Query 020482
Match_columns 325
No_of_seqs 122 out of 179
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09353 DUF1995: Domain of un 100.0 1.3E-49 2.8E-54 362.1 22.4 205 76-319 1-209 (209)
2 PLN02842 nucleotide kinase 100.0 4.4E-45 9.5E-50 369.3 19.3 216 84-324 244-488 (505)
3 PF04413 Glycos_transf_N: 3-De 55.6 40 0.00088 30.3 6.6 121 128-273 34-156 (186)
4 COG0079 HisC Histidinol-phosph 34.8 2.2E+02 0.0048 28.2 8.7 88 125-224 82-173 (356)
5 PF03681 UPF0150: Uncharacteri 31.5 39 0.00084 23.4 2.0 19 79-97 30-48 (48)
6 COG1519 KdtA 3-deoxy-D-manno-o 28.7 2E+02 0.0044 29.6 7.3 98 123-243 61-159 (419)
7 COG4152 ABC-type uncharacteriz 28.7 43 0.00093 32.7 2.4 97 211-322 186-295 (300)
8 PF11619 P53_C: Transcription 28.4 55 0.0012 25.3 2.5 22 290-311 5-26 (71)
9 PF13466 STAS_2: STAS domain 28.4 2.1E+02 0.0047 21.1 5.9 65 82-160 10-74 (80)
10 PHA02737 hypothetical protein; 26.3 1.3E+02 0.0029 23.6 4.3 37 268-307 9-50 (72)
11 PRK13938 phosphoheptose isomer 25.3 5.2E+02 0.011 23.5 11.6 120 78-238 25-148 (196)
12 PF09936 Methyltrn_RNA_4: SAM- 23.4 1.2E+02 0.0026 27.9 4.1 47 210-278 116-162 (185)
13 PF00990 GGDEF: GGDEF domain; 20.7 1.2E+02 0.0027 24.2 3.4 25 77-101 137-161 (161)
No 1
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=1.3e-49 Score=362.06 Aligned_cols=205 Identities=30% Similarity=0.556 Sum_probs=173.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCce--EEEEecCCCCCCCCCCCccccccccchHHHHHHHhhhcCCCCCCceEEEecC
Q 020482 76 FPSDYSELLDQAKMAAELAVKDGMKL--MEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPE 153 (325)
Q Consensus 76 lP~s~~eav~qA~~Av~~AL~dG~~r--leVEfP~l~l~~~pGd~d~~~e~~~~~~la~~~~~~~l~~~~g~~vkv~fPD 153 (325)
||.||+|+++||++|+++||++|.+| +|++||+++. .+++++++|++.| .+.|++++++|||
T Consensus 1 lP~s~~ea~~qA~~Av~~Al~~g~~r~~ve~~fP~l~~--------------~~~~la~~~~~~l--~~~~~~~~~~~pd 64 (209)
T PF09353_consen 1 LPSSLEEAVEQAAEAVQAALEDGDSRQLVELEFPGLNP--------------SNMPLAREFARKL--AASGRRVRVVFPD 64 (209)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEECCCcch--------------hHHHHHHHHHHHH--HhcCceEEEEcCC
Confidence 79999999999999999999999988 5555998722 2699999999998 5588999999999
Q ss_pred hhHHHHHhhhccCCcceeecccCCCcccccccccchhccccccCCCCceEEEEeecCChhcHHHHHHHHHHhhhCCCeeE
Q 020482 154 ANEVKFARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKL 233 (325)
Q Consensus 154 ageaalA~r~~~~g~~~~ld~l~~~~~f~d~g~~~~~~~~~~~~~~d~~~vvv~P~~~~~el~~vE~l~~~a~~~~~rPv 233 (325)
+|++++|+++ |++.++++.+++.. ... ......|+++|+|+|++ .+++++|++|+.. .+||+
T Consensus 65 ~g~~alA~~~-~~~~~~~~~~l~~~---------~~~---~~~~~~~~~~vvv~p~~--~~l~~~e~~~~~~---~~rpv 126 (209)
