325)
.|.++.|+|... .+|+.+-.-|.|.|+|+|+.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 588999998654 58999999999999999963
No 351
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=0.083 Score=51.61 Aligned_cols=98 Identities=15% Similarity=0.223 Sum_probs=67.2
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 272 (325)
.++.|+..|.+...|....- .+.+.-..-.++|.+++|+.+| .+++.|-.+|.|.+||+..++ +++.+..|
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL-----~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k---~l~~i~e~ 171 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNL-----GPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAK---ILKVITEH 171 (1206)
T ss_pred eEEEEcCchhhhhhhhhccc-----chhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCc---ceeeeeec
Confidence 68888989999999987642 2223333446789999999987 688899999999999999887 36777666
Q ss_pred CCCeeEEEe----CCCCCccCCCCceEEeeec
Q 020480 273 QSEVGVSIL----NASFRLSHEDTCTCTHRHS 300 (325)
Q Consensus 273 ~~~v~~i~~----~p~~~~~~~~d~~~~~~~~ 300 (325)
..+.+.+-+ +.+..+.. .|..+.+|+.
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt-~D~~Gsf~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLT-SDTGGSFWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEE-ccCCCceEEE
Confidence 655554433 23332322 3444556654
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.80 E-value=2 Score=36.34 Aligned_cols=135 Identities=16% Similarity=0.064 Sum_probs=76.5
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 218 (325)
+.|+.|+.+| +.+++... ...+.... +...|..+...|.-+ .++.-+ |+.++++++..........
T Consensus 8 ~~L~vGt~~G-l~~~~~~~---------~~~~~~i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSD---------PSKPTRIL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CEEEEEECCC-EEEEEecC---------CccceeEe--ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccc
Confidence 6888999999 89999832 11212222 233499999999877 555544 5999999987654321100
Q ss_pred ceE--------eeecCCccEEEEE--eecCCCcEEEEEecCCcEEEEEccCCCC-C-CCeeEeeccCCCeeEEEeCCCCC
Q 020480 219 AMQ--------IFKVHEGVVEDVA--WHLRHEYLFGSVGDDQYLLIWDLRTPSV-S-KPVQSVVAHQSEVGVSILNASFR 286 (325)
Q Consensus 219 ~~~--------~~~~~~~~v~~v~--~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~-~~~~~~~~h~~~v~~i~~~p~~~ 286 (325)
+.. ........+...+ -...+ ...+.+.....|.+|....... . +....+. -...+.+++|.++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i 151 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKI 151 (275)
T ss_pred cccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEE
Confidence 000 0111223344444 11233 3344455556999999887521 1 2344443 357788889986544
Q ss_pred ccC
Q 020480 287 LSH 289 (325)
Q Consensus 287 ~~~ 289 (325)
..+
T Consensus 152 ~v~ 154 (275)
T PF00780_consen 152 CVG 154 (275)
T ss_pred EEE
Confidence 333
No 353
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.63 E-value=1.2 Score=42.41 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=71.9
Q ss_pred CCeeEEEecCCCCcEEEEEe-----cCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480 126 GEVNRARYMPQNPFLIATKT-----VSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~-----~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
..+...+++|+|....++.. .|+ .|.+++... ...++ ..+. ..+.-.|+|++. .+.+.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg---------~~~~l--t~g~--~~t~PsWspDG~-~lw~v~ 415 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG---------VAVQV--LEGH--SLTRPSWSLDAD-AVWVVV 415 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC---------cceee--ecCC--CCCCceECCCCC-ceEEEe
Confidence 35778899999954444431 243 455555432 11211 2232 367889999977 455554
Q ss_pred CC------------CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc---cCCCC-
Q 020480 199 DD------------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL---RTPSV- 262 (325)
Q Consensus 199 ~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~---~~~~~- 262 (325)
.. +.+.+.+++.+.. .. .....|..+.|+|+|.++.+.. +|.|.+--+ ..+..
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge~------~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~ 484 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASAV------AS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYA 484 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCchh------hh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCcee
Confidence 22 2233333333211 11 2345799999999996554444 466766322 22220
Q ss_pred CCCeeEe-eccCCCeeEEEeCCCCCc
Q 020480 263 SKPVQSV-VAHQSEVGVSILNASFRL 287 (325)
Q Consensus 263 ~~~~~~~-~~h~~~v~~i~~~p~~~~ 287 (325)
......+ ..-...+.++.|.+++.+
T Consensus 485 l~~~~~l~~~l~~~~~~l~W~~~~~L 510 (591)
T PRK13616 485 LTNPREVGPGLGDTAVSLDWRTGDSL 510 (591)
T ss_pred ecccEEeecccCCccccceEecCCEE
Confidence 0011122 223344688999999876
No 354
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.60 E-value=2.6 Score=36.12 Aligned_cols=104 Identities=11% Similarity=0.012 Sum_probs=61.8
Q ss_pred cCCCceEEEEecCCCCCeEEEEeCCCc-------EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQ-------ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (325)
Q Consensus 176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~ 248 (325)
-|.-.+..|++.+++. .++..-..|. |-+++......... .+......-...+-+|++++++..+.+|+-.
T Consensus 160 ~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~-~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLP-APEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceecc-CChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 3677889999999876 4444433321 23333222100000 0001112345678999999988667788889
Q ss_pred CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR 286 (325)
Q Consensus 249 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 286 (325)
.+.+.+||..+++. +... .-..+..++-.+++-
T Consensus 238 Gg~~~~~d~~tg~~---~~~~--~l~D~cGva~~~~~f 270 (305)
T PF07433_consen 238 GGRVAVWDAATGRL---LGSV--PLPDACGVAPTDDGF 270 (305)
T ss_pred CCEEEEEECCCCCE---eecc--ccCceeeeeecCCce
Confidence 99999999999883 3332 123466667766663
No 355
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.33 E-value=0.17 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=27.1
Q ss_pred CCeeEEEecCCCC--cEEEEEecCCeEEEEeCCC
Q 020480 126 GEVNRARYMPQNP--FLIATKTVSAEVYVFDYSK 157 (325)
Q Consensus 126 ~~v~~v~~~~~~~--~~la~g~~dg~v~vwd~~~ 157 (325)
++|.+++|+|... .+|+..-..|.|.|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5788999998654 6888888889999999984
No 356
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.24 E-value=2.9 Score=35.13 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=80.6
Q ss_pred CeeEEEecCCCCcEEEEE--ecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 127 EVNRARYMPQNPFLIATK--TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g--~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
.+...+.++++..+.++. .....+.++.... .....+.+ ..+..-.|++++. +.+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-----------~~~~~~~g--~~l~~PS~d~~g~-~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-----------PVRPVLTG--GSLTRPSWDPDGW-VWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-----------cceeeccC--CccccccccCCCC-EEEEEcCCCceE
Confidence 677889999985444443 2334555555433 11111222 3677889999976 666666666666
Q ss_pred EEe-CCCCCCCCcccceEe-eecCCccEEEEEeecCCCcEEEEE--ecCCcEEEEEccCCCCC------CCeeEeeccCC
Q 020480 205 LWD-INAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSV--GDDQYLLIWDLRTPSVS------KPVQSVVAHQS 274 (325)
Q Consensus 205 iwd-~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~------~~~~~~~~h~~ 274 (325)
++. ...+.. ..... ...-...|.+++++|+|.++.+.. ..++.|.+--+...... .++........
T Consensus 91 ~~~~~~~g~~----~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 91 VVRDSASGTG----EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred EEEecCCCcc----eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 663 222221 11111 111112799999999997555544 24566777665432221 12222223356
Q ss_pred CeeEEEeCCCCCc
Q 020480 275 EVGVSILNASFRL 287 (325)
Q Consensus 275 ~v~~i~~~p~~~~ 287 (325)
.+.+++|.+++.+
T Consensus 167 ~v~~v~W~~~~~L 179 (253)
T PF10647_consen 167 DVTDVAWSDDSTL 179 (253)
T ss_pred cceeeeecCCCEE
Confidence 8899999999886
No 357
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.16 E-value=2.3 Score=37.90 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=60.0
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 218 (325)
..+.+++.+|.|..+|..+ + +.+....-.......... ++. .++.++.+|.+..+|..+++.
T Consensus 66 ~~v~v~~~~g~v~a~d~~t--------G--~~~W~~~~~~~~~~~p~v--~~~-~v~v~~~~g~l~ald~~tG~~----- 127 (377)
T TIGR03300 66 GKVYAADADGTVVALDAET--------G--KRLWRVDLDERLSGGVGA--DGG-LVFVGTEKGEVIALDAEDGKE----- 127 (377)
T ss_pred CEEEEECCCCeEEEEEccC--------C--cEeeeecCCCCcccceEE--cCC-EEEEEcCCCEEEEEECCCCcE-----
Confidence 4677778889999999776 2 223332221111112222 244 688888999999999988754
Q ss_pred ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262 (325)
Q Consensus 219 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 262 (325)
+...... ..+.+.... .+ ..++.++.+|.|..||.++++.
T Consensus 128 -~W~~~~~-~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 128 -LWRAKLS-SEVLSPPLV-AN-GLVVVRTNDGRLTALDAATGER 167 (377)
T ss_pred -eeeeccC-ceeecCCEE-EC-CEEEEECCCCeEEEEEcCCCce
Confidence 2222211 122211111 12 3566778899999999998874
No 358
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.01 E-value=4.2 Score=36.22 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=73.7
Q ss_pred CCeeEEEecCCCCcEEEEEe-----------cCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480 126 GEVNRARYMPQNPFLIATKT-----------VSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~-----------~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 193 (325)
.....|+|.++| +++++-. ..+ .|.+++-... ++.......+.........+++.+++ +
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg------dG~~d~~~vfa~~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADG------DGKYDKSNVFAEELSMVTGLAVAVGG--V 84 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC------CCCcceeEEeecCCCCccceeEecCC--E
Confidence 455678999988 5665532 223 6777764431 12222233343334456889998876 4
Q ss_pred EEEEeCCCcEEEEeCCCCCCCC-ccc-ceEeeec----CCccEEEEEeecCCCcEEEEEecC------------------
Q 020480 194 LLSGSDDAQICLWDINAAPKNK-SLE-AMQIFKV----HEGVVEDVAWHLRHEYLFGSVGDD------------------ 249 (325)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~-~~~-~~~~~~~----~~~~v~~v~~~p~~~~~l~s~~~d------------------ 249 (325)
+++ +.....++.|........ ... .+..+.. +......++|.|+|. +.++-+..
T Consensus 85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~ 162 (367)
T TIGR02604 85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGL 162 (367)
T ss_pred EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCccccc
Confidence 444 444433444554321110 001 1222222 124477899999984 54444321
Q ss_pred -CcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480 250 -QYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 250 -g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 287 (325)
|.|.-+|....+ +..+..--.-.+.++|+|+|.+
T Consensus 163 ~g~i~r~~pdg~~----~e~~a~G~rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 163 GGGLFRYNPDGGK----LRVVAHGFQNPYGHSVDSWGDV 197 (367)
T ss_pred CceEEEEecCCCe----EEEEecCcCCCccceECCCCCE
Confidence 334444443333 2222211233568999999986
No 359
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.98 E-value=0.12 Score=41.73 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=64.4
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 272 (325)
.++.|+.+|.|.+|....-.. ....+......|.++--.-+...+..+++.||.||.|++.-.+. +-....|
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~-----~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~---~g~~g~h 143 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGA-----HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV---LGYVGQH 143 (238)
T ss_pred eEEeecccceEEEecCCccch-----HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce---eeeeccc
Confidence 699999999999998873211 01111111122322221222224888999999999999987774 5555556
Q ss_pred C-CCeeEEEeCCCCCc--cC--CCCceEEeeecceeee
Q 020480 273 Q-SEVGVSILNASFRL--SH--EDTCTCTHRHSRYLLY 305 (325)
Q Consensus 273 ~-~~v~~i~~~p~~~~--~~--~~d~~~~~~~~~~~~~ 305 (325)
. .++.....+..+++ ++ |.+..++.|++..+.-
T Consensus 144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred cCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 6 55555555555553 33 6777888888766543
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.97 E-value=1.9 Score=37.25 Aligned_cols=101 Identities=11% Similarity=0.100 Sum_probs=60.5
Q ss_pred cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCC--CCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC-cE
Q 020480 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA--APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-YL 252 (325)
Q Consensus 176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg-~i 252 (325)
.+-..-..|+|+|++..++++=+..+.|.-|++.. +..... .....+....+..-.++...+| ++.+++...| .|
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v 237 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRV 237 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEeCCC-CEEEecccCCceE
Confidence 33444568999999985555556668899998863 111110 1112222233445556666666 5664444443 89
Q ss_pred EEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480 253 LIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282 (325)
Q Consensus 253 ~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~ 282 (325)
..|+.. ++ .+..+.-....+++++|-
T Consensus 238 ~~~~pd-G~---l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 238 VRFNPD-GK---LLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred EEECCC-Cc---EEEEEECCCCCCccceEe
Confidence 999988 55 366665554677888885
No 361
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.96 E-value=2.8 Score=39.65 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=57.1
Q ss_pred CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC--Ccccc----eEeeecCCccEEEEEeecCCCcEEEEEecCC
Q 020480 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN--KSLEA----MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ 250 (325)
Q Consensus 177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~----~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg 250 (325)
-....+.+.++|++...++++..+.+|.|.|+...... ..+.+ ..... -...-...+|.++| +.+.|-.-|.
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-vGlGPLHTaFDg~G-~aytslf~ds 396 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-LGLGPLHTAFDGRG-NAYTTLFLDS 396 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-cCCCcceEEECCCC-CEEEeEeecc
Confidence 34566889999999977777888999999999875421 00011 11111 12344567898887 6888888999
Q ss_pred cEEEEEccC
Q 020480 251 YLLIWDLRT 259 (325)
Q Consensus 251 ~i~iwd~~~ 259 (325)
.|..||+..
T Consensus 397 qv~kwn~~~ 405 (635)
T PRK02888 397 QIVKWNIEA 405 (635)
T ss_pred eeEEEehHH
Confidence 999999876
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.89 E-value=1.3 Score=36.98 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=79.1
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-----cCCCceEEEEecCCCCCeEEEEeC
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-----GHSTEGYGLSWSKFKEGHLLSGSD 199 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~~l~s~s~ 199 (325)
-+..-.|++...+ .++++--.++.+.++++........ ......+. .+...+-.++|+|.+. .|+.+-.
T Consensus 64 ~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~----~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE 137 (248)
T PF06977_consen 64 FGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLD----RADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKE 137 (248)
T ss_dssp -SSEEEEEE-STT-EEEEEETTTTEEEEEEE----TT------EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEE
T ss_pred CCCceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccc----hhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeC
Confidence 4667788888766 4555544588999998854211100 00011121 2445689999999988 5666677
Q ss_pred CCcEEEEeCCCCCCCCcccc-----eEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--ec-
Q 020480 200 DAQICLWDINAAPKNKSLEA-----MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VA- 271 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~- 271 (325)
.....+|.++.......+.. ..........+.+++++|...++++-...+..|..+| +.++ ++..+ ..
T Consensus 138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~---~~~~~~L~~g 213 (248)
T PF06977_consen 138 RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGR---VVSSLSLDRG 213 (248)
T ss_dssp SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT-----EEEEEE-STT
T ss_pred CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCC---EEEEEEeCCc
Confidence 77777777765111100000 0001123346889999998778888989999999999 4554 23333 21
Q ss_pred -cC-----CCeeEEEeCCCCCc
Q 020480 272 -HQ-----SEVGVSILNASFRL 287 (325)
Q Consensus 272 -h~-----~~v~~i~~~p~~~~ 287 (325)
|. ...-.|+|.++|.+
T Consensus 214 ~~gl~~~~~QpEGIa~d~~G~L 235 (248)
T PF06977_consen 214 FHGLSKDIPQPEGIAFDPDGNL 235 (248)
T ss_dssp GGG-SS---SEEEEEE-TT--E
T ss_pred ccCcccccCCccEEEECCCCCE
Confidence 11 24567999999875
No 363
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.85 E-value=1 Score=42.70 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=67.7
Q ss_pred ceEEEEecCCCCCeEEEEe-CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEee--cCCCcEEEEEecCCcEEEEE
Q 020480 180 EGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH--LRHEYLFGSVGDDQYLLIWD 256 (325)
Q Consensus 180 ~v~~l~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~s~~~dg~i~iwd 256 (325)
...-+.-+..+. ++... ....+.|||.+.+.. .....+ .....|.++.|. |+++ .+++.|-...|.++-
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~l----E~~~~f-~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVL----EYEESF-SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEE----EEeeee-cCCCceeeceeeecCCCC-EEEEEEcCcEEEEEE
Confidence 344444444443 44434 345699999987631 222233 346789999985 5664 555666677787775
Q ss_pred cc------CCCCCCCeeEe--eccC-CCeeEEEeCCCCCccCCCCceEEeeec
Q 020480 257 LR------TPSVSKPVQSV--VAHQ-SEVGVSILNASFRLSHEDTCTCTHRHS 300 (325)
Q Consensus 257 ~~------~~~~~~~~~~~--~~h~-~~v~~i~~~p~~~~~~~~d~~~~~~~~ 300 (325)
-. ......++..+ ..|+ .+|.+..|-++|.+..+......+++.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 42 11222344444 3343 589999999999986555666666543
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.76 E-value=1 Score=40.40 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=68.4
Q ss_pred ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-------------------------------------CcccceEe
Q 020480 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-------------------------------------KSLEAMQI 222 (325)
Q Consensus 180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-------------------------------------~~~~~~~~ 222 (325)
.|+.+.|++... -|+.|...|.|-||.....+.. ..+.+...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 478888988877 7999999999888864332111 01123333
Q ss_pred eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--ec------cCCCeeEEEeCC-----CCC---
Q 020480 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VA------HQSEVGVSILNA-----SFR--- 286 (325)
Q Consensus 223 ~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~------h~~~v~~i~~~p-----~~~--- 286 (325)
+....+.|++++.+.-| ++|.|..+|.+.|.|+|.... +..- .. ..+.|+++.|.. ++.
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPav---I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAV---IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEE---EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeE---EeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 44557899999998654 899999999999999998763 3331 11 234688888873 221
Q ss_pred --ccCCCCceEEeeec
Q 020480 287 --LSHEDTCTCTHRHS 300 (325)
Q Consensus 287 --~~~~~d~~~~~~~~ 300 (325)
+.|...|.+..+.+
T Consensus 157 ~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKI 172 (395)
T ss_dssp EEEEEETTSEEEEEEE
T ss_pred EEEEEeCCCCEEEEEE
Confidence 24445566665544
No 365
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.66 E-value=0.72 Score=37.95 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=63.8
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 218 (325)
..+++++.++.|..||..+ + +.+..+.. ...+.... ...+. .++.++.++.+..+|..++..
T Consensus 37 ~~v~~~~~~~~l~~~d~~t--------G--~~~W~~~~-~~~~~~~~-~~~~~-~v~v~~~~~~l~~~d~~tG~~----- 98 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKT--------G--KVLWRFDL-PGPISGAP-VVDGG-RVYVGTSDGSLYALDAKTGKV----- 98 (238)
T ss_dssp TEEEEEETTSEEEEEETTT--------S--EEEEEEEC-SSCGGSGE-EEETT-EEEEEETTSEEEEEETTTSCE-----
T ss_pred CEEEEEcCCCEEEEEECCC--------C--CEEEEeec-ccccccee-eeccc-ccccccceeeeEecccCCcce-----
Confidence 3566668999999999876 2 33444432 11111111 11233 577777888999999888853
Q ss_pred ceEee-ecCC---ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec
Q 020480 219 AMQIF-KVHE---GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA 271 (325)
Q Consensus 219 ~~~~~-~~~~---~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 271 (325)
+... .... ...........+ ..++.+..++.|..+|+++++. +.....
