Query 020486
Match_columns 325
No_of_seqs 122 out of 273
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:41:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k3r_A Conserved protein MT000 100.0 3.4E-73 1.2E-77 534.3 19.8 203 60-301 3-215 (268)
2 3kty_A Probable methyltransfer 44.6 11 0.00036 32.1 2.3 32 71-106 14-45 (173)
3 1v2x_A TRNA (GM18) methyltrans 44.3 13 0.00043 32.4 2.8 31 71-105 26-56 (194)
4 2ha8_A TAR (HIV-1) RNA loop bi 42.8 14 0.00046 31.9 2.7 29 71-103 30-58 (184)
5 1zjr_A TRNA (guanosine-2'-O-)- 41.3 13 0.00044 32.8 2.4 31 71-105 29-59 (211)
6 3ilk_A Uncharacterized tRNA/RR 39.9 17 0.00059 33.1 3.0 32 71-106 11-42 (244)
7 3onp_A TRNA/RRNA methyltransfe 33.6 21 0.00073 32.4 2.6 32 71-106 8-39 (249)
8 3n4j_A RNA methyltransferase; 32.3 23 0.0008 29.9 2.5 30 71-105 8-37 (165)
9 3l8u_A SMU.1707C, putative rRN 31.3 25 0.00084 30.4 2.5 28 71-102 21-48 (182)
10 2i6d_A RNA methyltransferase, 30.2 27 0.00094 31.6 2.7 32 71-106 107-138 (257)
11 3e5y_A TRMH family RNA methylt 29.8 28 0.00094 29.2 2.5 31 71-106 9-39 (160)
12 3ic6_A Putative methylase fami 29.4 25 0.00086 31.8 2.3 32 71-106 21-52 (223)
13 1ipa_A RRMH, RNA 2'-O-ribose m 28.5 30 0.001 31.7 2.7 31 71-105 120-150 (274)
14 1gz0_A Hypothetical tRNA/RRNA 28.3 31 0.0011 31.2 2.7 31 71-105 109-139 (253)
15 1x7o_A Avirb, rRNA methyltrans 26.7 34 0.0012 31.6 2.7 32 71-106 130-161 (287)
16 3nk6_A 23S rRNA methyltransfer 25.0 38 0.0013 31.2 2.7 30 71-104 123-152 (277)
17 2k52_A Uncharacterized protein 23.3 2.1E+02 0.0072 20.7 6.1 46 177-225 4-58 (80)
18 3dcm_X AdoMet, uncharacterized 22.1 67 0.0023 28.4 3.6 25 82-106 28-52 (192)
No 1
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=100.00 E-value=3.4e-73 Score=534.29 Aligned_cols=203 Identities=29% Similarity=0.497 Sum_probs=183.8
Q ss_pred cceEEEEecCccccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeCCCCCCccccccccccCCCCCCCcchHHHHHHHHh
Q 020486 60 VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQ 139 (325)
Q Consensus 60 ~~tvSIAIP~SIlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD~~~~~~~~~~~~~~~~~~~~~~~~~~~fLa~iLq 139 (325)
++|+|||||+||++||||+|+|||+|||||||||||+|||||||+|+. .+++.||++|||
T Consensus 3 ~~t~SIaIP~Sil~~a~s~e~kT~~~gqIARAaaIF~VdEIvVy~d~~--------------------~~~~~~l~~iL~ 62 (268)
T 1k3r_A 3 RVDLSLFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDA--------------------DGEARFIRDILT 62 (268)
T ss_dssp SCEEEEEEETTTTTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEECSS--------------------CCCHHHHHHHHH
T ss_pred eeEEEEEechHHhccCCCHHHHHHHHHHHHHHHHhccccEEEEEeCCC--------------------CCHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999998863 124789999999
Q ss_pred HhcCCchhhhhhcCCCCCccccCcCCCCCCCCCCCC-CCcccceEEEEeeccCCCCCceEEEeCCCceeeecccCC--CC
Q 020486 140 YLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRK-HEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLD--PG 216 (325)
Q Consensus 140 YlETPpYLRK~LFP~h~dLKyaGlLPPLd~PHH~r~-~e~~~yREGvVv~~~~~~g~gs~VdvGL~k~v~i~~~l~--~g 216 (325)
||||||||||+|||+|++|||||+||||++|||++. ++|++||||+|+++. +++++||||+.+++.++ +| +|
T Consensus 63 YleTPpYLRK~lFp~~~~Lk~aGlLPpL~~phH~~~~~~~~~yREGvv~~~~---~~~~~VdiGl~~~v~~~--~p~~~g 137 (268)
T 1k3r_A 63 YMDTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRV---KKGTLVDIGADKLALCR--EKLTVN 137 (268)