T PF09353_consen 65 AGEAALARRD-WGDGSFKIASLDDW---------SSS---EDESKFDDILVVVAPSP--QELDDVEKLCEAA---GGRPV 126 (209)
T ss_pred hHHHHHHhcc-ccCCCeEEeeccCc---------ccc---ccccccCCEEEEEECCh--hhHHHHHHHHHhc---CCCeE
Confidence 9999999998 99999888444332 110 00011178999999999 9999999999864 66999
Q ss_pred EEEcCcccccc-CCCCCCcccHHHHHHHhhhcccceEEEEEeeeCCCCceEEEeEeCCCcEEEEEe-CCeEEEEeeecCC
Q 020482 234 IIFNGELDRIR-SGYYPSFFYPKLAALSKTLFPVMETIYYIHNFKGRNGGTLFRCYPGSWKVLKKV-SNKYICLHQQEVM 311 (325)
Q Consensus 234 VllNp~Ldd~~-~g~g~~~F~pk~R~lr~~FLs~fe~vYyL~pl~~~~~GaLfR~YPgpWqV~~~~-~g~y~~v~e~~~R 311 (325)
|||||+|++++ .|+| |. +|++|++|+++||+||||+|+.+...|+||||||||||||+++ +|+|+||+++++|
T Consensus 127 vl~Np~l~~~~~~g~g---~~--~r~~~~~Fl~~fe~vY~l~~l~~~~~gal~r~yP~~Wqv~~~~~~~~y~~v~~~~~r 201 (209)
T PF09353_consen 127 VLLNPQLEDVRSVGFG---FP--GRKLRERFLSSFETVYYLRPLRISGNGALFRCYPGPWQVFREDDDGEYECVAEFEER 201 (209)
T ss_pred EEEecccccCCccccc---cc--cHHHHHHHHhhceEEEEEEeeccCCcEEEEEeCCCCcEEEEEcCCCcEEEEEecccC
Confidence 99999999998 6655 33 5799999999999999999996433599999999999999999 8999999999999
Q ss_pred CCHHHHHh
Q 020482 312 PSLKEVAL 319 (325)
Q Consensus 312 Ps~~Ev~~ 319 (325)
|+++||+.
T Consensus 202 P~~~e~~~ 209 (209)
T PF09353_consen 202 PTYEELEE 209 (209)
T ss_pred CChHHhhC
Confidence 99999974
No 2
>PLN02842 nucleotide kinase
Probab=100.00 E-value=4.4e-45 Score=369.26 Aligned_cols=216 Identities=19% Similarity=0.201 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHcCCceEEEE--ecCCCCCCCCCCCccccccccchHHHHHHHhhhcCCCCCCceEEEecC-hhHHHH-
Q 020482 84 LDQAKMAAELAVKDGMKLMEIE--FPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPE-ANEVKF- 159 (325)
Q Consensus 84 v~qA~~Av~~AL~dG~~rleVE--fP~l~l~~~pGd~d~~~e~~~~~~la~~~~~~~l~~~~g~~vkv~fPD-ageaal- 159 (325)
-++|.+||++|++||++|++|| ||+|+++ +|+|+ +++.++||++|+..| ++.|++||||||| +|+++|
T Consensus 244 ~~~~~~a~~~a~~~g~~r~~~~~~~pel~~~-----~~~~~-~~~~~~l~~~~~~~~--~~~~~~~kv~~~~~~g~~~~~ 315 (505)
T PLN02842 244 YDDVLQATQRAVNDGRTRLKVEINIPELNPE-----MDVYR-IGTLMELVRVLALSF--ADDGKRVKVCVQGSMGEGALA 315 (505)
T ss_pred HHHHHHHHHHHHhCCcceEEEEEecCccccc-----ccccc-chhHHHHHHHHHHHH--hhcCCceEEEecCCcchhHhc
Confidence 4689999999999999999998 9999996 67776 788999999999998 8899999999999 899999
Q ss_pred -------------HhhhccCCcceeecccCCCcccccccccchhccccccCCCCceEEEEeecCCh--hcHHHHHHHHHH
Q 020482 160 -------------ARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNV--NEMLVVEELYKE 224 (325)
Q Consensus 160 -------------A~r~~~~g~~~~ld~l~~~~~f~d~g~~~~~~~~~~~~~~d~~~vvv~P~~~~--~el~~vE~l~~~ 224 (325)
|+++ |++..++= .|-.+|.++ ++.++++|++||+|+|++.| .++++||+||+.