T Consensus 99 -~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~---~w~~~~ 150 (238)
T PF13360_consen 99 -LWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKL---LWKYPV 150 (238)
T ss_dssp -EEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEE---EEEEES
T ss_pred -eeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcE---EEEeec
Confidence 3331 2110 111112222224 4677788899999999999883 555544
No 366
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.63 E-value=2.8 Score=38.95 Aligned_cols=120 Identities=11% Similarity=0.184 Sum_probs=69.9
Q ss_pred cCCCceEEEEecCCC----CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC---Cc--cEEEEEeecCCCcEEEEE
Q 020480 176 GHSTEGYGLSWSKFK----EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH---EG--VVEDVAWHLRHEYLFGSV 246 (325)
Q Consensus 176 ~h~~~v~~l~~~p~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~--~v~~v~~~p~~~~~l~s~ 246 (325)
|.-..|+++.|.|-+ + .+++......|.||.+........ +.+.....+ .- --..+.|||... +|+.=
T Consensus 54 GqFEhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s~~e~~-K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VL 130 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPSTTERN-KLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVL 130 (671)
T ss_pred eccceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccCccccc-cceeeeeeeccCCcccCCCcccccCCCc-eEEEE
Confidence 334568999999963 4 466677788999999873321100 111111111 11 124567999864 66555
Q ss_pred ecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeec
Q 020480 247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHS 300 (325)
Q Consensus 247 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~ 300 (325)
.....-.+++++.... .+..--...+.|.|.+|.++|.. ..|..-...+||-
T Consensus 131 T~~dvSV~~sV~~d~s--rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSS--RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ecCceeEeeeeeeCCc--eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 5555555777776653 23332234678999999999983 2233344555653
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.53 E-value=0.93 Score=41.35 Aligned_cols=130 Identities=13% Similarity=0.134 Sum_probs=63.4
Q ss_pred CCeeEEEecCCCCcEEEEEecCCeEEEE-eCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 126 GEVNRARYMPQNPFLIATKTVSAEVYVF-DYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~dg~v~vw-d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
+......|.+.+ .+|+-...+.|.++ ++.. .....+... ..+..+-. |. +|...+. +.|.
T Consensus 69 G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~-----------~~~k~i~~~-~~~~~If~---G~-LL~~~~~-~~i~ 129 (443)
T PF04053_consen 69 GSGLSFVWSSRN--RYAVLESSSTIKIYKNFKN-----------EVVKSIKLP-FSVEKIFG---GN-LLGVKSS-DFIC 129 (443)
T ss_dssp EE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE------------TT-----S-S-EEEEE----SS-SEEEEET-TEEE
T ss_pred CceeEEEEecCc--cEEEEECCCeEEEEEcCcc-----------ccceEEcCC-cccceEEc---Cc-EEEEECC-CCEE
Confidence 455667888854 68887778899996 4432 111222211 12333322 55 5555554 4899
Q ss_pred EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC--------CCCCCeeEeeccCCCe
Q 020480 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP--------SVSKPVQSVVAHQSEV 276 (325)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v 276 (325)
+||..++ ..++.+.. ..|..+.|++++ .++|-.+. ..+.|++.... .....+..+......|
T Consensus 130 ~yDw~~~------~~i~~i~v--~~vk~V~Ws~~g-~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~I 199 (443)
T PF04053_consen 130 FYDWETG------KLIRRIDV--SAVKYVIWSDDG-ELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERI 199 (443)
T ss_dssp EE-TTT--------EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--
T ss_pred EEEhhHc------ceeeEEec--CCCcEEEEECCC-CEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEeccee
Confidence 9999987 34555543 248999999987 56666654 46777665443 0000133333335677
Q ss_pred eEEEeCCC
Q 020480 277 GVSILNAS 284 (325)
Q Consensus 277 ~~i~~~p~ 284 (325)
.+.+|..+
T Consensus 200 kSg~W~~d 207 (443)
T PF04053_consen 200 KSGCWVED 207 (443)
T ss_dssp SEEEEETT
T ss_pred EEEEEEcC
Confidence 77788765
No 368
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.14 E-value=6.2 Score=35.40 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=89.2
Q ss_pred CeeEEEecCCCCcEEEEEe--cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 127 EVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
.-..+++.+++..+.++-. .++.+.+.|..+ .........-..+ ..+++.|++...+++-..++.|.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t----------~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT----------NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCC----------CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 5667899998865655555 367888888776 2333333322234 89999999995555555889999
Q ss_pred EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC--CcEEEEEccCCCCCCCeeE-eeccCCCeeEEEe
Q 020480 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLIWDLRTPSVSKPVQS-VVAHQSEVGVSIL 281 (325)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~-~~~h~~~v~~i~~ 281 (325)
+.|........ ...... ..-...-..+.++|++....++...+ +.+...|..+... ... ...-+.....+.+
T Consensus 186 vi~~~~~~v~~-~~~~~~-~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v---~~~~~~~~~~~~~~v~~ 260 (381)
T COG3391 186 VIDTSGNSVVR-GSVGSL-VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV---TATDLPVGSGAPRGVAV 260 (381)
T ss_pred EEeCCCcceec-cccccc-cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE---EEeccccccCCCCceeE
Confidence 99976542210 000001 11223345688899987566666555 6888888888763 222 1111114566788
Q ss_pred CCCCCc
Q 020480 282 NASFRL 287 (325)
Q Consensus 282 ~p~~~~ 287 (325)
+|.|..
T Consensus 261 ~p~g~~ 266 (381)
T COG3391 261 DPAGKA 266 (381)
T ss_pred CCCCCE
Confidence 898884
No 369
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.12 E-value=4.8 Score=36.49 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=36.3
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN 209 (325)
Q Consensus 149 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~ 209 (325)
.|++|+... .++.++.--.+.+.++.|..+. .|+....||.++++|+.
T Consensus 62 ~I~iys~sG-----------~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSG-----------KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCC-----------CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCC
Confidence 599999876 3344443233789999998864 47778899999999985
No 370
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.82 E-value=0.066 Score=51.39 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=82.7
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE---EecCCCceEEEEecCCC--CCeEEEE
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR---LRGHSTEGYGLSWSKFK--EGHLLSG 197 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~p~~--~~~l~s~ 197 (325)
+.+|.|-.+.|-......++ ..-|.+.||++.... +...+... .......+.-+.|.|-- .-.+..+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~------G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~ 201 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQ------GEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG 201 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhc------cccccceEEeecCcCCCCcceeeecccccccceeeec
Confidence 46677777777653322222 345788899987522 22222211 12233444566676632 1245556
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEE-----------eecCCCcEEEEEecCCcEEEEEccCCCC--CC
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVA-----------WHLRHEYLFGSVGDDQYLLIWDLRTPSV--SK 264 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~-----------~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~ 264 (325)
-.++.+++-...... ...+.+|...+..++ .+|+| ..||.++.||.+++|.+.-... .+
T Consensus 202 ~~~~~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~r 273 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHR 273 (1283)
T ss_pred cCCCceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHh
Confidence 677888887766532 123444655544443 57887 7999999999999998763221 12
Q ss_pred CeeEeeccC-CCeeEEEeCCCC
Q 020480 265 PVQSVVAHQ-SEVGVSILNASF 285 (325)
Q Consensus 265 ~~~~~~~h~-~~v~~i~~~p~~ 285 (325)
.++..+.|. .+-.|.-|+.+.
T Consensus 274 clhewkphd~~p~vC~lc~~~~ 295 (1283)
T KOG1916|consen 274 CLHEWKPHDKHPRVCWLCHKQE 295 (1283)
T ss_pred hhhccCCCCCCCceeeeecccc
Confidence 345556676 444444455443
No 371
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.59 E-value=4.9 Score=34.69 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=70.3
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
-.+.+..+.-+++| .+++++..-....-|+.-. ....+. -......|..+.|.|++. +.+ ....|.|
T Consensus 143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~--------~~w~~~--~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~ 209 (302)
T PF14870_consen 143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ--------TTWQPH--NRNSSRRIQSMGFSPDGN-LWM-LARGGQI 209 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------SS-EEE--E--SSS-EEEEEE-TTS--EEE-EETTTEE
T ss_pred CcceeEeEEECCCC-cEEEEECcccEEEEecCCC--------ccceEE--ccCccceehhceecCCCC-EEE-EeCCcEE
Confidence 44678888888888 6777765544445676543 112222 223457899999999977 544 4488888
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA 283 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p 283 (325)
+.=+.......+. .++.......-.+.+++|.+.+ .+.|+|+ .|.+ +.....++.++.......-.+-+..|.|.+
T Consensus 210 ~~s~~~~~~~~w~-~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~ 285 (302)
T PF14870_consen 210 QFSDDPDDGETWS-EPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN 285 (302)
T ss_dssp EEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE
T ss_pred EEccCCCCccccc-cccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcC
Confidence 8877221110000 0111111223358899999875 4665555 4543 334444553211221122344577888865
Q ss_pred CCC-ccCCCCceE
Q 020480 284 SFR-LSHEDTCTC 295 (325)
Q Consensus 284 ~~~-~~~~~d~~~ 295 (325)
..+ +.-+.++.+
T Consensus 286 ~~~gf~lG~~G~l 298 (302)
T PF14870_consen 286 PDKGFVLGQDGVL 298 (302)
T ss_dssp TTEEEEE-STTEE
T ss_pred CCceEEECCCcEE
Confidence 433 344455543
No 372
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.58 E-value=1.7 Score=35.72 Aligned_cols=98 Identities=12% Similarity=0.000 Sum_probs=55.6
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecC--CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeee
Q 020480 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGH--STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224 (325)
Q Consensus 147 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 224 (325)
+|.|..+|..+ .+.+....-- ......... +.+. .+++++.++.+..||..+++. +..+.
T Consensus 2 ~g~l~~~d~~t----------G~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~------~W~~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRT----------GKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKV------LWRFD 63 (238)
T ss_dssp TSEEEEEETTT----------TEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEE------EEEEE
T ss_pred CCEEEEEECCC----------CCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCE------EEEee
Confidence 57888888865 2223333211 111121122 2344 678888999999999988843 43333
Q ss_pred cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS 268 (325)
Q Consensus 225 ~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 268 (325)
. ...+...... .+ ..++.++.++.++.+|.++++. +..
T Consensus 64 ~-~~~~~~~~~~-~~-~~v~v~~~~~~l~~~d~~tG~~---~W~ 101 (238)
T PF13360_consen 64 L-PGPISGAPVV-DG-GRVYVGTSDGSLYALDAKTGKV---LWS 101 (238)
T ss_dssp C-SSCGGSGEEE-ET-TEEEEEETTSEEEEEETTTSCE---EEE
T ss_pred c-cccccceeee-cc-cccccccceeeeEecccCCcce---eee
Confidence 2 1111111112 23 3556667888999999999884 555
No 373
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.55 E-value=11 Score=36.80 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=52.5
Q ss_pred CceEEEEecCCCCCeEEEEeCCCcEEEEeCCC-CCCC------CcccceEe------e-ecCCccEEEEEeecCC--CcE
Q 020480 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINA-APKN------KSLEAMQI------F-KVHEGVVEDVAWHLRH--EYL 242 (325)
Q Consensus 179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~-~~~~------~~~~~~~~------~-~~~~~~v~~v~~~p~~--~~~ 242 (325)
-.|..+..+|.|. +++..+..|.+-+.=.+. +..+ ..+.|... + ..+...|..+.|||.+ ...
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999999 677777655443332221 1110 11111111 1 1334678999999964 367
Q ss_pred EEEEecCCcEEEEEccCCCC
Q 020480 243 FGSVGDDQYLLIWDLRTPSV 262 (325)
Q Consensus 243 l~s~~~dg~i~iwd~~~~~~ 262 (325)
|+.=..|+++|+||+.....
T Consensus 164 l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEEecCCEEEEEecCCCCC
Confidence 77888999999999976553
No 374
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.45 E-value=3.4 Score=34.34 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=43.4
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCC
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA 211 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~ 211 (325)
++++.|+..|.+++.+..+ +. ....+..-..--......+++. ++..|+.|+..+.-|.++.
T Consensus 64 dfVV~GCy~g~lYfl~~~t--------Gs--~~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKT--------GS--QIWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred CEEEEEEccCcEEEEEecc--------hh--heeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEeccccc
Confidence 5799999999999999987 32 2333332211112233455666 8999999999999999876
No 375
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.11 E-value=7.4 Score=37.11 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=67.3
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEe--cCCCCCeEEEEeCCCcEE
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW--SKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~~l~s~s~dg~i~ 204 (325)
...-+.-+.-+ +.-++-+....+.|||... +...-...+ ...+.|.+++| .|+++ .+++.+..+.|.
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~--------~~lE~~~~f-~~~~~I~dLDWtst~d~q-siLaVGf~~~v~ 99 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRS--------GVLEYEESF-SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVL 99 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCC--------cEEEEeeee-cCCCceeeceeeecCCCC-EEEEEEcCcEEE
Confidence 33444444444 2333333345899999987 222222233 34678999999 45677 677778888888
Q ss_pred EEeCCCCC---CCCcccceEee--ecCC-ccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 205 LWDINAAP---KNKSLEAMQIF--KVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 205 iwd~~~~~---~~~~~~~~~~~--~~~~-~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
++--.... ......+++.+ ..++ .+|.+..|.++| .++ .|+ +..+.|+|-.-
T Consensus 100 l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~Lv-V~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 100 LYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLV-VGS-GNQLFVFDKWL 157 (631)
T ss_pred EEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEE-EEe-CCEEEEECCCc
Confidence 88542110 11111223332 3333 578899999987 333 333 45678887543
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.09 E-value=3.8 Score=35.46 Aligned_cols=114 Identities=9% Similarity=0.047 Sum_probs=65.1
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-cE
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-QI 203 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-~i 203 (325)
-..-+.|+|+|++..++++=+..+.|+-|++....... ........+....+..=.++...+|. +.+++...| .|
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~---~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v 237 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI---GGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRV 237 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc---CCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceE
Confidence 34557899999997666665666888888876310000 01111122222345555677777777 554444444 89
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEee-cCCCcEEEEEecC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH-LRHEYLFGSVGDD 249 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~s~~~d 249 (325)
.+|+.. + ..+..+.-....+.+++|- |+...+++++...
T Consensus 238 ~~~~pd-G------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 238 VRFNPD-G------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEECCC-C------cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 999988 4 2344444444566777774 3333455555443
No 377
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.56 E-value=5.1 Score=36.03 Aligned_cols=131 Identities=7% Similarity=-0.040 Sum_probs=70.2
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccc
Q 020480 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (325)
Q Consensus 140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 219 (325)
.+.+++.+|.+..+|..+ + +.+.+.. ......+.. .+. .++.++.+|.+..+|..++...+
T Consensus 258 ~vy~~~~~g~l~ald~~t--------G--~~~W~~~--~~~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W---- 318 (394)
T PRK11138 258 VVYALAYNGNLVALDLRS--------G--QIVWKRE--YGSVNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELW---- 318 (394)
T ss_pred EEEEEEcCCeEEEEECCC--------C--CEEEeec--CCCccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEE----
Confidence 455567788888888876 2 1122211 111111222 234 67788889999999998774321
Q ss_pred eEeeecCC-ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee-EEEeCCCCCc-cCCCCceEE
Q 020480 220 MQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG-VSILNASFRL-SHEDTCTCT 296 (325)
Q Consensus 220 ~~~~~~~~-~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~i~~~p~~~~-~~~~d~~~~ 296 (325)
....-. ....+.... + ..++.++.+|.|++.|..+++. +...+.....+. +..+. ++++ .++.++.+.
T Consensus 319 --~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~~---~~~~~~~~~~~~s~P~~~-~~~l~v~t~~G~l~ 389 (394)
T PRK11138 319 --SQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGRF---VAQQKVDSSGFLSEPVVA-DDKLLIQARDGTVY 389 (394)
T ss_pred --cccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCCE---EEEEEcCCCcceeCCEEE-CCEEEEEeCCceEE
Confidence 111100 111111122 3 3677889999999999999873 555443322232 12222 3343 566666555
Q ss_pred ee
Q 020480 297 HR 298 (325)
Q Consensus 297 ~~ 298 (325)
..
T Consensus 390 ~~ 391 (394)
T PRK11138 390 AI 391 (394)
T ss_pred EE
Confidence 43
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.51 E-value=7.8 Score=32.81 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=67.9
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeE-EEEeCCCCCCCCCCCCCCCCc-------EEEecCCCceEEEEecCCCCCe
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEV-YVFDYSKHPSKPPLDGACSPD-------LRLRGHSTEGYGLSWSKFKEGH 193 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v-~vwd~~~~~~~~~~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~~ 193 (325)
..-+.....+.|+|.-+.-++.+..-|+- .++|... . ..++ +.+-+| =.|+|+|. +
T Consensus 64 ~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~--------~-~~pv~~~s~~~RHfyGH------Gvfs~dG~-~ 127 (366)
T COG3490 64 TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNG--------A-QEPVTLVSQEGRHFYGH------GVFSPDGR-L 127 (366)
T ss_pred eecccccCCeecCCCCcceEEEEecCCceEEEECCCC--------C-cCcEEEecccCceeecc------cccCCCCc-E
Confidence 34445556788999877788888887764 6788875 1 1222 122233 25899998 5
Q ss_pred EEEEeC-----CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEE
Q 020480 194 LLSGSD-----DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV 246 (325)
Q Consensus 194 l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~ 246 (325)
|...-. -|.|-|||.+.+- ..+-.+..|.-.-..+.|.++|. .++.+
T Consensus 128 LYATEndfd~~rGViGvYd~r~~f-----qrvgE~~t~GiGpHev~lm~DGr-tlvva 179 (366)
T COG3490 128 LYATENDFDPNRGVIGVYDAREGF-----QRVGEFSTHGIGPHEVTLMADGR-TLVVA 179 (366)
T ss_pred EEeecCCCCCCCceEEEEeccccc-----ceecccccCCcCcceeEEecCCc-EEEEe
Confidence 555432 3789999998542 34556777877888899999985 54443
No 379
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.40 E-value=5.3 Score=38.51 Aligned_cols=129 Identities=9% Similarity=0.037 Sum_probs=79.6
Q ss_pred cCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCC-------CCC---CCCCCCCCcEEEecCCCceEEEEec--CCC
Q 020480 124 HDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHP-------SKP---PLDGACSPDLRLRGHSTEGYGLSWS--KFK 190 (325)
Q Consensus 124 h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~-------~~~---~~~~~~~~~~~~~~h~~~v~~l~~~--p~~ 190 (325)
.+..|+.|....- +...|+.|..||.|.+|.+..-. ... ......+|-..+. ....+++++++ ...
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS 177 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc
Confidence 3345666665543 33688899999999999663210 000 0001223444444 23478999998 666
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC--Cc---EEEEEecCCcEEEEEc
Q 020480 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH--EY---LFGSVGDDQYLLIWDL 257 (325)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~---~l~s~~~dg~i~iwd~ 257 (325)
+ ++|.++....|.||-+........ ...-..+...|-+|+|-++. +. .+++++-.|.+-+|++
T Consensus 178 r-lIAVSsNs~~VTVFaf~l~~~r~~---~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 R-LIAVSSNSQEVTVFAFALVDERFY---HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred e-EEEEecCCceEEEEEEeccccccc---cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6 888888888899887665321110 11011255568888887643 22 7778899999999888
No 380
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.26 E-value=7.3 Score=32.00 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=62.8
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC---C-CceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH---S-TEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 129 ~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h---~-~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
+.++|..+...+..+-+.+-.|.-||...+..... ..+.+..++.. . ...-.++....|. +++++-..++|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s---nr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS---NRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQ 236 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCccccc---CcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEE
Confidence 56788877666777777888888888554221110 11222222211 1 1112344455666 788888889999
Q ss_pred EEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR 238 (325)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 238 (325)
..|..+++ .+..+.-....|+++||--.
T Consensus 237 ~~dp~tGK------~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 237 KVDPTTGK------ILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EECCCCCc------EEEEEEcCCCceEEEEecCC
Confidence 99999884 46666666888999999643
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.21 E-value=11 Score=34.05 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=65.6
Q ss_pred eEEEecCCCCcEEEEE-ecCC----eEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceEEEEecCCCCCeEEEEeCC--
Q 020480 129 NRARYMPQNPFLIATK-TVSA----EVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEGHLLSGSDD-- 200 (325)
Q Consensus 129 ~~v~~~~~~~~~la~g-~~dg----~v~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~d-- 200 (325)
....++|++ +++|.+ +..| .++++|+.+ + +.+. .+.. .....+.|.+++..++.+...+
T Consensus 127 ~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~t--------g--~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 127 GGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLET--------G--KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEETTTS-SEEEEEEEETTSSEEEEEEEETTT--------T--EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTT
T ss_pred eeeeECCCC-CEEEEEecCCCCceEEEEEEECCC--------C--cCcCCcccc--cccceEEEeCCCCEEEEEEeCccc
Confidence 357889999 455543 4444 599999987 2 1121 1111 1123499999988555555333
Q ss_pred --------CcEEEEeCCCCCCCCcccceEeeecCCcc--EEEEEeecCCCcEEEEEecCCc---EEEEEccCC
Q 020480 201 --------AQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLRHEYLFGSVGDDQY---LLIWDLRTP 260 (325)
Q Consensus 201 --------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~s~~~dg~---i~iwd~~~~ 260 (325)
..|+.|.+.+... .....+...... ...+..++++..+++......+ +.+.|+...