T ss_dssp HHHSCHHHHHHHCCCCGGGGGGGGCCCCCCTTSCCSSCCTTCEEEEEEEEEC---SSSEEEESSSSCEEECS--SCCCSS
T ss_pred HhcCChhHhHhhCCCCcCcceecCcCCCCCCCCCCCCCCccceEEEEEEEec---CCceEEEeCCCceEEEe--cCCCCC
Confidence 999999999999999999999999999999999987 889999999999984 56799999999999998 88 99
Q ss_pred cEEEEEecCCCCCCCCCCceecCCCCCCCCCcccceEEEEc--CChHHHhhcCCcCCCCceEEEeCCCCCCCCCCCCC-C
Q 020486 217 VRVTVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYA--PNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLT-L 293 (325)
Q Consensus 217 ~RVTV~l~~~~~~~~~~~g~vVsp~~P~~~G~YWGY~VR~a--~sLs~vf~~~p~~~gYD~~IgTSerG~~i~~~~~~-l 293 (325)
+||||+|++.. +.+.+++|+|+ |+||||+||+| + |+++|++| |||++||||++|++++ ..+. +
T Consensus 138 ~RVTV~~~~~~---~~~~~~~V~p~-----~~YwGY~Vr~~~~~-l~~v~~~~----gyd~~I~TS~~G~~~~-~~l~~~ 203 (268)
T 1k3r_A 138 RIMSFRVVRLG---KEILIEPDEPE-----DRYWGYEVLDTRRN-LAESLKTV----GADVVVATSRNASPIT-SILDEV 203 (268)
T ss_dssp CEEEEEEEECS---SSCEEEECCCS-----SSCCCCEEEEEEEE-HHHHHHHH----CCSEEEEECTTSCBTT-TSHHHH
T ss_pred cEEEEEecCCC---ccceeEEcCCC-----CCccCeEEEEehhh-HHHHHhhc----CCCeEEEECCCCCCch-hccchh
Confidence 99999998542 34578999987 78999999999 8 99999999 7999999999999986 3322 2
Q ss_pred ----CCcchhhh
Q 020486 294 ----PTFRSMLG 301 (325)
Q Consensus 294 ----p~fkH~Li 301 (325)
.+|+|+||
T Consensus 204 ~~~~~~~~~~li 215 (268)
T 1k3r_A 204 KTRMRGAREAAI 215 (268)
T ss_dssp HHHHTTCSEEEE
T ss_pred hhcccCCCeEEE
Confidence 47999988
No 2
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=44.64 E-value=11 Score=32.10 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=26.2
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeCC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD~ 106 (325)
+|++.+++ .=+|-|+|+|..|+++.|++-...
T Consensus 14 vL~~~~dp----~N~Gai~Rta~a~G~~~l~lv~~~ 45 (173)
T 3kty_A 14 IMTQPSHP----GNVGSAARAIKTMGFGELVLVAPR 45 (173)
T ss_dssp EEESCCCH----HHHHHHHHHHHHTTCCCEEEESCS
T ss_pred EEeCCCCC----CcHHHHHHHHHHcCCCEEEEeCCC
Confidence 45677775 468999999999999999997654
No 3
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=44.33 E-value=13 Score=32.39 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=26.1
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD 105 (325)
+|++.+++. =+|-|+|+|..|+|+.|++-..
T Consensus 26 vLd~~~dp~----NlGaI~Rta~a~G~~~v~l~~~ 56 (194)
T 1v2x_A 26 LLENVHKPH----NLSAILRTCDAVGVLEAHAVNP 56 (194)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTBSEEEEESG
T ss_pred EEeCCCCcC----hHHHHHHHHHHhCCCEEEEeCC
Confidence 567778764 6899999999999999999754
No 4
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=42.79 E-value=14 Score=31.89 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=24.7
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEE
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVF 103 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVy 103 (325)
+|++.+++. =+|-|+|+|..|+++.|+|-
T Consensus 30 vLd~i~dp~----NlGaI~Rta~a~G~~~vil~ 58 (184)
T 2ha8_A 30 VASLIDKPT----NLGGLCRTCEVFGASVLVVG 58 (184)
T ss_dssp ECTTCCCHH----HHHHHHHHHHHTTCSEEEES
T ss_pred EEcCCCCCC----cHHHHHHHHHHhCCCEEEEC
Confidence 467778764 68999999999999999874
No 5
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=41.35 E-value=13 Score=32.84 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=26.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD 105 (325)
+|++.+++. =+|-|+|+|..|+|+.|++-..
