Query 020482
Match_columns 325
No_of_seqs 122 out of 179
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 03:38:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020482.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020482hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w25a3 d.58.29.2 (A:294-455) 30.1 21 0.0015 26.6 3.8 25 78-102 132-156 (162)
2 d2bv3a2 c.37.1.8 (A:7-282) Elo 25.7 40 0.0029 28.8 5.2 93 165-272 68-160 (276)
3 d1lu4a_ c.47.1.10 (A:) Soluble 23.9 44 0.0032 24.2 4.6 88 213-321 41-131 (134)
4 d1xrga_ d.79.1.1 (A:) Purine r 21.0 70 0.0051 23.3 5.3 37 62-98 29-65 (125)
5 d1byra_ d.136.1.1 (A:) Nucleas 17.8 1E+02 0.0076 22.3 5.7 50 87-155 14-63 (152)
6 d2dsya1 d.304.1.2 (A:3-82) Hyp 16.9 45 0.0032 23.3 3.0 19 79-97 43-61 (80)
7 d1qaha_ d.79.1.1 (A:) 14.5 kda 16.2 74 0.0054 23.3 4.3 25 73-97 43-67 (132)
8 d1u0la2 c.37.1.8 (A:69-293) Pr 13.3 98 0.0072 25.5 4.7 39 197-238 9-50 (225)
9 d2dy1a2 c.37.1.8 (A:8-274) Elo 13.3 70 0.0051 26.9 3.8 64 198-271 90-153 (267)
10 d1t9ha2 c.37.1.8 (A:68-298) Pr 11.6 1.4E+02 0.01 24.5 5.2 41 197-238 9-50 (231)
No 1
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=30.12 E-value=21 Score=26.63 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceE
Q 020482 78 SDYSELLDQAKMAAELAVKDGMKLM 102 (325)
Q Consensus 78 ~s~~eav~qA~~Av~~AL~dG~~rl 102 (325)
.++++++++|-.|+..|-+.|+.|+
T Consensus 132 ~~~~~ll~~A~~AL~~AK~~G~n~v 156 (162)
T d1w25a3 132 DTPEALLKRADEGVYQAKASGRNAV 156 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeE
Confidence 5899999999999999999999876
No 2
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}
Probab=25.69 E-value=40 Score=28.79 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=54.7
Q ss_pred cCCcceeecccCCCcccccccccchhccccccCCCCceEEEEeecCChhcHHHHHHHHHHhhhCCCeeEEEEcCcccccc
Q 020482 165 FEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIR 244 (325)
Q Consensus 165 ~~g~~~~ld~l~~~~~f~d~g~~~~~~~~~~~~~~d~~~vvv~P~~~~~el~~vE~l~~~a~~~~~rPvVllNp~Ldd~~ 244 (325)
|.+..+++ ++.| .+.+|.+.. ...+...|-++|||-....+ -.+.+++.+.+ ...+.|.|+|=.+||+.+
T Consensus 68 ~~~~~~n~--iDtP---G~~dF~~e~--~~~l~~~D~avlVvda~~Gv--~~~T~~~w~~a-~~~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 68 WKDHRINI--IDAP---GHVDFTIEV--ERSMRVLDGAIVVFDSSQGV--EPQSETVWRQA-EKYKVPRIAFANKMDKTG 137 (276)
T ss_dssp ETTEEEEE--ECCC---SSSSCSTTH--HHHHHHCCEEEEEEETTTSS--CHHHHHHHHHH-HTTTCCEEEEEECTTSTT
T ss_pred cCCeEEEE--ecCC---chhhhHHHH--HHHHHhhhheEEeccccCCc--chhHHHHHHHH-HHcCCCEEEEEecccccc
Confidence 77777765 4444 222332221 11123345677777666533 34555555533 247889999999999987
Q ss_pred CCCCCCcccHHHHHHHhhhcccceEEEE
Q 020482 245 SGYYPSFFYPKLAALSKTLFPVMETIYY 272 (325)
Q Consensus 245 ~g~g~~~F~pk~R~lr~~FLs~fe~vYy 272 (325)
.+|- --..+++++|=...-++.+
T Consensus 138 ad~~-----~~l~ei~~~l~~~~vp~~~ 160 (276)
T d2bv3a2 138 ADLW-----LVIRTMQERLGARPVVMQL 160 (276)
T ss_dssp CCHH-----HHHHHHHHTTCCCEEECEE
T ss_pred cccc-----hhHHHHHHHhCCCeEEEEe
Confidence 7764 2256788887666666554
No 3
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.88 E-value=44 Score=24.24 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=51.6
Q ss_pred hcHHHHHHHHHHhhhCCCeeEEEEcCccccccCCCCCCcccHHHHHHHhhhcccceEEEEEeeeCCCCceEEEeEe---C
Q 020482 213 NEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYIHNFKGRNGGTLFRCY---P 289 (325)
Q Consensus 213 ~el~~vE~l~~~a~~~~~rPvVllNp~Ldd~~~g~g~~~F~pk~R~lr~~FLs~fe~vYyL~pl~~~~~GaLfR~Y---P 289 (325)
.+++.+++++++ ..+-.+|.+|..=+ . ..-.+|+.++...|-+..=. .+.+.+.| .
