Query 020483
Match_columns 325
No_of_seqs 140 out of 412
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1r_A Archaeal adhesion filam 47.7 19 0.00064 21.8 3.0 22 113-134 4-25 (26)
2 3rko_A NADH-quinone oxidoreduc 23.4 17 0.00057 30.8 -0.0 68 35-102 52-128 (147)
3 2o8m_C Protease; NS3, NS4A, vi 8.3 1E+02 0.0035 18.7 0.5 8 313-320 17-24 (26)
4 2ab9_A Pro-SFTI-1; protein, be 6.6 1.5E+02 0.0052 18.1 0.7 8 312-319 22-29 (31)
5 3rlb_A THIT; S-component, ECF 6.5 7.2E+02 0.025 21.3 5.4 90 71-160 64-178 (192)
6 1vf5_F Protein PET M; photosyn 5.6 4.8E+02 0.016 16.7 2.7 24 143-167 7-30 (35)
7 4sgb_I Potato inhibitor, PCI-1 4.8 2.2E+02 0.0074 19.8 0.7 13 33-45 34-46 (51)
8 1r7c_A Genome polyprotein; mem 3.9 5.5E+02 0.019 16.0 2.0 16 291-306 2-17 (31)
9 2rod_B NOXA, noxaa; MCL-1, apo 3.3 3.4E+02 0.012 16.1 0.5 7 181-187 18-24 (27)
10 1ce3_A Protein (API); protease 3.2 4.4E+02 0.015 18.5 1.2 11 34-44 3-13 (54)
No 1
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=47.73 E-value=19 Score=21.83 Aligned_cols=22 Identities=14% Similarity=0.637 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc
Q 020483 113 MLIATVAYIICIVGIIMMYIWY 134 (325)
Q Consensus 113 l~~T~~~Y~~si~~~vlmy~~f 134 (325)
+..++++-.+++++.+++|.|+
T Consensus 4 iVA~~lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788889999999999987
No 2
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=23.44 E-value=17 Score=30.78 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=34.5
Q ss_pred ccCCCC--CCccccccceeeeeehhcc----cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhHH---hhcC
Q 020483 35 CPLDCL--DNHPISSSFFLYSTLWGDC----SFWCRVSLIPIMFSCLRNMVFLLIQLISVISFITWLNDC---CLSE 102 (325)
Q Consensus 35 c~~~~~--~~~~~q~~~f~k~~l~~~~----~FF~~~~~i~~~i~~~Ga~lFIliQLIlLVDFAh~WNe~---Wv~~ 102 (325)
|-.|+. .|..+.=++|+.-++|+.. .|..|........+..|-...+++=+||++-+.|.|++. |.++
T Consensus 52 CGfdp~~~ar~~FsirFfLiAilFlIFDvEi~~L~Pwa~~~~~~~~~~~~~~~~Fl~iL~~Gl~yEW~~GaL~W~~~ 128 (147)
T 3rko_A 52 SGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWTPA 128 (147)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC--
T ss_pred cCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCeEeccC
Confidence 445543 3555666777777777765 444443211112333333334455567889999999995 7654
No 3
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=8.28 E-value=1e+02 Score=18.69 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=4.7
Q ss_pred cccccCCC
Q 020483 313 PVILKSSR 320 (325)
Q Consensus 313 P~v~pdRd 320 (325)
|.+-||||
T Consensus 17 p~v~Pdre 24 (26)
T 2o8m_C 17 PAIIPKKX 24 (26)
T ss_dssp CEECCCC-
T ss_pred eEEcCCcC
Confidence 56667775
No 4
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=6.57 E-value=1.5e+02 Score=18.14 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=4.5
Q ss_pred hcccccCC
Q 020483 312 APVILKSS 319 (325)
Q Consensus 312 AP~v~pdR 319 (325)
-|+||||.