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~----~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQS----EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GG----G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred ccccCCCCcEEEEEECCCChH----hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 2377788776533 212334433322 5678889988666665554444 777777764
No 382
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.20 E-value=3.1 Score=32.59 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=25.6
Q ss_pred ceEEEEecCCC-----CCeEEEEeCCCcEEEEeCCC
Q 020480 180 EGYGLSWSKFK-----EGHLLSGSDDAQICLWDINA 210 (325)
Q Consensus 180 ~v~~l~~~p~~-----~~~l~s~s~dg~i~iwd~~~ 210 (325)
.+.+++|+|.| .-+|++.+.+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999964 34788999999999998664
No 383
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.14 E-value=10 Score=34.27 Aligned_cols=172 Identities=13% Similarity=0.061 Sum_probs=99.6
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN 209 (325)
Q Consensus 130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~ 209 (325)
.+-|...+..++| ...|.+.=|-+....+ -.|+.--....++|.++.|++++. .++.--.+.+|.+++..
T Consensus 27 gvFfDDaNkqlfa--vrSggatgvvvkgpnd-------DVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 27 GVFFDDANKQLFA--VRSGGATGVVVKGPND-------DVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFI 96 (657)
T ss_pred ceeeccCcceEEE--EecCCeeEEEEeCCCC-------CCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecC
Confidence 3444444422333 3455566666654211 122222224557999999999998 89999999999999985
Q ss_pred CCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--
Q 020480 210 AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-- 287 (325)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-- 287 (325)
...... ...+..+..+..|...+|..+ .-+|--+..| +-+|.....+. .+...+.|...|+-..|+++..+
T Consensus 97 ~d~~~l--~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y~v~pekr--slRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 97 PDNSQL--EYTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFYQVLPEKR--SLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred CCchhh--HHHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEEEEchhhh--hhhhhhhcccCccEEEEccccceEe
Confidence 442210 112223334556888899864 3455544443 66776655443 46666778888999999998774
Q ss_pred cC-C-CCceEEeeecce-eeeccCeeEEEeecCC
Q 020480 288 SH-E-DTCTCTHRHSRY-LLYKFPFFVLVFPLFP 318 (325)
Q Consensus 288 ~~-~-~d~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (325)
.+ + ...+..-..++. ...+.|...+..|-.|
T Consensus 170 L~t~~~~n~lnpf~~~~~~v~kLPkfe~~~p~~~ 203 (657)
T KOG2377|consen 170 LSTTVLENVLNPFHFRAGTMSKLPKFEIELPAAP 203 (657)
T ss_pred eeccccccccccEEEeeceeeeccceeecCCCCc
Confidence 22 2 111111122222 3456777777766553
No 384
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.85 E-value=4.9 Score=36.30 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=53.1
Q ss_pred EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEE-EEee-c-------------
Q 020480 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED-VAWH-L------------- 237 (325)
Q Consensus 173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~-p------------- 237 (325)
.+......+.++..+|.+. +.++...-|.|.++|+..+. .++.+++....=.. +.-. .
T Consensus 302 ~l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~------vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI------VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred eeccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh------hhhhhccCccceEEEEEeecccccccccccccCC
Confidence 3445566789999999987 78887778999999998873 23334443221100 0000 0
Q ss_pred ---CCCcEEEEEecCCcEEEEEccCCCC
Q 020480 238 ---RHEYLFGSVGDDQYLLIWDLRTPSV 262 (325)
Q Consensus 238 ---~~~~~l~s~~~dg~i~iwd~~~~~~ 262 (325)
....+++-+..-|.|.||.++++..
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCCCE
Confidence 0112445566789999999998874
No 385
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.67 E-value=0.18 Score=48.56 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=72.9
Q ss_pred cCCCeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEE-----------ecCCC
Q 020480 124 HDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLS-----------WSKFK 190 (325)
Q Consensus 124 h~~~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-----------~~p~~ 190 (325)
....+.-|.|+|- +.-++..+-.++.|++...... ....+.+|...+.+++ .+|+|
T Consensus 179 ~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra-----------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG 247 (1283)
T KOG1916|consen 179 YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA-----------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDG 247 (1283)
T ss_pred CCCCcceeeecccccccceeeeccCCCceeEeeechH-----------HHHHHHhcCCCcccHHHHhhchhhheeeCCCC
Confidence 4455677778773 2245667777889988777651 1123445766655543 58888
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCcc--EEEEEeecC-------CC-cEEEEEe-cCCcEEEEEccC
Q 020480 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLR-------HE-YLFGSVG-DDQYLLIWDLRT 259 (325)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~-------~~-~~l~s~~-~dg~i~iwd~~~ 259 (325)
. .|+.++.||.++.|.+.-... ....|++.++.|... |+.+ ++.. +. .++++++ ...-+++|....
T Consensus 248 t-v~a~a~~dG~v~f~Qiyi~g~-~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 248 T-VFAWAISDGSVGFYQIYITGK-IVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred c-EEEEeecCCccceeeeeeecc-ccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 8 899999999999887653321 112456666666532 2222 2211 01 2334444 345588888766
Q ss_pred CCC
Q 020480 260 PSV 262 (325)
Q Consensus 260 ~~~ 262 (325)
.+|
T Consensus 325 w~C 327 (1283)
T KOG1916|consen 325 WQC 327 (1283)
T ss_pred hhh
Confidence 655
No 386
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.62 E-value=0.039 Score=49.32 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=96.5
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeC
Q 020480 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208 (325)
Q Consensus 129 ~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~ 208 (325)
-...|-|.+.+ ++.++.+..|..||-.. +..... .-++....++|..++...++.+-..+.+.+||+
T Consensus 38 i~~~w~~e~~n-lavaca~tiv~~YD~ag-----------q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 38 IIHRWRPEGHN-LAVACANTIVIYYDKAG-----------QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred ceeeEecCCCc-eehhhhhhHHHhhhhhc-----------ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechh
Confidence 34567777744 77778888899999765 111111 234566788999888866777888899999999
Q ss_pred CCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-
Q 020480 209 NAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL- 287 (325)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~- 287 (325)
.+... +.+..-..|.... +.|++.. ..++.+...|.+.|++.++.+. +.....|...+.+++|.+.+..
T Consensus 105 n~eyt----qqLE~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR~---iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 105 NSEYT----QQLESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSRR---IIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred hhhhH----HHHhccCcchHHH--HhhccCC-ccccccccccceEEEeccchhh---hhhhcccccceeEEEecccceee
Confidence 86421 0111111122222 6788865 4777888999999999998773 4444458899999999997763
Q ss_pred cCCCCceE
Q 020480 288 SHEDTCTC 295 (325)
Q Consensus 288 ~~~~d~~~ 295 (325)
.++.|.++
T Consensus 175 l~dcd~~L 182 (615)
T KOG2247|consen 175 LCDCDNTL 182 (615)
T ss_pred ecCcHHHH
Confidence 55555433
No 387
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.95 E-value=2.8 Score=41.96 Aligned_cols=105 Identities=9% Similarity=-0.037 Sum_probs=64.6
Q ss_pred CceEEEEecCCCCCe-EEEEeCCCcEEEEeCCCCCCCCcccceEeee------cCCccEEEEEeecCCCcEEEEEecCCc
Q 020480 179 TEGYGLSWSKFKEGH-LLSGSDDAQICLWDINAAPKNKSLEAMQIFK------VHEGVVEDVAWHLRHEYLFGSVGDDQY 251 (325)
Q Consensus 179 ~~v~~l~~~p~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~~~p~~~~~l~s~~~dg~ 251 (325)
-++..+..+++.... ++..+.+-.|..||++.-....... ...+. .......++.|+|.-+.-.|.+..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345566666665422 2233344579999998754321100 11111 123446778999987667788899999
Q ss_pred EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480 252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 287 (325)
|++..+..... .+..+ ......++++|+|.|+-
T Consensus 180 l~V~~~~~~~~--~v~s~-p~t~~~Tav~WSprGKQ 212 (1405)
T KOG3630|consen 180 LRVKSTKQLAQ--NVTSF-PVTNSQTAVLWSPRGKQ 212 (1405)
T ss_pred hhhhhhhhhhh--hhccc-CcccceeeEEeccccce
Confidence 99988775543 23332 34567899999999983
No 388
>PHA02713 hypothetical protein; Provisional
Probab=88.94 E-value=2.8 Score=39.69 Aligned_cols=63 Identities=5% Similarity=-0.016 Sum_probs=32.7
Q ss_pred cEEEEEecC------CcEEEEEccC-CCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCc--eEEeeecceeeec
Q 020480 241 YLFGSVGDD------QYLLIWDLRT-PSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTC--TCTHRHSRYLLYK 306 (325)
Q Consensus 241 ~~l~s~~~d------g~i~iwd~~~-~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~--~~~~~~~~~~~~~ 306 (325)
.+.+.||.+ ..+..||..+ .+ +..+..+.........+++ +|++ .||.++ ++-.++...-.|.
T Consensus 465 ~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 465 DIYVVCDIKDEKNVKTCIFRYNTNTYNG-WELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred EEEEEeCCCCCCccceeEEEecCCCCCC-eeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 567777754 2467899887 44 3333333322223333333 3443 677676 4444555555554
No 389
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.83 E-value=19 Score=34.38 Aligned_cols=103 Identities=10% Similarity=0.002 Sum_probs=52.9
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-CcccceEeeec-CCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw 255 (325)
...|..+.|+|+|. .++... +|.|.+=-+...... ..+.....+.. -...+.++.|..++. + +.+..++.-.+|
T Consensus 447 ~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L-~V~~~~~~~~v~ 522 (591)
T PRK13616 447 PGPISELQLSRDGV-RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-L-VVGRSDPEHPVW 522 (591)
T ss_pred CCCcCeEEECCCCC-EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE-E-EEEecCCCCceE
Confidence 45799999999999 455444 477766322221111 11111222222 233468899998763 4 455555555566
Q ss_pred EccCCCCCCCeeEeeccCCCeeEEEeCCC
Q 020480 256 DLRTPSVSKPVQSVVAHQSEVGVSILNAS 284 (325)
Q Consensus 256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~ 284 (325)
-+.-.........-.....++.+|+=++.
T Consensus 523 ~v~vDG~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 523 YVNLDGSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred EEecCCccccccCCCCccCceEEEecCCc
Confidence 55533221111011112456777777764
No 390
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.35 E-value=25 Score=34.43 Aligned_cols=87 Identities=21% Similarity=0.259 Sum_probs=54.2
Q ss_pred cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCC-C-CCCCCCCCCCCc-EEE--------ecCCCceEEEEecCCC--
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH-P-SKPPLDGACSPD-LRL--------RGHSTEGYGLSWSKFK-- 190 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~-~-~~~~~~~~~~~~-~~~--------~~h~~~v~~l~~~p~~-- 190 (325)
-.-.|..|.++|.| .++|..|..| |.|-.+... . .....++..... +++ ..+...|..+.|+|.+
T Consensus 83 ~~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 83 PLFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 34578999999999 6777777665 444444321 0 000000111111 111 1344678999999985
Q ss_pred CCeEEEEeCCCcEEEEeCCCCC
Q 020480 191 EGHLLSGSDDAQICLWDINAAP 212 (325)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~ 212 (325)
...|+.-..|+++|+||+....
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 2378899999999999997654
No 391
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.05 E-value=14 Score=33.46 Aligned_cols=125 Identities=14% Similarity=0.232 Sum_probs=78.8
Q ss_pred EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
...-.|+|.+++|++++ +.+|+-..+..|.+++...... ......+.+..+..|.+..|..... ++-.+..
T Consensus 62 dm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~------~l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~ 132 (657)
T KOG2377|consen 62 DMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNS------QLEYTQECKTKNANILGFCWTSSTE--IAFITDQ 132 (657)
T ss_pred eecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCch------hhHHHHHhccCcceeEEEEEecCee--EEEEecC
Confidence 34556799999999998 7999999999999999854111 1111223334455689999987643 5555544
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCCcEEEEEccCC
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTP 260 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~ 260 (325)
| +-+|.+.... ..++..+.|+..|+--.|+++..-.+.+.+ ..+++.=+.++++
T Consensus 133 G-~e~y~v~pek-----rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 133 G-IEFYQVLPEK-----RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred C-eEEEEEchhh-----hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 3 6667665433 235556677778888888886533333333 4445555555543
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.98 E-value=6 Score=33.48 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=65.2
Q ss_pred eEEEEecCCCCCeEEEEeCCCc-EEEEeCCCCCCCCccc--ceEeeecCCccEEEEEeecCCCcEEEEEe----cCCcEE
Q 020480 181 GYGLSWSKFKEGHLLSGSDDAQ-ICLWDINAAPKNKSLE--AMQIFKVHEGVVEDVAWHLRHEYLFGSVG----DDQYLL 253 (325)
Q Consensus 181 v~~l~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~s~~----~dg~i~ 253 (325)
.+.+.++|..+.-++.+-.-|+ ..++|.........+. .-+.|.+| -.|||+|..+.||-. .-|.|-
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViG 143 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVIG 143 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCceEE
Confidence 3467788877766777766665 5688888765421110 01223333 468999854444432 347899
Q ss_pred EEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 254 iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 287 (325)
|||.+..-. .+-.+..|.-....+.|.++|+.
T Consensus 144 vYd~r~~fq--rvgE~~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 144 VYDAREGFQ--RVGEFSTHGIGPHEVTLMADGRT 175 (366)
T ss_pred EEecccccc--eecccccCCcCcceeEEecCCcE
Confidence 999996543 56777788878888999999996
No 393
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.91 E-value=32 Score=33.49 Aligned_cols=92 Identities=9% Similarity=0.033 Sum_probs=57.0
Q ss_pred CeEEEEeCCCcEEEEeCCCC--------------CCCCcccceEeeecCCccEEEEEee--cCCCcEEEEEecCCcEEEE
Q 020480 192 GHLLSGSDDAQICLWDINAA--------------PKNKSLEAMQIFKVHEGVVEDVAWH--LRHEYLFGSVGDDQYLLIW 255 (325)
Q Consensus 192 ~~l~s~s~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~s~~~dg~i~iw 255 (325)
..|+.|..||.|.+|-++.- .....+.|...+. -...++.++++ .. .++||+++....|.||
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~-~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKK-SRLIAVSSNSQEVTVF 192 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCc-ceEEEEecCCceEEEE
Confidence 37899999999999965211 0001112333333 34578999998 54 4799999988889888
Q ss_pred EccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480 256 DLRTPSVSKPVQSVVAHQSEVGVSILNASF 285 (325)
Q Consensus 256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~ 285 (325)
-............-..|..-|.+|+|-++.
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~ 222 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDD 222 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCC
Confidence 776532111111112356678999997754
No 394
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.52 E-value=27 Score=32.35 Aligned_cols=29 Identities=14% Similarity=-0.069 Sum_probs=22.1
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEEe
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFD 154 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd 154 (325)
.-.|..+..++.| ..+|-.|.+|.+.++=
T Consensus 103 ~feV~~vl~s~~G-S~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 103 LFEVYQVLLSPTG-SHVALIGIKGLMVMEL 131 (741)
T ss_pred eEEEEEEEecCCC-ceEEEecCCeeEEEEc
Confidence 3467888999999 5777778888776654
No 395
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.23 E-value=4.2 Score=33.30 Aligned_cols=77 Identities=5% Similarity=-0.005 Sum_probs=48.6
Q ss_pred ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe-ee-------cCCccEEEEEeecCCCcEEEEEecCCc
Q 020480 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI-FK-------VHEGVVEDVAWHLRHEYLFGSVGDDQY 251 (325)
Q Consensus 180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~-------~~~~~v~~v~~~p~~~~~l~s~~~dg~ 251 (325)
++..+.. .+. ++++.+.+|.+++||+...+.......+.. +. .....|..+..+.+| .-+++- .+|.
T Consensus 14 ~~~~l~~--~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l-sng~ 88 (219)
T PF07569_consen 14 PVSFLEC--NGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTL-SNGD 88 (219)
T ss_pred ceEEEEe--CCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEE-eCCC
Confidence 3444443 355 799999999999999998754211101111 11 345678888888776 455444 4578
Q ss_pred EEEEEccCCC
Q 020480 252 LLIWDLRTPS 261 (325)
Q Consensus 252 i~iwd~~~~~ 261 (325)
.+.|+..-..
T Consensus 89 ~y~y~~~L~~ 98 (219)
T PF07569_consen 89 SYSYSPDLGC 98 (219)
T ss_pred EEEeccccce
Confidence 8899876654
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.17 E-value=18 Score=32.85 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=58.6
Q ss_pred EEEecCCCCCeEEEEeCCCcEEE---EeCCCCC-CC--CcccceEeeecCC-ccEEEEEeecC----------CCcEEEE
Q 020480 183 GLSWSKFKEGHLLSGSDDAQICL---WDINAAP-KN--KSLEAMQIFKVHE-GVVEDVAWHLR----------HEYLFGS 245 (325)
Q Consensus 183 ~l~~~p~~~~~l~s~s~dg~i~i---wd~~~~~-~~--~~~~~~~~~~~~~-~~v~~v~~~p~----------~~~~l~s 245 (325)
.++.+|++. +++.+..+..+.+ |+..... .. ..+.....+.... ..|+++.|-|- +-..++.
T Consensus 6 ~isls~~~d-~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 6 SISLSPDGD-LLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred eEEecCCCC-EEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 466788887 7777776665554 5442211 10 0011111111111 46777776553 1378999
Q ss_pred EecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480 246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF 285 (325)
Q Consensus 246 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~ 285 (325)
|..+|.|++|...... +..-.-|..+|..|.+....
T Consensus 85 G~ssG~vrfyte~G~L----L~~Q~~h~~pV~~ik~~~~~ 120 (415)
T PF14655_consen 85 GTSSGYVRFYTENGVL----LLSQLLHEEPVLKIKCRSTK 120 (415)
T ss_pred EecccEEEEEeccchH----HHHHhcCccceEEEEecccC
Confidence 9999999999874432 44445588999999886543
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.60 E-value=19 Score=29.69 Aligned_cols=97 Identities=9% Similarity=0.111 Sum_probs=62.4
Q ss_pred EEEEecCCCCCeEEEEeCCCcEEEEe--CCCCCCCCcccceEeeec---CCc-cEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480 182 YGLSWSKFKEGHLLSGSDDAQICLWD--INAAPKNKSLEAMQIFKV---HEG-VVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (325)
Q Consensus 182 ~~l~~~p~~~~~l~s~s~dg~i~iwd--~~~~~~~~~~~~~~~~~~---~~~-~v~~v~~~p~~~~~l~s~~~dg~i~iw 255 (325)
..++|+.+...+.+.-+.+-.|.-|| ..++..... ..+..++. ... .--.++....| ++++++-..++|..+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKV 238 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCc-ceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEE
Confidence 57889887775667777788887787 444432210 01111111 111 11223344455 688888899999999
Q ss_pred EccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480 256 DLRTPSVSKPVQSVVAHQSEVGVSILNA 283 (325)
Q Consensus 256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p 283 (325)
|..+++. +..++-....|+|.+|--
T Consensus 239 dp~tGK~---L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKI---LLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcE---EEEEEcCCCceEEEEecC
Confidence 9999984 777776788899999963
No 398
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.18 E-value=19 Score=29.24 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=62.9
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC---C---cEEEE---eCCC
Q 020480 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---A---QICLW---DINA 210 (325)
Q Consensus 140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d---g---~i~iw---d~~~ 210 (325)
.|..+.....|.+|++.. ....+..++..- +.|..+.++..|. +++|--.+ . .+|+| ....