T Consensus 41 ~~~p~l~~~~~~---~~~v~~v~v~~~~~-----~----------~~~~~~~~~~~~~~p~~~d~---~~~~~~~~~v~~ 99 (134)
T d1lu4a_ 41 AEAPSLSQVAAA---NPAVTFVGIATRAD-----V----------GAMQSFVSKYNLNFTNLNDA---DGVIWARYNVPW 99 (134)
T ss_dssp HHHHHHHHHHHH---CTTSEEEEEECSSC-----H----------HHHHHHHHHHTCCSEEEECT---TSHHHHHTTCCS
T ss_pred ecchhHHHHhhh---hccccccccccccc-----h----------hhhhhhhhhhccccceeeCc---hHHHHHHcCCCc
Confidence 589999999874 35677888876311 0 12234455444444332111 13333333 3
Q ss_pred CCcEEEEEeCCeEEEEeeecCCCCHHHHHhhh
Q 020482 290 GSWKVLKKVSNKYICLHQQEVMPSLKEVALDI 321 (325)
Q Consensus 290 gpWqV~~~~~g~y~~v~e~~~RPs~~Ev~~~i 321 (325)
=|.-++...+|.-+.+.....+.+.+++...|
T Consensus 100 ~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l 131 (134)
T d1lu4a_ 100 QPAFVFYRADGTSTFVNNPTAAMSQDELSGRV 131 (134)
T ss_dssp SSEEEEECTTSCEEEECCSSSCCCHHHHHHHH
T ss_pred CCEEEEEeCCCeEEEEeccCCCCCHHHHHHHH
Confidence 34555555578877787777788999998765
No 4
>d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]}
Probab=20.96 E-value=70 Score=23.30 Aligned_cols=37 Identities=8% Similarity=-0.086 Sum_probs=27.4
Q ss_pred ccCCCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 020482 62 VSSDGNNSINVDVPFPSDYSELLDQAKMAAELAVKDG 98 (325)
Q Consensus 62 ~~~~~~~~~~~~~~lP~s~~eav~qA~~Av~~AL~dG 98 (325)
+||............|.|.++..+||-+-+++.|++-
T Consensus 29 vSGq~~~~~~~~~~~~~d~~~Q~~~~l~ni~~~L~~a 65 (125)
T d1xrga_ 29 TSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAA 65 (125)
T ss_dssp ECCBCCBCTTTSSBCSSSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeecccccceeecCchhHHHHHHHHHHHHHHHHc
Confidence 4555433344445578999999999999999998874
No 5
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}
Probab=17.82 E-value=1e+02 Score=22.28 Aligned_cols=50 Identities=8% Similarity=0.049 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCceEEEEecCCCCCCCCCCCccccccccchHHHHHHHhhhcCCCCCCceEEEecChh
Q 020482 87 AKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPEAN 155 (325)
Q Consensus 87 A~~Av~~AL~dG~~rleVEfP~l~l~~~pGd~d~~~e~~~~~~la~~~~~~~l~~~~g~~vkv~fPDag 155 (325)
+.+++.++|+.=++.+.|..+.+.. .+++..|.++. ..|-+|+|++.+.+
T Consensus 14 ~~~~i~~~I~~A~~~I~I~~~~~~~----------------~~i~~aL~~a~---~rGV~Vril~~~~~ 63 (152)
T d1byra_ 14 ARVLVLSAIDSAKTSIRMMAYSFTA----------------PDIMKALVAAK---KRGVDVKIVIDERG 63 (152)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSBCC----------------HHHHHHHHHHH---HTTCEEEEEEESTT
T ss_pred HHHHHHHHHHhCCcEEEEEEEeecC----------------HHHHHHHHHHH---hcCCeEEEEEEeec
Confidence 4556777777778889999887643 45666666663 47999999987753
No 6
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=16.94 E-value=45 Score=23.27 Aligned_cols=19 Identities=16% Similarity=-0.132 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q 020482 79 DYSELLDQAKMAAELAVKD 97 (325)
Q Consensus 79 s~~eav~qA~~Av~~AL~d 97 (325)
|++||++.|++|+...|..
