Query 020484
Match_columns 325
No_of_seqs 182 out of 272
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 03:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020484.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020484hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v4ra1 a.4.5.6 (A:1-100) Tran 34.8 6.2 0.00045 28.6 1.2 19 306-324 17-35 (100)
2 d1hw1a1 a.4.5.6 (A:5-78) Fatty 34.5 9.3 0.00068 26.1 2.1 18 307-324 12-29 (74)
3 d1skye1 a.69.1.1 (E:357-470) F 31.0 14 0.00098 27.9 2.6 49 31-86 10-68 (114)
4 d2jdid1 a.69.1.1 (D:358-475) F 28.1 16 0.0011 27.7 2.5 49 31-86 13-71 (118)
5 d1fx0b1 a.69.1.1 (B:378-485) F 24.3 22 0.0016 26.3 2.8 48 31-85 10-67 (108)
6 d2hs5a1 a.4.5.6 (A:25-93) Puta 22.2 15 0.0011 24.5 1.3 17 307-323 11-27 (69)
7 d2ahob1 a.60.14.1 (B:85-175) E 12.0 1.2E+02 0.009 20.9 4.3 25 132-156 4-28 (91)
8 d2pqrb1 a.118.8.1 (B:5-128) Mi 10.0 3E+02 0.022 20.0 6.2 72 7-107 31-102 (124)
9 d2gsca1 a.29.16.1 (A:9-125) Un 7.2 3.6E+02 0.027 18.6 9.4 50 72-121 43-95 (117)
10 d1vcsa1 a.47.2.1 (A:8-96) Vesi 7.1 3.5E+02 0.025 18.3 6.0 50 87-144 26-75 (89)
No 1
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=34.80 E-value=6.2 Score=28.58 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=17.4
Q ss_pred hHHHHHHhccCCCCCCCCC
Q 020484 306 SERERMAAQVFQPMHRNVL 324 (325)
Q Consensus 306 ~~R~~l~~~VF~p~h~LPT 324 (325)
.-|+++.++.|.||.+||+
T Consensus 17 ~i~~~I~~g~l~~G~~LPs 35 (100)
T d1v4ra1 17 HFRTLIKSGELAPGDTLPS 35 (100)
T ss_dssp HHHHHTTTTSCCTTSBCCC
T ss_pred HHHHHHHcCCCCCcCCCcc
Confidence 5699999999999999997
No 2
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.52 E-value=9.3 Score=26.12 Aligned_cols=18 Identities=17% Similarity=-0.038 Sum_probs=16.2
Q ss_pred HHHHHHhccCCCCCCCCC
Q 020484 307 ERERMAAQVFQPMHRNVL 324 (325)
Q Consensus 307 ~R~~l~~~VF~p~h~LPT 324 (325)
-++.+..+.|.||.+||+
T Consensus 12 i~~~I~~g~~~~G~~LPs 29 (74)
T d1hw1a1 12 IIESIWNNRFPPGTILPA 29 (74)
T ss_dssp HHHHHHTTSSCTTSBCCC
T ss_pred HHHHHHcCCCCCcCCCcc
Confidence 478899999999999997
No 3
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=31.05 E-value=14 Score=27.86 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccccccc----------chhhchHHHhhHhhcccc
Q 020484 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTAN----------LKYILVPYFLGELIEKIA 86 (325)
Q Consensus 31 ~Q~~l~~~i~~l~~~~~~v~~l~LFS~NE~leDIsT~~----------LkyLlvpy~Lg~L~~k~~ 86 (325)
....|++.+..++..+.+|.-||+ ||+|.+| -+||.=|||.++...-..
T Consensus 10 ~a~~v~~~LqrYkeLqDIIaiLG~-------dELSeeDk~~V~RARklqrFLsQpF~vaE~fTG~~ 68 (114)
T d1skye1 10 VARKVQQTLERYKELQDIIAILGM-------DELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQP 68 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS-------TTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc-------hhcCHHHHHHHHHHHHHHHHhcCCceeceeecCCC
Confidence 456789999999999999999997 8888877 368888999999887653
No 4
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=28.10 E-value=16 Score=27.66 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccccccc----------chhhchHHHhhHhhcccc
Q 020484 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTAN----------LKYILVPYFLGELIEKIA 86 (325)
Q Consensus 31 ~Q~~l~~~i~~l~~~~~~v~~l~LFS~NE~leDIsT~~----------LkyLlvpy~Lg~L~~k~~ 86 (325)
....|++.+..++..+.+|.-||+ ||+|.+| -+||.=|||.++...-..
T Consensus 13 ~a~~V~~~LqrYkeLqdIIaiLG~-------dELSeeDk~~V~RARklqrfLsQpFfvae~fTg~~ 71 (118)
T d2jdid1 13 VARGVQKILQDYKSLQDIIAILGM-------DELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHL 71 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCG-------GGSCHHHHHHHHHHHHHHHHHCCCCGGGHHHHSSC
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCh-------hhcCHHHhHHHHHHHHHHHHhcCcceeeeeecCCC
Confidence 456789999999999999999997 8888877 479999999999987653
No 5
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=24.27 E-value=22 Score=26.33 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccccccc----------chhhchHHHhhHhhccc
Q 020484 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTAN----------LKYILVPYFLGELIEKI 85 (325)
Q Consensus 31 ~Q~~l~~~i~~l~~~~~~v~~l~LFS~NE~leDIsT~~----------LkyLlvpy~Lg~L~~k~ 85 (325)
....|++.+..++..+.+|.-||+ ||+|.+| -+||.=|||.++.....
