BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020490
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/230 (53%), Positives = 165/230 (71%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
IL+G++L V+ GEVHAIMG NGSGKSTLS L G DYEVT G+V FKG++LL + PE+R
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT 213
+ G+FM+FQ PVEIPGV+N FL A NA R GQ + +F + K+ L M
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 135
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK 273
D L R+VN GFSGGE+KRN+ILQ+AVL +L ILDE DSGLD+DAL+ VA VN L K
Sbjct: 136 DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGK 195
Query: 274 NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAIS 323
S +++THY+R+L++IKP ++H++ GRI+K+GD ++ LEE GY ++
Sbjct: 196 RSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLT 245
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/237 (52%), Positives = 168/237 (70%)
Query: 87 IAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146
++ + IL+G++L V+ GEVHAIMG NGSGKSTLS L G DYEVT G+V FKG++LL
Sbjct: 28 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87
Query: 147 EMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
+ PE+R+ G+FM+FQ PVEIPGV+N FL A NA R GQ + +F + K+
Sbjct: 88 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 147
Query: 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV 266
L M D L R+VN GFSGGE+KRN+ILQ+AVL +L ILDE DSGLD+DAL+ VA V
Sbjct: 148 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207
Query: 267 NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAIS 323
N L K S +++THY+R+L++IKP ++H++ GRI+K+GD ++ LEE GY ++
Sbjct: 208 NSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLT 264
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/246 (50%), Positives = 169/246 (68%), Gaps = 6/246 (2%)
Query: 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
L++ L A I + ILKGVNL+V +GEVHA+MG NG+GKSTL K+L G P+Y V G
Sbjct: 4 LEIRDLWASI--DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGE 61
Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
++ GEN+LE+ P+ER+ GLF++FQ PVE+PGV +FL +A A KLG+ E+G E
Sbjct: 62 ILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQA---KLGR-EVGVAE 117
Query: 198 FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257
F+ + LE L +L+R +NEGFSGGE+KRNEILQL VL A+LDE DSGLD+D
Sbjct: 118 FWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDID 177
Query: 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG 317
AL+ VA+ VN + P L+ITHY+R+L +I+P +H+M DGR++ TG +A LE
Sbjct: 178 ALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAK 237
Query: 318 GYKAIS 323
GY+ +
Sbjct: 238 GYEWLK 243
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 33/229 (14%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
L GV++ VN+G+V I+G NGSGKSTL V+ G + EG V F+ +++ EP E
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY 80
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE------FYAYLYPKLER 208
G+ +FQ+P + + ++ L + EI P E FY PK E
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIG-----------EICPGESPLNSLFYKKWIPKEEE 129
Query: 209 LSMKT----DFL------NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
+ K +FL +R E SGG+ K EI + + + ++DE +G+
Sbjct: 130 MVEKAFKILEFLKLSHLYDRKAGE-LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 259 LRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTG 306
D+ V L + L+I H + L +I +++M +G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYID--HLYVMFNGQIIAEG 235
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 105/216 (48%), Gaps = 18/216 (8%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
L+ +NL + G+ A++G++GSGKST++ ++ Y++ EG ++ G +L E +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--YDIDEGEILMDGHDL-----REYT 411
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYN----ARRRKLGQPEIGPIEFYAYLYPKLERLS 210
LA S ++ V + N F N AR + + +I AY + ++
Sbjct: 412 LA----SLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467
Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
D + SGG+R+R I + + + + ILDE S LD ++ R + A++ L
Sbjct: 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
+ SL+ I H RL K I ++EDG I++ G
Sbjct: 528 KNRTSLV-IAH--RLSTIEKADEIVVVEDGVIVERG 560
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 33/229 (14%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
L GV++ VN+G+V I+G NGSGKSTL V+ G + EG V F+ +++ EP E
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY 80
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE------FYAYLYPKLER 208
G+ +FQ+P + + ++ L + EI P E FY PK E
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIG-----------EINPGESPLNSLFYKKWIPKEEE 129
Query: 209 LSMKT----DFL------NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
+ K +FL +R E SGG+ K EI + + + ++D+ +G+
Sbjct: 130 MVEKAFKILEFLKLSHLYDRKAGE-LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 259 LRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTG 306
D+ V L + L+I H + L +I +++M +G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYID--HLYVMFNGQIIAEG 235
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 18/219 (8%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
L+ +NL + G+ A++G++GSGKST++ ++ Y++ EG ++ G +L E +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--YDIDEGHILMDGHDL-----REYT 411
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYN----ARRRKLGQPEIGPIEFYAYLYPKLERLS 210
LA S ++ V + N F N AR + + +I AY + ++
Sbjct: 412 LA----SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD 467
Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
D + SGG+R+R I + + + + ILDE S LD ++ R + A++ L
Sbjct: 468 NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
+ SL+ I H RL + I ++EDG I++ G S
Sbjct: 528 KNRTSLV-IAH--RLSTIEQADEIVVVEDGIIVERGTHS 563
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 33/229 (14%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
L GV++ V +G+V I+G NGSGKSTL V+ G + EG V F+ +++ EP E
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY 80
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE------FYAYLYPKLER 208
G+ +FQ+P + + ++ L + EI P E FY PK E
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIG-----------EINPGESPLNSLFYKKWIPKEEE 129
Query: 209 LSMKT----DFL------NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
+ K +FL +R E SGG+ K EI + + + ++DE +G+
Sbjct: 130 MVEKAFKILEFLKLSHLYDRKAGE-LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 259 LRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTG 306
D+ V L + L+I H + L +I +++M +G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYID--HLYVMFNGQIIAEG 235
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 13/191 (6%)
Query: 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
+++ L+ V+L++NEGE + G GSGKSTL +++ G E T G V++ GE +
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEPTSGDVLYDGER--KKGY 74
Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
E R G+ +FQ P + + F +A+ + P+ P+ + +E +
Sbjct: 75 EIRRNIGI--AFQYPEDQFFAERV-FDEVAFAVKN---FYPDRDPV---PLVKKAMEFVG 125
Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
+ D V SGGE++R I + V D+ ILDE GLD + D+ + V
Sbjct: 126 LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 271 TPKNSLLMITH 281
T ++++I+H
Sbjct: 186 TLGKTVILISH 196
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 13/191 (6%)
Query: 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
+++ L+ V+L++NEGE + G GSGKSTL +++ G E T G V++ GE +
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEPTSGDVLYDGER--KKGY 76
Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
E R G+ +FQ P + + F +A+ + P+ P+ + +E +
Sbjct: 77 EIRRNIGI--AFQYPEDQFFAERV-FDEVAFAVKN---FYPDRDPV---PLVKKAMEFVG 127
Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
+ D V SGGE++R I + V D+ ILDE GLD + D+ + V
Sbjct: 128 LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 187
Query: 271 TPKNSLLMITH 281
T ++++I+H
Sbjct: 188 TLGKTVILISH 198
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 18/221 (8%)
Query: 89 ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
++ LK +N + G A++G GSGKST++K+L D EG + G+N+ +
Sbjct: 30 QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---AEGDIKIGGKNVNKY 86
