Query 020491
Match_columns 325
No_of_seqs 264 out of 2403
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 4.6E-20 9.9E-25 174.4 9.4 81 211-320 203-284 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 5E-16 1.1E-20 105.3 2.3 44 267-310 1-44 (44)
3 COG5540 RING-finger-containing 99.4 1.1E-13 2.5E-18 126.9 3.9 52 264-315 321-373 (374)
4 PHA02929 N1R/p28-like protein; 99.3 9.4E-13 2E-17 119.8 5.4 50 265-314 173-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 7.4E-13 1.6E-17 99.6 3.9 45 266-310 19-73 (73)
6 COG5243 HRD1 HRD ubiquitin lig 99.2 1E-11 2.3E-16 116.8 3.4 56 259-314 280-345 (491)
7 KOG0317 Predicted E3 ubiquitin 99.1 7.9E-11 1.7E-15 108.1 4.5 57 258-317 231-287 (293)
8 PLN03208 E3 ubiquitin-protein 99.1 1.7E-10 3.7E-15 101.2 4.9 51 263-316 15-81 (193)
9 cd00162 RING RING-finger (Real 99.0 2.2E-10 4.7E-15 76.4 3.5 44 268-313 1-45 (45)
10 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.3E-10 5E-15 79.6 2.6 47 265-314 1-48 (50)
11 PF12861 zf-Apc11: Anaphase-pr 98.9 6.8E-10 1.5E-14 84.8 3.6 50 265-314 20-82 (85)
12 PF13923 zf-C3HC4_2: Zinc fing 98.9 6.4E-10 1.4E-14 73.3 2.8 39 269-309 1-39 (39)
13 KOG0823 Predicted E3 ubiquitin 98.9 1.2E-09 2.5E-14 97.8 5.1 50 264-316 45-97 (230)
14 KOG0802 E3 ubiquitin ligase [P 98.9 4.6E-10 9.9E-15 114.5 2.6 57 262-318 287-345 (543)
15 PF14634 zf-RING_5: zinc-RING 98.8 4.9E-09 1.1E-13 70.9 3.1 44 268-311 1-44 (44)
16 smart00184 RING Ring finger. E 98.7 8.4E-09 1.8E-13 66.3 3.3 38 269-309 1-39 (39)
17 PHA02926 zinc finger-like prot 98.7 5.7E-09 1.2E-13 92.8 3.1 51 265-315 169-231 (242)
18 PF00097 zf-C3HC4: Zinc finger 98.7 6E-09 1.3E-13 69.1 2.0 39 269-309 1-41 (41)
19 KOG0828 Predicted E3 ubiquitin 98.7 2E-08 4.4E-13 97.9 6.1 50 266-315 571-635 (636)
20 PF15227 zf-C3HC4_4: zinc fing 98.6 1.7E-08 3.6E-13 67.7 2.6 38 269-309 1-42 (42)
21 KOG1734 Predicted RING-contain 98.6 9.6E-09 2.1E-13 93.4 1.1 53 264-316 222-283 (328)
22 smart00504 Ubox Modified RING 98.6 3.9E-08 8.5E-13 71.1 4.0 46 267-315 2-47 (63)
23 KOG0320 Predicted E3 ubiquitin 98.6 2.1E-08 4.5E-13 86.3 2.6 51 265-316 130-180 (187)
24 smart00744 RINGv The RING-vari 98.6 5.2E-08 1.1E-12 67.4 3.1 42 268-310 1-49 (49)
25 COG5194 APC11 Component of SCF 98.5 6.1E-08 1.3E-12 72.4 3.2 49 267-315 21-82 (88)
26 TIGR00599 rad18 DNA repair pro 98.4 1E-07 2.2E-12 93.0 3.2 49 265-316 25-73 (397)
27 KOG1493 Anaphase-promoting com 98.3 1.4E-07 3E-12 70.0 0.5 49 266-314 20-81 (84)
28 PF13445 zf-RING_UBOX: RING-ty 98.3 6.3E-07 1.4E-11 60.2 2.8 38 269-307 1-43 (43)
29 COG5574 PEX10 RING-finger-cont 98.3 6.3E-07 1.4E-11 81.7 3.5 51 264-317 213-265 (271)
30 KOG0804 Cytoplasmic Zn-finger 98.2 4.9E-07 1.1E-11 87.6 2.7 50 263-314 172-222 (493)
31 COG5219 Uncharacterized conser 98.1 6.3E-07 1.4E-11 93.2 1.0 51 264-314 1467-1523(1525)
32 KOG2930 SCF ubiquitin ligase, 98.1 1.7E-06 3.7E-11 67.9 2.6 48 266-313 46-107 (114)
33 TIGR00570 cdk7 CDK-activating 98.0 3.6E-06 7.8E-11 79.3 3.5 53 265-317 2-57 (309)
34 PF04564 U-box: U-box domain; 98.0 3.2E-06 7E-11 63.4 2.5 49 265-316 3-52 (73)
35 PF11793 FANCL_C: FANCL C-term 98.0 1.2E-06 2.6E-11 65.2 0.1 50 267-316 3-68 (70)
36 KOG0827 Predicted E3 ubiquitin 98.0 3.1E-06 6.8E-11 80.8 2.1 44 267-310 5-52 (465)
37 KOG2164 Predicted E3 ubiquitin 97.9 9.2E-06 2E-10 80.3 4.4 48 266-316 186-238 (513)
38 KOG4265 Predicted E3 ubiquitin 97.9 1.3E-05 2.8E-10 76.2 4.1 54 263-319 287-341 (349)
39 KOG0287 Postreplication repair 97.8 7E-06 1.5E-10 77.2 1.5 48 267-317 24-71 (442)
40 KOG2177 Predicted E3 ubiquitin 97.8 7.5E-06 1.6E-10 75.3 1.5 45 264-311 11-55 (386)
41 KOG0825 PHD Zn-finger protein 97.7 6.6E-06 1.4E-10 84.4 -0.3 51 265-315 122-172 (1134)
42 COG5432 RAD18 RING-finger-cont 97.6 3.9E-05 8.5E-10 70.9 2.4 46 267-315 26-71 (391)
43 KOG4445 Uncharacterized conser 97.5 3E-05 6.5E-10 71.9 0.8 52 267-318 116-190 (368)
44 KOG1645 RING-finger-containing 97.4 0.00011 2.4E-09 70.8 3.3 48 266-313 4-55 (463)
45 KOG1039 Predicted E3 ubiquitin 97.4 8.6E-05 1.9E-09 71.3 2.4 53 264-316 159-223 (344)
46 KOG4172 Predicted E3 ubiquitin 97.3 5.4E-05 1.2E-09 52.8 -0.3 45 267-314 8-54 (62)
47 KOG0311 Predicted E3 ubiquitin 97.2 6E-05 1.3E-09 71.5 -0.9 54 264-320 41-96 (381)
48 KOG0824 Predicted E3 ubiquitin 97.1 0.0002 4.4E-09 66.7 1.8 48 266-316 7-55 (324)
49 KOG1941 Acetylcholine receptor 97.1 0.00018 4E-09 69.0 0.8 48 266-313 365-415 (518)
50 PF14835 zf-RING_6: zf-RING of 97.0 0.00016 3.4E-09 52.4 0.2 47 267-317 8-54 (65)
51 PF05883 Baculo_RING: Baculovi 97.0 0.00036 7.8E-09 58.0 1.8 36 266-301 26-67 (134)
52 KOG4159 Predicted E3 ubiquitin 96.8 0.00059 1.3E-08 66.9 2.4 49 264-315 82-130 (398)
53 PHA02862 5L protein; Provision 96.8 0.00089 1.9E-08 56.1 2.5 45 267-315 3-54 (156)
54 KOG1785 Tyrosine kinase negati 96.7 0.00054 1.2E-08 66.0 1.2 46 267-315 370-417 (563)
55 PF12906 RINGv: RING-variant d 96.7 0.0011 2.3E-08 45.5 2.0 40 269-309 1-47 (47)
56 KOG1428 Inhibitor of type V ad 96.6 0.0012 2.6E-08 71.9 2.9 55 261-315 3481-3545(3738)
57 KOG3970 Predicted E3 ubiquitin 96.6 0.0019 4.1E-08 57.9 3.3 54 265-319 49-110 (299)
58 KOG0801 Predicted E3 ubiquitin 96.6 0.00078 1.7E-08 57.4 0.8 38 256-293 167-204 (205)
59 PF11789 zf-Nse: Zinc-finger o 96.5 0.0012 2.5E-08 47.2 1.5 40 267-308 12-53 (57)
60 KOG0297 TNF receptor-associate 96.4 0.0016 3.5E-08 64.1 2.0 52 264-317 19-70 (391)
61 PHA02825 LAP/PHD finger-like p 96.2 0.0041 8.8E-08 53.1 3.0 48 264-315 6-60 (162)
62 COG5152 Uncharacterized conser 95.9 0.0027 5.9E-08 55.9 0.8 44 267-313 197-240 (259)
63 KOG1814 Predicted E3 ubiquitin 95.6 0.0061 1.3E-07 59.2 2.0 46 267-312 185-238 (445)
64 PF10367 Vps39_2: Vacuolar sor 95.4 0.0056 1.2E-07 48.5 0.8 34 263-297 75-108 (109)
65 KOG0978 E3 ubiquitin ligase in 95.3 0.0057 1.2E-07 63.6 0.5 48 267-317 644-692 (698)
66 PF14570 zf-RING_4: RING/Ubox 95.1 0.012 2.6E-07 40.4 1.6 44 269-313 1-47 (48)
67 KOG1813 Predicted E3 ubiquitin 95.0 0.0077 1.7E-07 56.2 0.6 46 267-315 242-287 (313)
68 KOG2879 Predicted E3 ubiquitin 94.7 0.036 7.8E-07 51.3 4.0 51 262-314 235-287 (298)
69 PHA03096 p28-like protein; Pro 94.5 0.018 3.9E-07 54.2 1.7 47 267-313 179-236 (284)
70 KOG1952 Transcription factor N 94.5 0.019 4.2E-07 60.3 2.0 52 262-313 187-246 (950)
71 KOG0827 Predicted E3 ubiquitin 94.4 0.0028 6.1E-08 61.0 -3.9 51 267-317 197-248 (465)
72 KOG1002 Nucleotide excision re 94.4 0.017 3.8E-07 57.7 1.2 52 265-319 535-591 (791)
73 PF07800 DUF1644: Protein of u 94.1 0.05 1.1E-06 46.5 3.3 37 265-301 1-47 (162)
74 KOG1571 Predicted E3 ubiquitin 93.9 0.051 1.1E-06 52.2 3.3 46 264-315 303-348 (355)
75 KOG2660 Locus-specific chromos 93.6 0.025 5.4E-07 53.6 0.7 50 265-316 14-63 (331)
76 KOG1609 Protein involved in mR 93.5 0.061 1.3E-06 50.8 3.1 50 266-315 78-135 (323)
77 KOG4692 Predicted E3 ubiquitin 93.5 0.045 9.8E-07 52.3 2.1 48 264-314 420-467 (489)
78 KOG1940 Zn-finger protein [Gen 93.3 0.041 8.9E-07 51.4 1.6 45 267-311 159-204 (276)
79 KOG4275 Predicted E3 ubiquitin 93.3 0.018 3.9E-07 53.7 -0.8 44 265-315 299-343 (350)
80 KOG3039 Uncharacterized conser 93.2 0.1 2.3E-06 47.6 4.0 53 265-317 220-273 (303)
81 KOG3268 Predicted E3 ubiquitin 92.1 0.1 2.3E-06 45.4 2.4 53 267-319 166-233 (234)
82 KOG1100 Predicted E3 ubiquitin 91.8 0.08 1.7E-06 47.7 1.4 39 269-314 161-200 (207)
83 PF03854 zf-P11: P-11 zinc fin 91.7 0.068 1.5E-06 36.4 0.6 33 284-316 15-48 (50)
84 COG5222 Uncharacterized conser 91.6 0.09 2E-06 49.3 1.5 45 267-314 275-322 (427)
85 KOG0826 Predicted E3 ubiquitin 91.1 0.4 8.6E-06 45.6 5.2 49 261-312 295-344 (357)
86 PF08746 zf-RING-like: RING-li 91.0 0.095 2.1E-06 35.1 0.7 41 269-309 1-43 (43)
87 KOG4185 Predicted E3 ubiquitin 90.6 0.17 3.7E-06 47.7 2.4 47 267-313 4-54 (296)
88 KOG2932 E3 ubiquitin ligase in 89.8 0.11 2.4E-06 48.9 0.4 32 282-315 104-135 (389)
89 COG5183 SSM4 Protein involved 89.7 0.28 6.2E-06 51.6 3.2 56 261-317 7-69 (1175)
90 PF04641 Rtf2: Rtf2 RING-finge 89.4 0.43 9.4E-06 44.4 4.0 52 264-316 111-163 (260)
91 PF14447 Prok-RING_4: Prokaryo 89.1 0.22 4.8E-06 35.0 1.4 46 267-317 8-53 (55)
92 KOG3161 Predicted E3 ubiquitin 88.7 0.13 2.9E-06 52.7 0.1 45 267-314 12-57 (861)
93 COG5236 Uncharacterized conser 88.5 0.7 1.5E-05 44.3 4.7 46 264-312 59-106 (493)
94 PF14446 Prok-RING_1: Prokaryo 88.4 0.71 1.5E-05 32.5 3.5 43 266-312 5-50 (54)
95 KOG0802 E3 ubiquitin ligase [P 87.3 0.33 7.2E-06 49.9 2.0 51 261-318 474-524 (543)
96 KOG2034 Vacuolar sorting prote 86.7 0.34 7.3E-06 51.6 1.6 36 264-300 815-850 (911)
97 COG5175 MOT2 Transcriptional r 86.5 0.46 9.9E-06 45.4 2.3 52 264-315 12-65 (480)
98 KOG3053 Uncharacterized conser 86.5 0.32 7E-06 44.7 1.2 54 265-318 19-86 (293)
99 KOG0309 Conserved WD40 repeat- 86.4 0.43 9.4E-06 50.0 2.2 26 283-308 1044-1069(1081)
100 KOG1001 Helicase-like transcri 86.3 0.32 6.9E-06 51.3 1.2 47 267-317 455-503 (674)
101 KOG2114 Vacuolar assembly/sort 85.6 0.42 9.1E-06 50.7 1.7 42 267-313 841-882 (933)
102 PF10272 Tmpp129: Putative tra 84.3 1.9 4.1E-05 42.0 5.4 28 287-314 311-351 (358)
103 KOG4362 Transcriptional regula 82.8 0.33 7.2E-06 50.6 -0.5 47 267-316 22-71 (684)
104 KOG0298 DEAD box-containing he 81.8 0.5 1.1E-05 52.3 0.3 47 266-314 1153-1199(1394)
