BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020484
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QC1|A Chain A, Protein Phosphatase Subunit: Alpha4
Length = 243
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 20/161 (12%)
Query: 15 FERGRKIHQ---IATE---SGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTAN 68
FE +K+ + +ATE S D V KG E+LEK M+ +L LFS NE ++I++ +
Sbjct: 37 FETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASTD 96
Query: 69 LKYILVPYFLGEL-IEKIAQDDRLQILKASQAKLKEFISFC-----------EIMXXXXX 116
LKY++VP G L ++++ RL L+ ++ F++ C +
Sbjct: 97 LKYLMVPALQGALTMKQVNPSKRLDHLQRAREHFVHFLTQCHCYHVAEFQLPQTKTNSAE 156
Query: 117 XXXXXXXQAKPT--AFTDQRARKIARFKRQRAAESKLQEIK 155
A P A QR KI R+K+++ E +L +K
Sbjct: 157 NNTASSSMAYPNLVAMASQRQAKIERYKQKKEVEHRLSALK 197
>pdb|2V0P|A Chain A, The Structure Of Tap42 Alpha4 Subunit
pdb|2V0P|B Chain B, The Structure Of Tap42 Alpha4 Subunit
Length = 234
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 12/73 (16%)
Query: 48 MVGKLGLFSSNETKDDISTANLKYILVPYFLGELIEKIAQDD---------RLQILKASQ 98
+ +L LFS+NET DD+STA++K++ V Y+LG LI + +D +L LK S
Sbjct: 49 IFDRLALFSTNETIDDVSTASIKFLAVDYYLGLLISRRQSNDSDVAQRQSXKLIYLKKS- 107
Query: 99 AKLKEFISFCEIM 111
++ FI+F ++
Sbjct: 108 --VESFINFLTLL 118
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 46 EDMVGKLGLFSSNETKDDISTANLKYILVPYF---LGELI--EKIAQDDRLQILKASQAK 100
E+++G L +F+ +ET DD + Y+++P+ LG+L+ EK+ + DR+Q L K
Sbjct: 84 ENVIGLLDVFTPDETLDDFTDF---YLVMPFMGTDLGKLMKHEKLGE-DRIQFLVYQMLK 139
Query: 101 LKEFISFCEIM 111
+I I+
Sbjct: 140 GLRYIHAAGII 150
>pdb|1T7N|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Crat
pdb|1T7O|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine
Length = 618
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 221 VKERQLKGGEEEFSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCAT 269
V E Q GG E + L+ R+KK E+W + ++ Y + QP+ +
Sbjct: 62 VDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYS 110
>pdb|1T7Q|A Chain A, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
pdb|1T7Q|B Chain B, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
Length = 618
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 221 VKERQLKGGEEEFSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCAT 269
V E Q GG E + L+ R+KK E+W + ++ Y + QP+ +
Sbjct: 62 VDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYS 110
>pdb|2H3W|A Chain A, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
pdb|2H3W|B Chain B, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
Length = 599
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 221 VKERQLKGGEEEFSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCAT 269
V E Q GG E + L+ R+KK E+W + ++ Y + QP+ +
Sbjct: 44 VDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYS 92
>pdb|1NDF|A Chain A, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDF|B Chain B, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDI|A Chain A, Carnitine Acetyltransferase In Complex With Coa
pdb|1NDI|B Chain B, Carnitine Acetyltransferase In Complex With Coa
Length = 596
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 221 VKERQLKGGEEEFSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCAT 269
V E Q GG E + L+ R+KK E+W + ++ Y + QP+ +
Sbjct: 41 VDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYS 89
>pdb|2H3P|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3P|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3U|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
pdb|2H3U|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
Length = 599
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 221 VKERQLKGGEEEFSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCAT 269
V E Q GG E + L+ R+KK E+W + ++ Y + QP+ +
Sbjct: 44 VDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYS 92
>pdb|1NDB|A Chain A, Crystal Structure Of Carnitine Acetyltransferase
pdb|1NDB|B Chain B, Crystal Structure Of Carnitine Acetyltransferase
Length = 596
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 221 VKERQLKGGEEEFSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCAT 269
V E Q GG E + L+ R+KK E+W + ++ Y + QP+ +
Sbjct: 41 VDEFQTSGGVGERLQKGLERRAKKXENWLSEWWLKTAYLQFRQPVVIYS 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,353,232
Number of Sequences: 62578
Number of extensions: 239752
Number of successful extensions: 532
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 10
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)