Query 020482
Match_columns 325
No_of_seqs 122 out of 179
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rp4_A Transcription factor P5 52.6 6.3 0.00021 29.8 1.8 24 288-311 8-31 (76)
2 1wey_A Calcipressin 1; structu 21.7 58 0.002 26.0 2.8 27 144-171 46-72 (104)
3 3icl_A EAL/ggdef domain protei 20.4 1E+02 0.0034 24.3 4.1 28 78-105 133-160 (171)
4 3vqt_A RF-3, peptide chain rel 20.1 97 0.0033 31.0 4.8 93 165-272 97-189 (548)
5 3hhl_A RPA0582; alpha-beta-bar 19.4 41 0.0014 28.0 1.5 20 216-238 11-30 (143)
6 3ign_A Diguanylate cyclase; gg 17.6 1.3E+02 0.0045 23.8 4.3 29 77-105 141-169 (177)
7 3qyy_A Response regulator; C-D 17.0 1.3E+02 0.0044 23.7 4.0 27 78-104 139-165 (167)
8 3kwr_A Putative RNA-binding pr 17.0 87 0.003 24.5 2.8 21 79-99 38-58 (97)
9 3nbm_A PTS system, lactose-spe 16.5 80 0.0027 24.9 2.5 33 203-240 56-88 (108)
10 2yzt_A Putative uncharacterize 14.6 94 0.0032 22.1 2.3 19 79-97 32-50 (67)
No 1
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=52.64 E-value=6.3 Score=29.84 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.6
Q ss_pred eCCCcEEEEEeCCeEEEEeeecCC
Q 020482 288 YPGSWKVLKKVSNKYICLHQQEVM 311 (325)
Q Consensus 288 YPgpWqV~~~~~g~y~~v~e~~~R 311 (325)
-|..|+|=+..+|.|+++-+.+.+
T Consensus 8 ~p~dW~VsRt~dGdYrL~itcpkK 31 (76)
T 2rp4_A 8 SAAEWNVSRTPDGDYRLAITCPNK 31 (76)
T ss_dssp SSCCCEEECCTTTBEEEEEEESCH
T ss_pred CCccceeeeccCCceEEEEEeCcH
Confidence 489999999889999999877653
No 2
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.74 E-value=58 Score=26.04 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCceEEEecChhHHHHHhhhccCCccee
Q 020482 144 VTRTRIFFPEANEVKFARKSVFEGASFK 171 (325)
Q Consensus 144 g~~vkv~fPDageaalA~r~~~~g~~~~ 171 (325)
=.|++|.|-++-+|+.||.. |++..|.
T Consensus 46 FRRirv~F~~~~~A~~AR~~-Lh~~~f~ 72 (104)
T 1wey_A 46 FKRVRINFSNPLSAADARLR-LHKTEFL 72 (104)
T ss_dssp TTEEEEECSSTTHHHHHHHT-STTSEET
T ss_pred ceEEEEEeCChHHHHHHHHH-hccceec
Confidence 46899999999999999987 8776653
No 3
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=20.36 E-value=1e+02 Score=24.34 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEE
Q 020482 78 SDYSELLDQAKMAAELAVKDGMKLMEIE 105 (325)
Q Consensus 78 ~s~~eav~qA~~Av~~AL~dG~~rleVE 105 (325)
.+.++++.+|..|+..|-..|..++.+=
T Consensus 133 ~~~~~ll~~A~~Al~~ak~~g~~~~~~~ 160 (171)
T 3icl_A 133 ETMEQLLRNADTAMYHAKSRGKNNYQFF 160 (171)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCSSEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4799999999999999999999887763
No 4
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=20.15 E-value=97 Score=30.97 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=57.2
Q ss_pred cCCcceeecccCCCcccccccccchhccccccCCCCceEEEEeecCChhcHHHHHHHHHHhhhCCCeeEEEEcCcccccc
Q 020482 165 FEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIR 244 (325)
Q Consensus 165 ~~g~~~~ld~l~~~~~f~d~g~~~~~~~~~~~~~~d~~~vvv~P~~~~~el~~vE~l~~~a~~~~~rPvVllNp~Ldd~~ 244 (325)
|.+..++| ++.| .+.+|.+.+ +..+..-|.+++||-... .-..+.|.+.+.+. ..+.|.|+|=.++|..+
T Consensus 97 ~~~~~iNl--IDTP---GHvDF~~Ev--~raL~~~DgAvlVvda~~--GV~~qT~~v~~~a~-~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 97 YRDRVVNL--LDTP---GHQDFSEDT--YRVLTAVDSALVVIDAAK--GVEAQTRKLMDVCR-MRATPVMTFVNKMDREA 166 (548)
T ss_dssp ETTEEEEE--ECCC---CGGGCSHHH--HHHHHSCSEEEEEEETTT--BSCHHHHHHHHHHH-HTTCCEEEEEECTTSCC
T ss_pred ECCEEEEE--EeCC---CcHHHHHHH--HHHHHhcCceEEEeecCC--CcccccHHHHHHHH-HhCCceEEEEecccchh
Confidence 77777775 5666 455555443 233445567777775554 33455566655432 36788888888999876
Q ss_pred CCCCCCcccHHHHHHHhhhcccceEEEE
Q 020482 245 SGYYPSFFYPKLAALSKTLFPVMETIYY 272 (325)
Q Consensus 245 ~g~g~~~F~pk~R~lr~~FLs~fe~vYy 272 (325)
.++. --..++++.|-....++.+
T Consensus 167 ad~~-----~~~~~i~~~l~~~~~p~~~ 189 (548)
T 3vqt_A 167 LHPL-----DVMADIEQHLQIECAPMTW 189 (548)
T ss_dssp CCHH-----HHHHHHHHHHTSEEEESEE
T ss_pred cchh-----HhhhhhhhhcCCceEeEEe
Confidence 6653 1255777777655544444
No 5
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=19.35 E-value=41 Score=28.02 Aligned_cols=20 Identities=10% Similarity=0.085 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhCCCeeEEEEcC
Q 020482 216 LVVEELYKEAVFNTAWKLIIFNG 238 (325)
Q Consensus 216 ~~vE~l~~~a~~~~~rPvVllNp 238 (325)
++++++.+. ..++||+|+|.