105 PF11023 DUF2614: Protein of u 80.6 7.9 0.00017 31.3 6.7 25 298-322 80-104 (114)
106 KOG3002 Zn finger protein [Gen 79.8 1.2 2.5E-05 42.4 2.1 44 265-315 47-92 (299)
107 COG5220 TFB3 Cdk activating ki 78.9 0.79 1.7E-05 41.9 0.6 51 265-315 9-65 (314)
108 KOG0825 PHD Zn-finger protein 78.5 1.6 3.5E-05 46.1 2.8 50 265-314 95-154 (1134)
109 KOG3005 GIY-YIG type nuclease 77.7 1.3 2.7E-05 41.2 1.6 47 267-313 183-242 (276)
110 KOG1829 Uncharacterized conser 73.1 1.2 2.5E-05 46.0 0.1 41 266-309 511-556 (580)
111 KOG4367 Predicted Zn-finger pr 71.0 2.1 4.5E-05 42.4 1.3 35 265-302 3-37 (699)
112 PRK02935 hypothetical protein; 69.7 18 0.00038 29.0 6.0 25 298-322 81-105 (110)
113 KOG2817 Predicted E3 ubiquitin 68.4 4.5 9.8E-05 39.6 3.0 46 267-312 335-383 (394)
114 KOG3899 Uncharacterized conser 65.0 3.6 7.9E-05 38.7 1.5 29 287-315 325-366 (381)
115 KOG0269 WD40 repeat-containing 64.3 5.2 0.00011 42.2 2.7 41 266-308 779-820 (839)
116 PF05290 Baculo_IE-1: Baculovi 63.2 6.4 0.00014 32.9 2.5 52 267-318 81-136 (140)
117 KOG1815 Predicted E3 ubiquitin 62.8 4.2 9.1E-05 40.8 1.7 38 264-303 68-105 (444)
118 smart00249 PHD PHD zinc finger 62.4 4.3 9.4E-05 26.1 1.2 30 269-298 2-31 (47)
119 PF14169 YdjO: Cold-inducible 62.1 3.9 8.5E-05 29.3 0.9 19 299-317 29-53 (59)
120 PF02891 zf-MIZ: MIZ/SP-RING z 61.7 7.9 0.00017 26.6 2.4 42 268-312 4-50 (50)
121 PF13901 DUF4206: Domain of un 60.8 5.7 0.00012 35.5 2.0 40 266-311 152-197 (202)
122 PF07975 C1_4: TFIIH C1-like d 59.4 8.8 0.00019 26.7 2.3 41 269-310 2-50 (51)
123 KOG4718 Non-SMC (structural ma 59.3 4.7 0.0001 36.3 1.1 42 266-309 181-222 (235)
124 KOG2066 Vacuolar assembly/sort 59.0 4.1 8.9E-05 43.2 0.9 43 266-309 784-830 (846)
125 KOG1812 Predicted E3 ubiquitin 56.5 4.2 9.1E-05 40.1 0.4 37 266-302 146-183 (384)
126 COG5524 Bacteriorhodopsin [Gen 53.9 27 0.00059 32.8 5.3 104 19-155 105-216 (285)
127 KOG3800 Predicted E3 ubiquitin 52.2 12 0.00026 35.3 2.6 43 275-317 10-54 (300)
128 PF00628 PHD: PHD-finger; Int 48.1 7.1 0.00015 26.3 0.4 41 269-310 2-49 (51)
129 KOG2068 MOT2 transcription fac 46.8 17 0.00037 34.9 2.8 52 267-319 250-303 (327)
130 KOG1812 Predicted E3 ubiquitin 42.9 12 0.00026 37.0 1.1 45 265-309 305-351 (384)
131 TIGR01294 P_lamban phospholamb 41.9 37 0.0008 22.9 3.0 13 180-192 33-45 (52)
132 KOG4739 Uncharacterized protei 41.9 14 0.00031 33.8 1.4 38 268-306 5-43 (233)
133 PF13717 zinc_ribbon_4: zinc-r 41.4 13 0.00027 23.8 0.7 26 267-292 3-36 (36)
134 PF10571 UPF0547: Uncharacteri 40.8 13 0.00029 22.0 0.7 21 269-291 3-24 (26)
135 PF04423 Rad50_zn_hook: Rad50 40.3 8 0.00017 26.8 -0.3 12 304-315 21-32 (54)
136 PF04272 Phospholamban: Phosph 39.8 34 0.00074 23.1 2.6 14 179-192 32-45 (52)
137 PF13719 zinc_ribbon_5: zinc-r 39.7 17 0.00036 23.3 1.1 26 267-292 3-36 (37)
138 PF05715 zf-piccolo: Piccolo Z 39.7 20 0.00042 25.7 1.5 14 303-316 2-15 (61)
139 PRK05978 hypothetical protein; 38.9 18 0.00039 30.8 1.5 29 285-318 36-67 (148)
140 PF07649 C1_3: C1-like domain; 38.9 20 0.00043 21.6 1.3 29 268-296 2-30 (30)
141 KOG3842 Adaptor protein Pellin 37.8 29 0.00062 33.3 2.8 50 266-315 341-415 (429)
142 COG3671 Predicted membrane pro 36.2 80 0.0017 25.9 4.7 48 164-211 68-115 (125)
143 KOG1729 FYVE finger containing 34.0 8.3 0.00018 36.5 -1.4 38 267-304 215-252 (288)
144 PF05478 Prominin: Prominin; 32.2 44 0.00096 36.2 3.5 28 166-197 90-117 (806)
145 COG5109 Uncharacterized conser 32.2 37 0.00079 32.6 2.5 44 267-310 337-383 (396)
146 PRK11827 hypothetical protein; 30.7 19 0.00042 25.9 0.3 20 297-316 2-21 (60)
147 PF06844 DUF1244: Protein of u 29.1 33 0.00072 25.1 1.3 11 291-301 12-22 (68)
148 PF13832 zf-HC5HC2H_2: PHD-zin 28.7 46 0.001 26.2 2.3 31 266-298 55-87 (110)
149 PF06667 PspB: Phage shock pro 28.3 1.5E+02 0.0033 22.2 4.9 16 211-226 32-47 (75)
150 KOG4451 Uncharacterized conser 28.3 48 0.001 30.3 2.5 21 301-321 261-281 (286)
151 PF02985 HEAT: HEAT repeat; I 27.9 39 0.00084 20.3 1.3 17 2-18 10-26 (31)
152 PRK10633 hypothetical protein; 27.6 1.7E+02 0.0037 22.3 5.0 19 131-149 13-31 (80)
153 KOG2927 Membrane component of 27.6 83 0.0018 30.6 4.1 29 58-87 186-214 (372)
154 TIGR00622 ssl1 transcription f 27.4 67 0.0015 26.1 3.0 45 267-311 56-111 (112)
155 KOG3039 Uncharacterized conser 26.2 46 0.00099 30.8 2.0 32 267-301 44-75 (303)
156 PRK13727 conjugal transfer pil 25.9 32 0.00069 25.7 0.8 22 24-49 32-53 (80)
157 cd00350 rubredoxin_like Rubred 25.7 50 0.0011 20.4 1.6 9 303-311 17-25 (33)
158 KOG2041 WD40 repeat protein [G 25.3 1.4E+02 0.003 32.1 5.5 47 264-314 1129-1185(1189)
159 TIGR02741 TraQ type-F conjugat 25.1 31 0.00068 25.7 0.6 22 24-49 32-53 (80)
160 smart00132 LIM Zinc-binding do 24.8 52 0.0011 20.0 1.6 36 269-313 2-37 (39)
161 PF03119 DNA_ligase_ZBD: NAD-d 23.6 32 0.00069 20.7 0.3 13 305-317 1-13 (28)
162 PF07191 zinc-ribbons_6: zinc- 23.1 8.6 0.00019 28.5 -2.7 40 267-314 2-41 (70)
163 PF11682 DUF3279: Protein of u 23.1 41 0.00089 28.0 1.0 22 286-316 102-123 (128)
164 PLN02189 cellulose synthase 22.7 1E+02 0.0022 34.3 4.2 50 265-314 33-87 (1040)
165 KOG4185 Predicted E3 ubiquitin 22.2 14 0.0003 34.7 -2.2 48 265-312 206-265 (296)
166 PF04710 Pellino: Pellino; In 22.1 30 0.00064 34.2 0.0 49 266-314 328-401 (416)
167 PF15353 HECA: Headcase protei 21.5 53 0.0011 26.4 1.3 15 286-300 39-53 (107)
168 PHA02898 virion envelope prote 20.6 1.9E+02 0.004 22.5 4.0 41 47-87 30-73 (92)
169 PF06906 DUF1272: Protein of u 20.6 1.9E+02 0.0041 20.5 3.7 47 267-316 6-54 (57)
170 PF14311 DUF4379: Domain of un 20.2 61 0.0013 22.3 1.3 22 287-309 34-55 (55)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.6e-20 Score=174.44 Aligned_cols=81 Identities=35% Similarity=0.760 Sum_probs=69.3
Q ss_pred hcCCCCHHHHhhcccceeeeccccccccCCCCCCCCCcccccCCCCCCcccCCCCCcccccccccccCCCceEEeCcCCc
Q 020491 211 QQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH 290 (325)
Q Consensus 211 ~~~~~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~ 290 (325)
+.+++.+..++++|..+|+...+++.. ..|+|||++|++||++|.|||+|.
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~-----------------------------~~CaIClEdY~~GdklRiLPC~H~ 253 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDAT-----------------------------DTCAICLEDYEKGDKLRILPCSHK 253 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCC-----------------------------ceEEEeecccccCCeeeEecCCCc
Confidence 357889999999999999876544211 489999999999999999999999
Q ss_pred cchHHHHHHHhcCC-CCccccccccCCCCcc
Q 020491 291 FHCACVDKWLYINA-TCPLCKYNILKSSSNQ 320 (325)
Q Consensus 291 FH~~CI~~WL~~~~-tCPlCR~~I~~~~~~~ 320 (325)
||..|||+||..+. .||+||+++.+....+
T Consensus 254 FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~ 284 (348)
T KOG4628|consen 254 FHVNCIDPWLTQTRTFCPVCKRDIRTDSGSE 284 (348)
T ss_pred hhhccchhhHhhcCccCCCCCCcCCCCCCCC
Confidence 99999999998875 5999999998765554
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.59 E-value=5e-16 Score=105.33 Aligned_cols=44 Identities=48% Similarity=1.260 Sum_probs=40.8
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccc
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 310 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR 310 (325)
++|+||+++|++++.+..|+|+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-13 Score=126.89 Aligned_cols=52 Identities=44% Similarity=1.051 Sum_probs=48.2
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHh-cCCCCccccccccC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~ 315 (325)
....+|+|||++|-.+|.++.|||+|.||..|+++|+. -+..||+||.++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34589999999999999999999999999999999998 78899999999975
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.34 E-value=9.4e-13 Score=119.81 Aligned_cols=50 Identities=32% Similarity=0.758 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCc----eEE-eCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 265 EDAECCICLSAYDDGVE----LRE-LPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~----lr~-LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
++.+|+||++.+.+++. +.. ++|+|.||.+||.+|++.+.+||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 34799999999876541 234 469999999999999999999999999875
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.34 E-value=7.4e-13 Score=99.57 Aligned_cols=45 Identities=44% Similarity=1.068 Sum_probs=36.6
Q ss_pred CcccccccccccC----------CCceEEeCcCCccchHHHHHHHhcCCCCcccc
Q 020491 266 DAECCICLSAYDD----------GVELRELPCGHHFHCACVDKWLYINATCPLCK 310 (325)
Q Consensus 266 d~~C~ICL~~y~~----------~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR 310 (325)
++.|+||+++|.+ +-.+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3469999999943 23456668999999999999999999999997
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1e-11 Score=116.85 Aligned_cols=56 Identities=36% Similarity=0.965 Sum_probs=47.2
Q ss_pred cccCCCCCccccccccc-ccCC---------CceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 259 EHVLSNEDAECCICLSA-YDDG---------VELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 259 ~~~~~~ed~~C~ICL~~-y~~~---------~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
+.++..+|..|.||+++ ++.+ .+.+.|||||.||..|++.|+++.++||+||.++.