T Consensus 29 vLd~i~dp~----NlGaI~Rta~a~G~~~v~lv~~ 59 (211)
T 1zjr_A 29 FADNVKNEH----NFSAIVRTCDAVGVLYLYYYHA 59 (211)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTEEEEEEECS
T ss_pred EEECCCCcC----cHHHHHHHHHHhCCCEEEEeCC
Confidence 467778864 6899999999999999999765
No 6
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=39.91 E-value=17 Score=33.07 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=26.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeCC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD~ 106 (325)
||.+.+++. =+|-|||+|..|+++.|++-+..
T Consensus 11 VL~~~~dP~----NiGai~Rta~a~G~~~l~lv~p~ 42 (244)
T 3ilk_A 11 VLIETSHSG----NIGSAARAMKTMGLTQLCLVSPK 42 (244)
T ss_dssp EEESCCSHH----HHHHHHHHHHHHTCCEEEEESCS
T ss_pred EEECCCCcC----hHHHHHHHHHHhCCCEEEEECCC
Confidence 456667754 68999999999999999998765
No 7
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=33.55 E-value=21 Score=32.44 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=26.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeCC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD~ 106 (325)
||.+.+++. =+|-|||+|.-|+++.+++-+..
T Consensus 8 VL~~~~dP~----NiGai~Rta~a~G~~~l~Lv~p~ 39 (249)
T 3onp_A 8 ILVRPQMGE----NIGAAARAMLNFGLGRLRIVDPR 39 (249)
T ss_dssp EEESCCCHH----HHHHHHHHHHHTTCCCEEEESCT
T ss_pred EEeCCCCCC----hHHHHHHHHHHcCCCEEEEeCCC
Confidence 456667754 68999999999999999998664
No 8
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=32.34 E-value=23 Score=29.90 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=22.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD 105 (325)
+|++.+++. =+|-|+|+|..|+++-| |...
T Consensus 8 vL~~~~dp~----NlGaI~Rta~a~G~~~v-iv~~ 37 (165)
T 3n4j_A 8 VLFEPEIPP----NTGNIIRLCANTGCQLH-LIKP 37 (165)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTCEEE-EESC
T ss_pred EEeCCCCCC----cHHHHHHHHHHcCCeEE-EECC
Confidence 456777754 68999999999999544 5544
No 9
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=31.29 E-value=25 Score=30.44 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=22.6
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEE
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVV 102 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVV 102 (325)
+|++.+++. =+|-|+|+|..|+++-|||
T Consensus 21 vLd~v~dP~----NlGaI~Rta~afG~~~viv 48 (182)
T 3l8u_A 21 VLFQPQIPA----NTGNIARTCAATNTSLHII 48 (182)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTCEEEEE
T ss_pred EEeCCCCcC----cHHHHHHHHHHcCCcEEEE
Confidence 567778864 6899999999999965555
No 10
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=30.17 E-value=27 Score=31.64 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=26.7
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeCC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD~ 106 (325)
+|++.+++ .=+|-|+|+|..|+|+.|++-.+.
T Consensus 107 vLd~v~dp----~NlGaI~Rta~a~G~~~vil~~~~ 138 (257)
T 2i6d_A 107 LLDGVQDP----GNVGTILRTADWFGIRHVWLGTGS 138 (257)
T ss_dssp EEESCCCH----HHHHHHHHHHHHHTCCEEEECTTC
T ss_pred EEECCCCc----chHHHHHHHHHHhCCCEEEEcCCC
Confidence 45777876 468999999999999999987654
No 11
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=29.78 E-value=28 Score=29.24 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=23.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeCC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD~ 106 (325)
+|++.+++. =+|-|+|+|..|+++ .||....
T Consensus 9 vLd~i~dp~----NlGaI~Rta~a~G~~-~viv~~~ 39 (160)
T 3e5y_A 9 VLVEPEIPP----NTGNVIRLCANTGAR-LHLIEPL 39 (160)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTCE-EEEESSC
T ss_pred EEeCCCCCC----cHHHHHHHHHHcCCc-EEEECCC
Confidence 467777764 689999999999995 5555443
No 12
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=29.43 E-value=25 Score=31.77 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=26.0
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeCC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD~ 106 (325)
||.+.+++ .=+|-|+|+|.-|+++.|++-...