T Consensus 11 ~~~~~~~~~---~~~~pv~MlNL 30 (143)
T 3hhl_A 11 EVFAQFRAN---DREGPIHMLNL 30 (143)
T ss_dssp HHHHHHHHC---CCSSCEEEEEE
T ss_pred HHHHHHHhC---CCCCCEEEEeh
Confidence 566766543 58899999996
No 6
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=17.60 E-value=1.3e+02 Score=23.80 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCceEEEE
Q 020482 77 PSDYSELLDQAKMAAELAVKDGMKLMEIE 105 (325)
Q Consensus 77 P~s~~eav~qA~~Av~~AL~dG~~rleVE 105 (325)
+.+.++++++|..|+..|-..|..++..-
T Consensus 141 ~~~~~~ll~~A~~Al~~Ak~~g~n~~~~~ 169 (177)
T 3ign_A 141 PENYMQWMQKADEALYKAKESGRNKVVVS 169 (177)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTSSSEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcEeec
Confidence 35899999999999999999998887654
No 7
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=17.03 E-value=1.3e+02 Score=23.69 Aligned_cols=27 Identities=26% Similarity=0.126 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEE
Q 020482 78 SDYSELLDQAKMAAELAVKDGMKLMEI 104 (325)
Q Consensus 78 ~s~~eav~qA~~Av~~AL~dG~~rleV 104 (325)
.+.++++.+|..|+..|-..|..++.+
T Consensus 139 ~~~~~ll~~A~~Al~~Ak~~g~~~~~~ 165 (167)
T 3qyy_A 139 IDATELYRRADAAMYRAKFSGGRRLVR 165 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCceec
Confidence 589999999999999999999887654
No 8
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=16.96 E-value=87 Score=24.46 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCC
Q 020482 79 DYSELLDQAKMAAELAVKDGM 99 (325)
Q Consensus 79 s~~eav~qA~~Av~~AL~dG~ 99 (325)
|++||++.|++|+...|.+=.
T Consensus 38 T~eEAl~nA~EAL~~~Le~~~ 58 (97)
T 3kwr_A 38 SVQVAADNAANALAIALFEQS 58 (97)
T ss_dssp SHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHhCc
Confidence 899999999999999999753
No 9
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=16.45 E-value=80 Score=24.91 Aligned_cols=33 Identities=6% Similarity=0.029 Sum_probs=24.8
Q ss_pred EEEEeecCChhcHHHHHHHHHHhhhCCCeeEEEEcCcc
Q 020482 203 FLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGEL 240 (325)
Q Consensus 203 ~vvv~P~~~~~el~~vE~l~~~a~~~~~rPvVllNp~L 240 (325)
+|++.||. ...++++++.++. .+.||.++|++-
T Consensus 56 vvLLgPQV-~y~~~~ik~~~~~----~~ipV~vI~~~~ 88 (108)
T 3nbm_A 56 LIILAPQV-RSYYREMKVDAER----LGIQIVATRGME 88 (108)
T ss_dssp EEEECGGG-GGGHHHHHHHHTT----TTCEEEECCHHH
T ss_pred EEEEChHH-HHHHHHHHHHhhh----cCCcEEEeCHHH
Confidence 46668886 3478889888763 689999999853
No 10
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=14.64 E-value=94 Score=22.10 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q 020482 79 DYSELLDQAKMAAELAVKD 97 (325)
Q Consensus 79 s~~eav~qA~~Av~~AL~d 97 (325)
|++||+..|++|+...|.+
T Consensus 32 T~eEa~~~~~eAi~~~le~ 50 (67)
T 2yzt_A 32 SFEELLRRLQEAIAVSLEE 50 (67)
T ss_dssp SHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999998
Done!