T Consensus 30 ~Lfva~~g~~Vev~~l~~--------~~~~~~~~F~Tv-~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQ--------EECPLLCTFSTV-GRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred eEEEEcCCCEEEEEEccc--------CCCceeEEEcch-hheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhc
Confidence 444446667899999985 345666777543 7899999999998 78875322 2 56665 2221
Q ss_pred CCCCC----------------ccc-ceEee-ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 211 APKNK----------------SLE-AMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 211 ~~~~~----------------~~~-~~~~~-~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
..... ... .+... -.-+..+.+++..|..+++++ | .++.+.+|-++...
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g-~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-G-CGNKLVLFTLKYQT 166 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-E-cCCEEEEEEEEEEE
Confidence 11000 000 00000 012345677777776555653 3 35678888876543
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.16 E-value=23 Score=30.24 Aligned_cols=125 Identities=13% Similarity=0.183 Sum_probs=74.8
Q ss_pred ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE--ecCCCceEEEEecCCCCCeEEEEeCC
Q 020480 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL--RGHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
+-...|.++.|+|+...++++......|.--+.+. ..++++ .+.. -.-.+.+..++. +.++--.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G-----------dlirtiPL~g~~-DpE~Ieyig~n~-fvi~dER~ 149 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG-----------DLIRTIPLTGFS-DPETIEYIGGNQ-FVIVDERD 149 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCC-----------ceEEEecccccC-ChhHeEEecCCE-EEEEehhc
Confidence 44556999999999866777765555555445443 223333 2322 234667776665 66666678
Q ss_pred CcEEEEeCCCCCCCCccc----ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 201 AQICLWDINAAPKNKSLE----AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~----~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
+.+.++.+.......... ++......+.....++|.|.+. .|..+-.-.-+.||......
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCC
Confidence 888888776653221111 1222222256788899999874 55566666667777766443
No 400
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=84.88 E-value=13 Score=33.47 Aligned_cols=56 Identities=9% Similarity=-0.050 Sum_probs=36.0
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEE-EEeecCCCcEEEEEecCCcEEEEEc
Q 020480 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED-VAWHLRHEYLFGSVGDDQYLLIWDL 257 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~p~~~~~l~s~~~dg~i~iwd~ 257 (325)
.++.++.+|.+...|..+++ .+....-....+.+ .... + ..|+.++.||.|..+++
T Consensus 337 ~l~v~~~~G~l~~ld~~tG~------~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDGR------FVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCCEEEEEECCCCC------EEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEEeC
Confidence 68889999999999998874 23333322222322 1121 3 35778899999888764
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.77 E-value=2.3 Score=42.57 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=66.4
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
..-+.++.|+|.-+...|++..|+.|++..+... ...+..+ ..+...++++|+|.|. .++.|...|++.
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~---------~~~v~s~-p~t~~~Tav~WSprGK-Ql~iG~nnGt~v 223 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL---------AQNVTSF-PVTNSQTAVLWSPRGK-QLFIGRNNGTEV 223 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhh---------hhhhccc-CcccceeeEEeccccc-eeeEecCCCeEE
Confidence 3455678888866566778888999999887651 1111122 3456789999999999 899999999998
Q ss_pred EEeCCCCCCCCcccceEeeecCCccEEEEEeecCC
Q 020480 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH 239 (325)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 239 (325)
-|......+. .+.+. .... ...|.+|+|-...
T Consensus 224 Qy~P~leik~-~ip~P-p~~e-~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 224 QYEPSLEIKS-EIPEP-PVEE-NYRVLSVTWLSTQ 255 (1405)
T ss_pred Eeecccceee-cccCC-CcCC-CcceeEEEEecce
Confidence 8876533110 01111 1111 4679999998653
No 402
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.73 E-value=4.2 Score=22.83 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=26.1
Q ss_pred cCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480 237 LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL 281 (325)
Q Consensus 237 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~ 281 (325)
|++..++++.-.+++|.++|..+... +..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~---~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKV---IATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeE---EEEEEC-CCCCceEEe
Confidence 45656777777899999999977663 455443 233344444
No 403
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.70 E-value=5 Score=22.26 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=20.9
Q ss_pred CCccEEEEEeecCCCcEEEEEecC--CcEEEE
Q 020480 226 HEGVVEDVAWHLRHEYLFGSVGDD--QYLLIW 255 (325)
Q Consensus 226 ~~~~v~~v~~~p~~~~~l~s~~~d--g~i~iw 255 (325)
....-....|+|+|..++.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999997777677776 766665
No 404
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=84.27 E-value=27 Score=30.34 Aligned_cols=128 Identities=9% Similarity=0.009 Sum_probs=72.0
Q ss_pred eEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEE
Q 020480 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (325)
Q Consensus 116 ~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 195 (325)
+...........+.++.... +++++|..-..|.++.+.... .....+ .-......++++.+-+++. .++
T Consensus 120 l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~------~~l~~v-a~d~~~~~v~~~~~l~d~~-~~i 188 (321)
T PF03178_consen 120 LLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEEN------NKLILV-ARDYQPRWVTAAEFLVDED-TII 188 (321)
T ss_dssp EEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTT------E-EEEE-EEESS-BEEEEEEEE-SSS-EEE
T ss_pred chhhheecceEEEEEEeccc---cEEEEEEcccCEEEEEEEccC------CEEEEE-EecCCCccEEEEEEecCCc-EEE
Confidence 55555555555777777664 588898888888888655410 111111 1123355688999987775 899
Q ss_pred EEeCCCcEEEEeCCCCCC----CC-cccceEeeecCCccEEEE---EeecC--CC-----cEEEEEecCCcEEEE
Q 020480 196 SGSDDAQICLWDINAAPK----NK-SLEAMQIFKVHEGVVEDV---AWHLR--HE-----YLFGSVGDDQYLLIW 255 (325)
Q Consensus 196 s~s~dg~i~iwd~~~~~~----~~-~~~~~~~~~~~~~~v~~v---~~~p~--~~-----~~l~s~~~dg~i~iw 255 (325)
.+..+|.+.++....... .. .+.....+. ....|+++ ++.|. +. ..++-++.+|.|.+.
T Consensus 189 ~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 189 VGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999999999998763211 11 222333333 33557776 55552 22 247788889988844
No 405
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=84.16 E-value=11 Score=35.82 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=55.7
Q ss_pred cEEEEEecCCe-----EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC------cEEEEe
Q 020480 139 FLIATKTVSAE-----VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA------QICLWD 207 (325)
Q Consensus 139 ~~la~g~~dg~-----v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg------~i~iwd 207 (325)
.+.|+||.||. |..||..+ ..+..+..+.......-...+ ++. +.+.|+.++ ++..||
T Consensus 382 ~iYavGG~dg~~~l~svE~YDp~~--------~~W~~va~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l~sve~YD 450 (571)
T KOG4441|consen 382 KLYAVGGFDGEKSLNSVECYDPVT--------NKWTPVAPMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCLNSVECYD 450 (571)
T ss_pred EEEEEeccccccccccEEEecCCC--------CcccccCCCCcceeeeEEEEE--CCE-EEEEcCcCCCccccceEEEEc
Confidence 68899998874 66677766 444444333221111112222 234 777777554 467788
Q ss_pred CCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc-----EEEEEccCCC
Q 020480 208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-----LLIWDLRTPS 261 (325)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~-----i~iwd~~~~~ 261 (325)
..+..-. .+..+..-..... ++.- + ..+++.||.|+. |..||.++.+
T Consensus 451 P~t~~W~----~~~~M~~~R~~~g-~a~~-~-~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 451 PETNTWT----LIAPMNTRRSGFG-VAVL-N-GKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred CCCCcee----ecCCcccccccce-EEEE-C-CEEEEECCccCCCccceEEEEcCCCCc
Confidence 7765321 1111111111111 2222 2 368888888773 7778888766
No 406
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.73 E-value=5.6 Score=22.05 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=21.3
Q ss_pred CCCceEEEEecCCCCCeEEEEeCC--CcEEEE
Q 020480 177 HSTEGYGLSWSKFKEGHLLSGSDD--AQICLW 206 (325)
Q Consensus 177 h~~~v~~l~~~p~~~~~l~s~s~d--g~i~iw 206 (325)
....-....|+|+|..++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 444567889999999777777777 666665
No 407
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=83.66 E-value=31 Score=30.53 Aligned_cols=148 Identities=10% Similarity=0.064 Sum_probs=77.4
Q ss_pred CCCeeEEEecCCCCcEEEEE-ecCC---eEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCceEEEEec-CCCCCeEEEE
Q 020480 125 DGEVNRARYMPQNPFLIATK-TVSA---EVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWS-KFKEGHLLSG 197 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g-~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~-p~~~~~l~s~ 197 (325)
...+..+.|.+++..+++.- ..+. .+.++|... +....+..-. +.-..-....|. +++..++...
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t--------g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s 254 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST--------GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWIS 254 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT--------TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC--------CceeEEEEecCCcceeeecccccccCCCCEEEEEE
Confidence 45677888888873233332 2222 455566654 2222222111 111122345554 7777677777
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEE-EEeecCCCcEEEEEecC--CcEEEEEccCC-CCCCCeeEeeccC
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED-VAWHLRHEYLFGSVGDD--QYLLIWDLRTP-SVSKPVQSVVAHQ 273 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~p~~~~~l~s~~~d--g~i~iwd~~~~-~~~~~~~~~~~h~ 273 (325)
..+|.-+||-+..... ....+....-.|.. +.|++.+..++.++..+ +.-+||-+... .. .+..+....
T Consensus 255 ~~~G~~hly~~~~~~~-----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~~ 327 (353)
T PF00930_consen 255 ERDGYRHLYLYDLDGG-----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLTCED 327 (353)
T ss_dssp ETTSSEEEEEEETTSS-----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESSTTS
T ss_pred EcCCCcEEEEEccccc-----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEeccCCC
Confidence 7888877665554322 23345555556744 67888876676677753 34555555433 21 244443222
Q ss_pred CCeeEEEeCCCCCc
Q 020480 274 SEVGVSILNASFRL 287 (325)
Q Consensus 274 ~~v~~i~~~p~~~~ 287 (325)
..-..+.|+|+|++
T Consensus 328 ~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 328 GDHYSASFSPDGKY 341 (353)
T ss_dssp STTEEEEE-TTSSE
T ss_pred CCceEEEECCCCCE
Confidence 22258999999985
No 408
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.30 E-value=17 Score=28.36 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=27.0
Q ss_pred CCeeEEEecCCC-----CcEEEEEecCCeEEEEeCCC
Q 020480 126 GEVNRARYMPQN-----PFLIATKTVSAEVYVFDYSK 157 (325)
Q Consensus 126 ~~v~~v~~~~~~-----~~~la~g~~dg~v~vwd~~~ 157 (325)
..|.+++|||.| ..+||+.+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 488999999954 45899999999999998765
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.29 E-value=9 Score=34.61 Aligned_cols=106 Identities=11% Similarity=0.069 Sum_probs=52.7
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-C-CceEEEEe--cCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceE-
Q 020480 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-S-TEGYGLSW--SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ- 221 (325)
Q Consensus 147 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~-~~v~~l~~--~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~- 221 (325)
..++++||+.. .++++++.-- . ....-+.| .|....-++.+....+|..|--.... .+....+-
T Consensus 221 G~~l~vWD~~~----------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g-~W~a~kVi~ 289 (461)
T PF05694_consen 221 GHSLHVWDWST----------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG-EWAAEKVID 289 (461)
T ss_dssp --EEEEEETTT----------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT-EEEEEEEEE
T ss_pred cCeEEEEECCC----------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC-CeeeeEEEE
Confidence 45899999987 4445555422 2 23445555 55555446666666666666442211 11111111
Q ss_pred ----------------eeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC
Q 020480 222 ----------------IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS 263 (325)
Q Consensus 222 ----------------~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 263 (325)
.+.+-..-|+++..|.++..+.+++=..|.||.||+......
T Consensus 290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 290 IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 111223568899999998666677779999999999987653
No 410
>PHA02713 hypothetical protein; Provisional
Probab=83.01 E-value=28 Score=33.04 Aligned_cols=62 Identities=6% Similarity=-0.027 Sum_probs=35.5
Q ss_pred eEEEEeCC------CcEEEEeCCC-CCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC--cEEEEEccCCC
Q 020480 193 HLLSGSDD------AQICLWDINA-APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPS 261 (325)
Q Consensus 193 ~l~s~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg--~i~iwd~~~~~ 261 (325)
+.+.|+.+ ..+..||..+ ..- ..+..+.........+.. + ..+.+.||.+| ++..||..+.+
T Consensus 466 IYv~GG~~~~~~~~~~ve~Ydp~~~~~W----~~~~~m~~~r~~~~~~~~--~-~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 466 IYVVCDIKDEKNVKTCIFRYNTNTYNGW----ELITTTESRLSALHTILH--D-NTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEEEeCCCCCCccceeEEEecCCCCCCe----eEccccCcccccceeEEE--C-CEEEEEeeecceeehhhcCccccc
Confidence 56666654 2467788886 322 112222222222323333 3 37889999888 77888888776
No 411
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.49 E-value=0.3 Score=43.96 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=75.6
Q ss_pred eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCC
Q 020480 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDD 200 (325)
Q Consensus 122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~d 200 (325)
..-++....++|..+++..++.+-..+.+.+|++... . ...+. +-+..-.-+.|++... .++.+...
T Consensus 71 ~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e--------y---tqqLE~gg~~s~sll~wsKg~~-el~ig~~~ 138 (615)
T KOG2247|consen 71 LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE--------Y---TQQLESGGTSSKSLLAWSKGTP-ELVIGNNA 138 (615)
T ss_pred cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh--------h---HHHHhccCcchHHHHhhccCCc-cccccccc
Confidence 3456677788898888777777788899999999861 1 11111 1111222378999888 68888899
Q ss_pred CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcE
Q 020480 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252 (325)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i 252 (325)
|.+.|++....+. +-....|...+.+++|.+.+ +.+.++.|..+
T Consensus 139 gn~viynhgtsR~------iiv~Gkh~RRgtq~av~lEd--~vil~dcd~~L 182 (615)
T KOG2247|consen 139 GNIVIYNHGTSRR------IIVMGKHQRRGTQIAVTLED--YVILCDCDNTL 182 (615)
T ss_pred cceEEEeccchhh------hhhhcccccceeEEEecccc--eeeecCcHHHH
Confidence 9999999887643 22223388889999999865 45566655443
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.81 E-value=26 Score=29.90 Aligned_cols=128 Identities=14% Similarity=0.177 Sum_probs=75.7
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (325)
Q Consensus 128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd 207 (325)
-..+.+...| .+.++--.++.+.++.+.........+....++......+...-.++|.|... .|+.+-.-.-+.||.
T Consensus 131 pE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~ 208 (316)
T COG3204 131 PETIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFE 208 (316)
T ss_pred hhHeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEE
Confidence 3445666655 45555556788888887653221110010111111112245678999999988 677788888888888
Q ss_pred CCCCCCCCcccceEeeecC-------CccEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480 208 INAAPKNKSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (325)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-------~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~ 260 (325)
+......-. .+....+ -..|.++.|++...++++-+..++.+.-.|....
T Consensus 209 ~~~~~~~l~---~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 209 VTQSPSSLS---VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred EecCCcccc---cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 775432211 1111111 1346778888866678888888888888877654
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.79 E-value=14 Score=30.32 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=43.7
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-----ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCC
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-----RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA 211 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~ 211 (325)
+++++-+.+|.+++||+........+ ....|+... ......|..+....+|. -+++-+ +|..+.|+...+
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEeccccc
Confidence 57888899999999999873222110 001111100 03456788888887776 555554 578899987754
No 414
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=80.68 E-value=37 Score=32.37 Aligned_cols=118 Identities=10% Similarity=-0.024 Sum_probs=62.3
Q ss_pred cCCCeeEEEecCCCCcEEEEEecC-C-----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 124 HDGEVNRARYMPQNPFLIATKTVS-A-----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 124 h~~~v~~v~~~~~~~~~la~g~~d-g-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
....-.+++... + .++++||.+ | ++..||... ..+..+..+............ +|. +.+.|
T Consensus 321 ~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~--------~~W~~~a~M~~~R~~~~v~~l--~g~-iYavG 387 (571)
T KOG4441|consen 321 SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRT--------NQWTPVAPMNTKRSDFGVAVL--DGK-LYAVG 387 (571)
T ss_pred cccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCC--------CceeccCCccCccccceeEEE--CCE-EEEEe
Confidence 444444555554 3 689999998 3 577788776 444443333322211111111 244 78888
Q ss_pred eCCCc-----EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC------cEEEEEccCCC
Q 020480 198 SDDAQ-----ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ------YLLIWDLRTPS 261 (325)
Q Consensus 198 s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg------~i~iwd~~~~~ 261 (325)
+.||. +-.||..+.+-. .+..........-.+.+ +..+.+.||.++ ++..||..+..
T Consensus 388 G~dg~~~l~svE~YDp~~~~W~----~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 388 GFDGEKSLNSVECYDPVTNKWT----PVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred ccccccccccEEEecCCCCccc----ccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 88864 677887765321 11111111112222222 236788888554 46788887765
No 415
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.05 E-value=26 Score=31.65 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=56.5
Q ss_pred eEEEEecCCCCCeEEEEeCCCc----EEEEeCCCCCCCCcccceE-eeecCCccEEEEEeecCCCcEEEEEecCC-----
Q 020480 181 GYGLSWSKFKEGHLLSGSDDAQ----ICLWDINAAPKNKSLEAMQ-IFKVHEGVVEDVAWHLRHEYLFGSVGDDQ----- 250 (325)
Q Consensus 181 v~~l~~~p~~~~~l~s~s~dg~----i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~s~~~dg----- 250 (325)
+....++|++..++++.+..|. ++++|+.++.. +. .+... ....+.|.+++..++.+...+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~------l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF------LPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE------EEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC------cCCccccc--ccceEEEeCCCCEEEEEEeCccccccc
Confidence 4467889999955555555554 99999998732 22 22211 1223999999766666654432
Q ss_pred -----cEEEEEccCCCCCCCeeEeeccCCC--eeEEEeCCCCCc
Q 020480 251 -----YLLIWDLRTPSVSKPVQSVVAHQSE--VGVSILNASFRL 287 (325)
Q Consensus 251 -----~i~iwd~~~~~~~~~~~~~~~h~~~--v~~i~~~p~~~~ 287 (325)
.|+.|.+.+.... ....+...... ...+..++++++
T Consensus 198 ~~~~~~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~~~ 240 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDGRY 240 (414)
T ss_dssp CGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSE
T ss_pred CCCCcEEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcccE
Confidence 2667777665421 12333332222 567888999984
No 416
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.55 E-value=6.9 Score=35.89 Aligned_cols=60 Identities=13% Similarity=0.069 Sum_probs=45.0
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCC
Q 020480 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA 210 (325)
Q Consensus 139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~ 210 (325)
.++|+|+..|.|++||.-. ......+++...+|..+....+|..+|+||- ..+.+-|++.