T Consensus 280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 44556678899999999 5544 24578999999999999999999999999999954
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.9e-11 Score=108.07 Aligned_cols=57 Identities=28% Similarity=0.725 Sum_probs=48.8
Q ss_pred CcccCCCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491 258 NEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 258 ~~~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
.+....+.+..|.+||+.-+++ ..+||||+|+..||.+|+..++.||+||....++.
T Consensus 231 ~~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 3445556678999999997777 68999999999999999999999999999887653
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.05 E-value=1.7e-10 Score=101.21 Aligned_cols=51 Identities=37% Similarity=0.879 Sum_probs=42.8
Q ss_pred CCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc----------------CCCCccccccccCC
Q 020491 263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----------------NATCPLCKYNILKS 316 (325)
Q Consensus 263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~----------------~~tCPlCR~~I~~~ 316 (325)
..++.+|+||++.++++ ..++|+|.||..||.+|+.. ...||+||.++...
T Consensus 15 ~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 34568999999998877 67899999999999999852 35799999999653
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.02 E-value=2.2e-10 Score=76.43 Aligned_cols=44 Identities=50% Similarity=1.112 Sum_probs=37.0
Q ss_pred ccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccc
Q 020491 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNI 313 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I 313 (325)
+|+||++.+ .+.....+|+|.||.+|+++|++. +..||.||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 344455669999999999999997 78899999764
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.99 E-value=2.3e-10 Score=79.56 Aligned_cols=47 Identities=40% Similarity=0.875 Sum_probs=39.7
Q ss_pred CCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCcccccccc
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
|+..|.||++...+ ...+||+|. |+.+|+++|++.+..||+||++|.
T Consensus 1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35689999998554 588999999 999999999999999999999885
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.93 E-value=6.8e-10 Score=84.85 Aligned_cols=50 Identities=36% Similarity=0.806 Sum_probs=39.9
Q ss_pred CCccccccccccc--------CCC--ceEEeCcCCccchHHHHHHHhc---CCCCcccccccc
Q 020491 265 EDAECCICLSAYD--------DGV--ELRELPCGHHFHCACVDKWLYI---NATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~--------~~~--~lr~LPC~H~FH~~CI~~WL~~---~~tCPlCR~~I~ 314 (325)
+|+.|.||...|+ .|+ .+..-.|+|.||..||.+|+.. +.+||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4678999999988 223 3444459999999999999985 578999998764
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.93 E-value=6.4e-10 Score=73.27 Aligned_cols=39 Identities=44% Similarity=1.056 Sum_probs=33.8
Q ss_pred cccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccc
Q 020491 269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 309 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlC 309 (325)
|+||++.+.+ .+..++|+|.|+.+|+.+|++.+.+||.|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999877 45688999999999999999999999998
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.2e-09 Score=97.77 Aligned_cols=50 Identities=32% Similarity=0.714 Sum_probs=42.4
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc---CCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~---~~tCPlCR~~I~~~ 316 (325)
...-+|.|||+.=+|. ..+.|+|.|++.||.+||.. +..||+||..|..+
T Consensus 45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 4557999999996666 77889999999999999986 35689999998753
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.6e-10 Score=114.53 Aligned_cols=57 Identities=35% Similarity=0.814 Sum_probs=49.3
Q ss_pred CCCCCcccccccccccCCCc--eEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491 262 LSNEDAECCICLSAYDDGVE--LRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 318 (325)
Q Consensus 262 ~~~ed~~C~ICL~~y~~~~~--lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 318 (325)
....+..|.||++++..+++ .+.|||+|.||..|+.+|+++.++||.||..+..+..
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL 345 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence 44567899999999998765 7899999999999999999999999999996655433
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.77 E-value=4.9e-09 Score=70.91 Aligned_cols=44 Identities=32% Similarity=0.773 Sum_probs=39.6
Q ss_pred ccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccc
Q 020491 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY 311 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~ 311 (325)
.|.||.++|.++...+.++|+|.|+.+|+++.......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999977778899999999999999999867789999985
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.74 E-value=8.4e-09 Score=66.27 Aligned_cols=38 Identities=50% Similarity=1.113 Sum_probs=33.2
Q ss_pred cccccccccCCCceEEeCcCCccchHHHHHHHh-cCCCCccc
Q 020491 269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLC 309 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-~~~tCPlC 309 (325)
|+||++. ......+||+|.||.+|+++|++ .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899988 44568899999999999999998 66789987
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.73 E-value=5.7e-09 Score=92.84 Aligned_cols=51 Identities=25% Similarity=0.692 Sum_probs=38.2
Q ss_pred CCcccccccccccCCC-----ceEEe-CcCCccchHHHHHHHhcC------CCCccccccccC
Q 020491 265 EDAECCICLSAYDDGV-----ELREL-PCGHHFHCACVDKWLYIN------ATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~-----~lr~L-PC~H~FH~~CI~~WL~~~------~tCPlCR~~I~~ 315 (325)
++.+|+|||+..-+.. .-..| +|+|.||..||++|.+.+ .+||+||.....
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 4579999998864321 12345 599999999999999853 359999987653
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.71 E-value=6e-09 Score=69.12 Aligned_cols=39 Identities=51% Similarity=1.187 Sum_probs=34.6
Q ss_pred cccccccccCCCceEEeCcCCccchHHHHHHHh--cCCCCccc
Q 020491 269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLY--INATCPLC 309 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~--~~~tCPlC 309 (325)
|+||++.+.++. +.++|+|.|+.+|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988774 5889999999999999999 55679998
No 19
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2e-08 Score=97.85 Aligned_cols=50 Identities=28% Similarity=0.767 Sum_probs=40.6
Q ss_pred CcccccccccccCC--------------CceEEeCcCCccchHHHHHHHh-cCCCCccccccccC
Q 020491 266 DAECCICLSAYDDG--------------VELRELPCGHHFHCACVDKWLY-INATCPLCKYNILK 315 (325)
Q Consensus 266 d~~C~ICL~~y~~~--------------~~lr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~ 315 (325)
..+|+||+.+.+-. .....+||+|+||..|+.+|+. .+-.||.||.+++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 36899999987621 1234569999999999999999 67799999998864
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.65 E-value=1.7e-08 Score=67.66 Aligned_cols=38 Identities=39% Similarity=0.989 Sum_probs=30.5
Q ss_pred cccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccc
Q 020491 269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLC 309 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlC 309 (325)
|+||++-|+++ ..|+|+|.|...||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 889999999999999999754 369988
No 21
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=9.6e-09 Score=93.41 Aligned_cols=53 Identities=32% Similarity=0.694 Sum_probs=45.3
Q ss_pred CCCcccccccccccCCC-------ceEEeCcCCccchHHHHHHHh--cCCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGV-------ELRELPCGHHFHCACVDKWLY--INATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~-------~lr~LPC~H~FH~~CI~~WL~--~~~tCPlCR~~I~~~ 316 (325)
.+|..|++|=..+...+ +...|.|||.||..||..|.- ++++||-||..+.-+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 45689999999887665 778999999999999999985 689999999887543
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.61 E-value=3.9e-08 Score=71.13 Aligned_cols=46 Identities=26% Similarity=0.483 Sum_probs=41.6
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
-.|+||.+-++++ ..+||||.|...||.+|++.+.+||.|+.++..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4699999999987 678999999999999999999999999998854
No 23
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.1e-08 Score=86.26 Aligned_cols=51 Identities=29% Similarity=0.661 Sum_probs=43.5
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
+-..|+|||+.|.+... ..+.|||+|+++||..-++....||+|++.|.++
T Consensus 130 ~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34789999999887643 3477999999999999999999999999877654
No 24
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.55 E-value=5.2e-08 Score=67.45 Aligned_cols=42 Identities=33% Similarity=0.786 Sum_probs=33.7
Q ss_pred ccccccccccCCCceEEeCcC-----CccchHHHHHHHhc--CCCCcccc
Q 020491 268 ECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLCK 310 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CI~~WL~~--~~tCPlCR 310 (325)
.|-||++ ++++++....||+ |++|.+|+++|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 4445555688986 99999999999965 45899995
No 25
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.54 E-value=6.1e-08 Score=72.44 Aligned_cols=49 Identities=31% Similarity=0.623 Sum_probs=36.6
Q ss_pred ccccccccccc-----------CCCceEE--eCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 267 AECCICLSAYD-----------DGVELRE--LPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 267 ~~C~ICL~~y~-----------~~~~lr~--LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
+.|+||...|. .+++... --|+|.||..||.+||..+..||++|+.-.-
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 45666665443 4554333 3499999999999999999999999987543
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=1e-07 Score=93.01 Aligned_cols=49 Identities=29% Similarity=0.637 Sum_probs=43.4
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
....|+||++.|.+. ..+||+|.||..||..|+.....||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 457999999999877 4689999999999999999888999999988653
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.4e-07 Score=69.97 Aligned_cols=49 Identities=35% Similarity=0.831 Sum_probs=36.8
Q ss_pred CcccccccccccC--------CCceE-Ee-CcCCccchHHHHHHHhc---CCCCcccccccc
Q 020491 266 DAECCICLSAYDD--------GVELR-EL-PCGHHFHCACVDKWLYI---NATCPLCKYNIL 314 (325)
Q Consensus 266 d~~C~ICL~~y~~--------~~~lr-~L-PC~H~FH~~CI~~WL~~---~~tCPlCR~~I~ 314 (325)
+.+|-||...|+. +|..- .+ -|.|.||..||.+|+.. .+.||.||+.-.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3589999999882 33222 22 39999999999999975 367999998653
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.27 E-value=6.3e-07 Score=60.24 Aligned_cols=38 Identities=34% Similarity=0.746 Sum_probs=23.0
Q ss_pred cccccccccCCC-ceEEeCcCCccchHHHHHHHhcCC----CCc
Q 020491 269 CCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINA----TCP 307 (325)
Q Consensus 269 C~ICL~~y~~~~-~lr~LPC~H~FH~~CI~~WL~~~~----tCP 307 (325)
|+||.+ |.+++ .-+.|||+|.|..+|++++++.+. .||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86644 557899999999999999998542 576
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=6.3e-07 Score=81.73 Aligned_cols=51 Identities=29% Similarity=0.710 Sum_probs=44.0
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHH-HHhcCCC-CccccccccCCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDK-WLYINAT-CPLCKYNILKSS 317 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~-WL~~~~t-CPlCR~~I~~~~ 317 (325)
..|..|.||++..+.. ..+||+|+|+..||-. |-+++.. ||+||+.+..+.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 5678999999996666 7899999999999999 9988876 999999876653
No 30
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.25 E-value=4.9e-07 Score=87.64 Aligned_cols=50 Identities=34% Similarity=0.950 Sum_probs=41.8
Q ss_pred CCCCcccccccccccCCC-ceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 263 SNEDAECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 263 ~~ed~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
..|-.+|++||+.+.+.. .++...|+|.||..|+.+|- ..+||+||+--.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 345689999999998765 56677799999999999996 678999998655
No 31
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.14 E-value=6.3e-07 Score=93.24 Aligned_cols=51 Identities=33% Similarity=0.781 Sum_probs=38.2
Q ss_pred CCCcccccccccccCCC---ceEEeC-cCCccchHHHHHHHhc--CCCCcccccccc
Q 020491 264 NEDAECCICLSAYDDGV---ELRELP-CGHHFHCACVDKWLYI--NATCPLCKYNIL 314 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~---~lr~LP-C~H~FH~~CI~~WL~~--~~tCPlCR~~I~ 314 (325)
.+-.+|+||..-..--| .-...| |.|-||..|+.+|++. +.+||+||.+++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45679999998776211 111223 7899999999999986 578999998875
No 32
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.7e-06 Score=67.87 Aligned_cols=48 Identities=29% Similarity=0.634 Sum_probs=35.3
Q ss_pred Cccccccccccc------------CCCceEE--eCcCCccchHHHHHHHhcCCCCccccccc
Q 020491 266 DAECCICLSAYD------------DGVELRE--LPCGHHFHCACVDKWLYINATCPLCKYNI 313 (325)
Q Consensus 266 d~~C~ICL~~y~------------~~~~lr~--LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 313 (325)
-+.|+||..-+- ..++... --|+|.||--||.+||+.+..||||.++-
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 367999873321 2233333 24999999999999999999999997653
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=3.6e-06 Score=79.27 Aligned_cols=53 Identities=28% Similarity=0.614 Sum_probs=40.1
Q ss_pred CCccccccccc-ccCCC-ceEEeCcCCccchHHHHHHHh-cCCCCccccccccCCC
Q 020491 265 EDAECCICLSA-YDDGV-ELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKSS 317 (325)
Q Consensus 265 ed~~C~ICL~~-y~~~~-~lr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~~~ 317 (325)
++..|++|..+ |-+++ .+..-+|+|.||..||+..+. ....||.|+..+.++.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 34689999986 55554 233337999999999999664 4568999999887764
No 34
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.01 E-value=3.2e-06 Score=63.39 Aligned_cols=49 Identities=24% Similarity=0.472 Sum_probs=39.5
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~ 316 (325)
+.-.|+|+.+-+.|+ ..+|+||.|-..||.+|++. +.+||+|+..+...