T Consensus 43 T~eEA~~~a~eAl~~~l~~ 61 (80)
T d2dsya1 43 SLKECEANLQAALEDWLLF 61 (80)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999876553
No 7
>d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein, L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.20 E-value=74 Score=23.32 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHc
Q 020482 73 DVPFPSDYSELLDQAKMAAELAVKD 97 (325)
Q Consensus 73 ~~~lP~s~~eav~qA~~Av~~AL~d 97 (325)
....|.|.+++.+|+.+.+.+.|++
T Consensus 43 ~~~~~~~i~~Q~~~~~~~i~~vL~~ 67 (132)
T d1qaha_ 43 GQLVPGGVAEEAKQALKNLGEILKA 67 (132)
T ss_dssp CSBCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHH
Confidence 3345789999999999999998886
No 8
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.34 E-value=98 Score=25.45 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=20.5
Q ss_pred CCCCceEEEEe---ecCChhcHHHHHHHHHHhhhCCCeeEEEEcC
Q 020482 197 KLEDELFLVAY---PYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (325)
Q Consensus 197 ~~~d~~~vvv~---P~~~~~el~~vE~l~~~a~~~~~rPvVllNp 238 (325)
..-|.++||+. |.++..-++-.--+++. .+-.|+|+||=
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK 50 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINK 50 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECC
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeC
Confidence 34466777765 34433333333233432 36677888773
No 9
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=13.28 E-value=70 Score=26.89 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=37.4
Q ss_pred CCCceEEEEeecCChhcHHHHHHHHHHhhhCCCeeEEEEcCccccccCCCCCCcccHHHHHHHhhhcccceEEE
Q 020482 198 LEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIY 271 (325)
Q Consensus 198 ~~d~~~vvv~P~~~~~el~~vE~l~~~a~~~~~rPvVllNp~Ldd~~~g~g~~~F~pk~R~lr~~FLs~fe~vY 271 (325)
..|-+++||-... .-..+.+++.+.+ .....|.++|-.++|+. .++ .....+++++|- ...++.
T Consensus 90 ~~D~avlvvda~~--Gv~~~t~~~~~~~-~~~~~p~~i~iNk~D~~-~~~-----~~~l~~~~~~lg-~~vp~~ 153 (267)
T d2dy1a2 90 AADAALVAVSAEA--GVQVGTERAWTVA-ERLGLPRMVVVTKLDKG-GDY-----YALLEDLRSTLG-PILPID 153 (267)
T ss_dssp HCSEEEEEEETTT--CSCHHHHHHHHHH-HHTTCCEEEEEECGGGC-CCH-----HHHHHHHHHHHC-SEEECE
T ss_pred ccCceEEEeeccC--CccchhHHHHHhh-hhccccccccccccccc-ccc-----hhhhhhHHHHhc-cCcCeE
Confidence 3455666665444 3334444444432 23678989999999973 333 334678888884 444443
No 10
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.61 E-value=1.4e+02 Score=24.53 Aligned_cols=41 Identities=12% Similarity=-0.016 Sum_probs=21.3
Q ss_pred CCCCceEEEEee-cCChhcHHHHHHHHHHhhhCCCeeEEEEcC
Q 020482 197 KLEDELFLVAYP-YFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (325)
Q Consensus 197 ~~~d~~~vvv~P-~~~~~el~~vE~l~~~a~~~~~rPvVllNp 238 (325)
..-|.++||+.. ++. -.+..++++--.+...+-.|+|+||=
T Consensus 9 ANiD~~~iV~s~~~P~-~~~~~idR~Lv~a~~~~i~pvIvlnK 50 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPS-FSTALLDRFLVLVEANDIQPIICITK 50 (231)
T ss_dssp ECCCEEEEEEESTTTT-CCHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cccCEEEEEEECCCCC-CCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 345677777643 331 23344555432222245678888873
Done!