T Consensus 574 GyIa~as~kGDirLyDRig----------~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i 633 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIG----------KRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI 633 (776)
T ss_pred ceEEEecCCCceeeehhhc----------chhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence 3899999999999999765 2223346777889999999999985555553 5777777654
No 417
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=79.53 E-value=44 Score=29.56 Aligned_cols=104 Identities=10% Similarity=0.188 Sum_probs=56.7
Q ss_pred EEEec-CCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEE-EEecCCCCCeEEEEeCCC--cEEE
Q 020480 130 RARYM-PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG-LSWSKFKEGHLLSGSDDA--QICL 205 (325)
Q Consensus 130 ~v~~~-~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~dg--~i~i 205 (325)
...|. +++..++.....+|--+||-+... ......+....-.|.. +.|++.+..++++|..++ .-.|
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~---------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~l 309 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLD---------GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHL 309 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETT---------SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEE
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccc---------ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEE
Confidence 45554 666567666668886555544431 1113344444555644 678888876677777643 3444
Q ss_pred E--eCC-CCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC
Q 020480 206 W--DIN-AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (325)
Q Consensus 206 w--d~~-~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d 249 (325)
| ++. .+ .+..+......-..+.|+|++..++.+++.-
T Consensus 310 Y~v~~~~~~-------~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 310 YRVSLDSGG-------EPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp EEEETTETT-------EEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred EEEEeCCCC-------CeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 4 444 22 2333333333226899999987676676654
No 418
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=79.16 E-value=42 Score=30.01 Aligned_cols=131 Identities=11% Similarity=0.152 Sum_probs=60.1
Q ss_pred EecCCCCcEEEEEecCCe--EEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceEEEEecCCCCCeEEEEeCCCcEEEEeC
Q 020480 132 RYMPQNPFLIATKTVSAE--VYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208 (325)
Q Consensus 132 ~~~~~~~~~la~g~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~ 208 (325)
+|.++|.++|.++..+|. +.+.|+.+ ..+..|.... .......++|..+ .++-......|+-.|+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t-----------~~i~QLTdg~g~~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL 109 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLAT-----------GEITQLTDGPGDNTFGGFLSPDDR-ALYYVKNGRSLRRVDL 109 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT------------EEEE---SS-B-TTT-EE-TTSS-EEEEEETTTEEEEEET
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEccc-----------CEEEECccCCCCCccceEEecCCC-eEEEEECCCeEEEEEC
Confidence 577788777777766765 55556655 2233343332 2223466678776 5555555568888898
Q ss_pred CCCCCCCcccceEeeecCCccEEEEEeecC-CCcEEEEEe---c-------------------CCcEEEEEccCCCCCCC
Q 020480 209 NAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVG---D-------------------DQYLLIWDLRTPSVSKP 265 (325)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~s~~---~-------------------dg~i~iwd~~~~~~~~~ 265 (325)
++.+. ...+......+-...|..+ +...++-.- . ...|.--|+++++
T Consensus 110 ~T~e~------~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~---- 179 (386)
T PF14583_consen 110 DTLEE------RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE---- 179 (386)
T ss_dssp TT--E------EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------
T ss_pred CcCcE------EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc----
Confidence 87642 2233333444444555432 223332211 1 1224445666655
Q ss_pred eeEeeccCCCeeEEEeCCC
Q 020480 266 VQSVVAHQSEVGVSILNAS 284 (325)
Q Consensus 266 ~~~~~~h~~~v~~i~~~p~ 284 (325)
...+..-...+..+.|+|.
T Consensus 180 ~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 180 RKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp EEEEEEESS-EEEEEEETT
T ss_pred eeEEEecCccccCcccCCC
Confidence 4444445566777777774
No 419
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.55 E-value=11 Score=35.70 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=39.2
Q ss_pred eEEEEeCCCcEEEEeCCCCC---CCCc---------ccceEee--------ecCCccEEEEEeec---CCCcEEEEEecC
Q 020480 193 HLLSGSDDAQICLWDINAAP---KNKS---------LEAMQIF--------KVHEGVVEDVAWHL---RHEYLFGSVGDD 249 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~---~~~~---------~~~~~~~--------~~~~~~v~~v~~~p---~~~~~l~s~~~d 249 (325)
.++.+..||.+......... .... ...+..+ ......+..++.++ .+..++++-+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 78888899998888776521 1000 0000000 01123445555555 235789999999
Q ss_pred CcEEEEEccCCCC
Q 020480 250 QYLLIWDLRTPSV 262 (325)
Q Consensus 250 g~i~iwd~~~~~~ 262 (325)
+.+|+||+.++.+
T Consensus 240 ~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 240 HTLRIWSLETGQC 252 (547)
T ss_dssp SEEEEEETTTTCE
T ss_pred CeEEEEECCCCeE
Confidence 9999999999885
No 420
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=76.65 E-value=16 Score=31.93 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=36.4
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEE-EecCCcEEEEEccCCCCCCCeeEee
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS-VGDDQYLLIWDLRTPSVSKPVQSVV 270 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~ 270 (325)
.|.++|+.+.+ .+..+.- ...+.+|+.+.+..-+|.+ ...++.|.+||..+++. +.++.
T Consensus 270 eVWv~D~~t~k------rv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~---~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHK------RVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL---VRSIE 329 (342)
T ss_dssp EEEEEETTTTE------EEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E---EEEE-
T ss_pred EEEEEECCCCe------EEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE---Eeehh
Confidence 36666777663 3444432 2357788888876556644 45689999999999984 66654
No 421
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=76.05 E-value=79 Score=31.48 Aligned_cols=123 Identities=13% Similarity=0.081 Sum_probs=70.4
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC----------CceEEEEecCCCCCeE
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS----------TEGYGLSWSKFKEGHL 194 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~----------~~v~~l~~~p~~~~~l 194 (325)
..+...++|+|.....||+-...|...||++....... .........+. +.-..+.|.++.. .|
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~l 218 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRK-----SSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RL 218 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccC-----CcceeeccCCCccccCCCcccCcceeeEecCCCC-EE
Confidence 35788999999887899999999999999993211100 01111111111 2334788988777 56
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
+.++. ..+.++|++....... +. .......|.++.-+|.++..+..-. ...|...++..
T Consensus 219 Lv~~r-~~l~~~d~~~~~~~~~---l~-~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 219 LVCNR-SKLMLIDFESNWQTEY---LV-TAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred EEEcC-CceEEEECCCCCccch---hc-cCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 66664 5688899987643110 11 1223456777777765322222111 23455555555
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=75.70 E-value=47 Score=27.85 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=61.7
Q ss_pred CCeeEEEecCCCCcEEEEEecCCeEEEEe-CCCCCCCCCCCCCCCCcEE-EecCCCceEEEEecCCCCCeEEEEe---CC
Q 020480 126 GEVNRARYMPQNPFLIATKTVSAEVYVFD-YSKHPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGS---DD 200 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd-~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s---~d 200 (325)
..+..-.|.+++ .+.+....+...+++. ... +...++.. ...-...|+.+.++|+|.. ++... .+
T Consensus 66 ~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~--------g~~~~~~v~~~~~~~~I~~l~vSpDG~R-vA~v~~~~~~ 135 (253)
T PF10647_consen 66 GSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSAS--------GTGEPVEVDWPGLRGRITALRVSPDGTR-VAVVVEDGGG 135 (253)
T ss_pred CccccccccCCC-CEEEEEcCCCceEEEEecCC--------CcceeEEecccccCCceEEEEECCCCcE-EEEEEecCCC
Confidence 366677889987 5666666666666664 222 11121111 1111128999999999994 44443 34
Q ss_pred CcEEEEeCCCCCCC--Ccc-cceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480 201 AQICLWDINAAPKN--KSL-EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (325)
Q Consensus 201 g~i~iwd~~~~~~~--~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~ 248 (325)
+.|.+=-+...... ..+ .+..........+.+++|.+++ .+++.+..
T Consensus 136 ~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~ 185 (253)
T PF10647_consen 136 GRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRS 185 (253)
T ss_pred CeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEEeCC
Confidence 66776655433222 111 1222222335678999999986 45544443
No 423
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.70 E-value=54 Score=28.06 Aligned_cols=94 Identities=14% Similarity=0.224 Sum_probs=55.1
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe------CCCcEEEEeCCCCCCCCcccce
Q 020480 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS------DDAQICLWDINAAPKNKSLEAM 220 (325)
Q Consensus 147 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~ 220 (325)
-..|++||... .++... -.+-.+.|+++.|..+.. +++.|. ....+..||..... .
T Consensus 15 C~~lC~yd~~~--------~qW~~~--g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~-------w 76 (281)
T PF12768_consen 15 CPGLCLYDTDN--------SQWSSP--GNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQT-------W 76 (281)
T ss_pred CCEEEEEECCC--------CEeecC--CCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCe-------e
Confidence 35799999876 333222 123457899999985554 777764 45678899988652 2
Q ss_pred Eeeec-----CCccEEEEEeec-CCCcEEEEEe-cCCc--EEEEEcc
Q 020480 221 QIFKV-----HEGVVEDVAWHL-RHEYLFGSVG-DDQY--LLIWDLR 258 (325)
Q Consensus 221 ~~~~~-----~~~~v~~v~~~p-~~~~~l~s~~-~dg~--i~iwd~~ 258 (325)
..+.. -.++|..+.+.. +..++.++|. .+|. |..||-.
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 22222 236677777643 3334555554 3444 5555433
No 424
>PRK10115 protease 2; Provisional
Probab=74.67 E-value=90 Score=30.64 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=59.3
Q ss_pred CeeEEEecCCCCcEEEEEe-cC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC-
Q 020480 127 EVNRARYMPQNPFLIATKT-VS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD- 200 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~-~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d- 200 (325)
.+..+.++|++ ++||.+. .+ ..|++.|+.+ +...+ ..+.+ .. ..++|.+++..++++...+
T Consensus 128 ~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~t--------g~~l~-~~i~~-~~--~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLET--------GNWYP-ELLDN-VE--PSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCC--------CCCCC-ccccC-cc--eEEEEeeCCCEEEEEEecCC
Confidence 46678899998 4666542 22 3688888875 22101 11111 11 4699999988666665432
Q ss_pred ----CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeec-CCCcEEEEEe--cCCcEEEEEc
Q 020480 201 ----AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL-RHEYLFGSVG--DDQYLLIWDL 257 (325)
Q Consensus 201 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~~--~dg~i~iwd~ 257 (325)
..|+.+++.++... ....+........-..+.+ ++..+++... .++.+.+++.
T Consensus 195 ~~~~~~v~~h~lgt~~~~----d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 195 TLLPYQVWRHTIGTPASQ----DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCCCEEEEEECCCChhH----CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 35777777766321 1122332222233223333 5544443333 3356778884
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=71.77 E-value=66 Score=27.84 Aligned_cols=114 Identities=8% Similarity=-0.011 Sum_probs=54.6
Q ss_pred ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEE
Q 020480 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254 (325)
Q Consensus 175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~i 254 (325)
..-.+.+..+.-++++. ++++++.-....-||--... -..........|.++.|.|++ .+.+ ....|.|++
T Consensus 141 ~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~------w~~~~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~ 211 (302)
T PF14870_consen 141 SETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTT------WQPHNRNSSRRIQSMGFSPDG-NLWM-LARGGQIQF 211 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-------EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEE
T ss_pred cCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCcc------ceEEccCccceehhceecCCC-CEEE-EeCCcEEEE
Confidence 34456788888899988 67776665556677754321 111122345789999999986 4554 448888888
Q ss_pred EEccC-CCCC-CCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEe
Q 020480 255 WDLRT-PSVS-KPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTH 297 (325)
Q Consensus 255 wd~~~-~~~~-~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~ 297 (325)
=+... .... +++..+..-.-.+..++|.+++.+ .++..+++..
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 76211 1100 011111112224788999988775 4444444433
No 426
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=71.65 E-value=1.2e+02 Score=30.70 Aligned_cols=139 Identities=8% Similarity=0.035 Sum_probs=82.5
Q ss_pred eeEEEecCCCCcEEEEEe----------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480 128 VNRARYMPQNPFLIATKT----------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (325)
Q Consensus 128 v~~v~~~~~~~~~la~g~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 197 (325)
|.++.|..+...++++|+ ..|.|.+|.+.+ . ++.+.+.... -.+.+.++.-. +. .++ +
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~------~~L~~v~e~~-v~Gav~aL~~f--ng-kll-A 844 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-L------NSLELVAETV-VKGAVYALVEF--NG-KLL-A 844 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-C------Cceeeeeeee-eccceeehhhh--CC-eEE-E
Confidence 444557777447888875 346777776654 0 1112121111 23455555432 22 333 3
Q ss_pred eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--eccCCC
Q 020480 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSE 275 (325)
Q Consensus 198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~ 275 (325)
+-...|++|+....+ .++.-..+...+..+...-.+ ..++.|.--+++.+-..+..+- .+..+ .-+..+
T Consensus 845 ~In~~vrLye~t~~~------eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~~~eg--~f~evArD~~p~W 915 (1096)
T KOG1897|consen 845 GINQSVRLYEWTTER------ELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYKGDEG--NFEEVARDYNPNW 915 (1096)
T ss_pred ecCcEEEEEEccccc------eehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEEEeccCC--ceEEeehhhCccc
Confidence 456789999988762 244445667778888888776 6888999999988887776552 12222 335566
Q ss_pred eeEEEeCCCCCc
Q 020480 276 VGVSILNASFRL 287 (325)
Q Consensus 276 v~~i~~~p~~~~ 287 (325)
++++.+-.+..+
T Consensus 916 mtaveil~~d~y 927 (1096)
T KOG1897|consen 916 MTAVEILDDDTY 927 (1096)
T ss_pred eeeEEEecCceE
Confidence 777666555443
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=71.58 E-value=37 Score=29.81 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=54.1
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC-CCcEEE----ecCCCceEEEEecCC---CCCeEEEEeC
Q 020480 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGAC-SPDLRL----RGHSTEGYGLSWSKF---KEGHLLSGSD 199 (325)
Q Consensus 128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~----~~h~~~v~~l~~~p~---~~~~l~s~s~ 199 (325)
-..|+|.|++ .++++ ...|.|++++... .. ..+..+ .........++++|+ ...+.++-+.
T Consensus 4 P~~~a~~pdG-~l~v~-e~~G~i~~~~~~g---------~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 4 PRSMAFLPDG-RLLVA-ERSGRIWVVDKDG---------SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp EEEEEEETTS-CEEEE-ETTTEEEEEETTT---------EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred ceEEEEeCCC-cEEEE-eCCceEEEEeCCC---------cCcceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence 4689999997 56665 6699999999332 11 111111 233456799999994 2213333332
Q ss_pred C--------CcEEEEeCCCCCCC-Ccc-cceEeeec---CCccEEEEEeecCCCcEEEEEecC
Q 020480 200 D--------AQICLWDINAAPKN-KSL-EAMQIFKV---HEGVVEDVAWHLRHEYLFGSVGDD 249 (325)
Q Consensus 200 d--------g~i~iwd~~~~~~~-~~~-~~~~~~~~---~~~~v~~v~~~p~~~~~l~s~~~d 249 (325)
. ..|.-|........ ... ..+..... .......+.|.|++ .++++.+..
T Consensus 73 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~ 134 (331)
T PF07995_consen 73 ADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDG 134 (331)
T ss_dssp E-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-T
T ss_pred ccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCC
Confidence 1 23444444333110 000 01111121 22345669999998 566565543
No 428
>PHA03098 kelch-like protein; Provisional
Probab=71.54 E-value=84 Score=29.58 Aligned_cols=105 Identities=7% Similarity=-0.083 Sum_probs=48.7
Q ss_pred cEEEEEecCC-----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC------CcEEEEe
Q 020480 139 FLIATKTVSA-----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD------AQICLWD 207 (325)
Q Consensus 139 ~~la~g~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d------g~i~iwd 207 (325)
.+++.||.++ .+..||..+ ..+.....+...... .+++. -++. +++.|+.+ ..+..||
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~--------~~W~~~~~lp~~r~~-~~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGE--------SKWREEPPLIFPRYN-PCVVN-VNNL-IYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCC--------CceeeCCCcCcCCcc-ceEEE-ECCE-EEEECCcCCCCcccceEEEEe
Confidence 6788887652 466777765 223222222111111 11221 1334 66666632 4578888
Q ss_pred CCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC--------cEEEEEccCCC
Q 020480 208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--------YLLIWDLRTPS 261 (325)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg--------~i~iwd~~~~~ 261 (325)
+.+..-. .+..+.........+. . ++ .+++.||.++ .+.+||..+.+
T Consensus 413 ~~t~~W~----~~~~~p~~r~~~~~~~-~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 413 LNTNKWS----KGSPLPISHYGGCAIY-H-DG-KIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCCCeee----ecCCCCccccCceEEE-E-CC-EEEEECCccCCCCCcccceEEEecCCCCc
Confidence 8764321 1111111111111222 2 33 5667776432 38889988765
No 429
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=71.29 E-value=12 Score=19.18 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=19.4
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEe
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFD 154 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd 154 (325)
.|.+++..+ .++++++..+.+++|.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 466677655 5899999999999884
No 430
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.27 E-value=40 Score=25.13 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=69.8
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC----CCCeEEEEeCCCcEEE
Q 020480 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----KEGHLLSGSDDAQICL 205 (325)
Q Consensus 130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~dg~i~i 205 (325)
.-+|....+ .|++++.-|+|.|++......... .....+..+ .-...|++|+-.+- +...|+.|+ ...+..
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~--~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~lla 77 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTG--RQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLA 77 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCccccccc--cccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEE
Confidence 345666664 788888999999999875322110 012233333 34567788765442 344666666 567899
Q ss_pred EeCCCCCCCCcccceEeeecCCccEEEEEeecCC--CcEEEEEecCCcEEEEEccCCC
Q 020480 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH--EYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
||+...... -++.-...|+++.+-.-+ +.-++..+...+|.-||....+
T Consensus 78 YDV~~N~d~-------Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 78 YDVENNSDL-------FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred EEcccCchh-------hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 999876431 123334567777663211 1234455556777777766544
No 431
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=70.32 E-value=1.3e+02 Score=30.50 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=81.1
Q ss_pred CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (325)
Q Consensus 114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 193 (325)
.+++.+....-.+.|.++..-. | +++|. -...|++|++.. .+.++.-..|..++..+...-.+. .
T Consensus 818 ~~L~~v~e~~v~Gav~aL~~fn-g-kllA~--In~~vrLye~t~----------~~eLr~e~~~~~~~~aL~l~v~gd-e 882 (1096)
T KOG1897|consen 818 NSLELVAETVVKGAVYALVEFN-G-KLLAG--INQSVRLYEWTT----------ERELRIECNISNPIIALDLQVKGD-E 882 (1096)
T ss_pred CceeeeeeeeeccceeehhhhC-C-eEEEe--cCcEEEEEEccc----------cceehhhhcccCCeEEEEEEecCc-E
Confidence 5677777777788888877654 3 45554 456899999987 223444456777888888888787 8
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (325)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~ 258 (325)
++.|..=+++.+--.+..+... ....-..+...++++.+--+. .++-+..+|.+.+-...
T Consensus 883 I~VgDlm~Sitll~y~~~eg~f---~evArD~~p~Wmtaveil~~d--~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 883 IAVGDLMRSITLLQYKGDEGNF---EEVARDYNPNWMTAVEILDDD--TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEEeeccceEEEEEEeccCCce---EEeehhhCccceeeEEEecCc--eEEeecccccEEEEEec
Confidence 9999988888877666543210 011123356677777765432 44455666766665444
No 432
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=70.31 E-value=16 Score=20.25 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=17.2
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCC
Q 020480 188 KFKEGHLLSGSDDAQICLWDINAA 211 (325)
Q Consensus 188 p~~~~~l~s~s~dg~i~iwd~~~~ 211 (325)
|++..++++...+++|.++|..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 455645666667899999998765
No 433
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=69.89 E-value=87 Score=28.54 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=63.7
Q ss_pred cCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEee---cCCCcEEEEEecCCcEEEEEccCCCCC
Q 020480 187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH---LRHEYLFGSVGDDQYLLIWDLRTPSVS 263 (325)
Q Consensus 187 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~---p~~~~~l~s~~~dg~i~iwd~~~~~~~ 263 (325)
++++...++.||..|.++||+......... ..+-. ..-+.+|..+..- +......++.-.-..+.||.+......
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-cEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 344556899999999999999865432111 11111 2234567666543 222233444567788888888533211
Q ss_pred ------CCeeEeeccC--CCeeEEEeCCCCCc-------cCCCCceEEeeecceee
Q 020480 264 ------KPVQSVVAHQ--SEVGVSILNASFRL-------SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 264 ------~~~~~~~~h~--~~v~~i~~~p~~~~-------~~~~d~~~~~~~~~~~~ 304 (325)
..+..+..|. .....++.-|-|.. .-+.||+..+++...+.
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence 1122223332 23344455454443 46778888887665544
No 434
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=69.51 E-value=90 Score=28.46 Aligned_cols=119 Identities=10% Similarity=0.031 Sum_probs=65.7
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecC---CCCCeEEEEeCCCcEEEEeCCCC
Q 020480 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK---FKEGHLLSGSDDAQICLWDINAA 211 (325)
Q Consensus 135 ~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~~l~s~s~dg~i~iwd~~~~ 211 (325)
+++...|++|+..|.++||+...... ....+.--..-..+|..+..-+ ......++.=.-..+.||.+...
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~------~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~ 107 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEF------QPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLV 107 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCC------CCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEec
Confidence 34557899999999999999855111 1111211123456787776532 22223333355677888877433
Q ss_pred CCC----CcccceEeeecCC--ccEEEEEeecC----CCcEEEEEecCCcEEEEEccCC
Q 020480 212 PKN----KSLEAMQIFKVHE--GVVEDVAWHLR----HEYLFGSVGDDQYLLIWDLRTP 260 (325)
Q Consensus 212 ~~~----~~~~~~~~~~~~~--~~v~~v~~~p~----~~~~l~s~~~dg~i~iwd~~~~ 260 (325)
... ... .+.....|. .....+++-|- +..+++.-+.||.+.+|+-+..
