BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020486
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UHX9|CI114_MOUSE Uncharacterized protein C9orf114 homolog OS=Mus musculus
GN=D2Wsu81e PE=2 SV=1
Length = 385
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 147/241 (60%), Gaps = 8/241 (3%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T+SVA+PGSI+DN QS EL T LAGQIARA TIF +DE+VVFD + S
Sbjct: 75 TLSVALPGSILDNAQSPELRTYLAGQIARACTIFCVDEIVVFDEEGQDTK----SVEGEF 130
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
+ L R+LQYLE PQYLRKA F H L+F G+L PLD+PHH+R+ E + F
Sbjct: 131 RGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGILNPLDSPHHMRQDEESEF 190
Query: 182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPR-QVVPP 240
REGV + G+LV+ G+ K V +D+ LDPG+RVTV + + + + + VV
Sbjct: 191 REGVVVDRPTKAGHGSLVNCGMKKEVKIDKKLDPGLRVTVRLNQQQLPECKTYKGTVVSS 250
Query: 241 SKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRSM 299
P+ ++G+YWGY VR A +S+VF ++ GYD IGTSE G V S+ LP+FR
Sbjct: 251 QDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQ--LPSFRHA 308
Query: 300 L 300
L
Sbjct: 309 L 309
>sp|Q5T280|CI114_HUMAN Uncharacterized protein C9orf114 OS=Homo sapiens GN=C9orf114 PE=1
SV=3
Length = 376
Score = 201 bits (511), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 144/241 (59%), Gaps = 8/241 (3%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T+SVA+PGSI+DN QS EL T LAGQIARA IF +DE+VVFD +
Sbjct: 74 TLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFTGVG 133
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
+ L R+LQYLE PQYLRKA F H L+F G+L PLD+PHH+R+ E + F
Sbjct: 134 KKG----QACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEESEF 189
Query: 182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPR-QVVPP 240
REG+ + G+ V+ G+ K V +D+ L+PG+RVTV + ++ D + +VV
Sbjct: 190 REGIVVDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDCKTYHGKVVSS 249
Query: 241 SKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRSM 299
P+ ++G+YWGY VR A +S+VF ++ GYD IGTSE G V S+ LP FR
Sbjct: 250 QDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQ--LPNFRHA 307
Query: 300 L 300
L
Sbjct: 308 L 308
>sp|Q10950|YMP6_CAEEL Uncharacterized protein B0361.6 OS=Caenorhabditis elegans
GN=B0361.6 PE=4 SV=1
Length = 378
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 142/263 (53%), Gaps = 19/263 (7%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T+S+AVPG ++N QS EL T +AGQIARA T++R+DE++++D + + ++ N +
Sbjct: 67 TISIAVPGQFLNNAQSAELRTYMAGQIARAATLYRVDEIIIYDESCRMTDEAVNAYYNGT 126
Query: 122 NR-----SDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKH 176
+ ++ N G +L ++L+YLE PQYLRK LF + L+ G+L PLDA HHL+
Sbjct: 127 WQGNLIPAETNYEGCFYLAKILEYLECPQYLRKDLFPIQKPLKNAGLLNPLDAQHHLKYD 186
Query: 177 EWA-PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQ---VLDPGVRVTVAMGTNRNLDAD 232
E FREGV LK+ + + G + ++GL K +D L P RVTV + N
Sbjct: 187 EKTLRFREGVVLKKRSKDGRGPICNIGLEKEFEIDSDAVQLPPYTRVTVEI-KNLTEQCK 245
Query: 233 SPRQVVP--PSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSD 290
R + + +E+G+YWGY VR + V + +D + G S G + + D
Sbjct: 246 LYRGSITSGATVTRETGLYWGYSVRLMTGLQKVLQ----AKKFDIVAGVSPRGKLASQMD 301
Query: 291 LTLPTFRSMLGYALYYWVIASVD 313
+ + +L L + +A VD
Sbjct: 302 VCILNKPKIL---LVFGGVAGVD 321
>sp|O13641|YGWG_SCHPO Uncharacterized protein C8D2.16c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pi049 PE=4 SV=1
Length = 315
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 132/265 (49%), Gaps = 26/265 (9%)
Query: 48 KRDQLNDDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKS 107