T Consensus 316 ~~~~~~~~~~~~~~~~d-w~~~~~~~-------~~~~~~~~~----~~~~~~~d~~~i~v~P~~~v~~~~~~~~e~~~~~ 383 (505)
T PLN02842 316 GMPLQLAGTRKILEFMD-WGDYGAKG-------TFVKIGAIG----AKEVDEEDDMFILVAPQNAVGNCIIDDLQAMTTA 383 (505)
T ss_pred cCccccccchhhhhhcc-cccccccc-------cceeecccc----cCCCCCCCcEEEEEcCCccccccchHHHHHHHHH
Confidence 9998 99988731 111122222 25568899999999999843 399999999996
Q ss_pred hhhCCCeeEEEEcCccccccCCCCCCcccHHHHHHHhhhcccceEEEEEeeeCCC-----CceEEEeEeCCCcEEEEEeC
Q 020482 225 AVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYIHNFKGR-----NGGTLFRCYPGSWKVLKKVS 299 (325)
Q Consensus 225 a~~~~~rPvVllNp~Ldd~~~g~g~~~F~pk~R~lr~~FLs~fe~vYyL~pl~~~-----~~GaLfR~YPgpWqV~~~~~ 299 (325)
+ ++|||||+||+|+|+.+.-| +++-.+|++|++|+++||+||||+|+... .+|||+|+||++||||++++
T Consensus 384 ~---~~rpvillnp~LeD~~~~vG--ig~~~~R~~R~~f~~t~~~~Y~~~~l~~~~~~~~~~gal~~~yp~~w~l~~~~~ 458 (505)
T PLN02842 384 A---GKRPVILVNPRLKDLPGSSG--IMQTMGREQRLEYAASFENCYSFRLLYYAGTQYPIMGALRMSYPYRYELYKRVD 458 (505)
T ss_pred h---CCCeEEEECCcccccccccc--hhHHHHHHHHHHHHHHhhheeEEEeccccccccccceeeeecCCCCeeEEEecC
Confidence 4 99999999999999742112 11123999999999999999999998542 25999999999999998753
Q ss_pred -----CeEEEEeeecCCCCHHHHHhhhCCC
Q 020482 300 -----NKYICLHQQEVMPSLKEVALDILPS 324 (325)
Q Consensus 300 -----g~y~~v~e~~~RPs~~Ev~~~il~~ 324 (325)
++|+++++|++||+.+||+..|+|.
T Consensus 459 ~~~~~~~y~~~~~~~~~P~~e~i~~~~~~~ 488 (505)
T PLN02842 459 EENGKEKYIILATFSERPTPDEINDAFSGR 488 (505)
T ss_pred ccccCcceEEeeecCCCCCHHHHHHHhCCC
Confidence 4999999999999999999999984
No 3
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=55.60 E-value=40 Score=30.28 Aligned_cols=121 Identities=14% Similarity=0.160 Sum_probs=48.2
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEecChhHHHHHhhhccCCcceeecccCCCccccccc-ccchhccccccCCCCceEEEE
Q 020482 128 MRLICEFCDLFVTPEKVTRTRIFFPEANEVKFARKSVFEGASFKLDYLTKPSFFEDFG-FTEKVKMADRVKLEDELFLVA 206 (325)
Q Consensus 128 ~~la~~~~~~~l~~~~g~~vkv~fPDageaalA~r~~~~g~~~~ld~l~~~~~f~d~g-~~~~~~~~~~~~~~d~~~vvv 206 (325)
...+..+++.|.....+.++-+-+--....+.|++. +++ ...+.++.- |+- ...+ .-+.+++ +++|++
T Consensus 34 ~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~-~~~-~v~~~~~P~-----D~~~~~~r--fl~~~~P--~~~i~~ 102 (186)