T Consensus 108 ~g~~~~g~~~-~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~ 165 (418)
T PF14727_consen 108 DGTVEHGNQY-QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF 165 (418)
T ss_pred CCCcccCcEE-EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence 211 001 122222232 22333444332 2367889999999999997664
No 435
>PRK13684 Ycf48-like protein; Provisional
Probab=69.17 E-value=80 Score=27.74 Aligned_cols=155 Identities=13% Similarity=0.037 Sum_probs=76.8
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEE-eCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVF-DYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vw-d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
.+.+.++.+.|++ .++++ +..|.+..- +-.. .....+ -.+-...++++.+.+++. .++. +..|.+
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s~~~gg--------~tW~~~--~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~ 237 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYSTWEPGQ--------TAWTPH--QRNSSRRLQSMGFQPDGN-LWML-ARGGQI 237 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEEcCCCC--------CeEEEe--eCCCcccceeeeEcCCCC-EEEE-ecCCEE
Confidence 3567888888876 45555 455655432 2111 012111 123345788999999887 5554 456766
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA 283 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p 283 (325)
++=....+.. +.. ...........+.++.+.|.+ .++ .++.+|.+. .-...++.++.+.....-......+.|..
T Consensus 238 ~~~s~d~G~s-W~~-~~~~~~~~~~~l~~v~~~~~~-~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~ 312 (334)
T PRK13684 238 RFNDPDDLES-WSK-PIIPEITNGYGYLDLAYRTPG-EIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD 312 (334)
T ss_pred EEccCCCCCc-ccc-ccCCccccccceeeEEEcCCC-CEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC
Confidence 5322232211 110 000001122357788898865 444 555677654 33344443222211112224577778776
Q ss_pred CCC-ccCCCCceEEee
Q 020480 284 SFR-LSHEDTCTCTHR 298 (325)
Q Consensus 284 ~~~-~~~~~d~~~~~~ 298 (325)
+++ +..+..+.+-.+
T Consensus 313 ~~~~~~~G~~G~il~~ 328 (334)
T PRK13684 313 PEKGFVLGQRGVLLRY 328 (334)
T ss_pred CCceEEECCCceEEEe
Confidence 555 355555655443
No 436
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=68.83 E-value=77 Score=27.42 Aligned_cols=127 Identities=11% Similarity=0.105 Sum_probs=70.7
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCC-cEEEec-----CCCceEEEEecCCCC----------
Q 020480 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP-DLRLRG-----HSTEGYGLSWSKFKE---------- 191 (325)
Q Consensus 128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~-----h~~~v~~l~~~p~~~---------- 191 (325)
-+.|+++|.+ .+.++....+...+||....... +...+ +.++.. .....+.+.|+....
T Consensus 25 ~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~----g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 25 AWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQP----LVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cceeEecCCC-CEEEecCCcceEEeecCCccccc----CCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 4678999988 57777777889999998721100 01111 222321 123566777764322
Q ss_pred -CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec-CCccEE-EEEeecC--CCcEEEEEecCCcEEEEEccCC
Q 020480 192 -GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV-HEGVVE-DVAWHLR--HEYLFGSVGDDQYLLIWDLRTP 260 (325)
Q Consensus 192 -~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~-~v~~~p~--~~~~l~s~~~dg~i~iwd~~~~ 260 (325)
..++.++.||+|.-|........ +......+.. ....|+ .+++... +..+.++=-..+.|.|||-.-.
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~-~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTR-MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCccc-ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 24788899999999986443220 0001112221 123333 3454432 3455566668899999986543
No 437
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=68.04 E-value=65 Score=26.23 Aligned_cols=107 Identities=9% Similarity=0.114 Sum_probs=63.8
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC---C---cEEEE-EccCCC-CCC
Q 020480 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD---Q---YLLIW-DLRTPS-VSK 264 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d---g---~i~iw-d~~~~~-~~~ 264 (325)
.|+.+...+.|.+|++..... .++..|..- +.|..+.++..| .+++|=-.+ . .+|+| +.|... ...
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~----~~~~~F~Tv-~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEEC----PLLCTFSTV-GRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCC----ceeEEEcch-hheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 454446667899999984322 345555433 678999999987 577665322 2 56665 333221 011
Q ss_pred Cee-Eeec---------------------cCCCeeEEEeCC-CCCccCCCCceEEeeecceeee
Q 020480 265 PVQ-SVVA---------------------HQSEVGVSILNA-SFRLSHEDTCTCTHRHSRYLLY 305 (325)
Q Consensus 265 ~~~-~~~~---------------------h~~~v~~i~~~p-~~~~~~~~d~~~~~~~~~~~~~ 305 (325)
++. .+-+ -..++.+++..| .|.+..+.+..+.+|.+.....
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTI 167 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEE
Confidence 222 1112 134678888888 6777666777888887665544
No 438
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.01 E-value=44 Score=34.56 Aligned_cols=162 Identities=11% Similarity=0.112 Sum_probs=84.2
Q ss_pred hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA 96 (325)
Q Consensus 17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 96 (325)
+|+++-+|+-+...-|..+...... ++.|.-..-.++....... +.++++|. -.|+++.+......
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~sht--Il~V~LvkPkpgvFv~~Iq-hlLvvaT~------~ei~ilgV~~~~~~----- 162 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHT--ILKVGLVKPKPGVFVPEIQ-HLLVVATP------VEIVILGVSFDEFT----- 162 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhh--heeeeeecCCCCcchhhhh-eeEEeccc------ceEEEEEEEecccc-----
Confidence 5666677777664444444444433 5555555433332222222 33445553 25777766533111
Q ss_pred CCCCcccCCCCCCCCCCCceEEEEEec-cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCC-----
Q 020480 97 RHYDDDRSDFGGFGCANGKVQIIQQIN-HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP----- 170 (325)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~----- 170 (325)
++. ..+.....++ -...|+|+....+| ++|.+ |.||.|+=.-+.....=.. .++..
T Consensus 163 -------~~~-------~~f~~~~~i~~dg~~V~~I~~t~nG-RIF~~-G~dg~lyEl~Yq~~~gWf~--~rc~Kiclt~ 224 (1311)
T KOG1900|consen 163 -------GEL-------SIFNTSFKISVDGVSVNCITYTENG-RIFFA-GRDGNLYELVYQAEDGWFG--SRCRKICLTK 224 (1311)
T ss_pred -------Ccc-------cccccceeeecCCceEEEEEeccCC-cEEEe-ecCCCEEEEEEeccCchhh--cccccccCch
Confidence 110 0111112333 35678899966666 55555 5666444222221100000 00000
Q ss_pred ---------cEEEe-cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCC
Q 020480 171 ---------DLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA 211 (325)
Q Consensus 171 ---------~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~ 211 (325)
+..+. .+.++|..+....... .+.+-+..|+|.+||+...
T Consensus 225 s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 225 SVLSSLVPSLLSVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hHHHHhhhhhhcCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccCC
Confidence 12223 5667899999987666 8999999999999999873
No 439
>PHA03098 kelch-like protein; Provisional
Probab=67.54 E-value=1e+02 Score=28.96 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=13.8
Q ss_pred cEEEEEecC-----CcEEEEEccCCC
Q 020480 241 YLFGSVGDD-----QYLLIWDLRTPS 261 (325)
Q Consensus 241 ~~l~s~~~d-----g~i~iwd~~~~~ 261 (325)
.+++.||.+ ..+.+||..+..
T Consensus 489 ~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 489 KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 566777654 467778877654
No 440
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=66.44 E-value=1e+02 Score=27.99 Aligned_cols=55 Identities=9% Similarity=-0.040 Sum_probs=38.1
Q ss_pred ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-CCCeeEEEeCCCCC
Q 020480 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QSEVGVSILNASFR 286 (325)
Q Consensus 228 ~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~i~~~p~~~ 286 (325)
+.+..++.||++ .++|.-..+|.+.+....-.+. +..+... ......+.|+-+..
T Consensus 217 ~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~---~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 217 GPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEK---LCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCeEEEEECCCC-CEEEEEECCCCEEEEECcccce---eEEeecCcCCCCcEEEEECCCc
Confidence 578999999997 5888888999998887654442 4444322 34556777776543
No 441
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=65.67 E-value=34 Score=30.01 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=36.8
Q ss_pred ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe----eecCCccEEEEEeecC---CCcEEEEEe
Q 020480 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI----FKVHEGVVEDVAWHLR---HEYLFGSVG 247 (325)
Q Consensus 180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~v~~v~~~p~---~~~~l~s~~ 247 (325)
..++|+|.|++. +++ +...|.|++++.. +... ..+.. ..........++++|+ +..+.++.+
T Consensus 3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~~~-g~~~---~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLV-AERSGRIWVVDKD-GSLK---TPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSC-EEE-EETTTEEEEEETT-TEEC---EEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCc-EEE-EeCCceEEEEeCC-CcCc---ceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 457899999976 544 5669999999933 2211 11111 2234567899999994 224444444
No 442
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=63.06 E-value=41 Score=22.91 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=24.6
Q ss_pred CceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDIN 209 (325)
Q Consensus 179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~ 209 (325)
.....+..+|++..+.++....+.|++|..+
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3457899999988667777788999999865
No 443
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=62.90 E-value=70 Score=26.88 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=42.2
Q ss_pred cCCCeeEEEecC------CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEec--CC-CCCeE
Q 020480 124 HDGEVNRARYMP------QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS--KF-KEGHL 194 (325)
Q Consensus 124 h~~~v~~v~~~~------~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--p~-~~~~l 194 (325)
+...|+|++-.+ +....++.|+++|.|.|.|... ...+..+.--.-++ .+.-. -+ ....+
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~a----------f~il~~~~lpsvPv-~i~~~G~~devdyRI 243 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQA----------FTILKQVQLPSVPV-FISVSGQYDEVDYRI 243 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchh----------heeEEEEecCCCce-EEEEEeeeeccceEE
Confidence 556788877554 2346899999999999999876 22232222212222 11111 11 23368
Q ss_pred EEEeCCCcEEE
Q 020480 195 LSGSDDAQICL 205 (325)
Q Consensus 195 ~s~s~dg~i~i 205 (325)
+.+++||.|++
T Consensus 244 ~Va~Rdg~iy~ 254 (257)
T PF14779_consen 244 VVACRDGKIYT 254 (257)
T ss_pred EEEeCCCEEEE
Confidence 88888888765
No 444
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=60.71 E-value=1.5e+02 Score=27.79 Aligned_cols=44 Identities=5% Similarity=-0.040 Sum_probs=34.9
Q ss_pred cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 287 (325)
.++|.|+..|-||+||--..+. -..+.+....|-.|..+.+|..
T Consensus 574 GyIa~as~kGDirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ 617 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKH 617 (776)
T ss_pred ceEEEecCCCceeeehhhcchh---hhcCcccccceeeeEeecCCcE
Confidence 4899999999999999765542 3445667788999999999985
No 445
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=57.35 E-value=1.7e+02 Score=27.36 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=28.2
Q ss_pred cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee--EEEeCCCCCc
Q 020480 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG--VSILNASFRL 287 (325)
Q Consensus 241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~--~i~~~p~~~~ 287 (325)
.+++.++.||.|+.+|..+++. +.+.+. .+.+. -+.+..+|++
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~---lW~~~~-~~~~~a~P~~~~~~g~~ 451 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKE---LWKFRT-PSGIQATPMTYEVNGKQ 451 (488)
T ss_pred CeEEEECCCCeEEEEECCCCce---eeEEEC-CCCceEcCEEEEeCCEE
Confidence 4677888999999999999984 555542 23332 2334445653
No 446
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=56.90 E-value=95 Score=28.47 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=78.3
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecC-CCceE-EEEecCCCCCeEEEEeCCC
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGH-STEGY-GLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~-~l~~~p~~~~~l~s~s~dg 201 (325)
...|..+-..|+|. .+..-+. .++.++++.+..-.. +.+... .+. ...|+ .+..-..+- -++.++.||
T Consensus 220 ~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~------rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~dG 290 (733)
T COG4590 220 FSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQI------RKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHEDG 290 (733)
T ss_pred ccchHhhEECCCCC-EEEEecC-CeEEEEeecccccch------hhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcCCC
Confidence 45677788899984 4444333 578888887621110 001000 110 01122 122222233 577788899
Q ss_pred cEEEE-eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480 202 QICLW-DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI 280 (325)
Q Consensus 202 ~i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~ 280 (325)
-|.-| |++.... ..+..++.++-....+..+.-..+ ..-+++-...|++.++.....+. +. +..--..+.-++
T Consensus 291 ~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~---lL-~~~~~~~~~~~~ 364 (733)
T COG4590 291 LVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKL---LL-FERAYQAPQLVA 364 (733)
T ss_pred ceeeeeeeecCCC-CcceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcc---ee-hhhhhcCcceee
Confidence 88776 5655433 223334444433344444432222 35677888888888887665542 22 222233566789
Q ss_pred eCCCCCc
Q 020480 281 LNASFRL 287 (325)
Q Consensus 281 ~~p~~~~ 287 (325)
++|++..
T Consensus 365 ~Sp~~~~ 371 (733)
T COG4590 365 MSPNQAY 371 (733)
T ss_pred eCcccch
Confidence 9998764
No 447
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=55.60 E-value=25 Score=34.29 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=56.8
Q ss_pred eEEEecCCCCcEEEEEecCC-----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480 129 NRARYMPQNPFLIATKTVSA-----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (325)
Q Consensus 129 ~~v~~~~~~~~~la~g~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 203 (325)
..+.|-|+| ..+|+-+.|| .|.++..+.... + .+- .-.+-...+..++|+.... +......+.+
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrH-----G--ef~-lr~~~dEk~~~~~wn~~s~--vlav~~~n~~ 318 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRH-----G--EFD-LRVGCDEKAFLENWNLLST--VLAVAEGNLL 318 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCccc-----C--Ccc-ccCCchhhhhhhhhhHHHH--HHHHhhcceE
Confidence 348899999 5888766544 466665543110 0 000 0112334567788876654 3334556789
Q ss_pred EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC
Q 020480 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ 250 (325)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg 250 (325)
.+|....-. + .-.....-..+.-+.|+|...+.+...+...
T Consensus 319 ~lwttkNyh--W----YLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~ 359 (1243)
T COG5290 319 KLWTTKNYH--W----YLKVERQIPGISYVKWHPEEKNTLLFRDGER 359 (1243)
T ss_pred EEEEccceE--E----EEEEeecCCCcceeeeccccCcEEEEecCCe
Confidence 999876531 0 1111122344666888887665554444333
No 448
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=55.15 E-value=31 Score=32.67 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=24.1
Q ss_pred CceEEEEecC---CCCCeEEEEeCCCcEEEEeCCCCCC
Q 020480 179 TEGYGLSWSK---FKEGHLLSGSDDAQICLWDINAAPK 213 (325)
Q Consensus 179 ~~v~~l~~~p---~~~~~l~s~s~dg~i~iwd~~~~~~ 213 (325)
..+..++.+. ++..++++.+.|+.+|+||+.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3455566655 2344899999999999999998743
No 449
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=54.99 E-value=1.8e+02 Score=26.95 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=40.5
Q ss_pred eEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE----Ee-cCCCceEEEEecCCC
Q 020480 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR----LR-GHSTEGYGLSWSKFK 190 (325)
Q Consensus 116 ~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~----~~-~h~~~v~~l~~~p~~ 190 (325)
++.......-..-..|+|.|++ .+|++-...|.|++++.... ....+.. .. ........|+++|+-
T Consensus 20 f~~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~--------~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETG--------EVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred cEEEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCC--------ceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3433334445667889999998 67777544699999975441 1111111 11 125678999999874
No 450
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=54.33 E-value=85 Score=27.61 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=34.0
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CCCcEEEEeCCCCC
Q 020480 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAP 212 (325)
Q Consensus 149 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~iwd~~~~~ 212 (325)
.|.++|+.+ .+.+.++.- ..++.+|..+.+..-+|++.+ .++.+.+||..+++
T Consensus 270 eVWv~D~~t----------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 270 EVWVYDLKT----------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEETTT----------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEEECCC----------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 455666655 333444442 235778999888765776654 57999999999883
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=54.32 E-value=1.6e+02 Score=27.37 Aligned_cols=102 Identities=9% Similarity=-0.162 Sum_probs=46.7
Q ss_pred cEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC---cEEEEeCCCCCC
Q 020480 139 FLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA---QICLWDINAAPK 213 (325)
Q Consensus 139 ~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~ 213 (325)
.+.+.||.++ .+..|+... +.+..+..+.........+.. ++. +.+.|+.++ .+..||.++..-
T Consensus 320 ~iYviGG~~~~~sve~ydp~~--------n~W~~~~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGD--------AAWVNMPSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred EEEEECCcCCCCceEEEECCC--------CeEEECCCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCCCEE
Confidence 6888887643 567777654 222222222211111112222 244 667766553 467788765421
Q ss_pred CCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 214 NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 214 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
. ..............+.+ ++ .+.+.|+ .+.+||.++.+
T Consensus 389 ~----~~~~m~~~r~~~~~~~~--~~-~IYv~GG---~~e~ydp~~~~ 426 (480)
T PHA02790 389 Q----FGPSTYYPHYKSCALVF--GR-RLFLVGR---NAEFYCESSNT 426 (480)
T ss_pred E----eCCCCCCccccceEEEE--CC-EEEEECC---ceEEecCCCCc
Confidence 1 01111111111112222 23 5666664 57789987654
No 452
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=53.30 E-value=1.7e+02 Score=26.17 Aligned_cols=70 Identities=14% Similarity=0.025 Sum_probs=37.5
Q ss_pred ecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecceeeecc---CeeEEEeecCCCc
Q 020480 247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRYLLYKF---PFFVLVFPLFPSL 320 (325)
Q Consensus 247 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 320 (325)
..+|.+--||..+.. ...+-..-.-.+.++.+|++.+ ..+...++++...-+-.-+. ...+...|-+|+.
T Consensus 196 ~~~GRl~~YD~~tK~----~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDN 269 (376)
T KOG1520|consen 196 DPTGRLFRYDPSTKV----TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDN 269 (376)
T ss_pred CCccceEEecCcccc----hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcc
Confidence 356777777776655 3333223345677899999885 44455555554332222222 2334445555554
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=52.34 E-value=97 Score=23.16 Aligned_cols=92 Identities=8% Similarity=0.042 Sum_probs=54.9
Q ss_pred EEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC--cccceEeeecCCccEEEEEeec---C-CCcEEEEEecCCcEEEEEc
Q 020480 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNK--SLEAMQIFKVHEGVVEDVAWHL---R-HEYLFGSVGDDQYLLIWDL 257 (325)
Q Consensus 184 l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~p---~-~~~~l~s~~~dg~i~iwd~ 257 (325)
-.|....+ .|+.++.-|.|.|.+........ .-..++.+. -...|++++--+ . +...|+.|+ ...|..||+
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 45666666 68888899999999876543210 112233333 345577765443 2 234555555 567889999
Q ss_pred cCCCCCCCeeEeeccCCCeeEEEeC
Q 020480 258 RTPSVSKPVQSVVAHQSEVGVSILN 282 (325)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~i~~~ 282 (325)
..... +.. +.-...|+++.+-
T Consensus 81 ~~N~d---~Fy-ke~~DGvn~i~~g 101 (136)
T PF14781_consen 81 ENNSD---LFY-KEVPDGVNAIVIG 101 (136)
T ss_pred ccCch---hhh-hhCccceeEEEEE
Confidence 88763 222 2334678888874
No 454
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.30 E-value=3.1e+02 Score=28.92 Aligned_cols=35 Identities=3% Similarity=0.105 Sum_probs=29.3
Q ss_pred cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (325)
Q Consensus 225 ~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~ 260 (325)
.+..+|..+...... .++.+-+..|+|++||+...