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 456899999999998 78999999999999999998 89999999988754
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.01 E-value=1.2e-06 Score=65.22 Aligned_cols=50 Identities=36% Similarity=0.814 Sum_probs=25.0
Q ss_pred cccccccccccCCCceEEe-----CcCCccchHHHHHHHhc--C---------CCCccccccccCC
Q 020491 267 AECCICLSAYDDGVELREL-----PCGHHFHCACVDKWLYI--N---------ATCPLCKYNILKS 316 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L-----PC~H~FH~~CI~~WL~~--~---------~tCPlCR~~I~~~ 316 (325)
.+|.||.+...+++++-.+ .|++.||..|+.+||.. + .+||.|+++|.-+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 5899999987644332222 37899999999999973 1 2599999988643
No 36
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.1e-06 Score=80.76 Aligned_cols=44 Identities=41% Similarity=1.032 Sum_probs=35.4
Q ss_pred cccccccccccCCCceEEeC-cCCccchHHHHHHHhc---CCCCcccc
Q 020491 267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI---NATCPLCK 310 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~---~~tCPlCR 310 (325)
+.|.||.+-+....++.... |+|+||..|+.+|+.. +.+||+||
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 78999944444444666666 9999999999999985 46899999
No 37
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=9.2e-06 Score=80.32 Aligned_cols=48 Identities=29% Similarity=0.700 Sum_probs=38.9
Q ss_pred CcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-----CCCccccccccCC
Q 020491 266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-----ATCPLCKYNILKS 316 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-----~tCPlCR~~I~~~ 316 (325)
+..|+|||+...-. ..+-|||+||..||-+.+... ..||+|+..|..+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 78999999995544 344599999999999988654 4699999988763
No 38
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.3e-05 Score=76.24 Aligned_cols=54 Identities=33% Similarity=0.678 Sum_probs=44.3
Q ss_pred CCCCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccCCCCc
Q 020491 263 SNEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKSSSN 319 (325)
Q Consensus 263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~~~~~ 319 (325)
+++..+|-|||++-.|- ..|||.|. .+.+|.+.-.-+...||+||++|.+--+.
T Consensus 287 ~~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i 341 (349)
T KOG4265|consen 287 SESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI 341 (349)
T ss_pred ccCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence 35578999999995554 89999998 89999999776788899999999764443
No 39
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.81 E-value=7e-06 Score=77.19 Aligned_cols=48 Identities=29% Similarity=0.732 Sum_probs=43.8
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
-.|.||.+=|.-+ ..+||+|.|+.-||.+.|..+..||+|+..+.+..
T Consensus 24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 5899999999888 78899999999999999999999999999887653
No 40
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=7.5e-06 Score=75.27 Aligned_cols=45 Identities=36% Similarity=0.827 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY 311 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~ 311 (325)
.+...|+||++.|.+. +.+||+|.|+..|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3557999999999999 88999999999999999986678999993
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.72 E-value=6.6e-06 Score=84.43 Aligned_cols=51 Identities=27% Similarity=0.528 Sum_probs=45.8
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
....|++||..+.++...-.-+|+|+||..||+.|-+.-++||+||....+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 346899999999999887888899999999999999999999999987654
No 42
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.56 E-value=3.9e-05 Score=70.89 Aligned_cols=46 Identities=28% Similarity=0.642 Sum_probs=41.7
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
..|-||-+-+.-+ ..++|+|.|+.-||..-|.....||+||.+-.+
T Consensus 26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 5799999998877 678999999999999999999999999988654
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.50 E-value=3e-05 Score=71.93 Aligned_cols=52 Identities=29% Similarity=0.777 Sum_probs=43.4
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHh-----------------------cCCCCccccccccCCCC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----------------------INATCPLCKYNILKSSS 318 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-----------------------~~~tCPlCR~~I~~~~~ 318 (325)
-.|.|||--|.+++....++|.|+||..|+...|. ..+.||+||..|....+
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 47999999999999999999999999999865543 13569999999975443
No 44
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00011 Score=70.84 Aligned_cols=48 Identities=38% Similarity=0.912 Sum_probs=37.4
Q ss_pred CcccccccccccCCC--ceEEeCcCCccchHHHHHHHhc--CCCCccccccc
Q 020491 266 DAECCICLSAYDDGV--ELRELPCGHHFHCACVDKWLYI--NATCPLCKYNI 313 (325)
Q Consensus 266 d~~C~ICL~~y~~~~--~lr~LPC~H~FH~~CI~~WL~~--~~tCPlCR~~I 313 (325)
...|+|||+.|+-.. .+..|.|+|.|-.+||.+||-+ +..||+|+..-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 368999999998544 3344559999999999999953 35799997643
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=8.6e-05 Score=71.33 Aligned_cols=53 Identities=28% Similarity=0.777 Sum_probs=40.4
Q ss_pred CCCcccccccccccCCC----ceEEeC-cCCccchHHHHHHH--hc-----CCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGV----ELRELP-CGHHFHCACVDKWL--YI-----NATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~----~lr~LP-C~H~FH~~CI~~WL--~~-----~~tCPlCR~~I~~~ 316 (325)
..+.+|.||++...+.. ....|| |+|.|+.+||++|- ++ +..||.||......
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 45689999999866543 123456 99999999999998 33 46799999876543
No 46
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=5.4e-05 Score=52.77 Aligned_cols=45 Identities=31% Similarity=0.663 Sum_probs=33.8
Q ss_pred cccccccccccCCCceEEeCcCCc-cchHHHHHHHh-cCCCCcccccccc
Q 020491 267 AECCICLSAYDDGVELRELPCGHH-FHCACVDKWLY-INATCPLCKYNIL 314 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~-~~~tCPlCR~~I~ 314 (325)
++|.||.+.-.|. ....|+|. .+-+|-.+-++ .+..||+||.+|.
T Consensus 8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 7899998874443 34569997 66677655544 7899999999885
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=6e-05 Score=71.46 Aligned_cols=54 Identities=30% Similarity=0.556 Sum_probs=44.6
Q ss_pred CCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhc-CCCCccccccccCCCCcc
Q 020491 264 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI-NATCPLCKYNILKSSSNQ 320 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~~~ 320 (325)
..+..|+|||+-++.. +..+ |.|.|+.+||.+=++. +.+||.||+.+..+.+..
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr 96 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLR 96 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCC
Confidence 3457899999998776 5566 9999999999999874 789999999987765554
No 48
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0002 Score=66.66 Aligned_cols=48 Identities=27% Similarity=0.580 Sum_probs=39.8
Q ss_pred CcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCC
Q 020491 266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 316 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~ 316 (325)
+++|+||+.+-.-+ ..|+|+|.|+-.||..=.+. +.+||+||.+|.+.
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 47999999985554 78999999999999876654 56799999999753
No 49
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.05 E-value=0.00018 Score=68.96 Aligned_cols=48 Identities=31% Similarity=0.674 Sum_probs=40.0
Q ss_pred CcccccccccccC-CCceEEeCcCCccchHHHHHHHhcC--CCCccccccc
Q 020491 266 DAECCICLSAYDD-GVELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNI 313 (325)
Q Consensus 266 d~~C~ICL~~y~~-~~~lr~LPC~H~FH~~CI~~WL~~~--~tCPlCR~~I 313 (325)
+--|..|=+.|-. ++.+..|||.|+||..|+.+.|.+| .+||-||+-+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3579999988864 4578899999999999999999877 4799999533
No 50
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.04 E-value=0.00016 Score=52.44 Aligned_cols=47 Identities=21% Similarity=0.618 Sum_probs=23.4
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
-.|++|.+-++++ +....|.|.|++.||.+-+ ...||+|+.+--.++
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~--~~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCI--GSECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGT--TTB-SSS--B-S-SS
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhc--CCCCCCcCChHHHHH
Confidence 4699999987766 3345699999999998844 456999998775443
No 51
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.98 E-value=0.00036 Score=57.97 Aligned_cols=36 Identities=25% Similarity=0.581 Sum_probs=32.0
Q ss_pred CcccccccccccCCCceEEeCcC------CccchHHHHHHHh
Q 020491 266 DAECCICLSAYDDGVELRELPCG------HHFHCACVDKWLY 301 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~------H~FH~~CI~~WL~ 301 (325)
..+|.||++...+++.+..++|+ |.||.+|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 36899999999997788899987 9999999999943
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00059 Score=66.93 Aligned_cols=49 Identities=35% Similarity=0.863 Sum_probs=43.6
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
..+.+|+||..-+.+. ..+||+|.|+..||++=+..+..||+||..+.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4568999999988887 677999999999999988889999999999876
No 53
>PHA02862 5L protein; Provisional
Probab=96.77 E-value=0.00089 Score=56.08 Aligned_cols=45 Identities=29% Similarity=0.677 Sum_probs=35.0
Q ss_pred cccccccccccCCCceEEeCcC-----CccchHHHHHHHhc--CCCCccccccccC
Q 020491 267 AECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLCKYNILK 315 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CI~~WL~~--~~tCPlCR~~I~~ 315 (325)
+.|=||.++-+++ .-||. ..-|.+|+.+|++. +.+||+||.+..-
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 5799999984333 35654 78999999999974 5689999988753
No 54
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.75 E-value=0.00054 Score=65.99 Aligned_cols=46 Identities=30% Similarity=0.805 Sum_probs=38.7
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhc--CCCCccccccccC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNILK 315 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~--~~tCPlCR~~I~~ 315 (325)
.-|-||-+. +..++.=||+|..+..|+..|-.. .++||.||.+|..
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 469999776 445678899999999999999854 5899999999864
No 55
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.69 E-value=0.0011 Score=45.46 Aligned_cols=40 Identities=30% Similarity=0.853 Sum_probs=28.0
Q ss_pred cccccccccCCCceEEeCcC-----CccchHHHHHHHhc--CCCCccc
Q 020491 269 CCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLC 309 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~LPC~-----H~FH~~CI~~WL~~--~~tCPlC 309 (325)
|-||+++-++++ .-..||+ .+-|.+|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999877666 3457865 48999999999974 5679988
No 56
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.63 E-value=0.0012 Score=71.94 Aligned_cols=55 Identities=29% Similarity=0.628 Sum_probs=45.5
Q ss_pred cCCCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----------CCCccccccccC
Q 020491 261 VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----------ATCPLCKYNILK 315 (325)
Q Consensus 261 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----------~tCPlCR~~I~~ 315 (325)
.....|+.|-||..+--......+|-|+|+||..|...-|.++ -.||+|+.+|.+
T Consensus 3481 tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3481 TKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3456788999999988788888999999999999998766543 269999998864
No 57
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0019 Score=57.91 Aligned_cols=54 Identities=26% Similarity=0.575 Sum_probs=44.2
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc--------CCCCccccccccCCCCc
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPLCKYNILKSSSN 319 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~--------~~tCPlCR~~I~~~~~~ 319 (325)
-+..|..|-...+.+|.+| |-|-|.||.+|+++|-.. ...||-|..+|.+..+.
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 3467999999999998764 679999999999999763 24699999999876543
No 58
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.00078 Score=57.41 Aligned_cols=38 Identities=34% Similarity=0.748 Sum_probs=34.5
Q ss_pred CCCcccCCCCCcccccccccccCCCceEEeCcCCccch
Q 020491 256 TPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHC 293 (325)
Q Consensus 256 ~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~ 293 (325)
++++.+++.+.-+|.|||++++.++.+..|||-.+||+
T Consensus 167 sYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 167 SYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 45677888888999999999999999999999999996
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.55 E-value=0.0012 Score=47.16 Aligned_cols=40 Identities=25% Similarity=0.690 Sum_probs=28.7
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhc--CCCCcc
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPL 308 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~--~~tCPl 308 (325)
..|+|.+..|+++ ++...|+|.|-++.|.+|++. +..||.
T Consensus 12 ~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 12 LKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 6899999998866 566789999999999999944 456998
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.40 E-value=0.0016 Score=64.12 Aligned_cols=52 Identities=31% Similarity=0.743 Sum_probs=44.1
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
.++..|+||.....++-.. ..|+|.|+..|+.+|+..+..||.|+..+....
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhh
Confidence 4568999999999888322 579999999999999999999999988876543
No 61
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.17 E-value=0.0041 Score=53.11 Aligned_cols=48 Identities=29% Similarity=0.661 Sum_probs=35.5
Q ss_pred CCCcccccccccccCCCceEEeCcC--C---ccchHHHHHHHhc--CCCCccccccccC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCG--H---HFHCACVDKWLYI--NATCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~--H---~FH~~CI~~WL~~--~~tCPlCR~~I~~ 315 (325)
..+..|=||.++.. +. .-||. . .-|.+|+++|+.. +.+||+|+++..-
T Consensus 6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 45578999998843 22 24755 4 6699999999975 4679999887643
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.91 E-value=0.0027 Score=55.88 Aligned_cols=44 Identities=25% Similarity=0.547 Sum_probs=39.2
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccc
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 313 (325)
-.|.||-.+|+.+ ..+.|+|+|+..|.-+=.+...+|-+|-...
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 4899999999998 6788999999999999888899999996643
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0061 Score=59.22 Aligned_cols=46 Identities=30% Similarity=0.725 Sum_probs=38.7
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcC--------CCCcccccc
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--------ATCPLCKYN 312 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~--------~tCPlCR~~ 312 (325)
-.|+||+++....+-...|||+|+|++.|....+.+. -.||-++..