T PF04413_consen 34 VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL-LPD-RVDVQYLPL-----DFPWAVRR--FLDHWRP--DLLIWV 102 (186)
T ss_dssp HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG--GG-G-SEEE--------SSHHHHHH--HHHHH----SEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh-CCC-CeEEEEeCc-----cCHHHHHH--HHHHhCC--CEEEEE
Confidence 444555666653222466666655555556666664 444 111212111 111 1111 1245666 566654
Q ss_pred eecCChhcHHHHHHHHHHhhhCCCeeEEEEcCcccccc-CCCCCCcccHHHHHHHhhhcccceEEEEE
Q 020482 207 YPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIR-SGYYPSFFYPKLAALSKTLFPVMETIYYI 273 (325)
Q Consensus 207 ~P~~~~~el~~vE~l~~~a~~~~~rPvVllNp~Ldd~~-~g~g~~~F~pk~R~lr~~FLs~fe~vYyL 273 (325)
.. .-++.+-..+.+ .+-|++|+|+++.+-. .+|. +.+.+.+..++.|..++--
T Consensus 103 --Et--ElWPnll~~a~~----~~ip~~LvNarls~~s~~~~~------~~~~~~r~~l~~f~~i~aq 156 (186)
T PF04413_consen 103 --ET--ELWPNLLREAKR----RGIPVVLVNARLSERSFRRYR------RFPFLFRPLLSRFDRILAQ 156 (186)
T ss_dssp --S------HHHHHH---------S-EEEEEE--------------------HHHHHHGGG-SEEEES
T ss_pred --cc--ccCHHHHHHHhh----cCCCEEEEeeeeccccchhhh------hhHHHHHHHHHhCCEEEEC
Confidence 33 556665544442 5789999999998753 2333 3446777888999888864
No 4
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=34.82 E-value=2.2e+02 Score=28.25 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=52.9
Q ss_pred ccchHHHHHHHhhhcCCCCCCceEEEecChhHHHHHhhhccCCcce-eecccCCCcccccccccchhccccccCCCCceE
Q 020482 125 TGSMRLICEFCDLFVTPEKVTRTRIFFPEANEVKFARKSVFEGASF-KLDYLTKPSFFEDFGFTEKVKMADRVKLEDELF 203 (325)
Q Consensus 125 ~~~~~la~~~~~~~l~~~~g~~vkv~fPDageaalA~r~~~~g~~~-~ld~l~~~~~f~d~g~~~~~~~~~~~~~~d~~~ 203 (325)
+++.++...+++.| ...|.++-+..|--++.+.+-+. .|... .+... .+-.|+.. +...+.++-+++
T Consensus 82 nGsde~i~~l~~~~--~~~gd~vl~~~Ptf~~Y~~~a~~--~g~~~~~v~~~---~~~~d~~~-----~~~~~~~~~~lv 149 (356)
T COG0079 82 NGSDELIELLVRAF--VEPGDTVLIPEPTFSMYEIAAQL--AGAEVVKVPLK---EFRLDLDA-----ILAAIRDKTKLV 149 (356)
T ss_pred CChHHHHHHHHHHh--hcCCCEEEEcCCChHHHHHHHHh--cCCeEEEeccc---ccccCHHH-----HHHhhhcCCCEE
Confidence 34577777888888 45677788888888888887764 34333 33111 01111111 122233345678
Q ss_pred EEEeecCChh---cHHHHHHHHHH
Q 020482 204 LVAYPYFNVN---EMLVVEELYKE 224 (325)
Q Consensus 204 vvv~P~~~~~---el~~vE~l~~~ 224 (325)
+++.|++.+. ..++++++.+.