Query: 149 EPEE-RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG--QPEIGPIEFYAYLYPK 205
RS+ G+ P + N + YN KL E+ A LY
Sbjct: 87 NRNSIRSIIGIV-----PQDTILFNET----IKYNILYGKLDATDEEVIKATKSAQLYDF 137
Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
+E L K D + N SGGER+R I + + + I DE S LD KA
Sbjct: 138 IEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA 197
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
V L + +L++I H RL I ++ G+I++ G
Sbjct: 198 VEDLRKNR-TLIIIAH--RLSTISSAESIILLNKGKIVEKG 235
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
IL +NL + +GEV I+G++GSGKSTL+K++ Y G V+ G +L +P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
R G+ + + ++NI + + + + + A L + +S
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 125
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKA 265
+ N V E G SGG+R+R I + V + I DE S LD ++ +R++ K
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
G ++++I H RL I +ME G+I++ G
Sbjct: 186 CKG-----RTVIIIAH--RLSTVKNADRIIVMEKGKIVEQG 219
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
IL +NL + +GEV I+G++GSGKSTL+K++ Y G V+ G +L +P
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
R G+ + + ++NI + + + + + A L + +S
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 127
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKA 265
+ N V E G SGG+R+R I + V + I DE S LD ++ +R++ K
Sbjct: 128 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 187
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
G ++++I H RL I +ME G+I++ G
Sbjct: 188 CKG-----RTVIIIAH--RLSTVKNADRIIVMEKGKIVEQG 221
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
IL +NL + +GEV I+G++GSGKSTL+K++ Y G V+ G +L +P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
R G+ + + ++NI + + + + + A L + +S
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 131
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKA 265
+ N V E G SGG+R+R I + V + I DE S LD ++ +R++ K
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
G ++++I H RL I +ME G+I++ G
Sbjct: 192 CKG-----RTVIIIAH--RLSTVKNADRIIVMEKGKIVEQG 225
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 27/221 (12%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
IL +NL + +GEV I+G+ GSGKSTL+K++ Y G V+ G +L +P
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
R G+ + + ++NI + + + + + A L + +S
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 127
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKA 265
+ N V E G SGG+R+R I + V + I DE S LD ++ +R++ K
Sbjct: 128 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 187
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
G ++++I H RL I +ME G+I++ G
Sbjct: 188 CKG-----RTVIIIAH--RLSTVKNADRIIVMEKGKIVEQG 221
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
IL +NL + +GEV I+G++GSGKSTL+K++ Y G V+ G +L +P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
R G+ + + ++NI + + + + + A L + +S
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 131
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKA 265
+ N V E G SGG+R+R I + V + I D+ S LD ++ +R++ K
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKI 191
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
G ++++I H RL I +ME G+I++ G
Sbjct: 192 CKG-----RTVIIIAH--RLSTVKNADRIIVMEKGKIVEQG 225
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 19/217 (8%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
IL +NL + +GEV I+G++GSGKSTL+K++ Y G V+ G +L +P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
R G+ + + ++NI + + + + + A L + +S
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 125
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
+ N V E G SGG+R+R I + V + I DE S LD ++ + + ++ +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
+ +++ RL I +ME G+I++ G
Sbjct: 186 CKGRTVIIIAA---RLSTVKNADRIIVMEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 19/217 (8%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
IL +NL + +GEV I+G++GSGKSTL+K++ Y G V+ G +L +P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
R G+ + + ++NI + + + + + A L + +S
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 131
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
+ N V E G SGG+R+R I + V + I DE S LD ++ + + ++ +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
+ +++ RL I +ME G+I++ G
Sbjct: 192 CKGRTVIIIAA---RLSTVKNADRIIVMEKGKIVEQG 225
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 16/214 (7%)
Query: 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
EILKG++L V +GE +I+G +GSGKSTL +L G D TEG V +G+ + +E
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP-TEGKVFLEGKEVDYTNEKE 75
Query: 153 RSL---AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
SL L FQ IP + ++ + + K+G+P+ E YL +L
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPM----LKMGKPKKEAKERGEYLLSELGL- 130
Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
D L+R E SGGE++R I + L DE LD + V +
Sbjct: 131 ---GDKLSRKPYE-LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303
S++M+TH R L E T M+DG+++
Sbjct: 187 NEGGTSIVMVTHERELAELTHRTL--EMKDGKVV 218
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 19/187 (10%)
Query: 98 VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157
+NL + +GE ++G +G GK+T +++ G E TEG + F ++ + P++R+++
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE--EPTEGRIYFGDRDVTYLPPKDRNISM 87
Query: 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN 217
+F S+ + NI A+ + +K + EI +A ++E L LN
Sbjct: 88 VFQSYAVWPHMTVYENI-----AFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 136
Query: 218 RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD---ALRDVAKAVNGLLTPKN 274
R + SGG+R+R + + V+ D+ ++DE S LD A+R K + L K
Sbjct: 137 RYPAQ-LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL--KV 193
Query: 275 SLLMITH 281
+ + +TH
Sbjct: 194 TTIYVTH 200
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 139/295 (47%), Gaps = 46/295 (15%)
Query: 48 SLNRVTAALSAVDSPLKSSSDGQDEK----SQPL------LQVTGLTAVIAESKQEILKG 97
S +T + +++D + + D K +QP+ + + ++ +++ ILK
Sbjct: 300 SFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKD 359
Query: 98 VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLEMEPEERSLA 156
+NL + +GE A +G +G GKSTL ++ P Y+VT G ++ G N+ + L
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLI---PRFYDVTSGQILIDGHNIKDF------LT 410
Query: 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFL 216
G S ++ + + +NI F LG+P E + +++ DF+
Sbjct: 411 G---SLRNQIGLVQQDNILFSDTV--KENILLGRPTATDEEVV-----EAAKMANAHDFI 460
Query: 217 NRNVNEGF-----------SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
N+ +G+ SGG+++R I ++ + + ILDE S LD+++ + +A
Sbjct: 461 -MNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320
++ +L+ + L++ H RL I ++E+G I++TG + ++G Y+
Sbjct: 520 LD-VLSKDRTTLIVAH--RLSTITHADKIVVIENGHIVETGTHR-ELIAKQGAYE 570
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 19/187 (10%)
Query: 98 VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157
+NL + +GE ++G +G GK+T +++ G E TEG + F ++ + P++R+++
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE--EPTEGRIYFGDRDVTYLPPKDRNISM 88
Query: 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN 217
+F S+ + NI A+ + +K + EI +A ++E L LN
Sbjct: 89 VFQSYAVWPHMTVYENI-----AFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 137
Query: 218 RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD---ALRDVAKAVNGLLTPKN 274
R + SGG+R+R + + V+ D+ ++DE S LD A+R K + L K
Sbjct: 138 RYPAQ-LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL--KV 194
Query: 275 SLLMITH 281
+ + +TH
Sbjct: 195 TTIYVTH 201
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 28/223 (12%)
Query: 91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
K+EILKG++ + EGE+ ++G NG+GK+T +++ + + G V G+N++E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRII--STLIKPSSGIVTVFGKNVVEEPH 84
Query: 151 EERSL-------AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLY 203
E R L AG + + Q G+ + F+ Y + ++ + E
Sbjct: 85 EVRKLISYLPEEAGAYRNMQ------GIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE 138
Query: 204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263
+R+S +S G ++ I + ++ LAILDE SGLDV R+V
Sbjct: 139 KIKDRVST------------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