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 6899999998877888999999999999999998742 358877543
No 64
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.42 E-value=0.0056 Score=48.55 Aligned_cols=34 Identities=26% Similarity=0.763 Sum_probs=28.4
Q ss_pred CCCCcccccccccccCCCceEEeCcCCccchHHHH
Q 020491 263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVD 297 (325)
Q Consensus 263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~ 297 (325)
.+++..|++|-..+.+ ......||+|.||..|++
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3455789999999877 567788999999999975
No 65
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.0057 Score=63.59 Aligned_cols=48 Identities=25% Similarity=0.609 Sum_probs=39.1
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCCC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS 317 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~ 317 (325)
-.|+.|-..++|- ....|+|.||-+||.+-+.. ...||.|......++
T Consensus 644 LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 5899999776665 44559999999999999975 467999998887654
No 66
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.14 E-value=0.012 Score=40.37 Aligned_cols=44 Identities=25% Similarity=0.541 Sum_probs=20.5
Q ss_pred cccccccccCCCceEEeC--cCCccchHHHHHHHh-cCCCCccccccc
Q 020491 269 CCICLSAYDDGVELRELP--CGHHFHCACVDKWLY-INATCPLCKYNI 313 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~LP--C~H~FH~~CI~~WL~-~~~tCPlCR~~I 313 (325)
|++|.+++...+ ...+| |++..+..|...=++ .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984333 34455 778888888776664 478899999864
No 67
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.0077 Score=56.18 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=41.4
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
..|-||-..|.++ ..+.|+|+|+..|--+=++....|++|.+.+-.
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccccc
Confidence 4699999999998 788899999999999999999999999887644
No 68
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.036 Score=51.31 Aligned_cols=51 Identities=27% Similarity=0.499 Sum_probs=39.0
Q ss_pred CCCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC--CCCcccccccc
Q 020491 262 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNIL 314 (325)
Q Consensus 262 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~--~tCPlCR~~I~ 314 (325)
..+.+.+|++|=+.=.. .-...+|+|.|+-.||..=+.-. -+||.|-.++.
T Consensus 235 ~~t~~~~C~~Cg~~Pti--P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTI--PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCC--CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34567899999877333 34556799999999999866533 58999998886
No 69
>PHA03096 p28-like protein; Provisional
Probab=94.52 E-value=0.018 Score=54.21 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=33.6
Q ss_pred cccccccccccCCC----ceEEeC-cCCccchHHHHHHHhcC---CC---Cccccccc
Q 020491 267 AECCICLSAYDDGV----ELRELP-CGHHFHCACVDKWLYIN---AT---CPLCKYNI 313 (325)
Q Consensus 267 ~~C~ICL~~y~~~~----~lr~LP-C~H~FH~~CI~~WL~~~---~t---CPlCR~~I 313 (325)
.+|.||++.-.... --..|| |+|.|+..||..|-..+ .+ ||.|+.-+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 68999998866432 234577 99999999999998743 33 55555443
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.51 E-value=0.019 Score=60.26 Aligned_cols=52 Identities=33% Similarity=0.676 Sum_probs=38.9
Q ss_pred CCCCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcC-------CCCccccccc
Q 020491 262 LSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN-------ATCPLCKYNI 313 (325)
Q Consensus 262 ~~~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~-------~tCPlCR~~I 313 (325)
++.+..+|.||.+.+...+.+=.-. |=|+||..||.+|-+.. =.||-|++..
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 3455679999999988776543332 66999999999998742 2599998543
No 71
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.0028 Score=60.98 Aligned_cols=51 Identities=24% Similarity=0.619 Sum_probs=46.5
Q ss_pred cccccccccccCC-CceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491 267 AECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 267 ~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
..|+||-.+|+.. +++..+-|+|.+|.+|+.+||..+..||-|+..+....
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 5799999999988 88899999999999999999999999999999987653
No 72
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.36 E-value=0.017 Score=57.73 Aligned_cols=52 Identities=29% Similarity=0.666 Sum_probs=40.8
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHh-----cCCCCccccccccCCCCc
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----INATCPLCKYNILKSSSN 319 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-----~~~tCPlCR~~I~~~~~~ 319 (325)
+..+|.+|-+.-++. .+..|.|.|++-||.+... .|-+||.|-..+....+.
T Consensus 535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse 591 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSE 591 (791)
T ss_pred CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccc
Confidence 457899998884444 7788999999999988875 367999998877655444
No 73
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.12 E-value=0.05 Score=46.51 Aligned_cols=37 Identities=30% Similarity=0.595 Sum_probs=24.3
Q ss_pred CCcccccccccccCCCc---------eEEeCcC-CccchHHHHHHHh
Q 020491 265 EDAECCICLSAYDDGVE---------LRELPCG-HHFHCACVDKWLY 301 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~---------lr~LPC~-H~FH~~CI~~WL~ 301 (325)
||+.|+|||+-=.+... .|-.-|+ -+=|..|+|+.-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 46899999987554421 2222254 4569999999765
No 74
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.051 Score=52.18 Aligned_cols=46 Identities=26% Similarity=0.548 Sum_probs=33.7
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
+-+..|.||+++..+ ...+||+|.-+ |..-= +...+||+||..|..
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 344689999999766 47899999854 55543 335569999988753
No 75
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.63 E-value=0.025 Score=53.64 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=40.4
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
....|.+|-.=+-|... ..-|=|.|++.||-+-|..+.+||.|.-.|.+.
T Consensus 14 ~~itC~LC~GYliDATT--I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATT--ITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchh--HHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 34689999777666632 234999999999999999999999998877654
No 76
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.45 E-value=0.061 Score=50.80 Aligned_cols=50 Identities=30% Similarity=0.680 Sum_probs=38.8
Q ss_pred CcccccccccccCCCc-eEEeCcC-----CccchHHHHHHHh--cCCCCccccccccC
Q 020491 266 DAECCICLSAYDDGVE-LRELPCG-----HHFHCACVDKWLY--INATCPLCKYNILK 315 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~-lr~LPC~-----H~FH~~CI~~WL~--~~~tCPlCR~~I~~ 315 (325)
+..|=||..+...... .-..||. +..|..|++.|+. .+.+|.+|++....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 5789999998654432 4567876 7789999999998 56789999886644
No 77
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.045 Score=52.32 Aligned_cols=48 Identities=27% Similarity=0.629 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
.||..|+||... +-.-.-.||+|-=+..||.+-+..+..|=.||..+.
T Consensus 420 sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 578899999766 444467899999999999999999999999998876
No 78
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.31 E-value=0.041 Score=51.43 Aligned_cols=45 Identities=29% Similarity=0.649 Sum_probs=38.9
Q ss_pred cccccccccccCCC-ceEEeCcCCccchHHHHHHHhcCCCCccccc
Q 020491 267 AECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKY 311 (325)
Q Consensus 267 ~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~ 311 (325)
..|+||.+.+-+.. .+..++|+|.-|..|..+-...+-+||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 45999998877655 5678999999999999998888899999988
No 79
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.018 Score=53.66 Aligned_cols=44 Identities=30% Similarity=0.707 Sum_probs=33.5
Q ss_pred CCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
.+.-|.||++. +-....|+|+|. =+.+|-.. -+.||+||+.|.+
T Consensus 299 ~~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 299 TRRLCAICMDA---PRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHHhcC---CcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence 37889999988 556689999996 45566433 3589999988754
No 80
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=0.1 Score=47.62 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=46.6
Q ss_pred CCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491 265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
....|++|.+.+.+...+..| ||+|+|..+|+.+..+....||+|-.++.+.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 457899999999999988888 59999999999999999999999988776543
No 81
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.1 Score=45.36 Aligned_cols=53 Identities=32% Similarity=0.720 Sum_probs=35.8
Q ss_pred cccccccccccCCC----ceEEeCcCCccchHHHHHHHhc----C-------CCCccccccccCCCCc
Q 020491 267 AECCICLSAYDDGV----ELRELPCGHHFHCACVDKWLYI----N-------ATCPLCKYNILKSSSN 319 (325)
Q Consensus 267 ~~C~ICL~~y~~~~----~lr~LPC~H~FH~~CI~~WL~~----~-------~tCPlCR~~I~~~~~~ 319 (325)
-.|.||..---+|. ..--..|+.-||.-|+..||+. + ..||.|..+|.-+.++
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmSg 233 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMSG 233 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeeccC
Confidence 45777754222322 2233569999999999999973 1 4699999998765543
No 82
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=0.08 Score=47.70 Aligned_cols=39 Identities=26% Similarity=0.608 Sum_probs=29.7
Q ss_pred cccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCcccccccc
Q 020491 269 CCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
|-.|-++ +..+..|||+|+ ++..|=.. -.+||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888666 667889999986 77778665 345999988654
No 83
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.70 E-value=0.068 Score=36.37 Aligned_cols=33 Identities=21% Similarity=0.549 Sum_probs=23.6
Q ss_pred EeCcC-CccchHHHHHHHhcCCCCccccccccCC
Q 020491 284 ELPCG-HHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 284 ~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
...|+ |+.+..|+..-|.++..||+|+.+++.+
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 34586 9999999999999999999999998754
No 84
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.62 E-value=0.09 Score=49.26 Aligned_cols=45 Identities=29% Similarity=0.763 Sum_probs=35.0
Q ss_pred cccccccccccCCCceEEeC-cCCccchHHHHHHHh-cCCCCccc-ccccc
Q 020491 267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-INATCPLC-KYNIL 314 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~-~~~tCPlC-R~~I~ 314 (325)
..|+.|-.-..+. ..+| |+|.|+.+||..=|. ....||.| |.+|.
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 5799988776666 4567 889999999997665 56789999 55554
No 85
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=0.4 Score=45.64 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=38.1
Q ss_pred cCCCCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcCCCCcccccc
Q 020491 261 VLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYN 312 (325)
Q Consensus 261 ~~~~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~ 312 (325)
.++.++..|++|+..-.++ ..+. =|-+||-.||-+.++..+.||+=-.+
T Consensus 295 ~l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred cCCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 3455678999999996665 3343 47999999999999999999975443
No 86
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.96 E-value=0.095 Score=35.09 Aligned_cols=41 Identities=24% Similarity=0.647 Sum_probs=21.4
Q ss_pred cccccccccCCCceEEeCcCCccchHHHHHHHhcCC--CCccc
Q 020491 269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA--TCPLC 309 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~--tCPlC 309 (325)
|.+|-+-...|.....-.|+=.+|..|++++++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 455555555553222223887899999999998655 79987
No 87
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.17 Score=47.67 Aligned_cols=47 Identities=34% Similarity=0.670 Sum_probs=39.0
Q ss_pred cccccccccccCCC---ceEEeCcCCccchHHHHHHHhc-CCCCccccccc
Q 020491 267 AECCICLSAYDDGV---ELRELPCGHHFHCACVDKWLYI-NATCPLCKYNI 313 (325)
Q Consensus 267 ~~C~ICL~~y~~~~---~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I 313 (325)
.+|-||=++|..++ ..|.|.|+|.|...|+.+-+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999999774 3566779999999999987765 35799999984
No 88
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.76 E-value=0.11 Score=48.88 Aligned_cols=32 Identities=31% Similarity=0.751 Sum_probs=25.2
Q ss_pred eEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 282 LRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 282 lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
-|..||+|+|+.+|-.. .....||+|-..|.+
T Consensus 104 GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 104 GRMIPCKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred ecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence 37899999999999754 335689999777654
No 89
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=89.66 E-value=0.28 Score=51.63 Aligned_cols=56 Identities=21% Similarity=0.555 Sum_probs=41.4
Q ss_pred cCCCCCcccccccccccCCCceEEeCcC-----CccchHHHHHHHhcC--CCCccccccccCCC
Q 020491 261 VLSNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYIN--ATCPLCKYNILKSS 317 (325)
Q Consensus 261 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~ 317 (325)
+..++++.|-||..+=..++++ --||. ...|.+|+.+|+.-+ ..|-+|++++.-++
T Consensus 7 ~mN~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 7 PMNEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CCCccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 3456778999999886555543 34655 679999999999744 46999999886443
No 90
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.42 E-value=0.43 Score=44.39 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=41.2
Q ss_pred CCCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
.....|+|...+|........| ||||+|-..++++- +....||+|-.+....
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 3447899999999776666666 79999999999996 3456799998876543
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.15 E-value=0.22 Score=35.04 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=32.8
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
..|-.|... +.+-..+||+|.-...|.+-+ +-+-||+|-.++..++
T Consensus 8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEcccc---ccccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence 345555444 334478999999999997764 4567999988886543
No 92
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.72 E-value=0.13 Score=52.70 Aligned_cols=45 Identities=36% Similarity=0.593 Sum_probs=35.6
Q ss_pred cccccccccccCCC-ceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 267 AECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 267 ~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
..|.||+..|.... +-+-|-|+|.-+..|+.. ..|++|| |+.+=.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~De~ 57 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRDED 57 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCcccc
Confidence 57999999988765 445566999999999987 4588999 877643
No 93
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.47 E-value=0.7 Score=44.32 Aligned_cols=46 Identities=35% Similarity=0.862 Sum_probs=35.0
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHH--HhcCCCCcccccc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKW--LYINATCPLCKYN 312 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~W--L~~~~tCPlCR~~ 312 (325)
++...|-||-....- .-.+||+|-.+--|--.- |.....||+||.+
T Consensus 59 Een~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 445689999877443 368999999988897553 3467889999975
No 94
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=88.44 E-value=0.71 Score=32.47 Aligned_cols=43 Identities=28% Similarity=0.739 Sum_probs=34.4
Q ss_pred CcccccccccccCCCceEEeC-cCCccchHHHHHHHhcCCCCcc--cccc
Q 020491 266 DAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPL--CKYN 312 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPl--CR~~ 312 (325)
...|.+|-+.|.+++.+..-| |+-.+|.+|-++ ...|-. |..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 367999999999888888998 999999999554 566654 5443
No 95
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=0.33 Score=49.92 Aligned_cols=51 Identities=33% Similarity=0.865 Sum_probs=41.7
Q ss_pred cCCCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491 261 VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 318 (325)
Q Consensus 261 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 318 (325)
.+.+....|.||+.+. ..+..+|. |..|..+|+..+..||+|...+..+..