T Consensus 10 ~a~~v~~iLqrYkeLqdIIailG~-------dELSeeDk~~v~RArklq~FLtQpFfvae~fTg~ 67 (108)
T d1fx0b1 10 IAQRVKETLQRYKELQDIIAILGL-------DELSEEDRLTVARARKIERFLSQPFFVAEVFTGS 67 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS-------TTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hhcChhhhHHHHHHHHHHHHhccccccceecCCC
Confidence 456789999999999999999997 7777776 46888899999888654
No 6
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=22.23 E-value=15 Score=24.46 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=15.1
Q ss_pred HHHHHHhccCCCCCCCC
Q 020484 307 ERERMAAQVFQPMHRNV 323 (325)
Q Consensus 307 ~R~~l~~~VF~p~h~LP 323 (325)
-|+++..+.|.||.+||
T Consensus 11 l~~~I~~g~~~~G~~l~ 27 (69)
T d2hs5a1 11 LRDAIIDGTFRPGARLS 27 (69)
T ss_dssp HHHHHHHTSSCTTCEEC
T ss_pred HHHHHHcCCCCCcCccC
Confidence 47899999999999987
No 7
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=12.04 E-value=1.2e+02 Score=20.86 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020484 132 DQRARKIARFKRQRAAESKLQEIKE 156 (325)
Q Consensus 132 ~~R~~KIarfK~eKel~~kL~~L~~ 156 (325)
.+|..||.+||+++....-|..+.+
T Consensus 4 ~qrr~k~~~~k~~qka~~il~~vAe 28 (91)
T d2ahob1 4 DERRKKNLQWKKIQRLDKILELVSQ 28 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998888765
No 8
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.02 E-value=3e+02 Score=19.98 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccccchhhchHHHhhHhhcccc
Q 020484 7 EELPLPSLFERGRKIHQIATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGELIEKIA 86 (325)
Q Consensus 7 ~~~sL~~lF~~a~~~~~~~~~s~~~Q~~l~~~i~~l~~~~~~v~~l~LFS~NE~leDIsT~~LkyLlvpy~Lg~L~~k~~ 86 (325)
...++...|.-||.+.. +.+.+.+..+|..|+.+-+.. .+-..+-| ||||..+-++
T Consensus 31 ~~~s~qt~F~YAw~Lv~-----S~~~~d~~~gI~lLe~~~~~~------------p~~~rd~l------Y~Lav~yykl- 86 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIK-----STDVNDERLGVKILTDIYKEA------------ESRRRECL------YYLTIGCYKL- 86 (124)
T ss_dssp GGSCHHHHHHHHHHHHH-----SSCHHHHHHHHHHHHHHHHHC------------GGGHHHHH------HHHHHHHHHH-
T ss_pred CCCCcchHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHhcC------------chhHHHHH------HHHHHHHHHH-
Confidence 34677788888887642 246788999999997765421 01122333 4555554443
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 020484 87 QDDRLQILKASQAKLKEFISF 107 (325)
Q Consensus 87 ~~~R~~~L~~A~~~~~~FL~~ 107 (325)
.....|..|+..+|+.
T Consensus 87 -----gdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 87 -----GEYSMAKRYVDTLFEH 102 (124)
T ss_dssp -----TCHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHcc
Confidence 3356677777776654
No 9
>d2gsca1 a.29.16.1 (A:9-125) Uncharacterized protein XCC0516 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=7.18 E-value=3.6e+02 Score=18.59 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=34.9
Q ss_pred hchHHHhhHhhcccchhhHHHHHHHHHHHHHH---HHHHhhhcCCCChhHHHH
Q 020484 72 ILVPYFLGELIEKIAQDDRLQILKASQAKLKE---FISFCEIMELVPEEELEA 121 (325)
Q Consensus 72 Llvpy~Lg~L~~k~~~~~R~~~L~~A~~~~~~---FL~~~~~y~ll~~~~~~~ 121 (325)
+.||.-+|+...+....+....|..|..-..+ .|..|.+.|++++++.+.
T Consensus 43 ~SI~~NIaEg~~r~s~~d~~~fl~iA~gs~~E~~~~l~la~~~~~i~~~~~~~ 95 (117)
T d2gsca1 43 VSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIAARLGYSRSEDDQS 95 (117)
T ss_dssp HHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 45777888888876666788888777655544 488899999999876553
No 10
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.14 E-value=3.5e+02 Score=18.30 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHhhcCCcchHHHHHHHHHHHHHH
Q 020484 87 QDDRLQILKASQAKLKEFISFCEIMELVPEEELEAVAQAKPTAFTDQRARKIARFKRQ 144 (325)
Q Consensus 87 ~~~R~~~L~~A~~~~~~FL~~~~~y~ll~~~~~~~~~~~~~~~~a~~R~~KIarfK~e 144 (325)
.+.|...|..+...+.+=-..++.++| + .+..+.+.-..=+.||..||.+
T Consensus 26 geerk~~l~~ie~~leEA~ell~qMel------E--vr~~p~s~R~~~~~klr~Yk~d 75 (89)
T d1vcsa1 26 PDEKKQMVANVEKQLEEARELLEQMDL------E--VREIPPQSRGMYSNRMRSYKQE 75 (89)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHH------H--HTTSCTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHH------H--HHhCCHHHHHHHHHHHHHHHHH
Confidence 467999999999988888888887775 0 1111222222225678888754
Done!