K + ++L+ +H +EF+ I ++ +G I++TG
Sbjct: 187 KILKQASQEGLTILVSSHNMLEVEFLCDR-IALIHNGTIVETG 228
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL----LEM 148
E+LKG+N+ + EGEV ++G +GSGKST + L D++ EG ++ G NL +
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINLKAKDTNL 74
Query: 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
+ +F F + +NNI M R+ + E +E L++
Sbjct: 75 NKVREEVGMVFQRFNLFPHMTVLNNITLAPM--KVRKWPREKAEAKAMEL-------LDK 125
Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
+ +K + SGG+ +R I + + + + DE S LD + + +V +
Sbjct: 126 VGLKDK--AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 269 LLTPKNSLLMITH 281
L +++++TH
Sbjct: 184 LANEGMTMVVVTH 196
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 18/218 (8%)
Query: 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL----LEM 148
E+LKG+N+ + EGEV ++G +GSGKST + L D++ EG ++ G NL +
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINLKAKDTNL 95
Query: 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
+ +F F + +NNI M R+ + E +E L++
Sbjct: 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPRE--KAEAKAMEL-------LDK 146
Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
+ +K + SGG+ +R I + + + + DE S LD + + +V +
Sbjct: 147 VGLKDK--AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
L +++++TH + + M+ G II+ G
Sbjct: 205 LANEGMTMVVVTHEMGFAREVGDRVL-FMDGGYIIEEG 241
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
L V+ + +G+ A++G++GSGKST++ + Y+V GS+ G ++ + + +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF--YDVDSGSICLDGHDVRDYKLT--N 414
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD 214
L F V + N+ ++AY A + + +I A+ +E + D
Sbjct: 415 LRRHFALVSQNVHL--FNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLD 471
Query: 215 FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN 274
+ SGG+R+R I + + A + ILDE S LD ++ R + A++ L K
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK- 530
Query: 275 SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
++L+I H RL + I ++++G II+ G
Sbjct: 531 TVLVIAH--RLSTIEQADEILVVDEGEIIERG 560
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
L +NL + +GE A++G +GSGKSTL + G Y+ T G + F +++ E+ P++R+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI--YKPTSGKIYFDEKDVTELPPKDRN 76
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD 214
+ +F ++ + NI F A R ++ + ++ ++
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----------VREVAKMLHIDK 125
Query: 215 FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
LNR + SGG+++R I + V ++ +LDE S LD
Sbjct: 126 LLNRYPWQ-LSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 104/215 (48%), Gaps = 13/215 (6%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+L+G++L V +G+ A++G +G GKST+ ++L Y+ GSV G+ + ++ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
A L + Q P+ + NI AY R + EI A ++ ++ L
Sbjct: 1106 R-AQLGIVSQEPILFDCSIAENI-----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
K + + SGG+++R I + V + +LDE S LD ++ + V +A++
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 272 PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
+ + ++I H RL I ++++G++ + G
Sbjct: 1220 GR-TCIVIAH--RLSTIQNADLIVVIQNGKVKEHG 1251
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
+ILKG+NL V G+ A++G +G GKST +++ Y+ +G V G+++ +
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 153 -RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR--RRKLGQPEIGPIEFYAYLYPKLERL 209
R + G+ Q PV +A N R R + EI A Y + +L
Sbjct: 462 LREIIGVVS--QEPVLFATT-------IAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
+ D L SGG+++R I + V + +LDE S LD ++ V A++
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
+ +++ I H RL I + G I++ G+
Sbjct: 573 REGRTTIV-IAH--RLSTVRNADVIAGFDGGVIVEQGN 607
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 104/215 (48%), Gaps = 13/215 (6%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+L+G++L V +G+ A++G +G GKST+ ++L Y+ GSV G+ + ++ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
A L + Q P+ + NI AY R + EI A ++ ++ L
Sbjct: 1106 R-AQLGIVSQEPILFDCSIAENI-----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
K + + SGG+++R I + V + +LDE S LD ++ + V +A++
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 272 PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
+ + ++I H RL I ++++G++ + G
Sbjct: 1220 GR-TCIVIAH--RLSTIQNADLIVVIQNGKVKEHG 1251
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
+ILKG+NL V G+ A++G +G GKST +++ Y+ +G V G+++ +
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 153 -RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR--RRKLGQPEIGPIEFYAYLYPKLERL 209
R + G+ Q PV +A N R R + EI A Y + +L
Sbjct: 462 LREIIGVVS--QEPVLFATT-------IAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
+ D L SGG+++R I + V + +LDE S LD ++ V A++
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
+ +++ I H RL I + G I++ G+
Sbjct: 573 REGRTTIV-IAH--RLSTVRNADVIAGFDGGVIVEQGN 607
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
+ +GEV I+G NG GK+T K+L G E TEG V + + + + G
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 436
Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221
S ++ +N+ N + +L +P +G I+ Y +RNV
Sbjct: 437 LLSKIDSSKLNS--------NFYKTELLKP-LGIIDLY-----------------DRNV- 469
Query: 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMIT 280
E SGGE +R I + AD+ +LDE + LDV+ V++A+ L+ + + L++
Sbjct: 470 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529
Query: 281 HYRRLLEFIKPTFI 294
H +++++ I
Sbjct: 530 HDVLMIDYVSDRLI 543
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 26/206 (12%)
Query: 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH------PDYEVTEGSV-VFKGENLLEMEPEER 153
+V +G V I+G NG+GK+T K+L G D + + + F+G L +
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL------QN 166
Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYLYPKLERLSM 211
L PV P +D L A + R+L + E+G + ++ +
Sbjct: 167 YFERLKNGEIRPVVKP--QYVDLLPKAVKGKVRELLKKVDEVGK-------FEEVVKELE 217
Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
+ L+R +++ SGGE +R I + A DE S LD+ VA+ + L
Sbjct: 218 LENVLDRELHQ-LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 272 PKNSLLMITHYRRLLEFIKPTFIHIM 297
++L++ H +L+++ IH++
Sbjct: 277 EGKAVLVVEHDLAVLDYLSDV-IHVV 301
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 21/219 (9%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE-- 151
IL+G+NL VN G+ A++G +G GKST+ +L+ + Y+V +G + G ++ ++ E
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY--YDVLKGKITIDGVDVRDINLEFL 490
Query: 152 ERSLAGLFMS---FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
+++A + F +E NI L R + ++ E + P
Sbjct: 491 RKNVAVVSQEPALFNCTIE----ENIS-LGKEGITREEMVAACKMANAEKFIKTLPN--- 542
Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
T +R SGG+++R I + V + +LDE S LD ++ V +A++
Sbjct: 543 -GYNTLVGDRGTQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599
Query: 269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
+ +++ I H RL I ++G++++ GD
Sbjct: 600 AAKGRTTII-IAH--RLSTIRNADLIISCKNGQVVEVGD 635
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 24/238 (10%)
Query: 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
EILKG++ V G+ A++G +G GKST+ +L Y+ G + G + + PE
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEH 1150
Query: 153 -RSLAGLFMSFQSPVEIPGVNNIDF------LHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
RS + + + NI + + MA +L F A L
Sbjct: 1151 TRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIH----NFIAELPEG 1206
Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
E T +R SGG+++R I + V + +LDE S LD ++ + V +A
Sbjct: 1207 FE-----TRVGDRGTQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAIS 323
++ + + ++I H RL + I ++ +G II+ G + + E+G Y ++
Sbjct: 1260 LDRAREGR-TCIVIAH--RLNTVMNADCIAVVSNGTIIEKGTHT-QLMSEKGAYYKLT 1313
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
+ +GEV I+G NG GK+T K+L G E TEG V + + + + G
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 422
Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221
S ++ +N+ N + +L +P +G I+ Y +RNV
Sbjct: 423 LLSKIDSSKLNS--------NFYKTELLKP-LGIIDLY-----------------DRNV- 455
Query: 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMIT 280
E SGGE +R I + AD+ +LDE + LDV+ V++A+ L+ + + L++