T Consensus 21 VLd~~~dP----~NiGaI~Rta~afG~~~l~Lv~p~ 52 (223)
T 3ic6_A 21 ILTRTSHP----ANIGSAARAMKTMGLHRLTIVTPN 52 (223)
T ss_dssp EEESCCCH----HHHHHHHHHHHHTTCCCEEEESCC
T ss_pred EEeCCCCC----ChHHHHHHHHHHcCCCEEEEeCCC
Confidence 35666775 468999999999999999997654
No 13
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=28.48 E-value=30 Score=31.74 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=26.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD 105 (325)
+|++.|++ .=+|-|+|+|..|+|+.|++-..
T Consensus 120 vLd~i~dp----~NlGaI~Rta~a~G~~~vil~~~ 150 (274)
T 1ipa_A 120 VAVGLEKP----GNLGAVLRSADAAGAEAVLVAGG 150 (274)
T ss_dssp EEESCCCH----HHHHHHHHHHHHHTCSEEEEESC
T ss_pred EEeCCCCc----chHHHHHHHHHhhccCEEEEeCC
Confidence 45677776 46899999999999999999866
No 14
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=28.34 E-value=31 Score=31.22 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=25.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD 105 (325)
+|++.+++ .=+|-|+|+|..|+|+.||+-.+
T Consensus 109 vLd~v~dp----~NlGaI~Rta~a~G~~~vil~~~ 139 (253)
T 1gz0_A 109 ILDGVTDP----HNLGACLRSADAAGVHAVIVPKD 139 (253)
T ss_dssp EEESCCCH----HHHHHHHHHHHHHTCSEEEEESS
T ss_pred EEeCCCCc----CcHHHHHHHHHHhCCCEEEEeCC
Confidence 35677776 46899999999999999988654
No 15
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=26.68 E-value=34 Score=31.63 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=26.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEeCC
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVydD~ 106 (325)
+|++.|++ .=+|-|+|+|..|+|+.|++-...
T Consensus 130 vLd~i~dP----~NlGaIiRta~a~G~~~vil~~~~ 161 (287)
T 1x7o_A 130 LFDRPTSP----GNIGSIIRSADALGAHGLIVAGHA 161 (287)
T ss_dssp EEESCSCH----HHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEeCCCCc----chHHHHHHHhHhcccCEEEEECCC
Confidence 35666775 468999999999999999998764
No 16
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=25.03 E-value=38 Score=31.16 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=25.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEe
Q 020486 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFD 104 (325)
Q Consensus 71 IlsnaqslelkT~~aGqIARAaaIF~VDEIVVyd 104 (325)
+|++.+++ .=+|-|+|+|..|+|+.|++-.
T Consensus 123 vLd~v~dP----~NlGaI~Rta~a~G~~~vil~~ 152 (277)
T 3nk6_A 123 VLDGVKIV----GNIGAIVRTSLALGAAGIVLVD 152 (277)
T ss_dssp EEESCCCH----HHHHHHHHHHHHTTCSEEEEES
T ss_pred EEEcCCCc----chHHHHHHHHHHcCCCEEEEcC
Confidence 45667775 4689999999999999999987
No 17
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=23.26 E-value=2.1e+02 Score=20.69 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=33.4
Q ss_pred CcccceEEEEeeccCCCCCceEEEeCCCceeeec---------ccCCCCcEEEEEecC
Q 020486 177 EWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVD---------QVLDPGVRVTVAMGT 225 (325)
Q Consensus 177 e~~~yREGvVv~~~~~~g~gs~VdvGL~k~v~i~---------~~l~~g~RVTV~l~~ 225 (325)
..++.=+|.|..-. ..|.||+++-.....+. ..+.+|.+|.|++..
T Consensus 4 ~~G~iv~G~V~~v~---~~G~fV~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~ 58 (80)
T 2k52_A 4 EPGKFYKGVVTRIE---KYGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAID 58 (80)
T ss_dssp CTTCEEEEEEEEEE---TTEEEEEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEE
T ss_pred CCCCEEEEEEEEEe---CCEEEEEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEE
Confidence 35666788887764 57999999866544431 258899999999874
No 18
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=22.10 E-value=67 Score=28.43 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhcccEEEEEeCC
Q 020486 82 TRLAGQIARAVTIFRIDEVVVFDNK 106 (325)
Q Consensus 82 T~~aGqIARAaaIF~VDEIVVydD~ 106 (325)
.+-+|-||||+.-|++++.++-...
T Consensus 28 n~dihdiARamkt~Gl~~l~LV~P~ 52 (192)
T 3dcm_X 28 NLDVHDIARTARTYNLKGYYIVTNL 52 (192)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred cccHHHHHHHHHhcCCceEEEECCc
Confidence 4668999999999999999999654
Done!