T Consensus 150 ~i~nPNNPTG~~~~~~~l~~l~~~ 173 (356)
T COG0079 150 FLCNPNNPTGTLLPREELRALLEA 173 (356)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHh
Confidence 8888998763 67777777764
No 5
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=31.48 E-value=39 Score=23.38 Aligned_cols=19 Identities=42% Similarity=0.466 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q 020482 79 DYSELLDQAKMAAELAVKD 97 (325)
Q Consensus 79 s~~eav~qA~~Av~~AL~d 97 (325)
|++||++.+++|+...|.+
T Consensus 30 t~eea~~~~~eal~~~le~ 48 (48)
T PF03681_consen 30 TLEEALENAKEALELWLED 48 (48)
T ss_dssp SHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHHHHHHhhC
Confidence 8999999999999987653
No 6
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=28.72 E-value=2e+02 Score=29.64 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=53.5
Q ss_pred ccccchHHHHHHHhhhcCCCCCCceEE-EecChhHHHHHhhhccCCcceeecccCCCcccccccccchhccccccCCCCc
Q 020482 123 EMTGSMRLICEFCDLFVTPEKVTRTRI-FFPEANEVKFARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDE 201 (325)
Q Consensus 123 e~~~~~~la~~~~~~~l~~~~g~~vkv-~fPDageaalA~r~~~~g~~~~ld~l~~~~~f~d~g~~~~~~~~~~~~~~d~ 201 (325)
|.++..+|++++.+.+ -+.++-+ .+-..| ++.|++- |++. ....||.-...+ ...+. -+.|++ +
T Consensus 61 Ev~a~~pLv~~l~~~~----P~~~ilvTt~T~Tg-~e~a~~~-~~~~-v~h~YlP~D~~~----~v~rF--l~~~~P--~ 125 (419)
T COG1519 61 EVLAALPLVRALRERF----PDLRILVTTMTPTG-AERAAAL-FGDS-VIHQYLPLDLPI----AVRRF--LRKWRP--K 125 (419)
T ss_pred HHHHHHHHHHHHHHhC----CCCCEEEEecCccH-HHHHHHH-cCCC-eEEEecCcCchH----HHHHH--HHhcCC--C
Confidence 4456788888887775 2333333 223333 5666664 7765 333344331111 11110 244555 4
Q ss_pred eEEEEeecCChhcHHHHHHHHHHhhhCCCeeEEEEcCccccc
Q 020482 202 LFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRI 243 (325)
Q Consensus 202 ~~vvv~P~~~~~el~~vE~l~~~a~~~~~rPvVllNp~Ldd~ 243 (325)
+.|++ .. +-++.+-.-+. ..+-|+|++|+||.+-
T Consensus 126 l~Ii~--Et--ElWPnli~e~~----~~~~p~~LvNaRLS~r 159 (419)
T COG1519 126 LLIIM--ET--ELWPNLINELK----RRGIPLVLVNARLSDR 159 (419)
T ss_pred EEEEE--ec--cccHHHHHHHH----HcCCCEEEEeeeechh
Confidence 55554 33 55666544444 2688999999999874
No 7
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=28.69 E-value=43 Score=32.66 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=58.5
Q ss_pred ChhcHHHHHHHHHHhhhCCCeeEEEEcCccccccCCCCCCcccHHHHHHHhhhcccceEEEEEeeeCCCCceEEEeE--e
Q 020482 211 NVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYIHNFKGRNGGTLFRC--Y 288 (325)
Q Consensus 211 ~~~el~~vE~l~~~a~~~~~rPvVllNp~Ldd~~~g~g~~~F~pk~R~lr~~FLs~fe~vYyL~pl~~~~~GaLfR~--Y 288 (325)
|+--|+.||+||+..+ =-.+==.++++.+++++..||. ++-++.+=.+.+-|.+++ |.+--. -
T Consensus 186 SsH~Me~vEeLCD~ll-mL~kG~~V~~G~v~~ir~~~Gk----------k~~~ies~~s~eeL~~ip----gi~~~~~~~ 250 (300)
T COG4152 186 SSHRMEHVEELCDRLL-MLKKGQTVLYGTVEDIRRSFGK----------KRLVIESDLSLEELANIP----GILKITETK 250 (300)
T ss_pred ecchHHHHHHHhhhhh-eecCCceEEeccHHHHHHhcCC----------ceEEEeccCchHHHhcCC----Cceeeeecc
Confidence 4467999999998642 1222233568999998888881 233444444455566666 443333 2
Q ss_pred CCCcEEEEEeC-C---------eEEEEeeecCC-CCHHHHHhhhC
Q 020482 289 PGSWKVLKKVS-N---------KYICLHQQEVM-PSLKEVALDIL 322 (325)
Q Consensus 289 PgpWqV~~~~~-g---------~y~~v~e~~~R-Ps~~Ev~~~il 322 (325)
-|-|++-.+.. + +=-.|..|+.+ ||++|+-.+-.