Sbjct: 456 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 515
Query: 281 HYRRLLEFIKPTFI 294
H +++++ I
Sbjct: 516 HDVLMIDYVSDRLI 529
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH------PDYEVTEGSV-VFKGENLLEMEPEER 153
+V +G V I+G NG+GK+T K+L G D + + + F+G L ER
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNY--FER 156
Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYLYPKLERLSM 211
G P +D L A + R+L + E+G + ++ +
Sbjct: 157 LKNGEIRPVVKP------QYVDLLPKAVKGKVRELLKKVDEVGK-------FEEVVKELE 203
Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
+ L+R +++ SGGE +R I + A DE S LD+ VA+ + L
Sbjct: 204 LENVLDRELHQ-LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 262
Query: 272 PKNSLLMITHYRRLLEFIKPTFIHIM 297
++L++ H +L+++ IH++
Sbjct: 263 EGKAVLVVEHDLAVLDYLSDV-IHVV 287
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 33/179 (18%)
Query: 104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT--EGSVVFKGENLLEMEPEERSLAGLFMS 161
EGE+ I+G NG GK+T +++LVG E+T EGSV + + +L +P+ +F +
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVG----EITADEGSVTPE-KQILSYKPQR-----IFPN 342
Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL-ERLSMKTDFLNRNV 220
+ V+ +L NA + L ++ + ++ +RL++ L NV
Sbjct: 343 YDGTVQ-------QYLE---NASKDALSTS--------SWFFEEVTKRLNLHR-LLESNV 383
Query: 221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI 279
N+ SGGE ++ I ADL +LD+ S LDV+ VAKA+ + + ++ I
Sbjct: 384 ND-LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 11/193 (5%)
Query: 107 VHAIMGKNGSGKSTLSKVLVGH--PDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQS 164
+ ++GKNG GK+T+ K+L G P++ S V K E L +E + F S
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFG-DPNSKVGKDEVLKRFRGKE--IYNYFKELYS 83
Query: 165 PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF 224
E+ V+ I ++ A + + + + I+ E L+M T+ N++ N
Sbjct: 84 N-ELKIVHKIQYVEYASKFLKGTVNEI-LTKIDERGKKDEVKELLNM-TNLWNKDANI-L 139
Query: 225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR 284
SGG +R + + AD+ I D+ S LDV ++AKA+ LL K ++++ H
Sbjct: 140 SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNK-YVIVVDHDLI 198
Query: 285 LLEFIKPTFIHIM 297
+L+++ IHI+
Sbjct: 199 VLDYL-TDLIHII 210
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 25/216 (11%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYEVTEGSVVFKGENLLEMEPEE 152
L ++L V GE I+G G+GK+ +++ G PD G ++ G+++ ++ PE+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD----SGRILLDGKDVTDLSPEK 71
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
+A ++ ++ + N++F R +K+ P+ ++ L K+E L
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEF-----GMRMKKIKDPK-RVLDTARDL--KIEHL--- 120
Query: 213 TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP 272
L+RN SGGE++R + + V + +LDE S LD ++ A+ + +L
Sbjct: 121 ---LDRN-PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT-QENAREMLSVLHK 175
Query: 273 KNSL--LMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
KN L L ITH + I I ++ DG++I+ G
Sbjct: 176 KNKLTVLHITHDQTEAR-IMADRIAVVMDGKLIQVG 210
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEE 152
++GV+ + EGE+ ++G +GSGK+T+ +++ G P T+G V G+ + ++ P++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP----TKGDVWIGGKRVTDLPPQK 86
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
R++ +F ++ + +N+ F R +++ + E+ + +LE
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSF-----GLREKRVPKDEMDARVRELLRFMRLE----- 136
Query: 213 TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262
+ NR +E SGG+++R + + + + DE + +D R++
Sbjct: 137 -SYANRFPHE-LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 77 LLQVTGLTAV--IAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYE 132
+++V L AV + E + G++L + E V AI+G++ SGKST+ + + P+
Sbjct: 4 IIRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGR 63
Query: 133 VTEGSVVFKGENLLEMEPEE------RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186
+ G V++KG++LL M EE + +A + + Q + P + I+ A
Sbjct: 64 ILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLN-PTMKVIEHFKDTVEAHGV 122
Query: 187 KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAI 246
+ E+ IE + KL + + + + + SGG ++R I +L + I
Sbjct: 123 RWSHSEL--IEKAS---EKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLI 177
Query: 247 LDEIDSGLDV 256
LDE S LDV
Sbjct: 178 LDEPTSALDV 187
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 102/218 (46%), Gaps = 17/218 (7%)
Query: 92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM-EP 150
+E L+ V+ V G+ A++G +G+GKST+ ++L Y+++ G + G+++ ++ +
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF--YDISSGCIRIDGQDISQVTQA 124
Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL- 209
RS G+ P + N+ ++ Y R G E+ A ++ +
Sbjct: 125 SLRSHIGVV-----PQDTVLFNDTIADNIRYG--RVTAGNDEVEAAAQAAGIHDAIMAFP 177
Query: 210 -SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
+T R + SGGE++R I + + + +LDE S LD R + ++
Sbjct: 178 EGYRTQVGERGLK--LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235
Query: 269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
+ + +++ + H RL + I +++DG I++ G
Sbjct: 236 VCANRTTIV-VAH--RLSTVVNADQILVIKDGCIVERG 270
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 17/190 (8%)
Query: 76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
P ++V L + K + GV+ V +GE A++G +G GK+T +L G Y+ T
Sbjct: 2 PSIRVVNLKKYFGKVKA--VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI--YKPTS 57
Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195
G + F + ++ P+ R + M FQ+ P + F ++A+ R R++ + E+
Sbjct: 58 GEIYFDDVLVNDIPPKYREVG---MVFQNYALYPHMTV--FENIAFPLRARRISKDEV-- 110
Query: 196 IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
++ R + + L+R + SGG+++R + + V + + DE S LD
Sbjct: 111 ----EKRVVEIARKLLIDNLLDRKPTQ-LSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 256 VDALRDVAKA 265
+ LR + +A
Sbjct: 166 AN-LRMIMRA 174
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 96 KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155
K +NL ++EGE +G +G GKSTL +++ G +T G + + + + P ER +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYLYPKLERLSMKT 213
+F S+ + N+ F A++ + Q ++ + A+L
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL----------- 126
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
L+R + SGG+R+R I + V + +LDE S LD ALR
Sbjct: 127 --LDRK-PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALR 169
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 96 KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155
K +NL ++EGE +G +G GKSTL +++ G +T G + + + + P ER +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYLYPKLERLSMKT 213
+F S+ + N+ F A++ + Q ++ + A+L
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL----------- 126
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
L+R + SGG+R+R I + V + +LDE S LD ALR
Sbjct: 127 --LDRK-PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALR 169
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
LKG+N+ + GEV AI+G NG GKSTL + G + + G ++F + +P + S
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--LKPSSGRILF------DNKPIDYS 75
Query: 155 LAGLF-------MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE 207
G+ + FQ P ++ + +++ A KL + EI A +E
Sbjct: 76 RKGIMKLRESIGIVFQDPDNQLFSASV-YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE 134
Query: 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVN 267
L K S G++KR I + V+ + ILDE +GLD + ++ K +
Sbjct: 135 HLKDKP-------THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV 187
Query: 268 GLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
+ ++I + + + + +M++GR+I G+
Sbjct: 188 EMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 96 KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155
K +NL ++EGE +G +G GKSTL +++ G +T G + + + + P ER +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYLYPKLERLSMKT 213
+F S+ + N+ F A++ + Q ++ + A+L
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL----------- 126
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
L+R + SGG+R+R I + V + +LD+ S LD ALR
Sbjct: 127 --LDRK-PKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALR 169
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 15/233 (6%)
Query: 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