T Consensus 240 ~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCcceeeEecccc-ceeeeeccCceEEEEEccCC
Confidence 456789999988764 68889999999999999873
No 455
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=51.17 E-value=76 Score=21.59 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=24.7
Q ss_pred cEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 229 ~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~ 259 (325)
..+.+.++|++..++++....+.|++|..+.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4567889998877777888889999998653
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.99 E-value=1.3e+02 Score=25.83 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=46.1
Q ss_pred CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe------cCCcEEEEEccCCCCCCCeeEeec--
Q 020480 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTPSVSKPVQSVVA-- 271 (325)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~-- 271 (325)
...|++||....+- ...-.+-.+.|.++.|..+. .++++|. ....+..||+.+.. ...+..
T Consensus 15 C~~lC~yd~~~~qW------~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~----w~~~~~~~ 83 (281)
T PF12768_consen 15 CPGLCLYDTDNSQW------SSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQT----WSSLGGGS 83 (281)
T ss_pred CCEEEEEECCCCEe------ecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCe----eeecCCcc
Confidence 45699999876532 11112345689999998543 5776665 45668889988765 333332
Q ss_pred ---cCCCeeEEEeC
Q 020480 272 ---HQSEVGVSILN 282 (325)
Q Consensus 272 ---h~~~v~~i~~~ 282 (325)
-.++|..+.+.
T Consensus 84 s~~ipgpv~a~~~~ 97 (281)
T PF12768_consen 84 SNSIPGPVTALTFI 97 (281)
T ss_pred cccCCCcEEEEEee
Confidence 24678887774
No 457
>PRK13684 Ycf48-like protein; Provisional
Probab=49.72 E-value=1.8e+02 Score=25.52 Aligned_cols=111 Identities=5% Similarity=-0.160 Sum_probs=56.6
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~ 257 (325)
...+.++.+.|++. ++ ..+..|.+..- .+.+...+ ......-...++++.+.+++ .++++ +..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~-~v-~~g~~G~i~~s-~~~gg~tW----~~~~~~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YV-AVSSRGNFYST-WEPGQTAW----TPHQRNSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCe-EE-EEeCCceEEEE-cCCCCCeE----EEeeCCCcccceeeeEcCCC-CEEEE-ecCCEEEEccC
Confidence 45678899988765 44 44445655431 11121111 11112334578889999876 45544 45676653223
Q ss_pred cCCCCCCCeeEeec-cCCCeeEEEeCCCCCc-cCCCCceEEe
Q 020480 258 RTPSVSKPVQSVVA-HQSEVGVSILNASFRL-SHEDTCTCTH 297 (325)
Q Consensus 258 ~~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~-~~~~d~~~~~ 297 (325)
..+..++.+..-.. -...+.++.+.|++.+ .++.++.+..
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~ 284 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV 284 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE
Confidence 33333222111101 1234778889888774 5555554443
No 458
>PHA02790 Kelch-like protein; Provisional
Probab=49.56 E-value=1.2e+02 Score=28.12 Aligned_cols=19 Identities=5% Similarity=-0.134 Sum_probs=11.9
Q ss_pred cEEEEEecCC---eEEEEeCCC
Q 020480 139 FLIATKTVSA---EVYVFDYSK 157 (325)
Q Consensus 139 ~~la~g~~dg---~v~vwd~~~ 157 (325)
.+.+.||.++ .+..||..+
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCC
Confidence 5777776543 356677655
No 459
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=48.59 E-value=2.9e+02 Score=27.61 Aligned_cols=120 Identities=8% Similarity=0.073 Sum_probs=64.9
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 204 (325)
...+.++.+++. -+..|.-||++-.|--..... . ...|...+..-..+|.++++..+ ++-++.+|.|.
T Consensus 581 ~~~v~~l~~ss~---Slgagl~dgt~a~y~rap~gS---w--d~ep~~~~~~g~lPvrsla~~ed----~~was~gG~V~ 648 (925)
T KOG3522|consen 581 HESVKLLLFSSG---SLGAGLIDGTLAVYGRAPSGS---W--DGEPNISIPTGSLPVRSLAFQED----FVWASEGGCVH 648 (925)
T ss_pred hhhhhhhhcccc---ccccCccCCccccccCCCCCC---C--CCCCccccccCCccccchhhhhc----eeeeecCCceE
Confidence 345666666663 255556677666553321000 0 01122222333456777777533 55667889999
Q ss_pred EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
++...+....+. ......|...|+++...-++ ++++-.....+++++..+..
T Consensus 649 vi~~tt~~~~~~---leahqee~~~Vthm~~~~~g--VwvafasG~~~rlfhtetl~ 700 (925)
T KOG3522|consen 649 VIPSTTFIRSWD---LEAHQEEAHSVTHMLYLDNG--VWVAFASGDEERLFHTETLW 700 (925)
T ss_pred EEechhccccch---hHHHHhhcceEEEEEeeCCc--eEEEEcCCCEEEEecccccC
Confidence 998876533221 11223455678888887554 44444444456666665543
No 460
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=47.65 E-value=2.3e+02 Score=26.20 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=37.2
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceE-ee-ecCCccEEEEEeecC
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ-IF-KVHEGVVEDVAWHLR 238 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~-~~~~~~v~~v~~~p~ 238 (325)
-...+.|+|.|++. +|++--..|.|++++........ ...+. .. .........|+++|+
T Consensus 29 L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~-~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 29 LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKV-VFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceee-eecCCceeccCCCCceeeEEECCC
Confidence 34668999999987 66665557999999865432210 00011 11 113567899999986
No 461
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=47.51 E-value=1.9e+02 Score=25.14 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=50.3
Q ss_pred ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc-cceEeeec-----CCccEEEEEeecCC-----------CcE
Q 020480 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKV-----HEGVVEDVAWHLRH-----------EYL 242 (325)
Q Consensus 180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~-----~~~~v~~v~~~p~~-----------~~~ 242 (325)
.-+.|+++|.+. +.++....+...+||.......... ..+.++.. .....+.+.|+... ...
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999998 8888888999999999722111000 11222221 12346666666421 234
Q ss_pred EEEEecCCcEEEEEccC
Q 020480 243 FGSVGDDQYLLIWDLRT 259 (325)
Q Consensus 243 l~s~~~dg~i~iwd~~~ 259 (325)
++.+++||+|.-|....
T Consensus 103 Fif~tEdGTisaW~p~v 119 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPAL 119 (336)
T ss_pred EEEEeCCceEEeecCcC
Confidence 67889999999998543
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=46.34 E-value=2.3e+02 Score=25.72 Aligned_cols=111 Identities=7% Similarity=-0.047 Sum_probs=57.8
Q ss_pred CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec--CCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (325)
Q Consensus 178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw 255 (325)
...++++.|.+++. ++++ +..|.+.. ....+.. +.......... ....+.++.|.+++ .. +.++..|.+..-
T Consensus 280 ~~~l~~v~~~~dg~-l~l~-g~~G~l~~-S~d~G~~-~~~~~f~~~~~~~~~~~l~~v~~~~d~-~~-~a~G~~G~v~~s 353 (398)
T PLN00033 280 ARRIQNMGWRADGG-LWLL-TRGGGLYV-SKGTGLT-EEDFDFEEADIKSRGFGILDVGYRSKK-EA-WAAGGSGILLRS 353 (398)
T ss_pred ccceeeeeEcCCCC-EEEE-eCCceEEE-ecCCCCc-ccccceeecccCCCCcceEEEEEcCCC-cE-EEEECCCcEEEe
Confidence 45678999998887 5544 45666543 2222211 00001111111 22358889998765 34 456667766554
Q ss_pred EccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceE
Q 020480 256 DLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTC 295 (325)
Q Consensus 256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~ 295 (325)
. ..++.++....-..-...+..+.|.++++. ..+.++.+
T Consensus 354 ~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 354 T-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred C-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 3 333322122211223456889999776663 55555554
No 463
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=45.83 E-value=51 Score=32.42 Aligned_cols=131 Identities=11% Similarity=-0.024 Sum_probs=72.4
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE---EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCc
Q 020480 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR---LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS 216 (325)
Q Consensus 140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 216 (325)
-+..|+.++.+.++.-.. + ..+... .......+.++.+++. -+..|.-||++-.+--.... .+.
T Consensus 549 Tic~gtq~ssisissss~--------~-s~ke~~~~~~spe~~~v~~l~~ss~---Slgagl~dgt~a~y~rap~g-Swd 615 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSL--------D-SIKEVTSEPPSPEHESVKLLLFSSG---SLGAGLIDGTLAVYGRAPSG-SWD 615 (925)
T ss_pred cccccCccceeEEeeccC--------C-cccceeccCCCCchhhhhhhhcccc---ccccCccCCccccccCCCCC-CCC
Confidence 467788899999987662 0 111111 1122345666666553 35555566666554322211 111
Q ss_pred ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480 217 LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL 287 (325)
Q Consensus 217 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 287 (325)
..+...+.-...+|...++..+ ++-++.+|.|.++...+............|...|+++....+|.+
T Consensus 616 ~ep~~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVw 682 (925)
T KOG3522|consen 616 GEPNISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVW 682 (925)
T ss_pred CCCccccccCCccccchhhhhc----eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceE
Confidence 1122222334456777777532 456788999999998876532122222335567888888888775
No 464
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=45.62 E-value=2.2e+02 Score=25.33 Aligned_cols=102 Identities=8% Similarity=0.084 Sum_probs=52.5
Q ss_pred ceEEEEecCCCCCeEEEEe-----------CCC-cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe
Q 020480 180 EGYGLSWSKFKEGHLLSGS-----------DDA-QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG 247 (325)
Q Consensus 180 ~v~~l~~~p~~~~~l~s~s-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~ 247 (325)
....|+|.+++. ++++-. ..+ .|.+++-..+... ......+...-.....+++.+++ ++++ +
T Consensus 15 ~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~--~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~ 88 (367)
T TIGR02604 15 NPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGK--YDKSNVFAEELSMVTGLAVAVGG--VYVA-T 88 (367)
T ss_pred CCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC--cceeEEeecCCCCccceeEecCC--EEEe-C
Confidence 456889999988 565542 223 6777754332111 01123333333456788888875 4543 4
Q ss_pred cCCcEEEEEccCCCCC----CCee-Eeec----cCCCeeEEEeCCCCCc
Q 020480 248 DDQYLLIWDLRTPSVS----KPVQ-SVVA----HQSEVGVSILNASFRL 287 (325)
Q Consensus 248 ~dg~i~iwd~~~~~~~----~~~~-~~~~----h~~~v~~i~~~p~~~~ 287 (325)
.....++.|....... +.+. .+.. +....+.++|.|+|.+
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L 137 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL 137 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE
Confidence 4443344454322110 0111 1211 1234778999999986
No 465
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=44.75 E-value=59 Score=31.76 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=27.5
Q ss_pred CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCC
Q 020480 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP 212 (325)
Q Consensus 179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 212 (325)
..++++.-+|.+. -+++++.||+|++|+.....
T Consensus 15 e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCCc-eEEEEecCCcEEEEeecccc
Confidence 3467888889888 79999999999999987553
No 466
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=44.07 E-value=3.4e+02 Score=27.11 Aligned_cols=137 Identities=12% Similarity=0.224 Sum_probs=78.2
Q ss_pred eccCCCeeEEEec---CC---CCcEEEEEecCCeEEEEeCCCCCC-----CCCCCCCCCCcEEEecC---CCceEEEEec
Q 020480 122 INHDGEVNRARYM---PQ---NPFLIATKTVSAEVYVFDYSKHPS-----KPPLDGACSPDLRLRGH---STEGYGLSWS 187 (325)
Q Consensus 122 ~~h~~~v~~v~~~---~~---~~~~la~g~~dg~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~h---~~~v~~l~~~ 187 (325)
+.-..+|..|+|. .. ...+|++ -....+.|+...-... .....-...++..+..+ ..+..+++|+
T Consensus 76 i~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~Fn 154 (765)
T PF10214_consen 76 IDDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFN 154 (765)
T ss_pred cCCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEec
Confidence 3577889999998 21 1235555 4556788887221100 00000112344444322 2356799999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCC----------ccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480 188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE----------GVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (325)
Q Consensus 188 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~ 257 (325)
|.....||.....|...||++....+... ..+.....+. +.-..+.|.++. +.|+.++ ...+.++|+
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~-~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lLv~~-r~~l~~~d~ 231 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDIKGRPKRKS-SNLRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLLVCN-RSKLMLIDF 231 (765)
T ss_pred cCccceEEEEeccCcEEEEEeccccccCC-cceeeccCCCccccCCCcccCcceeeEecCCC-CEEEEEc-CCceEEEEC
Confidence 98888999999999999999932221110 0111111111 223367887765 4555555 456889999
Q ss_pred cCCCC
Q 020480 258 RTPSV 262 (325)
Q Consensus 258 ~~~~~ 262 (325)
.+...
T Consensus 232 ~~~~~ 236 (765)
T PF10214_consen 232 ESNWQ 236 (765)
T ss_pred CCCCc
Confidence 87764
No 467
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=42.75 E-value=48 Score=16.83 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=13.3
Q ss_pred eEEEEecCCCCCeEEEEeCCCcEEE
Q 020480 181 GYGLSWSKFKEGHLLSGSDDAQICL 205 (325)
Q Consensus 181 v~~l~~~p~~~~~l~s~s~dg~i~i 205 (325)
..+++.+++|. ++++=+....|++
T Consensus 4 P~gvav~~~g~-i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGN-IYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSE-EEEEECCCTEEEE
T ss_pred CcEEEEeCCCC-EEEEECCCCEEEE
Confidence 35666666655 5555555555554
No 468
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=42.59 E-value=49 Score=17.09 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=16.9
Q ss_pred EEEEEecCCcEEEEEccCCC
Q 020480 242 LFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 242 ~l~s~~~dg~i~iwd~~~~~ 261 (325)
.++.++.+|.+..+|.++++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EEEEEcCCCEEEEEEcccCc
Confidence 56678889999999998876
No 469
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=42.04 E-value=2.3e+02 Score=24.54 Aligned_cols=146 Identities=16% Similarity=0.081 Sum_probs=86.0
Q ss_pred EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceEEEEecCCCCCeEEEEe
Q 020480 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEGHLLSGS 198 (325)
Q Consensus 120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s 198 (325)
..+.-.+.+..+.++. ++...+..+.-+++.|+..+. +|.. .+....+--.++.. .|+ +...+.
T Consensus 81 ~~i~~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~---------sP~~~~~lnt~gyaygv~v--sGn-~aYVad 145 (370)
T COG5276 81 SVINARDLFADVRVSE---EYVYVADWSSGLRIVDISTPD---------SPTLIGFLNTDGYAYGVYV--SGN-YAYVAD 145 (370)
T ss_pred EEEehhhhhheeEecc---cEEEEEcCCCceEEEeccCCC---------CcceeccccCCceEEEEEe--cCC-EEEEee
Confidence 3455566777888876 356666677779999998721 2221 11111123334444 466 777778
Q ss_pred CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV 278 (325)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 278 (325)
.|.-..+.|+....+. .....+.........++.+ | ++...+..|+-+.+-|+........+.... ....+.+
T Consensus 146 lddgfLivdvsdpssP---~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~s 218 (370)
T COG5276 146 LDDGFLIVDVSDPSSP---QLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYS 218 (370)
T ss_pred ccCcEEEEECCCCCCc---eeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEE
Confidence 7777888999876542 1122222233344666666 3 455567789999999998877522222222 1226777
Q ss_pred EEeCCCCCc
Q 020480 279 SILNASFRL 287 (325)
Q Consensus 279 i~~~p~~~~ 287 (325)
+..+++..+
T Consensus 219 v~vsdnr~y 227 (370)
T COG5276 219 VSVSDNRAY 227 (370)
T ss_pred EEecCCeeE
Confidence 777776554
No 470
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=40.80 E-value=3.2e+02 Score=25.86 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=21.6
Q ss_pred cEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (325)
Q Consensus 241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 270 (325)
.+++.++.+|.++.+|.++++. +....
T Consensus 473 ~lvf~g~~~G~l~a~D~~TGe~---lw~~~ 499 (527)
T TIGR03075 473 DLVFYGTLEGYFKAFDAKTGEE---LWKFK 499 (527)
T ss_pred cEEEEECCCCeEEEEECCCCCE---eEEEe
Confidence 4666788899999999999984 66654
No 471
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=40.50 E-value=1e+02 Score=28.12 Aligned_cols=66 Identities=15% Similarity=-0.013 Sum_probs=33.7
Q ss_pred CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe-eec---------------CCccEEEEEeecCCCcE
Q 020480 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI-FKV---------------HEGVVEDVAWHLRHEYL 242 (325)
Q Consensus 179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~---------------~~~~v~~v~~~p~~~~~ 242 (325)
.-+++|..|.+.+.+.+++-.+|.|+.||+......+. ... +-+ -.+...-+..|.+|.++
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl---~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRl 388 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL---VGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRL 388 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE---EEEEE-BTTTT-B--TTS------S----EEE-TTSSEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE---EeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEE
Confidence 45799999999997778888999999999987654311 111 100 11234667777888777
Q ss_pred EEEEe
Q 020480 243 FGSVG 247 (325)
Q Consensus 243 l~s~~ 247 (325)
.+|.|
T Consensus 389 YvTnS 393 (461)
T PF05694_consen 389 YVTNS 393 (461)
T ss_dssp EEE--
T ss_pred EEEee
Confidence 76665
No 472
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=40.43 E-value=86 Score=21.49 Aligned_cols=54 Identities=13% Similarity=0.020 Sum_probs=30.8
Q ss_pred EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeC
Q 020480 144 KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208 (325)
Q Consensus 144 g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~ 208 (325)
+..+|.+.-||..+ +....+...-.....++.++++..++++-..-..|.-+-+
T Consensus 33 ~~~~GRll~ydp~t-----------~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 33 GRPTGRLLRYDPST-----------KETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp T---EEEEEEETTT-----------TEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CCCCcCEEEEECCC-----------CeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 44567888888876 2233333323456899999999866666555555554444
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=38.92 E-value=46 Score=32.41 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=26.6
Q ss_pred ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 228 ~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
..+.++.-+|.+ .-++.+..||+|++|+....+
T Consensus 15 e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCC-ceEEEEecCCcEEEEeecccc
Confidence 346778888976 578899999999999976544
No 474
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=37.25 E-value=73 Score=17.42 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=19.4
Q ss_pred EEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480 243 FGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (325)
Q Consensus 243 l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 270 (325)
+..++.+|.|.-.|.++++. +..++
T Consensus 3 v~~~~~~g~l~AlD~~TG~~---~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKV---LWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSE---EEEEE
T ss_pred EEEeCCCCEEEEEECCCCCE---EEeee
Confidence 44569999999999999984 55553
No 475
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=37.21 E-value=2.8e+02 Score=24.08 Aligned_cols=76 Identities=16% Similarity=0.026 Sum_probs=47.6
Q ss_pred CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256 (325)
Q Consensus 177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd 256 (325)
-.+-+.++.++.+ +...+..+.-++|.|+.+..+.. +..+-...+.-+++..+ | ++...+.-|.-+.+.|
T Consensus 85 ~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~----~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivd 154 (370)
T COG5276 85 ARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPT----LIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVD 154 (370)
T ss_pred hhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcc----eeccccCCceEEEEEec--C-CEEEEeeccCcEEEEE
Confidence 3455667777643 67777888889999999876531 11122122334444443 4 5666666566677899
Q ss_pred ccCCCC
Q 020480 257 LRTPSV 262 (325)
Q Consensus 257 ~~~~~~ 262 (325)
+.....
T Consensus 155 vsdpss 160 (370)
T COG5276 155 VSDPSS 160 (370)
T ss_pred CCCCCC
Confidence 988765
No 476
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=35.24 E-value=3.8e+02 Score=25.02 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=18.3
Q ss_pred eEEEEeCCCcEEEEeCCCCCC
Q 020480 193 HLLSGSDDAQICLWDINAAPK 213 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~ 213 (325)
.++.++.++.|.-+|.++++.