T Consensus 251 ~G~~~i~ie~e~~a~~ifq~~a~~g~i~~Fe~~~PsL~diFi~~~ 295 (300)
T COG4152 251 DGSWRIQIENETVAREIFQEVARDGYIQRFELQEPSLHDIFIEKV 295 (300)
T ss_pred CCceEeecccchHHHHHHHHHhccceeEEEeecCCCHHHHHHHHh
Confidence 47788555441 1 22236678877 99999866543
No 8
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=28.41 E-value=55 Score=25.34 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=17.4
Q ss_pred CCcEEEEEeCCeEEEEeeecCC
Q 020482 290 GSWKVLKKVSNKYICLHQQEVM 311 (325)
Q Consensus 290 gpWqV~~~~~g~y~~v~e~~~R 311 (325)
..|||=+..+|.|+++-+.+.+
T Consensus 5 ~dW~Vsrt~dGdYrL~itcp~K 26 (71)
T PF11619_consen 5 ADWEVSRTLDGDYRLVITCPKK 26 (71)
T ss_dssp -S-EEEEETTTCEEEEEEESSH
T ss_pred ccceeeeccCCceEEEEecCcH
Confidence 4799999999999999887654
No 9
>PF13466 STAS_2: STAS domain
Probab=28.35 E-value=2.1e+02 Score=21.10 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEecCCCCCCCCCCCccccccccchHHHHHHHhhhcCCCCCCceEEEecChhHHHHH
Q 020482 82 ELLDQAKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPEANEVKFA 160 (325)
Q Consensus 82 eav~qA~~Av~~AL~dG~~rleVEfP~l~l~~~pGd~d~~~e~~~~~~la~~~~~~~l~~~~g~~vkv~fPDageaalA 160 (325)
+.+.+..++...++++| ..+.|+|-.++- ++. +.+++...+.+.. ...|.++.+.-+.+.-..+.
T Consensus 10 ~~~~~l~~~l~~~~~~~-~~v~lDls~v~~----------iDs-agl~lL~~~~~~~--~~~g~~~~l~~~~~~~~~ll 74 (80)
T PF13466_consen 10 ATAPELRQALQALLASG-RPVVLDLSGVEF----------IDS-AGLQLLLAAARRA--RARGRQLRLTGPSPALRRLL 74 (80)
T ss_pred HHHHHHHHHHHHHHcCC-CeEEEECCCCCe----------ecH-HHHHHHHHHHHHH--HHCCCeEEEEcCCHHHHHHH
Confidence 44567788888888888 889999888732 111 2477777777665 45788888887776554443
No 10
>PHA02737 hypothetical protein; Provisional
Probab=26.34 E-value=1.3e+02 Score=23.57 Aligned_cols=37 Identities=19% Similarity=0.488 Sum_probs=28.0
Q ss_pred eEEEEEe-----eeCCCCceEEEeEeCCCcEEEEEeCCeEEEEee
Q 020482 268 ETIYYIH-----NFKGRNGGTLFRCYPGSWKVLKKVSNKYICLHQ 307 (325)
Q Consensus 268 e~vYyL~-----pl~~~~~GaLfR~YPgpWqV~~~~~g~y~~v~e 307 (325)
+..||.. |+.+ +--|-|-|..|-++++..++..+|+=
T Consensus 9 ~~~f~VVqF~elpf~g---iddYvCVP~sWIi~r~~td~kv~VaY 50 (72)
T PHA02737 9 KRAFHVAKFAELHFDG---IDDYVCVPDSWIIRRKATDQKSIVAY 50 (72)
T ss_pred ceeEEEEEEEecCcCC---CcCEEEeCceeEEEEeccCceEEEEc
Confidence 3456643 4554 77889999999999998888787763
No 11
>PRK13938 phosphoheptose isomerase; Provisional
Probab=25.34 E-value=5.2e+02 Score=23.49 Aligned_cols=120 Identities=8% Similarity=0.055 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEEecCCCCCCCCCCCccccccccchHHHHHHHhhhcC----CCCCCceEEEecC
Q 020482 78 SDYSELLDQAKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVT----PEKVTRTRIFFPE 153 (325)
Q Consensus 78 ~s~~eav~qA~~Av~~AL~dG~~rleVEfP~l~l~~~pGd~d~~~e~~~~~~la~~~~~~~l~----~~~g~~vkv~fPD 153 (325)
..+.+.+.++.+.+..++..|.+.+-+ + .|++-.+|..|+..|+. ....-++..++.|