K ++ P T+S+A+P S ++ +L+L T +I+R V+++ IDE+++ ++
Sbjct: 3 KESEIQSLPPTRRYTISLALPISSLNVAYNLQLKTSFVWKISRIVSLYGIDEIILLEDPE 62
Query: 108 SSDNYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLP-- 165
N + ++ + D + FL LL Y ETP ++RK LF ++ L++ P
Sbjct: 63 YVQNTQVHTLSSDAYLKDPTK----FLTDLLCYFETPFFMRKELFPLNPHLKYTSCFPLL 118
Query: 166 PLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVD--QVLDPGVRVTVAM 223
PL + P+REG+ + +++ GL+ +V+V VL P RVTV
Sbjct: 119 PLRNDKASTVNIEFPYREGIVTHPSPQAKNKYIINAGLSHNVIVSSPSVLAPRTRVTV-- 176
Query: 224 GTNRNLDADSPRQ-------VVPPSKPKES-GMYWGYKVRYAPNISSVFKNCSYKGGYDH 275
L A SP + +V S P+E G YWGYKVR + S + K+ YKGGYD
Sbjct: 177 ----RLKAQSPNEEGQLQGDIVSFSAPREKGGHYWGYKVRSCLS-SQLCKSSPYKGGYDF 231
Query: 276 LIGTSEHGDIVNSSDL--TLP-TFR 297
++ + + S +L +LP +FR
Sbjct: 232 VVQINSQTSAITSKELEASLPSSFR 256
>sp|P53336|YG5X_YEAST Uncharacterized protein YGR283C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YGR283C PE=1 SV=1
Length = 341
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 25/208 (12%)
Query: 64 SVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNR 123
S+ +P ++IDN +LE T A QIAR +F + E++V D S+ + +R
Sbjct: 41 SICIPTTVIDNCNNLEQVTFTAYQIARTAVLFNVQEIIVLDQ-------SKDKKHEKKSR 93
Query: 124 SDENESGAAFLVRLLQYLETPQYLRKALFSMHSS--LRFVGMLPPLDAPHHLRKHEWAPF 181
S E S L LLQY TP L F + L+ PPL+ + +
Sbjct: 94 SKETISDCLLLATLLQYFVTPPNLLDTTFKKKNKLYLKCASTFPPLNQLPFMNASAEQHY 153
Query: 182 REGVTL-----KENAPNSVGTLVDVGLNKHVVV-DQVLDPGVRVTVAMGTNRNLDADSPR 235
+EG+++ K + +++ LV +G N+ + + +Q + RVTV D+ R
Sbjct: 154 KEGLSIARDSSKGKSDDALTNLVYIGKNQIITLSNQNIPNTARVTV----------DTER 203
Query: 236 QVVPPSKPKESGMYWGYKVRYAPNISSV 263
+ V G GY VR A ++ V
Sbjct: 204 KEVVSPIDAYKGKPLGYHVRMASTLNEV 231
>sp|Q06847|Y1688_HALSA Uncharacterized protein VNG_1688C OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=VNG_1688C
PE=4 SV=2
Length = 283
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T SV VP S++ + ATR G +ARA +FRID VVVF ++
Sbjct: 2 TRSVLVPSSLVREAEDKREATRKLGYVARAAAVFRIDRVVVFPDEDG------------- 48
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPL 167
E + G F+ +L+Y TP YLRK F L + G+LPPL
Sbjct: 49 ----ERQWGGGFVETVLRYAATPPYLRKEAFDTRDELAYAGVLPPL 90
>sp|Q04867|YM91_YEAST Uncharacterized protein YMR310C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR310C PE=1 SV=1
Length = 317
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 40/231 (17%)
Query: 64 SVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNR 123
S+ +P +++ + ++L T Q+A+ ++F + EVV+ ++ S D
Sbjct: 21 SLCIPTTLVSDCRNLSQITHKVYQVAKFASLFNVSEVVILEDNSQVDA------------ 68
Query: 124 SDENESGAAFLVRLLQYLETPQYLRKALFS--MHSSLRFVGMLPPLDAPHHLR--KHEWA 179
+ + S A ++ LLQY TP YLR +F+ L LP L R K +
Sbjct: 69 TKKKISTAKLILALLQYFVTPPYLRNTVFNEKFRPYLTAASKLPRLSTLPFTRYQKQDHG 128
Query: 180 PFREGVTLKENAPN----SVGTL------VDVGLNKHVVVDQVLDP-GVRVTVAMGTNRN 228
+REG+T+K P +G + +++G +K + + L P RVT+ T
Sbjct: 129 RYREGLTIKMQKPTLARKKIGKVFKQTKYINIGKSKALALQSQLVPINARVTIDTIT--- 185
Query: 229 LDADSPRQVVPPSKP--KESGM--YWGYKVRYAPNISSVFKNCSYKGGYDH 275
R++V P + +G+ +GY R A + + +F K GY
Sbjct: 186 ------RKIVSPQEAYGDFTGLDSQYGYYTRIASSFTDLFMKGPLKEGYTQ 230
>sp|P20571|Y1612_HALMA Uncharacterized protein rrnAC1612 OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rrnAC1612 PE=4 SV=2
Length = 281
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T SV VP S+ + ATR G +ARA ++R+D + V+ + + +
Sbjct: 2 TTSVLVPSSLAREAEDRREATRKLGYVARAAAVYRVDRLTVYPDPDGAGKW--------- 52
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
E G F+ +L+Y TP +LRK ++ L +VG+LPPL +R +
Sbjct: 53 ------EDG--FVETVLRYAATPPHLRKEMWGKRDELEYVGVLPPL----RVRSQTGSGS 100