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred eEEEecCCCeEEEEECCCCCE
Confidence 688888999999999998854
No 477
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=34.31 E-value=3.9e+02 Score=24.91 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=22.4
Q ss_pred cEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 229 ~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
-++++.+.+.+..+++|+-.-..|-..|.++++
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence 488999999555677776666688888877765
No 478
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=33.90 E-value=3.1e+02 Score=23.69 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=31.3
Q ss_pred cEEEEEec-----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc----EEEEeCC
Q 020480 139 FLIATKTV-----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ----ICLWDIN 209 (325)
Q Consensus 139 ~~la~g~~-----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~----i~iwd~~ 209 (325)
++++.|+. ...+..||+.+ ..+..+..+.... .........++. +++.|+.++. +.+||++
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~--------~~W~~~~~~p~~~-r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLET--------QEWFELPDFPGEP-RVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCC--------CCeeECCCCCCCC-CCcceEEEECCE-EEEEcCCCCccccceEEEecC
Confidence 67777764 23677888775 3333222221111 111111122344 6777776542 4678877
Q ss_pred CC
Q 020480 210 AA 211 (325)
Q Consensus 210 ~~ 211 (325)
+.
T Consensus 195 ~~ 196 (323)
T TIGR03548 195 KN 196 (323)
T ss_pred CC
Confidence 64
No 479
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=33.65 E-value=2.8e+02 Score=23.10 Aligned_cols=125 Identities=12% Similarity=0.082 Sum_probs=66.0
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc----EEEecCCCceEEEE--ecCCCCCeEEEEeCCC
Q 020480 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD----LRLRGHSTEGYGLS--WSKFKEGHLLSGSDDA 201 (325)
Q Consensus 128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~l~--~~p~~~~~l~s~s~dg 201 (325)
|..+...+.-. .+++- .|+.++++++..............+. .........+...+ -...+. ..+......
T Consensus 38 I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk 114 (275)
T PF00780_consen 38 ITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKK 114 (275)
T ss_pred EEEEEEecccC-EEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccc-eEEEEEECC
Confidence 89999998763 44442 45999999997633221100000000 00112233444444 122333 344444455
Q ss_pred cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
.|.+|.......... ...+.+. -...+.+++|.. +.++.|..+ ...+.|+.++.
T Consensus 115 ~i~i~~~~~~~~~f~-~~~ke~~-lp~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~ 168 (275)
T PF00780_consen 115 KILIYEWNDPRNSFS-KLLKEIS-LPDPPSSIAFLG---NKICVGTSK-GFYLIDLNTGS 168 (275)
T ss_pred EEEEEEEECCccccc-ceeEEEE-cCCCcEEEEEeC---CEEEEEeCC-ceEEEecCCCC
Confidence 899998876422110 1233333 346788899983 356666544 47788888655
No 480
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.27 E-value=4.9e+02 Score=25.77 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=44.6
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw 206 (325)
..-++..+|..-.-+. +.-..|+||+... ..+.++.-....+-.+.|+.+.. |+....+|++++|
T Consensus 45 GpIAV~r~p~~~~~~~--~a~~~I~If~~sG-----------~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy 109 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLY--SARPYIRIFNISG-----------QLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVY 109 (829)
T ss_pred CceEEEeccccccccc--ccceeEEEEeccc-----------cchHHHHhcCCCeeeecccCCce--EEEEeccceEEEe
Confidence 3335666664311122 3345688999876 22333322233788999998764 8888999999999
Q ss_pred eCCCC
Q 020480 207 DINAA 211 (325)
Q Consensus 207 d~~~~ 211 (325)
++-..
T Consensus 110 ~~~ge 114 (829)
T KOG2280|consen 110 GLLGE 114 (829)
T ss_pred ecchh
Confidence 98653
No 481
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=33.02 E-value=2.1e+02 Score=25.77 Aligned_cols=87 Identities=13% Similarity=0.004 Sum_probs=42.1
Q ss_pred EecCCCCCeEEEEeCCCc--EEEEeCCCCCCCCcccceEeeecCCc-cEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 185 SWSKFKEGHLLSGSDDAQ--ICLWDINAAPKNKSLEAMQIFKVHEG-VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 185 ~~~p~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
+|.++|..+|+++..||. +.+-|+.++. +..+..... ......++|++ +.++-......|+-.|+++.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~-------i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE-------ITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E-------EEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE-------EEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCc
Confidence 678888867777776765 5555776652 334443322 22245667876 455445556688889999877
Q ss_pred CCCCeeEeeccCCCeeEEEeC
Q 020480 262 VSKPVQSVVAHQSEVGVSILN 282 (325)
Q Consensus 262 ~~~~~~~~~~h~~~v~~i~~~ 282 (325)
. -..+......+-...|.
T Consensus 114 ~---~~vy~~p~~~~g~gt~v 131 (386)
T PF14583_consen 114 E---RVVYEVPDDWKGYGTWV 131 (386)
T ss_dssp E---EEEEE--TTEEEEEEEE
T ss_pred E---EEEEECCccccccccee
Confidence 3 23333344445445554
No 482
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=31.95 E-value=2.2e+02 Score=21.33 Aligned_cols=59 Identities=7% Similarity=-0.068 Sum_probs=31.7
Q ss_pred CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec--cCCCeeEEEeCCCCCc
Q 020480 227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--HQSEVGVSILNASFRL 287 (325)
Q Consensus 227 ~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~ 287 (325)
+..+.---|.++..-++++|=.|++|+.|.+..... .+..+.. +..+...++|-|...+
T Consensus 10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p--~l~~l~~~~s~~~~~G~~~lPK~~~ 70 (136)
T PF08954_consen 10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESP--YLHYLSEYRSPEPQKGFAFLPKRAC 70 (136)
T ss_dssp -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTT--SEEEEEEE--SS--SEEEE--GGGS
T ss_pred CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCC--ceEEccccccCCCeEeeEecCcccC
Confidence 345666677887655666777899999999987753 2444432 4567788999986543
No 483
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=28.72 E-value=97 Score=17.04 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=14.1
Q ss_pred eEEEEeCCCcEEEEeCC
Q 020480 193 HLLSGSDDAQICLWDIN 209 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~ 209 (325)
.++.++.||.+..+|.+
T Consensus 23 ~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 23 RVYVGTGDGNLYALDAA 39 (40)
T ss_dssp EEEEE-TTSEEEEEETT
T ss_pred EEEEEcCCCEEEEEeCC
Confidence 78889999999999875
No 484
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=27.31 E-value=4.2e+02 Score=23.11 Aligned_cols=158 Identities=13% Similarity=0.073 Sum_probs=79.2
Q ss_pred CCCeeEEEecCCCCcEEEEEecCCe------EEEEeCCCCCCCCCCCCCCCCcEEEecCCC--------ceEEEEecCCC
Q 020480 125 DGEVNRARYMPQNPFLIATKTVSAE------VYVFDYSKHPSKPPLDGACSPDLRLRGHST--------EGYGLSWSKFK 190 (325)
Q Consensus 125 ~~~v~~v~~~~~~~~~la~g~~dg~------v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~l~~~p~~ 190 (325)
-+.+..+.+.+.+. .+.+-+.+|. +..+++........ .-.......+..-.+ -.-+|++.+++
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIG-GVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCcc-ceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 36778888986553 4455467776 55555543110000 000000111111111 22367776666
Q ss_pred CCeEEEEeCC------CcEEEEeCCCCCCCCcccceE---------eeecCCccEEEEEeecCCCcEEEEEec-----CC
Q 020480 191 EGHLLSGSDD------AQICLWDINAAPKNKSLEAMQ---------IFKVHEGVVEDVAWHLRHEYLFGSVGD-----DQ 250 (325)
Q Consensus 191 ~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~v~~v~~~p~~~~~l~s~~~-----dg 250 (325)
. ++++.-.+ ..|..++.. +.....+.... .-...+...-+++++|++. .|.++.. |+
T Consensus 97 ~-~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 97 S-FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESPLKQDG 173 (326)
T ss_pred C-EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECccccCCC
Confidence 6 77776666 788888876 33221111111 1122456789999999985 3333332 22
Q ss_pred ---------cEEEEEccCCCCCCCeeEe----ec-----cCCCeeEEEeCCCCCc
Q 020480 251 ---------YLLIWDLRTPSVSKPVQSV----VA-----HQSEVGVSILNASFRL 287 (325)
Q Consensus 251 ---------~i~iwd~~~~~~~~~~~~~----~~-----h~~~v~~i~~~p~~~~ 287 (325)
.++++.........+...+ .. ....|..+.+-+++++
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 1555555432211122222 11 2456888999998874
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=25.84 E-value=2.2e+02 Score=19.46 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=28.5
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc
Q 020480 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY 251 (325)
Q Consensus 194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~ 251 (325)
++.+..+|.+..||..+++ ...+...-.-.+.|+.++++..++++-+....
T Consensus 30 ~le~~~~GRll~ydp~t~~-------~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPSTKE-------TTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp HHHT---EEEEEEETTTTE-------EEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred eecCCCCcCEEEEECCCCe-------EEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 3344567888889988752 22232223357889999998656655544333
No 486
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.76 E-value=6.7e+02 Score=24.92 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=23.6
Q ss_pred CCeeEEEecCCCCcEEEEEecCCeEEEEeCCC
Q 020480 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSK 157 (325)
Q Consensus 126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~ 157 (325)
+.+-.+.|+.+. .|.+-..+|++++|++..
T Consensus 84 ~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 84 GELIGMGWSDDE--ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred CCeeeecccCCc--eEEEEeccceEEEeecch
Confidence 377788999865 455558999999999875
No 487
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=25.13 E-value=7.1e+02 Score=25.00 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.9
Q ss_pred eEEEEeCCCcEEEEeCCCCCC
Q 020480 193 HLLSGSDDAQICLWDINAAPK 213 (325)
Q Consensus 193 ~l~s~s~dg~i~iwd~~~~~~ 213 (325)
.++.++.|+.+.-.|.++++.
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~ 282 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKL 282 (764)
T ss_pred EEEEecCCCeEEEEECCCCCE
Confidence 688888999999999998853
No 488
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=25.08 E-value=37 Score=16.68 Aligned_cols=8 Identities=25% Similarity=0.276 Sum_probs=5.9
Q ss_pred EeCCCCCc
Q 020480 280 ILNASFRL 287 (325)
Q Consensus 280 ~~~p~~~~ 287 (325)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 47888875
No 489
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=23.46 E-value=8.1e+02 Score=25.06 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=47.2
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCCCCeEEE-EeCCC-----cEEEEeCCCCCCCCcccce
Q 020480 148 AEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLLS-GSDDA-----QICLWDINAAPKNKSLEAM 220 (325)
Q Consensus 148 g~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s-~s~dg-----~i~iwd~~~~~~~~~~~~~ 220 (325)
+.+.+=|... .. ...+ ..++.+|.+-+|+|+|+ .|+- .+..+ .|.+-|+++.... +
T Consensus 329 ~~L~~~D~dG----------~n-~~~ve~~~~~~i~sP~~SPDG~-~vAY~ts~e~~~g~s~vYv~~L~t~~~~-----~ 391 (912)
T TIGR02171 329 GNLAYIDYTK----------GA-SRAVEIEDTISVYHPDISPDGK-KVAFCTGIEGLPGKSSVYVRNLNASGSG-----L 391 (912)
T ss_pred CeEEEEecCC----------CC-ceEEEecCCCceecCcCCCCCC-EEEEEEeecCCCCCceEEEEehhccCCC-----c
Confidence 4677767665 22 2223 45678899999999999 5554 44433 4888888875432 1
Q ss_pred EeeecCCccEEEEEeecCCCcEEEEE
Q 020480 221 QIFKVHEGVVEDVAWHLRHEYLFGSV 246 (325)
Q Consensus 221 ~~~~~~~~~v~~v~~~p~~~~~l~s~ 246 (325)
..+.-.+..|..-....+|.+.|+-.
T Consensus 392 vkl~ve~aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 392 VKLPVENAAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred eEeecccccccceEecCCCCeEEEEE
Confidence 22232344454445555555555433
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=22.37 E-value=8.1e+02 Score=24.71 Aligned_cols=75 Identities=7% Similarity=0.138 Sum_probs=43.5
Q ss_pred EEEEeecCCCcEEEEEecCCc-----EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecceee
Q 020480 231 EDVAWHLRHEYLFGSVGDDQY-----LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRYLL 304 (325)
Q Consensus 231 ~~v~~~p~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~~~ 304 (325)
..++|-|.| ..+++-+.||. |.++....-+... ...-.+....+..++|+-...+ ..+....+++|....+.
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGe-f~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGE-FDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCC-ccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceE
Confidence 347999998 58888775543 5555432221100 1111233445667788776654 44556788888877777
Q ss_pred ecc
Q 020480 305 YKF 307 (325)
Q Consensus 305 ~~~ 307 (325)
|-.
T Consensus 328 WYL 330 (1243)
T COG5290 328 WYL 330 (1243)
T ss_pred EEE
Confidence 643
No 491
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=22.33 E-value=1.3e+02 Score=28.91 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=46.0
Q ss_pred CCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc-EEEEeCCCCCCCCccc-ceEeeecC-----CccEEEEEeecCCCc
Q 020480 169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ-ICLWDINAAPKNKSLE-AMQIFKVH-----EGVVEDVAWHLRHEY 241 (325)
Q Consensus 169 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~-~~~~~~~~-----~~~v~~v~~~p~~~~ 241 (325)
..+..++.|..++..++|.+.+. ++++++..|. |.++.+..... ... +.+.+..+ ...+..++|+... +
T Consensus 306 a~i~QfkAhkspiSaLcfdqsgs-llViasi~g~nVnvfRimet~~--t~~~~~qs~~~s~ra~t~aviqdicfs~~s-~ 381 (788)
T KOG2109|consen 306 ADIRQFKAHKSPISALCFDQSGS-LLVIASITGRNVNVFRIMETVC--TVNVSDQSLVVSPRANTAAVIQDICFSEVS-T 381 (788)
T ss_pred hhhhheeeecCcccccccccCce-EEEEEeeccceeeeEEeccccc--cccccccccccchhcchHHHHHHHhhhhhc-c
Confidence 34566789999999999999998 7888876653 55554432211 000 01111111 1234456777664 5
Q ss_pred EEEEEecCCc
Q 020480 242 LFGSVGDDQY 251 (325)
Q Consensus 242 ~l~s~~~dg~ 251 (325)
+++.++.+|.
T Consensus 382 ~r~~gsc~Ge 391 (788)
T KOG2109|consen 382 IRTAGSCEGE 391 (788)
T ss_pred eEeecccCCC
Confidence 6766666654
No 492
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=22.15 E-value=9.1e+02 Score=25.18 Aligned_cols=105 Identities=9% Similarity=-0.050 Sum_probs=58.0
Q ss_pred EEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe--eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI--FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 184 l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
.+..|... .+++ +....+++||+...+ +++. ++.-...|..+++.. ..++.|...-+++++-.+...
T Consensus 939 ~Ai~~f~~-~~La-gvG~~l~~YdlG~K~------lLRk~e~k~~p~~Is~iqt~~---~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 939 GAICPFQG-RVLA-GVGRFLRLYDLGKKK------LLRKCELKFIPNRISSIQTYG---ARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred eEEeccCC-EEEE-ecccEEEEeeCChHH------HHhhhhhccCceEEEEEeecc---eEEEEeeccceEEEEEEecCC
Confidence 34556555 4444 345789999997542 2221 222345677787753 356677766677776666544
Q ss_pred CCCCeeEe--eccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480 262 VSKPVQSV--VAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY 302 (325)
Q Consensus 262 ~~~~~~~~--~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~ 302 (325)
. .+..+ ..-...|+++.+-..+.+.+ .|..+.+|-+|.
T Consensus 1008 n--~l~~fadD~~pR~Vt~~~~lD~~tvag-aDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1008 N--QLIVFADDPVPRHVTALELLDYDTVAG-ADRFGNIAVVRI 1047 (1205)
T ss_pred C--eEEEEeCCCccceeeEEEEecCCceee-ccccCcEEEEEC
Confidence 2 24443 22234566666655555433 455666665544
No 493
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=21.98 E-value=5.2e+02 Score=22.29 Aligned_cols=96 Identities=6% Similarity=-0.070 Sum_probs=57.7
Q ss_pred CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (325)
Q Consensus 179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~ 258 (325)
+.-..++-.|+|. ..+++...+.|---|.++++. .+.--+....-..|..-|++. .-++-+.. .|.=.|-+
T Consensus 62 ~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev------~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpk 132 (353)
T COG4257 62 SAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEV------ETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPK 132 (353)
T ss_pred CCccccccCCCCc-eEEecCccccceecCCCCCce------EEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCc
Confidence 4456788889998 888888888888888887742 222223334445566677764 33333222 44445555
Q ss_pred CCCCCCCeeEe----eccCCCeeEEEeCCCCCc
Q 020480 259 TPSVSKPVQSV----VAHQSEVGVSILNASFRL 287 (325)
Q Consensus 259 ~~~~~~~~~~~----~~h~~~v~~i~~~p~~~~ 287 (325)
+.+ +.++ +.-........|++.|.+
T Consensus 133 t~e----vt~f~lp~~~a~~nlet~vfD~~G~l 161 (353)
T COG4257 133 TLE----VTRFPLPLEHADANLETAVFDPWGNL 161 (353)
T ss_pred ccc----eEEeecccccCCCcccceeeCCCccE
Confidence 544 2332 222345777889998885
No 494
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=21.68 E-value=5e+02 Score=22.03 Aligned_cols=125 Identities=13% Similarity=0.131 Sum_probs=67.4
Q ss_pred ceEEEEEeccCCC--eeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC
Q 020480 115 KVQIIQQINHDGE--VNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (325)
Q Consensus 115 ~~~~~~~~~h~~~--v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 190 (325)
.++++..++|... ...+.|..++ .++-+.+.-| .|+.+|+.+ ++......+. ..--.-.++...
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~t--------g~~~~~~~l~-~~~FgEGit~~~-- 99 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLET--------GKVLQSVPLP-PRYFGEGITILG-- 99 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTT--------SSEEEEEE-T-TT--EEEEEEET--
T ss_pred eeEEEEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCC--------CcEEEEEECC-ccccceeEEEEC--
Confidence 3577778888643 3457776666 6777777777 788888887 2221111222 112223333332
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (325)
Q Consensus 191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 261 (325)
..++.-.-.++...+||..+. ..+..+. ....=+.++. ++..++ .......|+++|..+.+
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl------~~~~~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTL------KKIGTFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFK 160 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTT------EEEEEEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-S
T ss_pred CEEEEEEecCCeEEEEccccc------eEEEEEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccc
Confidence 224444456788999999865 3444543 2345566663 454455 44556779999987755
No 495
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=21.57 E-value=39 Score=25.24 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=19.6
Q ss_pred hhhhhhhhhhhhHHHHhhhHhcChhH
Q 020480 6 EEMRGEIEERLINEEYKIWKKNTPFL 31 (325)
Q Consensus 6 ~~~~~~~~~~~~~~~~~iw~~~~~~~ 31 (325)
+|.+++.++..+++|+|=+.++-|+.
T Consensus 87 ~e~d~eieeg~kd~EFrPFIRrLPEF 112 (180)
T COG5249 87 IEDDDEIEEGEKDNEFRPFIRRLPEF 112 (180)
T ss_pred hccccccccccccchhhHHHHcCchh
Confidence 44455566677899999999998875
No 496
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=21.20 E-value=4.7e+02 Score=22.59 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=41.8
Q ss_pred CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc-----eEEEEecCCCCCeEEEEeCCC
Q 020480 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE-----GYGLSWSKFKEGHLLSGSDDA 201 (325)
Q Consensus 127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~p~~~~~l~s~s~dg 201 (325)
-|++|...++| ++|++...-..|.+.+..+ .+.+..+.+.... -...+|-.+ ..++-.+..++
T Consensus 145 HiNsV~~~~~G-~yLiS~R~~~~i~~I~~~t----------G~I~W~lgG~~~~df~~~~~~f~~QHd-ar~~~~~~~~~ 212 (299)
T PF14269_consen 145 HINSVDKDDDG-DYLISSRNTSTIYKIDPST----------GKIIWRLGGKRNSDFTLPATNFSWQHD-ARFLNESNDDG 212 (299)
T ss_pred EeeeeeecCCc-cEEEEecccCEEEEEECCC----------CcEEEEeCCCCCCcccccCCcEeeccC-CEEeccCCCCC
Confidence 46777777777 6899988888888888665 2334555443111 111233222 21333445778
Q ss_pred cEEEEeCC
Q 020480 202 QICLWDIN 209 (325)
Q Consensus 202 ~i~iwd~~ 209 (325)
.|.++|=.
T Consensus 213 ~IslFDN~ 220 (299)
T PF14269_consen 213 TISLFDNA 220 (299)
T ss_pred EEEEEcCC
Confidence 89999863
Done!