T Consensus 22 ppicfpdg 29 (31)
T 2ab9_A 22 PPICFPDG 29 (31)
T ss_dssp SCSSSSCC
T ss_pred CCcccCCC
Confidence 46666653
No 5
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=6.48 E-value=7.2e+02 Score=21.32 Aligned_cols=90 Identities=9% Similarity=0.119 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHHHHHHH----HHHHHHHhHH-----------hhcCc-CCc--hh-HHHHHHHHHHHHHHHHHHHHhhh
Q 020483 71 MFSCLRNMVFLLIQLISV----ISFITWLNDC-----------CLSEK-NAE--RC-HIHVMLIATVAYIICIVGIIMMY 131 (325)
Q Consensus 71 ~i~~~Ga~lFIliQLIlL----VDFAh~WNe~-----------Wv~~~-~~~--~w-~~~Ll~~T~~~Y~~si~~~vlmy 131 (325)
..|.+.++++-++|+++= .+.....-|. ...++ .++ .+ ..+.+..+++.|......-+++|
T Consensus 64 ~~G~~~g~i~gll~~i~g~~~~~~p~q~lldy~laf~~~GlaG~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~isgvvff 143 (192)
T 3rlb_A 64 TAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFW 143 (192)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCSSHHHHHHHHTHHHHHGGGGGGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHHhheeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888999998871 1112222221 11111 122 11 23566678888888888877888
Q ss_pred hhccCCC------CCchhHHHHHHHHHHHHHHhhh
Q 020483 132 IWYTPDP------TCLLNIFFITWTLVLLQLMTSV 160 (325)
Q Consensus 132 ~~ft~~~------gC~lN~~fIt~nliL~vi~svi 160 (325)
--|+|.+ +-..|.-++..+.++|.++..+
T Consensus 144 ~~yaP~g~~~~~ySl~~N~~~~l~~~ii~~iv~~l 178 (192)
T 3rlb_A 144 SQYAWKGWGAVAYSLAVNGISGILTAIAAFVILII 178 (192)
T ss_dssp GGGCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888752 1235666666667777666655
No 6
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=5.63 E-value=4.8e+02 Score=16.73 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccc
Q 020483 143 NIFFITWTLVLLQLMTSVSLHPKIN 167 (325)
Q Consensus 143 N~~fIt~nliL~vi~sviSi~p~v~ 167 (325)
|.+.|.+.++|.-+.-..-++ |+|
T Consensus 7 ~~A~i~~~LvLvGla~Gf~LL-kiq 30 (35)
T 1vf5_F 7 YAALLSFGLIFVGWGLGVLLL-KIQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHHHhh-eee
Confidence 455566666654443333333 444
No 7
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=4.77 E-value=2.2e+02 Score=19.81 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=10.5
Q ss_pred ccccCCCCCCccc
Q 020483 33 KDCPLDCLDNHPI 45 (325)
Q Consensus 33 ~~c~~~~~~~~~~ 45 (325)
|.|+.+|++|.++
T Consensus 34 k~Cp~~CD~rIay 46 (51)
T 4sgb_I 34 KACPLNCDPHIAY 46 (51)
T ss_dssp CCEECCBCTTCCE
T ss_pred CcCcccCCCceee
Confidence 5688999999775
No 8
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=3.93 E-value=5.5e+02 Score=16.04 Aligned_cols=16 Identities=19% Similarity=0.761 Sum_probs=13.9
Q ss_pred ehhhhhHHHHHHHHHH
Q 020483 291 STWVRIVNEWLAVCVY 306 (325)
Q Consensus 291 s~WVKi~SsW~c~~LY 306 (325)
.-|.+-+=.|+|-.||
T Consensus 2 ~swL~~iwdWvctvLs 17 (31)
T 1r7c_A 2 GSWLRDIWDWICEVLS 17 (31)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 3588999999999998
No 9
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=3.27 E-value=3.4e+02 Score=16.08 Aligned_cols=7 Identities=29% Similarity=1.089 Sum_probs=4.0
Q ss_pred Hhhhhhh
Q 020483 181 IFLCWCA 187 (325)
Q Consensus 181 ~YLt~SA 187 (325)
+|-||||
T Consensus 18 vyctwsa 24 (27)
T 2rod_B 18 VYCTWSA 24 (27)
T ss_dssp HHHHHHS
T ss_pred eEEeecC
Confidence 4556665
No 10
>1ce3_A Protein (API); protease inhibitor, circular permutation; NMR {Nicotiana alata} SCOP: g.69.1.1
Probab=3.16 E-value=4.4e+02 Score=18.49 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=5.5
Q ss_pred cccCCCCCCcc
Q 020483 34 DCPLDCLDNHP 44 (325)
Q Consensus 34 ~c~~~~~~~~~ 44 (325)
-|+.+|++|.+
T Consensus 3 aCp~~Cd~~i~ 13 (54)
T 1ce3_A 3 ACTLNCDPRIA 13 (54)
T ss_dssp CCCSSCCTTCC
T ss_pred ccccccCCccc
Confidence 45555555544
Done!