T Consensus 474 ~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 3445567899999997 55778899 999999999999999999887765443
No 96
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.65 E-value=0.34 Score=51.62 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=28.5
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHH
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 300 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL 300 (325)
+.++.|.+|...+... .-..-||+|.||.+|+.+=.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 4457899998887665 55678999999999996643
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.54 E-value=0.46 Score=45.41 Aligned_cols=52 Identities=23% Similarity=0.561 Sum_probs=35.9
Q ss_pred CCCcccccccccccCCC-ceEEeCcCCccchHHHHHHH-hcCCCCccccccccC
Q 020491 264 NEDAECCICLSAYDDGV-ELRELPCGHHFHCACVDKWL-YINATCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CI~~WL-~~~~tCPlCR~~I~~ 315 (325)
.|++-|+.|+++++-.| ...-.||+-..+.-|-..-- ..|..||-||....+
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 34566999999998666 34556788666666643322 247899999987654
No 98
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.54 E-value=0.32 Score=44.72 Aligned_cols=54 Identities=22% Similarity=0.608 Sum_probs=37.9
Q ss_pred CCcccccccccccCCCce-EEeCcC-----CccchHHHHHHHhcCC--------CCccccccccCCCC
Q 020491 265 EDAECCICLSAYDDGVEL-RELPCG-----HHFHCACVDKWLYINA--------TCPLCKYNILKSSS 318 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~l-r~LPC~-----H~FH~~CI~~WL~~~~--------tCPlCR~~I~~~~~ 318 (325)
.+..|=||+..=+|+..- =.-||. |.-|..|+..|...+. +||-|+.+....-+
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P 86 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFP 86 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecc
Confidence 457899999884444211 134653 9999999999996542 59999988765433
No 99
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.38 E-value=0.43 Score=49.96 Aligned_cols=26 Identities=31% Similarity=0.708 Sum_probs=23.0
Q ss_pred EEeCcCCccchHHHHHHHhcCCCCcc
Q 020491 283 RELPCGHHFHCACVDKWLYINATCPL 308 (325)
Q Consensus 283 r~LPC~H~FH~~CI~~WL~~~~tCPl 308 (325)
....|+|..|..|..+|+++...||-
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 34568999999999999999999984
No 100
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=86.28 E-value=0.32 Score=51.25 Aligned_cols=47 Identities=32% Similarity=0.650 Sum_probs=37.8
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhc--CCCCccccccccCCC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNILKSS 317 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~--~~tCPlCR~~I~~~~ 317 (325)
..|.||++ .+.....+|+|.|+.+|+.+=+.. ++.||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 455578899999999999887753 456999998876543
No 101
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.61 E-value=0.42 Score=50.67 Aligned_cols=42 Identities=26% Similarity=0.720 Sum_probs=32.7
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccc
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 313 (325)
..|..|--..+-+. .---|+|.||..|+. .....||-|+-+.
T Consensus 841 skCs~C~~~LdlP~--VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLPF--VHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccce--eeeecccHHHHHhhc---cCcccCCccchhh
Confidence 58999987765552 344599999999998 5567899998844
No 102
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=84.26 E-value=1.9 Score=42.01 Aligned_cols=28 Identities=25% Similarity=0.821 Sum_probs=21.4
Q ss_pred cCCccchHHHHHHHhc-------------CCCCcccccccc
Q 020491 287 CGHHFHCACVDKWLYI-------------NATCPLCKYNIL 314 (325)
Q Consensus 287 C~H~FH~~CI~~WL~~-------------~~tCPlCR~~I~ 314 (325)
|.-..+.+|+.+|+-. +.+||.||+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4567889999998853 347999998754
No 103
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=82.79 E-value=0.33 Score=50.60 Aligned_cols=47 Identities=36% Similarity=0.675 Sum_probs=39.3
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhc---CCCCccccccccCC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILKS 316 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~---~~tCPlCR~~I~~~ 316 (325)
.+|+||+..|.++ ..+.|.|.|...|+..=|.. ...||+|+..+.+.
T Consensus 22 lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred ccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 6899999999988 56789999999999876654 35799999887654
No 104
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=81.77 E-value=0.5 Score=52.28 Aligned_cols=47 Identities=34% Similarity=0.758 Sum_probs=39.1
Q ss_pred CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
...|.||++...+.. ....|+|.+++.|...|+..+..||.|+....
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhhhh
Confidence 458999999988432 34569999999999999999999999986443
No 105
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=80.61 E-value=7.9 Score=31.35 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=18.1
Q ss_pred HHHhcCCCCccccccccCCCCcccc
Q 020491 298 KWLYINATCPLCKYNILKSSSNQDR 322 (325)
Q Consensus 298 ~WL~~~~tCPlCR~~I~~~~~~~~~ 322 (325)
+-+.+...|+.|++++.-+.+.+.+
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~legk 104 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPSLEGK 104 (114)
T ss_pred hhhchhhccCcCCCcCccCchhhcc
Confidence 3455667899999999877665543
No 106
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=79.78 E-value=1.2 Score=42.44 Aligned_cols=44 Identities=20% Similarity=0.604 Sum_probs=34.4
Q ss_pred CCcccccccccccCCCceEEeCcC--CccchHHHHHHHhcCCCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELRELPCG--HHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~--H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
+-.+|+||.+.+..+ ...|+ |.-+..|-. +....||.||.++..
T Consensus 47 ~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 347999999998877 35575 888888854 567889999999974
No 107
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.89 E-value=0.79 Score=41.86 Aligned_cols=51 Identities=33% Similarity=0.612 Sum_probs=38.0
Q ss_pred CCccccccccc-ccCCC-ceEEeC-cCCccchHHHHHHHhcC-CCCc--cccccccC
Q 020491 265 EDAECCICLSA-YDDGV-ELRELP-CGHHFHCACVDKWLYIN-ATCP--LCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~-y~~~~-~lr~LP-C~H~FH~~CI~~WL~~~-~tCP--lCR~~I~~ 315 (325)
+|..|++|-.+ |-+++ ++-.-| |-|-.+..|+|.-+... +.|| -|-+.+.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 45689999866 44555 444447 99999999999999765 7899 78665543
No 108
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.53 E-value=1.6 Score=46.13 Aligned_cols=50 Identities=10% Similarity=0.053 Sum_probs=36.8
Q ss_pred CCcccccccccccC-CCceEEeC---cCCccchHHHHHHHhc------CCCCcccccccc
Q 020491 265 EDAECCICLSAYDD-GVELRELP---CGHHFHCACVDKWLYI------NATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~-~~~lr~LP---C~H~FH~~CI~~WL~~------~~tCPlCR~~I~ 314 (325)
+...|.+|.-++.+ .|..-.+| |.|.|+-.||.+|..+ +-.||+|+..|.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 44566666666665 33455667 9999999999999863 456999988775
No 109
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=77.67 E-value=1.3 Score=41.22 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=35.8
Q ss_pred cccccccccccCCCceEEe---C-cCCccchHHHHHHHh---------cCCCCccccccc
Q 020491 267 AECCICLSAYDDGVELREL---P-CGHHFHCACVDKWLY---------INATCPLCKYNI 313 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L---P-C~H~FH~~CI~~WL~---------~~~tCPlCR~~I 313 (325)
.+|-+|.+++.+.+..+.+ | |+-++|..|+..-+. ..+.||.|+.-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 6899999999666655544 2 888999999998443 246899998744
No 110
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=73.11 E-value=1.2 Score=45.99 Aligned_cols=41 Identities=24% Similarity=0.561 Sum_probs=26.1
Q ss_pred Cccccccc-----ccccCCCceEEeCcCCccchHHHHHHHhcCCCCccc
Q 020491 266 DAECCICL-----SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 309 (325)
Q Consensus 266 d~~C~ICL-----~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlC 309 (325)
...|-+|- -.|+.....+...|+++||.+|.. ..+..||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~---r~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLR---RKSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHh---ccCCCCCch
Confidence 35677772 123333334455699999999943 345559999
No 111
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=70.98 E-value=2.1 Score=42.36 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=30.9
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI 302 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~ 302 (325)
|+-.|+||..=|+++ ..|||+|..+..|-..=+..
T Consensus 3 eelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 456899999999998 89999999999999887754
No 112
>PRK02935 hypothetical protein; Provisional
Probab=69.74 E-value=18 Score=29.02 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=16.9
Q ss_pred HHHhcCCCCccccccccCCCCcccc
Q 020491 298 KWLYINATCPLCKYNILKSSSNQDR 322 (325)
Q Consensus 298 ~WL~~~~tCPlCR~~I~~~~~~~~~ 322 (325)
+-|.+-..|..|+.++.-+.+.+++
T Consensus 81 KmLGrvD~CM~C~~PLTLd~~legk 105 (110)
T PRK02935 81 KMLGRVDACMHCNQPLTLDRSLEGK 105 (110)
T ss_pred hhccceeecCcCCCcCCcCcccccc
Confidence 3345556799999998766555543
No 113
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.41 E-value=4.5 Score=39.61 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=37.4
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcC---CCCcccccc
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN---ATCPLCKYN 312 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~---~tCPlCR~~ 312 (325)
-.|+|=-+.=.+++....|+|||+--++-+++--+.. -.||.|=.+
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 5799988877788889999999999999999966543 359999443
No 114
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.04 E-value=3.6 Score=38.71 Aligned_cols=29 Identities=24% Similarity=0.605 Sum_probs=22.2
Q ss_pred cCCccchHHHHHHHh-------------cCCCCccccccccC
Q 020491 287 CGHHFHCACVDKWLY-------------INATCPLCKYNILK 315 (325)
Q Consensus 287 C~H~FH~~CI~~WL~-------------~~~tCPlCR~~I~~ 315 (325)
|.-..+.+|+.+|+- .+.+||.||++..-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 446788999988763 46789999998653
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=64.34 E-value=5.2 Score=42.25 Aligned_cols=41 Identities=22% Similarity=0.487 Sum_probs=30.0
Q ss_pred CcccccccccccCCCceEEeC-cCCccchHHHHHHHhcCCCCcc
Q 020491 266 DAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPL 308 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPl 308 (325)
.+.|+.|-.....- ...-+ |+|.-|.+|+.+|+..+.-||.
T Consensus 779 ~~~CtVC~~vi~G~--~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGV--DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeeee--EeecccccccccHHHHHHHHhcCCCCcc
Confidence 35788885443221 12233 9999999999999999988887
No 116
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=63.20 E-value=6.4 Score=32.88 Aligned_cols=52 Identities=31% Similarity=0.559 Sum_probs=34.6
Q ss_pred cccccccccccCCCceEEeC-cCCccchHHHHHHHh---cCCCCccccccccCCCC
Q 020491 267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY---INATCPLCKYNILKSSS 318 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~---~~~tCPlCR~~I~~~~~ 318 (325)
.+|.||-+.-.+..-+.-=. ||-.-+..|--.-.+ ..+.||.||.....++.
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence 68999998866553221111 777777777655444 46889999998865543
No 117
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.82 E-value=4.2 Score=40.80 Aligned_cols=38 Identities=37% Similarity=0.796 Sum_probs=32.1
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN 303 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~ 303 (325)
..+.+|-||.+.+.. .+..++|+|.|...|...-+.++
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 345799999999887 66778899999999999988753
No 118
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14169 YdjO: Cold-inducible protein YdjO
Probab=62.08 E-value=3.9 Score=29.28 Aligned_cols=19 Identities=37% Similarity=0.996 Sum_probs=14.3
Q ss_pred HHhcC------CCCccccccccCCC
Q 020491 299 WLYIN------ATCPLCKYNILKSS 317 (325)
Q Consensus 299 WL~~~------~tCPlCR~~I~~~~ 317 (325)
|.+.| ..||+|+++..++.
T Consensus 29 WmR~nFs~~~~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 29 WMRDNFSFEEEPVCPLCKSPMVSGT 53 (59)
T ss_pred ccccccccCCCccCCCcCCccccce
Confidence 66654 67999999987654
No 120
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=61.73 E-value=7.9 Score=26.59 Aligned_cols=42 Identities=24% Similarity=0.566 Sum_probs=19.7
Q ss_pred ccccccccccCCCceEEeCcCCccchHHHHHHHhcCC-----CCcccccc
Q 020491 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-----TCPLCKYN 312 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~-----tCPlCR~~ 312 (325)
.|+|....++. .+|--.|.|.- .-=++.|++.+. .||+|+++
T Consensus 4 ~CPls~~~i~~--P~Rg~~C~H~~-CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKNCKHLQ-CFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCcCcccc-eECHHHHHHHhhccCCeECcCCcCc
Confidence 57777777654 35667798862 112345665432 59999864
No 121
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=60.76 E-value=5.7 Score=35.54 Aligned_cols=40 Identities=33% Similarity=0.682 Sum_probs=27.2
Q ss_pred Cccccccccc-----ccCCCceEEeC-cCCccchHHHHHHHhcCCCCccccc
Q 020491 266 DAECCICLSA-----YDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKY 311 (325)
Q Consensus 266 d~~C~ICL~~-----y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~ 311 (325)
+..|-+|-++ |+. +.+..-+ |+-+||.+|..+ ..||-|..