++L+G+ + G+V A++G NGSGKST++ +L Y+ T G V+ GE L++ +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFL-HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
L + + P + F ++AY R + EI + + + +
Sbjct: 91 -----LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME-EITAVAMESGAHDFISGFPQ 144
Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV-DALRDVAKAVNGLL 270
D SGG+R+ + + + L ILD+ S LD + LR
Sbjct: 145 GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPE 204
Query: 271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG-YKAI 322
++L+ITH L E + I +++G + + G + ++E GG Y+++
Sbjct: 205 WASRTVLLITHQLSLAE--RAHHILFLKEGSVCEQG--THLQLMERGGCYRSM 253
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 32/201 (15%)
Query: 105 GEVHAIMGKNGSGKSTLSKVLVGH-----------PDYEVTEGSVVFKGENLLEMEPEER 153
G+V ++G NG GKST K+L G P+++ E F+G L +
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQ--EIIKYFRGSEL-----QNY 155
Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ-----PEIGPIEFYAYLYPKLER 208
L ++ ++ V+NI A +K+G+ E P + Y+ +
Sbjct: 156 FTKMLEDDIKAIIKPQYVDNIP---RAIKGPVQKVGELLKLRMEKSPEDVKRYI-----K 207
Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
+ + L R++ E SGGE +R I V AD+ + DE S LDV + A+ +
Sbjct: 208 ILQLENVLKRDI-EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
Query: 269 LLTPKNSLLMITHYRRLLEFI 289
LL P ++ + H +L+++
Sbjct: 267 LLAPTKYVICVEHDLSVLDYL 287
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 47/199 (23%)
Query: 103 NEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEERSLAGLFM 160
++ E+ +MG+NG+GK+TL K+L G PD EG + K + M+P++ +A F
Sbjct: 376 SDSEILVMMGENGTGKTTLIKLLAGALKPD----EGQDIPKLN--VSMKPQK--IAPKF- 426
Query: 161 SFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK----TDFL 216
PG F ++ GQ +L P+ + +K D +
Sbjct: 427 --------PGTVRQLFF-------KKIRGQ----------FLNPQFQTDVVKPLRIDDII 461
Query: 217 NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG-LLTPKNS 275
++ V + SGGE +R I+ + AD+ ++DE + LD + +K + +L K +
Sbjct: 462 DQEV-QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520
Query: 276 LLMITHYRRLLEFIKPTFI 294
++ H +FI T++
Sbjct: 521 AFIVEH-----DFIMATYL 534
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
+ +GEV I+G NG GK+T K L G E TEG + + + + + G
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVE--EPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221
S ++ +N+ N + +L +P +G I+ Y +R VN
Sbjct: 367 LLSKIDASKLNS--------NFYKTELLKP-LGIIDLY-----------------DREVN 400
Query: 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMIT 280
E SGGE +R I + AD+ +LDE + LDV+ V++A+ L + + L++
Sbjct: 401 E-LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVE 459
Query: 281 H 281
H
Sbjct: 460 H 460
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 26/206 (12%)
Query: 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH------PDYEVTEGSV-VFKGENLLEMEPEER 153
+V EG V I+G NG+GKST K+L G D + +G + F+G L +
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL------QN 96
Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYLYPKLERLSM 211
L PV P +D + A + +L + E G +E ++ L +
Sbjct: 97 YFEKLKNGEIRPVVKP--QYVDLIPKAVKGKVIELLKKADETGKLE------EVVKALEL 148
Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
+ + L R + SGGE +R I + A DE S LD+ + A+A+ L
Sbjct: 149 E-NVLEREIQH-LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 272 PKNSLLMITHYRRLLEFIKPTFIHIM 297
S+L++ H +L+++ IH++
Sbjct: 207 EGKSVLVVEHDLAVLDYLS-DIIHVV 231
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 32/214 (14%)
Query: 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV 139
V ++ V + K L VN+ + GE I+G +G+GK+T +++ G +V +
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG---LDVPSTGEL 62
Query: 140 FKGENL------LEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
+ + L L + PE+R + M FQ+ P N F ++A+ K+ + EI
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIG---MVFQTWALYP--NLTAFENIAFPLTNMKMSKEEI 117
Query: 194 GPIEFYAYLYPKLERLSMKTDF---LNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250
++E ++ D LN E SGG+++R + + V L +LDE
Sbjct: 118 ---------RKRVEEVAKILDIHHVLNHFPRE-LSGGQQQRVALARALVKDPSLLLLDEP 167
Query: 251 DSGLDV---DALRDVAKAVNGLLTPKNSLLMITH 281
S LD D+ R + K V L +LL+++H
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGV--TLLVVSH 199
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 22/224 (9%)
Query: 89 ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
+ ++IL+ ++ + A G +G GKST+ +L Y+ T G + G+ + +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 149 EPEE-RSLAGLFMSFQSPVEIPGV-NNIDF-LHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
E RS G F+S S + + N+ + L Y ++ + A+
Sbjct: 70 SLENWRSQIG-FVSQDSAIMAGTIRENLTYGLEGDYT-------DEDLWQVLDLAFARSF 121
Query: 206 LERLSMKTDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262
+E + D LN V E SGG+R+R I + + + +LDE + LD ++ V
Sbjct: 122 VENMP---DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
KA++ L+ + +L+ I H RL + I+ +E G+I +G
Sbjct: 179 QKALDSLMKGRTTLV-IAH--RLSTIVDADKIYFIEKGQITGSG 219
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 49/260 (18%)
Query: 71 DEKSQPLLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV--LV 126
D+ + +++++ +T V + + I L V+L V G+++ ++G +G+GKSTL + L+
Sbjct: 18 DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 127 GHPDYEVTEGSVVFKGENLLEMEPEERSLA--GLFMSFQSPVEIPGVNNIDFLHMAYNAR 184
P TEGSV+ G+ L + E + A + M FQ H +
Sbjct: 78 ERP----TEGSVLVDGQELTTLSESELTKARRQIGMIFQ--------------HFNLLSS 119
Query: 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFL--------NRNVNEGFSGGERKRNEILQ 236
R G + P+E PK E T+ L + + SGG+++R I +
Sbjct: 120 RTVFGNVAL-PLELDN--TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR 176
Query: 237 LAVLGADLAILDEIDSGLD-------VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI 289
+ + D+ S LD ++ L+D+ + + GL ++L+ITH +++ I
Sbjct: 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GL-----TILLITHEMDVVKRI 230
Query: 290 KPTFIHIMEDGRIIKTGDAS 309
+ ++ +G +I+ S
Sbjct: 231 CDC-VAVISNGELIEQDTVS 249
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 32/179 (17%)
Query: 90 SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
+Q ++ V+L + GE+ AI+G NG+GKSTL ++L G+ + G G+NL +
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY--LSPSHGECHLLGQNLNSWQ 79
Query: 150 PEERSLAGLFMSFQSPVEIP-GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
P+ + M S + P V+ + + A P G + A L++
Sbjct: 80 PKALARTRAVMRQYSELAFPFSVSEVIQMGRA----------PYGGSQDRQA-----LQQ 124
Query: 209 LSMKTDF--LNRNVNEGFSGGERKRNEILQLAVLGADLA---------ILDEIDSGLDV 256
+ +TD L + SGGE++R +QLA + A L LDE S LD+
Sbjct: 125 VMAQTDCLALAQRDYRVLSGGEQQR---VQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
I + +L + G V A++G +GSGKST+ +L+ Y+ G++ G ++ ++ P
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL--YDPASGTISLDGHDIRQLNPVWL 416
Query: 153 RSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
RS G Q P+ NI AY A P A ++ ++
Sbjct: 417 RSKIGTVS--QEPILFSCSIAENI-----AYGAD---------DPSSVTAEEIQRVAEVA 460
Query: 211 MKTDFLNRNVNEGF-----------SGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 259
F+ RN +GF SGG+++R I + + + +LDE S LD +
Sbjct: 461 NAVAFI-RNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENE 519
Query: 260 RDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
V +A++ L+ + ++L+I H RL + +++ G+I + G
Sbjct: 520 YLVQEALDRLMDGR-TVLVIAH--RLSTIKNANMVAVLDQGKITEYG 563
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 32/234 (13%)
Query: 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
+ V T A S L G+ + EG + A++G+ G GKS+L L+ D EG
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGH 61
Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
V KG + P++ + + NI F +L +P +
Sbjct: 62 VAIKGS--VAYVPQQAWIQNDSLR----------ENILF--------GCQLEEPYYRSVI 101
Query: 198 FYAYLYPKLERLSM--KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
L P LE L +T+ + VN SGG+++R + + AD+ + D+ S +D
Sbjct: 102 QACALLPDLEILPSGDRTEIGEKGVN--LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
Query: 256 VDALRDVAKAV---NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
+ + + V G+L K +L +TH L + I +M G+I + G
Sbjct: 160 AHVGKHIFENVIGPKGMLKNKTRIL-VTHSMSYLPQVD--VIIVMSGGKISEMG 210