Query: 182 REGVTLKENAPNSVGTLVDVGLN---KH-----VVVDQVLDPGVRVTVAMGTNRNLDA 231
+L++ VG V +N +H V D ++ G RVTV + + R + A
Sbjct: 101 EGSGSLRQGIVTEVGADGRVRVNCGMQHPISLPVPADMDVEQGERVTVRVSSRRPVRA 158
>sp|A1Z9P3|SHRM_DROME Protein Shroom OS=Drosophila melanogaster GN=Shroom PE=1 SV=2
Length = 1576
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 184 GVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPG-----VRVTVAMGTNRNLDADSPRQVV 238
GVT K PN++ ++ +G+ H L PG VT+ G+N NL +SP
Sbjct: 963 GVTGK--LPNNLPDVLPLGVKLHQ--QPKLQPGSPNGDANVTLRYGSNNNLTGNSPTVAP 1018
Query: 239 PPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTF 296
PP Y+G RY+ + S K S+ D+ ++S +T+PT
Sbjct: 1019 PP--------YYGGGQRYSTPVLGQGYGKSSKPVTPQQYTRSQSYDVKHTSAVTMPTM 1068
>sp|Q9JLM8|DCLK1_MOUSE Serine/threonine-protein kinase DCLK1 OS=Mus musculus GN=Dclk1 PE=1
SV=1
Length = 756
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 99 EVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSL 158
E+ FD + + YSR S N + + + R LQ L + + +K F +
Sbjct: 8 ELEHFDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKKVRFYRNGDR 67
Query: 159 RFVGMLPPLDAPHHLRKHE--WAPFREGVTLKENAPNSVGTLVDV-GLNKHVVVDQVLD 214
F G++ + +P R E A ++ N P V T+ + GL K +DQ+++
Sbjct: 68 YFKGIVYAI-SPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVE 125
>sp|Q29RQ3|DC1I1_BOVIN Cytoplasmic dynein 1 intermediate chain 1 OS=Bos taurus GN=DYNC1I1
PE=1 SV=1
Length = 608
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 52 LNDDAPIEVPTVSVAVPG-SIIDNTQSLELATRLA-GQIARAVTIFRIDEVVVFDNKSSS 109
LN+D EVPT SVA+ G S ++ + + +A G + I+ + E+ V N +
Sbjct: 525 LNNDT--EVPTASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHNDEWT 582
Query: 110 DNYSRSSAANRSNRSDENESGAAFL 134
++R+ R+NR+D E GA L
Sbjct: 583 -RFARTLVEIRANRADSEEEGAVEL 606
>sp|O15075|DCLK1_HUMAN Serine/threonine-protein kinase DCLK1 OS=Homo sapiens GN=DCLK1 PE=1
SV=2
Length = 740
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 103 FDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVG 162
FD + + YSR S N + + + R LQ L + + +K F + F G
Sbjct: 12 FDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKKVRFYRNGDRYFKG 71
Query: 163 MLPPLDAPHHLRKHE--WAPFREGVTLKENAPNSVGTLVDV-GLNKHVVVDQVLD 214
++ + +P R E A ++ N P V T+ + GL K +DQ+++
Sbjct: 72 IVYAI-SPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVE 125
>sp|Q6N622|GLYA2_RHOPA Serine hydroxymethyltransferase 2 OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glyA2 PE=3 SV=1
Length = 434
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 172 HLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDP----GVRVTVAMGTNR 227
HL + PF + E A SVG + LNK+ + + P G+RV A GT+R
Sbjct: 331 HLAVVDLRPFGVTGNIAEQALESVG----ITLNKNAIPNDPEKPMVTSGIRVGTAAGTSR 386
Query: 228 NLDADSPRQV 237
AD R++
Sbjct: 387 GFGADQYREI 396
>sp|O88485|DC1I1_MOUSE Cytoplasmic dynein 1 intermediate chain 1 OS=Mus musculus
GN=Dync1i1 PE=1 SV=2
Length = 628
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 48 KRDQLNDDAPIEVPTVSVAVPG-SIIDNTQSLELATRLA-GQIARAVTIFRIDEVVVFDN 105
+ D N ++ EVPT SVA+ G S ++ + + +A G + I+ + E+ V N
Sbjct: 539 RLDLWNLNSDTEVPTASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHN 598
Query: 106 KSSSDNYSRSSAANRSNRSDENESGAAFL 134
+ ++R+ R+NR+D E GA L
Sbjct: 599 DEWT-RFARTLVEIRANRADSEEEGAVEL 626
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,621,333
Number of Sequences: 539616
Number of extensions: 5233707
Number of successful extensions: 15631
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 15589
Number of HSP's gapped (non-prelim): 55
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)