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 3578888653 333 3444555 999999999662 67999943
No 122
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=59.41 E-value=8.8 Score=26.68 Aligned_cols=41 Identities=32% Similarity=0.790 Sum_probs=20.8
Q ss_pred cccccccccCCC------ceEEeC-cCCccchHHHHHHHh-cCCCCcccc
Q 020491 269 CCICLSAYDDGV------ELRELP-CGHHFHCACVDKWLY-INATCPLCK 310 (325)
Q Consensus 269 C~ICL~~y~~~~------~lr~LP-C~H~FH~~CI~~WL~-~~~tCPlCR 310 (325)
|--|+..|.++. ..-+-| |+++|..+| |.... .=.+||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 445666666542 334556 999999999 55443 336799884
No 123
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=59.33 E-value=4.7 Score=36.27 Aligned_cols=42 Identities=26% Similarity=0.703 Sum_probs=34.3
Q ss_pred CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccc
Q 020491 266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 309 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlC 309 (325)
-..|.+|-+-.-.+ +|.-.|+--+|..|+.+.+.....||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCch
Confidence 36899998764444 3445688899999999999999999999
No 124
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.97 E-value=4.1 Score=43.19 Aligned_cols=43 Identities=26% Similarity=0.553 Sum_probs=32.8
Q ss_pred CcccccccccccC-C---CceEEeCcCCccchHHHHHHHhcCCCCccc
Q 020491 266 DAECCICLSAYDD-G---VELRELPCGHHFHCACVDKWLYINATCPLC 309 (325)
Q Consensus 266 d~~C~ICL~~y~~-~---~~lr~LPC~H~FH~~CI~~WL~~~~tCPlC 309 (325)
+..|+-|.+.... + +.+..+-|+|.||+.|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 3479999887552 2 4678889999999999988776666 6555
No 125
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.48 E-value=4.2 Score=40.11 Aligned_cols=37 Identities=30% Similarity=0.674 Sum_probs=27.8
Q ss_pred CcccccccccccCC-CceEEeCcCCccchHHHHHHHhc
Q 020491 266 DAECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYI 302 (325)
Q Consensus 266 d~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CI~~WL~~ 302 (325)
..+|.||..++... +....+.|+|.|+.+|+.+-+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 46899999555444 33445669999999999988874
No 126
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=53.87 E-value=27 Score=32.83 Aligned_cols=104 Identities=18% Similarity=0.269 Sum_probs=57.7
Q ss_pred hccCccccchhhHHHHHHH-------HHHHHhheeeeeec-cCCCCCCchhhHHHHHhhhHHHHHhhhheeeeecccccc
Q 020491 19 RQSDWAYSKPVVVLDIIWN-------LAFVAVAFSVMVLS-QNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRV 90 (325)
Q Consensus 19 ~~~~~~~s~~~v~~~~~~~-------l~qiv~~i~vL~ls-~~E~p~~PL~~Wi~gY~~~c~~~~~~~~~~~~~r~~~~~ 90 (325)
|--||--+-|++++.+-|. ++.++++..+...+ .---...-..-|. =|++++++++..++.-+..-.....
T Consensus 105 RYIdWllttPllll~l~lla~~~~~ti~~~v~ad~~~iv~~laaa~~~~tykW~-~y~ig~~a~lvvl~~l~~~~~~~a~ 183 (285)
T COG5524 105 RYIDWLLTTPLLLLYLGLLAGTSLWTIAGVVAADIIMIVTGLAAALTHSTYKWA-YYAIGAAAFLVVLAVLVTGFFAKAK 183 (285)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhhchhhhHH-HHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 6778889999999988654 33333332221111 0000111112343 4899999988776555432111000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcceeccccccccchhhHHHHHHHHHHHHHHHheeeeeEEEEcCC
Q 020491 91 SAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGG 155 (325)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~i~G~~w~~~~~ 155 (325)
+ +.+.+..-+.++.+++.+.|+++-.+|..+++
T Consensus 184 ~--------------------------------~~~~v~~~F~~l~~~~vvLWl~YPivW~ig~~ 216 (285)
T COG5524 184 T--------------------------------RGTEVRSLFLTLRNYTVVLWLGYPIVWLIGPG 216 (285)
T ss_pred c--------------------------------cchHHHHHHHHHHHHHHHHHHhccceeEEccc
Confidence 0 00233334666777899999999999998433
No 127
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=52.18 E-value=12 Score=35.31 Aligned_cols=43 Identities=30% Similarity=0.590 Sum_probs=32.0
Q ss_pred cccCCC-ceEEeCcCCccchHHHHHHHhcC-CCCccccccccCCC
Q 020491 275 AYDDGV-ELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKSS 317 (325)
Q Consensus 275 ~y~~~~-~lr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~~ 317 (325)
.|-+++ .+..=||+|-.+.+|+|.-+..+ +.||-|-..+.++.
T Consensus 10 ~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 10 RYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred eecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 455555 23333799999999999999765 68999988776654
No 128
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=48.07 E-value=7.1 Score=26.32 Aligned_cols=41 Identities=29% Similarity=0.685 Sum_probs=26.1
Q ss_pred cccccccccCCCceEEe-CcCCccchHHHHHHHh------cCCCCcccc
Q 020491 269 CCICLSAYDDGVELREL-PCGHHFHCACVDKWLY------INATCPLCK 310 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~------~~~tCPlCR 310 (325)
|.||-..-.++ .+..- .|+..||..|++.=.+ ..-.||.|+
T Consensus 2 C~vC~~~~~~~-~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDG-DMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTS-SEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCC-CeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 78888843333 33333 4889999999865433 123588775
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=46.81 E-value=17 Score=34.91 Aligned_cols=52 Identities=23% Similarity=0.464 Sum_probs=37.9
Q ss_pred cccccccccccCCCceEEeC--cCCccchHHHHHHHhcCCCCccccccccCCCCc
Q 020491 267 AECCICLSAYDDGVELRELP--CGHHFHCACVDKWLYINATCPLCKYNILKSSSN 319 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP--C~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~~ 319 (325)
..|+||-+.....+ .-.+| |+|.-|..|...=...+.+||.||++...+...
T Consensus 250 ~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~ 303 (327)
T KOG2068|consen 250 PSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKK 303 (327)
T ss_pred CCCCCCCCcccccc-cccccccccccchhhhhhcccccCCCCCccCCccccCccc
Confidence 68999998864333 23455 677777778777777789999999888765544
No 130
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.86 E-value=12 Score=36.96 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=34.2
Q ss_pred CCcccccccccccCCCceEEe--CcCCccchHHHHHHHhcCCCCccc
Q 020491 265 EDAECCICLSAYDDGVELREL--PCGHHFHCACVDKWLYINATCPLC 309 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CI~~WL~~~~tCPlC 309 (325)
....|++|--.++..+....+ .|+|.|+-.|...|...+..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 346799988877665533333 388999999999999988888666
No 131
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=41.94 E-value=37 Score=22.91 Aligned_cols=13 Identities=38% Similarity=1.032 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhhh
Q 020491 180 VVFCVALACIIGI 192 (325)
Q Consensus 180 vv~~val~~li~i 192 (325)
+-||.+++|++.|
T Consensus 33 vnf~lilicllli 45 (52)
T TIGR01294 33 INFCLILICLLLI 45 (52)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555544
No 132
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.87 E-value=14 Score=33.79 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=26.6
Q ss_pred ccccccccccCCCceEEeCcCCccchHHHHHHHh-cCCCC
Q 020491 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATC 306 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-~~~tC 306 (325)
.|.-|... .++++...+.|.|+|+..|...=.. .-..|
T Consensus 5 hCn~C~~~-~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lC 43 (233)
T KOG4739|consen 5 HCNKCFRF-PSQDPFFLTACRHVFCEPCLKASSPDVCPLC 43 (233)
T ss_pred Eecccccc-CCCCceeeeechhhhhhhhcccCCccccccc
Confidence 46656444 3388899999999999999865544 33444
No 133
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=41.37 E-value=13 Score=23.76 Aligned_cols=26 Identities=35% Similarity=0.674 Sum_probs=16.5
Q ss_pred cccccccccccCCCc--------eEEeCcCCccc
Q 020491 267 AECCICLSAYDDGVE--------LRELPCGHHFH 292 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~--------lr~LPC~H~FH 292 (325)
.+|+=|-..|+-+|+ ++--.|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 368888888885543 33333777774
No 134
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=40.78 E-value=13 Score=22.00 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=9.3
Q ss_pred cccccccccCCCceEEeC-cCCcc
Q 020491 269 CCICLSAYDDGVELRELP-CGHHF 291 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~LP-C~H~F 291 (325)
|+-|-...... .+.-| |+|.|
T Consensus 3 CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhh--cCcCCCCCCCC
Confidence 55554443222 23344 55555
No 135
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=40.29 E-value=8 Score=26.79 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=6.4
Q ss_pred CCCccccccccC
Q 020491 304 ATCPLCKYNILK 315 (325)
Q Consensus 304 ~tCPlCR~~I~~ 315 (325)
+.||+|..++..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 489999998864
No 136
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=39.80 E-value=34 Score=23.05 Aligned_cols=14 Identities=50% Similarity=1.132 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhh
Q 020491 179 FVVFCVALACIIGI 192 (325)
Q Consensus 179 fvv~~val~~li~i 192 (325)
|+-||.+++|++.|
T Consensus 32 fvnfclilicllli 45 (52)
T PF04272_consen 32 FVNFCLILICLLLI 45 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 137
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=39.71 E-value=17 Score=23.26 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=15.9
Q ss_pred cccccccccccCCCc--------eEEeCcCCccc
Q 020491 267 AECCICLSAYDDGVE--------LRELPCGHHFH 292 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~--------lr~LPC~H~FH 292 (325)
..|+=|-..|+-+++ ++--.|+|.|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 368888888875442 22223777775
No 138
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=39.68 E-value=20 Score=25.74 Aligned_cols=14 Identities=36% Similarity=0.845 Sum_probs=10.5
Q ss_pred CCCCccccccccCC
Q 020491 303 NATCPLCKYNILKS 316 (325)
Q Consensus 303 ~~tCPlCR~~I~~~ 316 (325)
+..||+||..+.-+
T Consensus 2 k~~CPlCkt~~n~g 15 (61)
T PF05715_consen 2 KSLCPLCKTTLNVG 15 (61)
T ss_pred CccCCcccchhhcC
Confidence 56799999887443
No 139
>PRK05978 hypothetical protein; Provisional
Probab=38.93 E-value=18 Score=30.83 Aligned_cols=29 Identities=24% Similarity=0.595 Sum_probs=22.6
Q ss_pred eC-cC--CccchHHHHHHHhcCCCCccccccccCCCC
Q 020491 285 LP-CG--HHFHCACVDKWLYINATCPLCKYNILKSSS 318 (325)
Q Consensus 285 LP-C~--H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 318 (325)
.| |+ |.|+ .+|+.+.+||.|-.++.....
T Consensus 36 CP~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 36 CPACGEGKLFR-----AFLKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred CCCCCCCcccc-----cccccCCCccccCCccccCCc
Confidence 34 65 8886 699999999999888765433
No 140
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=38.91 E-value=20 Score=21.61 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=10.7
Q ss_pred ccccccccccCCCceEEeCcCCccchHHH
Q 020491 268 ECCICLSAYDDGVELRELPCGHHFHCACV 296 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI 296 (325)
.|.+|-.....+...+-..|+-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47778777665344555569999999985
No 141
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=37.76 E-value=29 Score=33.26 Aligned_cols=50 Identities=32% Similarity=0.647 Sum_probs=34.5
Q ss_pred Cccccccccccc--------------C-CC-ceEEeCcCCccchHHHHHHHhc---------CCCCccccccccC
Q 020491 266 DAECCICLSAYD--------------D-GV-ELRELPCGHHFHCACVDKWLYI---------NATCPLCKYNILK 315 (325)
Q Consensus 266 d~~C~ICL~~y~--------------~-~~-~lr~LPC~H~FH~~CI~~WL~~---------~~tCPlCR~~I~~ 315 (325)
+.+|++|+..=. | +- .-.--||+|+--.+-+.=|-++ ++.||.|-..+..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 578999996521 1 11 1123589999888899999875 3579999876643
No 142
>COG3671 Predicted membrane protein [Function unknown]
Probab=36.20 E-value=80 Score=25.92 Aligned_cols=48 Identities=10% Similarity=0.397 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHhhh
Q 020491 164 LLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQ 211 (325)
Q Consensus 164 ~ly~l~ivfL~f~v~fvv~~val~~li~i~lCcclp~ii~~l~~~~~~ 211 (325)
+.||+++.+-..++++..+.+.+..++...+--...+++.+.|...++
T Consensus 68 RTFw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~Riv~G~~yl~~g~ 115 (125)
T COG3671 68 RTFWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYRIVIGFKYLNEGK 115 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356777777666666665555554444444444455555555555443
No 143
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=33.98 E-value=8.3 Score=36.52 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=31.3
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA 304 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~ 304 (325)
.+|.+|+++|+.+.....+-|.-.||..|+-.|++..+
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 38999999998766666666666999999999998653
No 144
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=32.21 E-value=44 Score=36.21 Aligned_cols=28 Identities=21% Similarity=0.870 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 020491 166 YWLCIIFLGFDVFFVVFCVALACIIGIAVCCC 197 (325)
Q Consensus 166 y~l~ivfL~f~v~fvv~~val~~li~i~lCcc 197 (325)
||..+++.+++++ |++++| ++++..|||
T Consensus 90 ~~g~~v~~~i~ll---~~il~P-~vg~~fCcC 117 (806)
T PF05478_consen 90 EWGFLVCAVIGLL---FIILMP-LVGLCFCCC 117 (806)
T ss_pred HHHHHHHHHHHHH---HHHHHH-HHHHHHhcc
Confidence 3444455554443 333344 445566766
No 145
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=32.19 E-value=37 Score=32.57 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=33.0
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcC---CCCcccc
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN---ATCPLCK 310 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~---~tCPlCR 310 (325)
-.|++=-+.-.+......|.|+|+--++-++.--+.. -.||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 4677766666667778899999999999999854432 3599993
No 146
>PRK11827 hypothetical protein; Provisional
Probab=30.67 E-value=19 Score=25.85 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=14.6
Q ss_pred HHHHhcCCCCccccccccCC
Q 020491 297 DKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 297 ~~WL~~~~tCPlCR~~I~~~ 316 (325)
++||..--.||.||.++...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 46676677799998887653
No 147
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=29.09 E-value=33 Score=25.12 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=8.4
Q ss_pred cchHHHHHHHh
Q 020491 291 FHCACVDKWLY 301 (325)
Q Consensus 291 FH~~CI~~WL~ 301 (325)
|+..|+.+|.+
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 148
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=28.73 E-value=46 Score=26.19 Aligned_cols=31 Identities=29% Similarity=0.681 Sum_probs=22.0
Q ss_pred CcccccccccccCCCceEEeC--cCCccchHHHHH
Q 020491 266 DAECCICLSAYDDGVELRELP--CGHHFHCACVDK 298 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LP--C~H~FH~~CI~~ 298 (325)
...|.||-.. .|..+.--- |+..||..|..+
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 3689999887 443333332 778999999866
No 149
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=28.34 E-value=1.5e+02 Score=22.21 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=11.5
Q ss_pred hcCCCCHHHHhhcccc
Q 020491 211 QQEGASKEDIERLSKF 226 (325)
Q Consensus 211 ~~~~~s~~~i~~Lp~~ 226 (325)
..+|+++++.+.|...