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+LK +NL + +GE+ AI G GSGK++L +++G + E +EG + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG--ELEASEGIIKHSGR---------- 100
Query: 154 SLAGLFMSFQSPVE--IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
+SF S +PG + + ++Y+ R K + L + + +
Sbjct: 101 ------VSFCSQFSWIMPGTIKENIIGVSYDEYRYK-------SVVKACQLQQDITKFAE 147
Query: 212 KTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA-VN 267
+ N + EG SGG+R R + + ADL +LD LDV V ++ V
Sbjct: 148 QD---NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 204
Query: 268 GLLTPKNSLLMITHYRRLLEFIKPTFIH 295
L+ K +L+ + L + K +H
Sbjct: 205 KLMANKTRILVTSKMEHLRKADKILILH 232
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 14/216 (6%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+L+G+ + GEV A++G NGSGKST++ +L Y+ T G ++ G+ L + E R
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL--YQPTGGQLLLDGKPLPQY--EHR 87
Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT 213
L + ++ G + + ++AY ++ + EI + + + L
Sbjct: 88 YLHRQVAAVGQEPQVFGRSLQE--NIAYGLTQKPTME-EITAAAVKSGAHSFISGLPQGY 144
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK 273
D SGG+R+ + + + + ILD+ S LD ++ V + + +P+
Sbjct: 145 DTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL--YESPE 202
Query: 274 ---NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
S+L+IT + L+E + I +E G I + G
Sbjct: 203 RYSRSVLLITQHLSLVE--QADHILFLEGGAIREGG 236
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 49/254 (19%)
Query: 77 LLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV--LVGHPDYE 132
+++++ +T V + + I L V+L V G+++ ++G +G+GKSTL + L+ P
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--- 57
Query: 133 VTEGSVVFKGENLLEMEPEERSLA--GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ 190
TEGSV+ G+ L + E + A + M FQ H + R G
Sbjct: 58 -TEGSVLVDGQELTTLSESELTKARRQIGMIFQ--------------HFNLLSSRTVFGN 102
Query: 191 PEIGPIEFYAYLYPKLERLSMKTDFL--------NRNVNEGFSGGERKRNEILQLAVLGA 242
+ P+E PK E T+ L + + SGG+++R I +
Sbjct: 103 VAL-PLELDN--TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159
Query: 243 DLAILDEIDSGLD-------VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
+ + DE S LD ++ L+D+ + + GL ++L+ITH +++ I +
Sbjct: 160 KVLLCDEATSALDPATTRSILELLKDINRRL-GL-----TILLITHEMDVVKRICDC-VA 212
Query: 296 IMEDGRIIKTGDAS 309
++ +G +I+ S
Sbjct: 213 VISNGELIEQDTVS 226
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 38/228 (16%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
I + +L + G V A++G +GSGKST+ +L+ Y+ G++ G ++ ++ P
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL--YDPASGTISLDGHDIRQLNPVWL 447
Query: 153 RSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
RS G Q P+ NI AY A P A ++ ++
Sbjct: 448 RSKIGTVS--QEPILFSCSIAENI-----AYGAD---------DPSSVTAEEIQRVAEVA 491
Query: 211 MKTDFLNRNVNEGF-----------SGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 259
F+ RN +GF SGG+++R I + + + +LDE S LD +
Sbjct: 492 NAVAFI-RNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENE 550
Query: 260 RDVAKAVNGLLTPKNSLLMITHYRRLLEFIK-PTFIHIMEDGRIIKTG 306
V +A++ L+ + ++L+I H+ L IK + +++ G+I + G
Sbjct: 551 YLVQEALDRLMDGR-TVLVIAHH---LSTIKNANMVAVLDQGKITEYG 594
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 71 DEKSQPLLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV--LV 126
D+ + ++++ +T V + + I L V+L V G+++ ++G +G+GKSTL + L+
Sbjct: 18 DDDDKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 127 GHPDYEVTEGSVVFKGENLL-----EMEPEERSLAGLFMSF 162
P TEGSV+ G+ L E+ R + +F F
Sbjct: 78 ERP----TEGSVLVDGQELTTLSESELTKARRQIGXIFQHF 114
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 34/226 (15%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
+KG++L V G++ ++G NG+GK+T + G +G ++F G+++ +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--VRAQKGKIIFNGQDITNKPAHVIN 79
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL-ERLSMKT 213
G+ + + P + + L R+ K G +E+ L+P+L ERL
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKR--DLEWIFSLFPRLKERL---- 133
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD---VDALRDVAKAVNG-- 268
+ + SGGE++ I + L DE GL V + +V + +N
Sbjct: 134 ----KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 269 ---LLTPKNSL--LMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
LL +N+L L + HY +++E G+I+ G AS
Sbjct: 190 TTILLVEQNALGALKVAHYG-----------YVLETGQIVLEGKAS 224
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Query: 83 LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142
+TA E +LK +N + G++ A+ G G+GK++L +++G + E +EG + G
Sbjct: 12 VTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSG 69
Query: 143 ENLLEMEPEERSLAGLFMSFQSPVE--IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA 200
+SF S +PG + + ++Y+ R + +
Sbjct: 70 R----------------ISFCSQFSWIMPGTIKENIIGVSYDEYRYR-------SVIKAC 106
Query: 201 YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
L + + + K + + SGG+R R + + ADL +LD LDV +
Sbjct: 107 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 166
Query: 261 DVAKA-VNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
++ ++ V L+ K +L+ + L + K +H
Sbjct: 167 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 202
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
++L+G+ + G+V A++G NGSGKST++ +L Y+ T G V+ GE L++ +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQYD 87
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
++L+G+ + G+V A++G NGSGKST++ +L Y+ T G V+ GE L++ +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQYD 87
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 30/213 (14%)
Query: 80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV 139
V ++ V + K L VN+ + GE I+G +G+GK+T +++ G +V +
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG---LDVPSTGEL 62
Query: 140 FKGENL------LEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
+ + L L + PE+R + M FQ+ P N F ++A+ K+ + EI
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIG---MVFQTWALYP--NLTAFENIAFPLTNMKMSKEEI 117
Query: 194 GPIEFYAYLYPKLERLSMKTDF---LNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250
++E ++ D LN E SG +++R + + V L +LDE
Sbjct: 118 ---------RKRVEEVAKILDIHHVLNHFPRE-LSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 251 DSGLDVDALRDVAKAVNGLLTPK--NSLLMITH 281
S LD +RD A+A+ + + +LL+++H
Sbjct: 168 FSNLDA-RMRDSARALVKEVQSRLGVTLLVVSH 199
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127
+LK VN G+++ ++GKNGSGK+TL K+L G
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG 59
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 21/223 (9%)
Query: 89 ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
+ K+ +LK + + G+ A++G GSGK+T+ +L+ Y+V G ++ G +++
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF--YDVDRGQILVDG---IDI 419
Query: 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP-----EIGPIEFYAYLY 203
+RS S +S + I + I F K G P EI +
Sbjct: 420 RKIKRS------SLRSSIGIVLQDTILFSTTV--KENLKYGNPGATDEEIKEAAKLTHSD 471
Query: 204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263
++ L + + + E S G+R+ I + + + ILDE S +D + +
Sbjct: 472 HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ 531
Query: 264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
A+ L+ K S++ I H RL I ++ DG I++ G
Sbjct: 532 AAMWKLMEGKTSII-IAH--RLNTIKNADLIIVLRDGEIVEMG 571
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 22/168 (13%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE------- 147
++ ++L V +GE ++G +G GK+T +++ G E + G ++ G+ L+
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE--EPSRGQ-IYIGDKLVADPEKGIF 75
Query: 148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE 207
+ P++R +A M FQS P + D ++A+ + RK+ + EI + E
Sbjct: 76 VPPKDRDIA---MVFQSYALYPHMTVYD--NIAFPLKLRKVPRQEID-----QRVREVAE 125
Query: 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
L + T+ LNR E SGG+R+R + + V + ++DE S LD
Sbjct: 126 LLGL-TELLNRKPRE-LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 37/210 (17%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+LK +NL + +GE+ AI G GSGK++L +++G + E +EG + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG--ELEASEGIIKHSGR---------- 100
Query: 154 SLAGLFMSFQSPVE--IPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