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G---------------~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~ 86 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---G---------------NGGSAADAQHFAAELTGHLIFDRPPLGAEALHAN 86 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---e---------------CcHHHHHHHHHHHHcCCCccCCcCccceEEEeCC
Confidence 367888899999999999988554322 1 23457788888887631 0112234455555
Q ss_pred hhHHHHHhhhccCCcceeecccCCCcccccccccchhccccccCCCCceEEEEeecCChhcHHHHHHHHHHhhhCCCeeE
Q 020482 154 ANEVKFARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKL 233 (325)
Q Consensus 154 ageaalA~r~~~~g~~~~ld~l~~~~~f~d~g~~~~~~~~~~~~~~d~~~vvv~P~~~~~el~~vE~l~~~a~~~~~rPv 233 (325)
....-..-.+ -.+. ..+ .+ . .......++++|++.-..++.++...-+.+++ .+-++
T Consensus 87 ~~~~~a~~nd----~~~~----------~~~---~~-~-~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~----~G~~v 143 (196)
T PRK13938 87 SSHLTAVAND----YDYD----------TVF---AR-A-LEGSARPGDTLFAISTSGNSMSVLRAAKTARE----LGVTV 143 (196)
T ss_pred hHHHHHhhcc----ccHH----------HHH---HH-H-HHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHH----CCCEE
Confidence 4221111111 0000 000 00 0 01223456788888776666666555555654 45666
Q ss_pred EEEcC
Q 020482 234 IIFNG 238 (325)
Q Consensus 234 VllNp 238 (325)
|.+=.
T Consensus 144 I~iT~ 148 (196)
T PRK13938 144 VAMTG 148 (196)
T ss_pred EEEeC
Confidence 66644
No 12
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=23.36 E-value=1.2e+02 Score=27.92 Aligned_cols=47 Identities=13% Similarity=0.332 Sum_probs=25.6
Q ss_pred CChhcHHHHHHHHHHhhhCCCeeEEEEcCccccccCCCCCCcccHHHHHHHhhhcccceEEEEEeeeCC
Q 020482 210 FNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYIHNFKG 278 (325)
Q Consensus 210 ~~~~el~~vE~l~~~a~~~~~rPvVllNp~Ldd~~~g~g~~~F~pk~R~lr~~FLs~fe~vYyL~pl~~ 278 (325)
+|+..+.+++++..+ .++|++|+ .+.|+| |.++++.++. |.|.|+.|
T Consensus 116 ~~~is~~~lr~~l~~----~~~P~Lll------FGTGwG----------L~~ev~~~~D--~iLePI~g 162 (185)
T PF09936_consen 116 PNTISYAELRRMLEE----EDRPVLLL------FGTGWG----------LAPEVMEQCD--YILEPIRG 162 (185)
T ss_dssp SS-B-HHHHHHHHHH------S-EEEE------E--TT-------------HHHHTT-S--EEB--TTT
T ss_pred CCCcCHHHHHHHHhc----cCCeEEEE------ecCCCC----------CCHHHHHhcC--eeEccccc
Confidence 444788999988754 68898876 357888 5567777766 78899986
No 13
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=20.65 E-value=1.2e+02 Score=24.22 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCce
Q 020482 77 PSDYSELLDQAKMAAELAVKDGMKL 101 (325)
Q Consensus 77 P~s~~eav~qA~~Av~~AL~dG~~r 101 (325)
..+++++++.|..|+..|-+.|..+
T Consensus 137 ~~~~~~ll~~a~~al~~ak~~g~n~ 161 (161)
T PF00990_consen 137 GQDADELLKKADQALQEAKEQGRNQ 161 (161)
T ss_dssp TSSHHHHHHHHHHHHHHHHHTTSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4599999999999999999999754
Done!