T Consensus 32 ~~~gLs~~d~~~L~~L 47 (75)
T PF06667_consen 32 SSQGLSEEDEQRLQEL 47 (75)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3588999887776543
No 150
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=28.28 E-value=48 Score=30.32 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=14.0
Q ss_pred hcCCCCccccccccCCCCccc
Q 020491 301 YINATCPLCKYNILKSSSNQD 321 (325)
Q Consensus 301 ~~~~tCPlCR~~I~~~~~~~~ 321 (325)
+.-.+||+||..-...++...
T Consensus 261 RNAPiCPlCKaKsRSrNPKKp 281 (286)
T KOG4451|consen 261 RNAPICPLCKAKSRSRNPKKP 281 (286)
T ss_pred cCCCCCcchhhccccCCCCCc
Confidence 445789999987665544443
No 151
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=27.90 E-value=39 Score=20.25 Aligned_cols=17 Identities=47% Similarity=0.550 Sum_probs=13.2
Q ss_pred CCcchhhhHhHHHHHHh
Q 020491 2 REPSMMVRETAAEQLEE 18 (325)
Q Consensus 2 ~~~~~~~r~~~~~~~~~ 18 (325)
..|+-.||++|++-+-+
T Consensus 10 ~D~~~~VR~~a~~~l~~ 26 (31)
T PF02985_consen 10 NDPSPEVRQAAAECLGA 26 (31)
T ss_dssp T-SSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57889999999987754
No 152
>PRK10633 hypothetical protein; Provisional
Probab=27.56 E-value=1.7e+02 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHheeeeeE
Q 020491 131 HLESANTMFSFIWWIIGFY 149 (325)
Q Consensus 131 ~~~~~~~~f~~~W~i~G~~ 149 (325)
+....++++.++||.++-|
T Consensus 13 ~~al~L~l~y~~~W~~~aY 31 (80)
T PRK10633 13 RWALGLTLLYLAAWLVAAY 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566788888888888766
No 153
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.55 E-value=83 Score=30.65 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=18.5
Q ss_pred CchhhHHHHHhhhHHHHHhhhheeeeeccc
Q 020491 58 MPLRLWIVGYAIQCVLHMVCVCVEYKRRSR 87 (325)
Q Consensus 58 ~PL~~Wi~gY~~~c~~~~~~~~~~~~~r~~ 87 (325)
+|+..|++|..+ .++++.++++..|.++-
T Consensus 186 ~~~~~~vl~~~f-vl~tlaivLFPLWP~~m 214 (372)
T KOG2927|consen 186 RPLMWQVLGVLF-VLVTLAIVLFPLWPRRM 214 (372)
T ss_pred CchhHHHHHHHH-HHHHHHHHhcccCcHHH
Confidence 567777777666 56666666666655443
No 154
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.39 E-value=67 Score=26.08 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=30.3
Q ss_pred cccccccccccCCC----------ceEEeC-cCCccchHHHHHHHhcCCCCccccc
Q 020491 267 AECCICLSAYDDGV----------ELRELP-CGHHFHCACVDKWLYINATCPLCKY 311 (325)
Q Consensus 267 ~~C~ICL~~y~~~~----------~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~ 311 (325)
..|--|+..|.+.. ..-+-+ |+++|+.+|=.-+-..=.+||-|..
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 45888888876431 112344 8999999995555555678999963
No 155
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.18 E-value=46 Score=30.85 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=27.8
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHh
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLY 301 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~ 301 (325)
+.|+.||..+.++ ...|=+|+|..+||-+.+.
T Consensus 44 dcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 5799999999998 6778889999999988763
No 156
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=25.88 E-value=32 Score=25.74 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=16.8
Q ss_pred cccchhhHHHHHHHHHHHHhheeeee
Q 020491 24 AYSKPVVVLDIIWNLAFVAVAFSVMV 49 (325)
Q Consensus 24 ~~s~~~v~~~~~~~l~qiv~~i~vL~ 49 (325)
-|++||+ +|-++||++.+.||.
T Consensus 32 Vy~~Pem----A~~laeiiav~lVl~ 53 (80)
T PRK13727 32 VYSKPWM----AFFLAELIAAILVLF 53 (80)
T ss_pred HHcChHH----HHHHHHHHHHHHHhh
Confidence 4888874 577889988877764
No 157
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=25.66 E-value=50 Score=20.40 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=6.5
Q ss_pred CCCCccccc
Q 020491 303 NATCPLCKY 311 (325)
Q Consensus 303 ~~tCPlCR~ 311 (325)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 447999865
No 158
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.30 E-value=1.4e+02 Score=32.11 Aligned_cols=47 Identities=28% Similarity=0.565 Sum_probs=29.0
Q ss_pred CCCccccccccccc----CCCc-----eEEeC-cCCccchHHHHHHHhcCCCCcccccccc
Q 020491 264 NEDAECCICLSAYD----DGVE-----LRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 264 ~ed~~C~ICL~~y~----~~~~-----lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
+.+..|+-|-.+|- .|.. .=..| |.|--|..=|.+ ...||+|.+.+.
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 44567777766654 1221 22345 889888755443 578999987654
No 159
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=25.08 E-value=31 Score=25.72 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.5
Q ss_pred cccchhhHHHHHHHHHHHHhheeeee
Q 020491 24 AYSKPVVVLDIIWNLAFVAVAFSVMV 49 (325)
Q Consensus 24 ~~s~~~v~~~~~~~l~qiv~~i~vL~ 49 (325)
-|+|||+ +|-++++++.+.||.
T Consensus 32 Vy~~P~m----A~~laeliav~lVl~ 53 (80)
T TIGR02741 32 VYRKPWM----AFFLAELIAVILVLW 53 (80)
T ss_pred HHcChHH----HHHHHHHHHHHHHHh
Confidence 4888875 577888888877764
No 160
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=24.84 E-value=52 Score=19.96 Aligned_cols=36 Identities=22% Similarity=0.526 Sum_probs=22.9
Q ss_pred cccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccc
Q 020491 269 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313 (325)
Q Consensus 269 C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 313 (325)
|..|-..+.+++..... =+..||.+|. .|..|+..+
T Consensus 2 C~~C~~~i~~~~~~~~~-~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRA-LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEe-CCccccccCC--------CCcccCCcC
Confidence 67777777666333222 3678998773 577777655
No 161
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=23.64 E-value=32 Score=20.67 Aligned_cols=13 Identities=31% Similarity=1.035 Sum_probs=6.9
Q ss_pred CCccccccccCCC
Q 020491 305 TCPLCKYNILKSS 317 (325)
Q Consensus 305 tCPlCR~~I~~~~ 317 (325)
+||.|.+.+.+..
T Consensus 1 ~CP~C~s~l~~~~ 13 (28)
T PF03119_consen 1 TCPVCGSKLVREE 13 (28)
T ss_dssp B-TTT--BEEE-C
T ss_pred CcCCCCCEeEcCC
Confidence 4999999987543
No 162
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=23.13 E-value=8.6 Score=28.53 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=18.3
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
..|+.|-.+++-.. +|.++..|-.. ++..+.||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 46888877655433 33333444332 455677888877663
No 163
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=23.09 E-value=41 Score=27.99 Aligned_cols=22 Identities=36% Similarity=0.877 Sum_probs=16.8
Q ss_pred CcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 286 PCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 286 PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
-|+|+||.+ .-||.|+..|-..
T Consensus 102 ~C~~~Y~Ge---------K~C~~C~tGiYS~ 123 (128)
T PF11682_consen 102 MCGNHYHGE---------KYCPKCGTGIYSI 123 (128)
T ss_pred cCCCccCcC---------EecCCCCCcccce
Confidence 488888874 5799999888643
No 164
>PLN02189 cellulose synthase
Probab=22.75 E-value=1e+02 Score=34.30 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=35.3
Q ss_pred CCccccccccccc---CCCceEEeC-cCCccchHHHHHHHh-cCCCCcccccccc
Q 020491 265 EDAECCICLSAYD---DGVELRELP-CGHHFHCACVDKWLY-INATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~---~~~~lr~LP-C~H~FH~~CI~~WL~-~~~tCPlCR~~I~ 314 (325)
....|.||-++.. +|+.-.... |+---|..|.+-=-+ -++.||-||....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999875 455444444 666789999843222 3688999998876
No 165
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=14 Score=34.70 Aligned_cols=48 Identities=27% Similarity=0.610 Sum_probs=38.0
Q ss_pred CCcccccccccccCCC---ceEEeC--------cCCccchHHHHHHHhc-CCCCcccccc
Q 020491 265 EDAECCICLSAYDDGV---ELRELP--------CGHHFHCACVDKWLYI-NATCPLCKYN 312 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~---~lr~LP--------C~H~FH~~CI~~WL~~-~~tCPlCR~~ 312 (325)
.+..|.||...|+.++ .-+.+. |+|.-..+|++.=+.. +..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 4478999999999432 345566 9999999999998764 4689999874
No 166
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=22.14 E-value=30 Score=34.17 Aligned_cols=49 Identities=27% Similarity=0.533 Sum_probs=0.0
Q ss_pred Cccccccccccc--------------CCC--ceEEeCcCCccchHHHHHHHhc---------CCCCcccccccc
Q 020491 266 DAECCICLSAYD--------------DGV--ELRELPCGHHFHCACVDKWLYI---------NATCPLCKYNIL 314 (325)
Q Consensus 266 d~~C~ICL~~y~--------------~~~--~lr~LPC~H~FH~~CI~~WL~~---------~~tCPlCR~~I~ 314 (325)
+.+|++|+..-. |.. ...--||+|+--.+...-|-+. ++.||.|-..+.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 579999996532 111 1223589999999999999875 257999988775
No 167
>PF15353 HECA: Headcase protein family homologue
Probab=21.49 E-value=53 Score=26.36 Aligned_cols=15 Identities=40% Similarity=1.037 Sum_probs=12.9
Q ss_pred CcCCccchHHHHHHH
Q 020491 286 PCGHHFHCACVDKWL 300 (325)
Q Consensus 286 PC~H~FH~~CI~~WL 300 (325)
|.++..|.+|.++|=
T Consensus 39 p~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 39 PFGQYMHRECFEKWE 53 (107)
T ss_pred CCCCchHHHHHHHHH
Confidence 456999999999994
No 168
>PHA02898 virion envelope protein; Provisional
Probab=20.63 E-value=1.9e+02 Score=22.52 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=28.5
Q ss_pred eeeeccCCCC-CCchhh-HHHHHhhhHHHHHhhhhe-eeeeccc
Q 020491 47 VMVLSQNERP-NMPLRL-WIVGYAIQCVLHMVCVCV-EYKRRSR 87 (325)
Q Consensus 47 vL~ls~~E~p-~~PL~~-Wi~gY~~~c~~~~~~~~~-~~~~r~~ 87 (325)
..-+||+++| ++++|+ =++.+.+|.++.+.++.. -|+|+..
T Consensus 30 fidfSK~~~~~~~~wRalSii~FIlgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 30 YIELSKSEKPADSALRSISIISFILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred eehhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3467899998 676664 267888999999987544 4444444
No 169
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=20.60 E-value=1.9e+02 Score=20.55 Aligned_cols=47 Identities=21% Similarity=0.563 Sum_probs=31.9
Q ss_pred cccccccccccCCCceEEeCcC--CccchHHHHHHHhcCCCCccccccccCC
Q 020491 267 AECCICLSAYDDGVELRELPCG--HHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~--H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
..|-.|=.++..+.. -..-|+ ..|+.+|.+.-| +..||-|--++...
T Consensus 6 pnCE~C~~dLp~~s~-~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSP-EAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCC-cceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 356667666665541 122255 469999999976 78899998777643
No 170
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=20.20 E-value=61 Score=22.33 Aligned_cols=22 Identities=32% Similarity=0.890 Sum_probs=13.0
Q ss_pred cCCccchHHHHHHHhcCCCCccc
Q 020491 287 CGHHFHCACVDKWLYINATCPLC 309 (325)
Q Consensus 287 C~H~FH~~CI~~WL~~~~tCPlC 309 (325)
|+|.|... |..-...+..||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 66665543 33333557789988
Done!