+SF S +PG NI F ++Y+ R K + L + +
Sbjct: 101 ------VSFCSQFSWIMPGTIKENIIF-GVSYDEYRYK-------SVVKACQLQQDITKF 146
Query: 210 SMKTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA- 265
+ + N + EG SGG+R R + + ADL +LD LDV V ++
Sbjct: 147 AEQD---NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
V L+ K +L+ + L + K +H
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILH 233
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 224 FSGGERKRNEI---LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280
SGGE +R ++ LQ G + ILDE +GL D +R + +NGL+ N++++I
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 281 H 281
H
Sbjct: 924 H 924
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 37/210 (17%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+LK +NL + +GE+ AI G GSGK++L +++G + E +EG + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG--ELEASEGIIKHSGR---------- 100
Query: 154 SLAGLFMSFQSPVE--IPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
+SF S +PG NI F ++Y+ R K + L + +
Sbjct: 101 ------VSFCSQFSWIMPGTIKENIIF-GVSYDEYRYK-------SVVKACQLQQDITKF 146
Query: 210 SMKTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA- 265
+ + N + EG SGG+R R + + ADL +LD LDV V ++
Sbjct: 147 AEQD---NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
V L+ K +L+ + L + K +H
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILH 233
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE------- 147
+K ++L + +GE ++G +G GK+T + + G E T G + + +NL+
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLE--EPTRGQIYIE-DNLVADPEKGVF 78
Query: 148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE 207
+ P+ER +A +F S+ +NI A+ + RK+ + EI + E
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDNI-----AFPLKLRKVPKQEID-----KRVREVAE 128
Query: 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
L + T+ LNR E SGG+R+R + + + + + DE S LD
Sbjct: 129 XLGL-TELLNRKPRE-LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+LK +N + G++ A+ G G+GK++L +++G + E +EG + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSGR---------- 100
Query: 154 SLAGLFMSF--QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
+SF Q+ +PG + + ++Y+ R + + L + + +
Sbjct: 101 ------ISFCSQNSWIMPGTIKENIIGVSYDEYRYR-------SVIKACQLEEDISKFAE 147
Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA-VNGLL 270
K + + SGG+R R + + ADL +LD LDV +++ ++ V L+
Sbjct: 148 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
Query: 271 TPKNSLLMITHYRRLLEFIKPTFIH 295
K +L+ + L + K +H
Sbjct: 208 ANKTRILVTSKMEHLKKADKILILH 232
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+LK +N + G++ A+ G G+GK++L +++G + E +EG + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSGR---------- 100
Query: 154 SLAGLFMSF--QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
+SF Q+ +PG + + ++Y+ R + + L + + +
Sbjct: 101 ------ISFCSQNSWIMPGTIKENIIGVSYDEYRYR-------SVIKACQLEEDISKFAE 147
Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA-VNGLL 270
K + + SGG+R R + + ADL +LD LDV +++ ++ V L+
Sbjct: 148 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
Query: 271 TPKNSLLMITHYRRLLEFIKPTFIH 295
K +L+ + L + K +H
Sbjct: 208 ANKTRILVTSKMEHLKKADKILILH 232
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 31/218 (14%)
Query: 83 LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142
+TA E +LK +N + G++ A+ G G+GK++L +++G + E +EG + G
Sbjct: 12 VTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSG 69
Query: 143 ENLLEMEPEERSLAGLFMSFQSPVE--IPGV--NNIDFLHMAYNARRRKLGQPEIGPIEF 198
+SF S +PG NI F ++Y+ R + +
Sbjct: 70 R----------------ISFCSQFSWIMPGTIKENIIF-GVSYDEYRYR-------SVIK 105
Query: 199 YAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
L + + + K + + SGG+R R + + ADL +LD LDV
Sbjct: 106 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 259 LRDVAKA-VNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
+++ ++ V L+ K +L+ + L + K +H
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 203
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 35/209 (16%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+LK +NL + +GE+ AI G GSGK++L +++G + E +EG + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG--ELEASEGIIKHSGR---------- 100
Query: 154 SLAGLFMSFQSPVE--IPGVNNIDFLH-MAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
+SF S +PG + + ++Y+ R K + L + + +
Sbjct: 101 ------VSFCSQFSWIMPGTIKENIIRGVSYDEYRYK-------SVVKACQLQQDITKFA 147
Query: 211 MKTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA-V 266
+ N + EG SGG+R R + + ADL +LD LDV V ++ V
Sbjct: 148 EQD---NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 267 NGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
L+ K +L+ + L + K +H
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILH 233
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 35/209 (16%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+LK +NL + +GE+ AI G GSGK++L +++G + E +EG + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG--ELEASEGIIKHSGR---------- 100
Query: 154 SLAGLFMSFQSPVE--IPGVNNIDFLH-MAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
+SF S +PG + + ++Y+ R K + L + + +
Sbjct: 101 ------VSFCSQFSWIMPGTIKENIISGVSYDEYRYK-------SVVKACQLQQDITKFA 147
Query: 211 MKTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA-V 266
+ N + EG SGG+R R + + ADL +LD LDV V ++ V
Sbjct: 148 EQD---NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 267 NGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
L+ K +L+ + L + K +H
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILH 233
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 31/218 (14%)
Query: 83 LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142
+TA E +LK +N + G++ A+ G G+GK++L +++G + E +EG + G
Sbjct: 24 VTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSG 81
Query: 143 ENLLEMEPEERSLAGLFMSFQSPVE--IPGV--NNIDFLHMAYNARRRKLGQPEIGPIEF 198
+SF S +PG NI F ++Y+ R + +
Sbjct: 82 R----------------ISFCSQFSWIMPGTIKENIIF-GVSYDEYRYR-------SVIK 117
Query: 199 YAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
L + + + K + + SGG+R R + + ADL +LD LDV
Sbjct: 118 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 177
Query: 259 LRDVAKA-VNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
+++ ++ V L+ K +L+ + L + K +H
Sbjct: 178 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 215
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV 138
LK VNL + EGE +IMG +GSGKST+ + +G D + TEG V
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNI-IGCLD-KPTEGEV 62
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 29/39 (74%)
Query: 89 ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127
+++ + + +N +N+G++ A++G+NG GKSTL +L+G
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV 138
LK VNL + EGE +IMG +GSGKST+ + +G D + TEG V
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNI-IGCLD-KPTEGEV 62
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 29/189 (15%)
Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
V GE+ ++G NG+GKSTL + G +GS+ F G+ L + +L ++S
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAG---MTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 162 FQS--PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRN 219
Q P P V + LH ++ R +L G + D L R+
Sbjct: 80 QQQTPPFATP-VWHYLTLHQ-HDKTRTELLNDVAGALAL--------------DDKLGRS 123
Query: 220 VNEGFSGGERKRNE----ILQL---AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP 272
N+ SGGE +R +LQ+ A L +LD+ LDV + K ++ L
Sbjct: 124 TNQ-LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQ 182
Query: 273 KNSLLMITH 281
+++M +H
Sbjct: 183 GLAIVMSSH 191
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 29/189 (15%)
Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
V GE+ ++G NG+GKSTL + G +GS+ F G+ L + +L ++S
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAG---MTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 162 FQS--PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRN 219
Q P P V + LH ++ R +L G + D L R+
Sbjct: 80 QQQTPPFATP-VWHYLTLHQ-HDKTRTELLNDVAGALAL--------------DDKLGRS 123
Query: 220 VNEGFSGGERKRNE----ILQL---AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP 272
N+ SGGE +R +LQ+ A L +LD+ + LDV + K ++ L
Sbjct: 124 TNQ-LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQ 182
Query: 273 KNSLLMITH 281
+++M +H
Sbjct: 183 GLAIVMSSH 191
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 29/164 (17%)
Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
V GE+ ++G NG+GKSTL G +GS+ F G+ L + +L ++S
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTS---GKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 162 FQS--PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRN 219
Q P P V + LH ++ R +L G + D L R+
Sbjct: 80 QQQTPPFATP-VWHYLTLHQ-HDKTRTELLNDVAGALAL--------------DDKLGRS 123
Query: 220 VNEGFSGGERKRNE----ILQL---AVLGADLAILDEIDSGLDV 256
N+ SGGE +R +LQ+ A L +LDE + LDV
Sbjct: 124 TNQ-LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDV 166
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 29/164 (17%)
Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
V GE+ ++G NG+GKSTL G +GS+ F G+ L + +L ++S
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTS---GKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 162 FQS--PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRN 219
Q P P V + LH ++ R +L G + D L R+
Sbjct: 80 QQQTPPFATP-VWHYLTLHQ-HDKTRTELLNDVAGALAL--------------DDKLGRS 123
Query: 220 VNEGFSGGERKRNE----ILQL---AVLGADLAILDEIDSGLDV 256
N+ SGGE +R +LQ+ A L +LDE + LDV
Sbjct: 124 TNQ-LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDV 166
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 89 ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL 125
E+ +L GVN V G + A++G+ GSGKSTL ++
Sbjct: 353 ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 60/246 (24%)
Query: 93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL--VGHPDYEVTEGSVVFKGENLLEMEP 150
E+LKGV+L G+V +I+G +GSGKST + + + P +EG+++ G+N+ +
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP----SEGAIIVNGQNINLVRD 75
Query: 151 EERSL------------AGLFMSFQ----------------SPVEIPGVNNIDFLHMAYN 182
++ L L M FQ +P+++ G++ ++
Sbjct: 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK-------HD 128
Query: 183 ARRRKLGQ-PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG 241
AR R L ++G E YP SGG+++R I + +
Sbjct: 129 ARERALKYLAKVGIDERAQGKYPV-----------------HLSGGQQQRVSIARALAME 171
Query: 242 ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301
D+ + DE S LD + + +V + + L +++++TH + I + G+
Sbjct: 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI-FLHQGK 230
Query: 302 IIKTGD 307
I + GD
Sbjct: 231 IEEEGD 236
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 102/218 (46%), Gaps = 22/218 (10%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDY-EVT-EGSVVFKGENLLEME 149
+L ++L ++ GE+ I+G +G GK+TL + L G PD E++ G +F L +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV- 77
Query: 150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
ER L L Q V P + + ++AY LG + + + LE L
Sbjct: 78 -RERRLGYL---VQEGVLFPHLTV--YRNIAYG-----LGNGKGRTAQERQRIEAMLE-L 125
Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK-AVNG 268
+ ++ R +E SGG+++R + + +L +LDE S LD R + + +
Sbjct: 126 TGISELAGRYPHE-LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAA 184
Query: 269 LLTPKNSLLMITHYR-RLLEFIKPTFIHIMEDGRIIKT 305
L S + ++H R L++ I +M+ GRI++T
Sbjct: 185 LRANGKSAVFVSHDREEALQYAD--RIAVMKQGRILQT 220
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 88/206 (42%), Gaps = 29/206 (14%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
+LK +N + G++ A+ G G+GK++L +++G + E +EG + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSGR---------- 100
Query: 154 SLAGLFMSFQSPVE--IPGVNNIDFLH-MAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
+SF S +PG + + ++Y+ R + + L + + +
Sbjct: 101 ------ISFCSQFSWIMPGTIKENIIAGVSYDEYRYR-------SVIKACQLEEDISKFA 147
Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA-VNGL 269
K + + SGG+R R + + ADL +LD LDV +++ ++ V L
Sbjct: 148 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 207
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIH 295
+ K +L+ + L + K +H
Sbjct: 208 MANKTRILVTSKMEHLKKADKILILH 233
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV 138
LK VNL + EGE +I G +GSGKST + +G D + TEG V
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNI-IGCLD-KPTEGEV 62
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTL 121
+ V LTA E IL+ ++ ++ G+ ++G+ GSGKSTL
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTL 63
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142
+LK +N + G++ A+ G G+GK++L +++G + E +EG + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSG 99
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142
+LK +N + G++ A+ G G+GK++L +++G + E +EG + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSG 99
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 68 DGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127
+G K + +++VT + + + + +N + A++G NG+GKSTL VL G
Sbjct: 662 EGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 181 YNARRRKLGQPEIGP 195
YNARRR+L QPEI P
Sbjct: 53 YNARRRQLQQPEIQP 67
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
L+ +NL VN GE I+G NGSGK+TL + + G Y G++ G + ++ R
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY---SGNIFINGMEVRKIRNYIRY 76
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLH 178
L +++ V VN+I +L+
Sbjct: 77 STNLPEAYEIGVT---VNDIVYLY 97
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 254 LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATV 313
L +DA+RD+A+ VN + +L IT+++ +E + + H GR G+ I +V
Sbjct: 361 LALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLAHY---GRPKIDGELKITSV 417
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 254 LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATV 313
L +DA+RD+A+ VN + +L IT+++ +E + + H GR G+ I +V
Sbjct: 170 LALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLAHY---GRPKIDGELKITSV 226
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 68 DGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127
+G K + +++VT + + + +N + A++G NG+GKSTL VL G
Sbjct: 662 EGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 68 DGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127
+G K + +++VT + + + +N + A++G NG+GKSTL VL G
Sbjct: 656 EGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 715
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 224 FSGGERKRNEI---LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280
SGGE +R ++ L+ G L ILDE GL + +R + + ++ L+ N++++I
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 281 H 281
H
Sbjct: 866 H 866
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 71 DEKSQPLLQVTGLTAVIAESKQEILKG----VNLLVNEGEVHAIMGKNGSGKSTLSKVLV 126
D+ S LL+ L + +Q+ILK V +N G ++G GSGK+T+ K++
Sbjct: 11 DKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLN-GRSMYLVGMMGSGKTTVGKIMA 69
Query: 127 GHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPV 166
Y F + L+E + S+A +F F V
Sbjct: 70 RSLGY------TFFDCDTLIEQAMKGTSVAEIFEHFGESV 103
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 224 FSGGERKRNEI---LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280
SGGE +R ++ L G L ILDE +GL VD + + ++ L+ +++L+I
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 281 H 281
H
Sbjct: 906 H 906
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 224 FSGGERKRNEI---LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280
SGGE +R ++ L G L ILDE +GL VD + + ++ L+ +++L+I
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 281 H 281
H
Sbjct: 906 H 906
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 12/55 (21%)
Query: 242 ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI 296
A LAILD ++G + P S+L I HYRR +E IH+
Sbjct: 406 AQLAILDNYEAGFQ-----------TAFMVP-TSILAIQHYRRTVESFSKFNIHV 448
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 224 FSGGERKRNEI---LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280
SGGE +R ++ L G L ILDE +GL VD + + ++ L+ +++L+I
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 281 H 281
H
Sbjct: 604 H 604
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,681,744
Number of Sequences: 62578
Number of extensions: 411524
Number of successful extensions: 1528
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1328
Number of HSP's gapped (non-prelim): 168
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)