Query 020491
Match_columns 325
No_of_seqs 264 out of 2403
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 7.1E-18 2.4E-22 131.0 5.9 76 212-315 14-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 6E-18 2E-22 126.4 2.6 53 265-317 22-74 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 4E-16 1.4E-20 109.1 4.0 50 265-314 4-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.2E-15 4E-20 111.8 6.6 55 264-318 12-66 (69)
5 2ep4_A Ring finger protein 24; 99.6 1.2E-15 4E-20 113.4 6.4 56 264-319 13-68 (74)
6 2ect_A Ring finger protein 126 99.6 1.5E-15 5.2E-20 113.9 6.2 56 264-319 13-68 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 4.8E-15 1.7E-19 112.5 4.6 51 265-315 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.5 1.1E-14 3.8E-19 101.6 4.6 50 265-314 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 1.6E-14 5.6E-19 116.0 5.8 56 265-320 24-99 (114)
10 2d8s_A Cellular modulator of i 99.5 3.1E-14 1.1E-18 107.8 5.4 55 262-317 11-72 (80)
11 2ea6_A Ring finger protein 4; 99.5 3.3E-14 1.1E-18 103.6 5.3 52 264-315 13-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.5 3.7E-14 1.3E-18 113.1 4.8 50 265-314 36-100 (106)
13 3ng2_A RNF4, snurf, ring finge 99.5 2.6E-14 9E-19 104.9 3.6 54 264-317 8-65 (71)
14 2xeu_A Ring finger protein 4; 99.4 4.1E-14 1.4E-18 101.5 3.5 52 265-316 2-57 (64)
15 1chc_A Equine herpes virus-1 r 99.4 1.1E-13 3.7E-18 100.9 3.8 50 264-315 3-52 (68)
16 2ecn_A Ring finger protein 141 99.4 1.2E-13 4.1E-18 101.3 3.4 51 264-318 13-63 (70)
17 2d8t_A Dactylidin, ring finger 99.4 1.7E-13 5.9E-18 100.9 4.0 49 264-315 13-61 (71)
18 2djb_A Polycomb group ring fin 99.4 5.7E-13 2E-17 98.3 6.7 54 264-320 13-67 (72)
19 2yur_A Retinoblastoma-binding 99.4 9.6E-13 3.3E-17 97.8 6.3 54 264-320 13-69 (74)
20 2ct2_A Tripartite motif protei 99.3 1.3E-12 4.4E-17 99.7 6.5 53 264-316 13-69 (88)
21 4a0k_B E3 ubiquitin-protein li 99.3 1.3E-13 4.4E-18 111.7 0.2 50 265-314 47-111 (117)
22 2ysl_A Tripartite motif-contai 99.3 1.5E-12 5E-17 96.0 5.9 50 264-316 18-70 (73)
23 2csy_A Zinc finger protein 183 99.3 1.3E-12 4.5E-17 98.5 5.1 48 264-314 13-60 (81)
24 2ecy_A TNF receptor-associated 99.3 2E-12 7E-17 93.7 5.3 50 264-316 13-63 (66)
25 4ayc_A E3 ubiquitin-protein li 99.2 1.9E-12 6.5E-17 107.7 2.8 48 266-316 53-100 (138)
26 2ysj_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 88.6 6.4 43 264-309 18-63 (63)
27 4ap4_A E3 ubiquitin ligase RNF 99.2 3.1E-12 1.1E-16 104.5 3.7 54 264-317 5-62 (133)
28 2ecw_A Tripartite motif-contai 99.2 1.6E-11 5.6E-16 92.6 6.5 50 264-316 17-72 (85)
29 2ct0_A Non-SMC element 1 homol 99.2 1.3E-11 4.3E-16 91.9 5.5 53 264-318 13-67 (74)
30 2ecv_A Tripartite motif-contai 99.2 1.9E-11 6.5E-16 92.2 6.2 50 264-316 17-72 (85)
31 2ecj_A Tripartite motif-contai 99.2 1.4E-11 4.9E-16 86.5 4.3 43 264-309 13-58 (58)
32 3lrq_A E3 ubiquitin-protein li 99.2 5.5E-12 1.9E-16 99.2 2.2 49 265-316 21-71 (100)
33 1t1h_A Gspef-atpub14, armadill 99.2 1.2E-11 4.2E-16 92.4 4.0 50 264-316 6-56 (78)
34 1g25_A CDK-activating kinase a 99.2 1.5E-11 5.2E-16 88.7 4.1 53 265-317 2-57 (65)
35 2egp_A Tripartite motif-contai 99.2 6.2E-12 2.1E-16 94.0 2.1 50 264-316 10-66 (79)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 1.2E-11 4E-16 101.0 3.6 53 264-316 70-126 (133)
37 2y43_A E3 ubiquitin-protein li 99.2 9.5E-12 3.3E-16 97.4 2.6 48 265-315 21-69 (99)
38 2ckl_A Polycomb group ring fin 99.1 2.6E-11 8.9E-16 96.4 3.8 49 265-316 14-63 (108)
39 3ztg_A E3 ubiquitin-protein li 99.1 7.4E-11 2.5E-15 90.8 5.9 48 264-314 11-61 (92)
40 3fl2_A E3 ubiquitin-protein li 99.1 4E-11 1.4E-15 97.7 3.8 48 265-315 51-99 (124)
41 1jm7_A BRCA1, breast cancer ty 99.0 7.5E-11 2.6E-15 93.9 3.5 49 266-317 21-72 (112)
42 2ckl_B Ubiquitin ligase protei 99.0 6.7E-11 2.3E-15 101.1 2.5 49 265-315 53-102 (165)
43 3l11_A E3 ubiquitin-protein li 99.0 4.2E-11 1.4E-15 96.2 0.7 50 263-315 12-62 (115)
44 3hct_A TNF receptor-associated 99.0 1.5E-10 5.3E-15 93.5 3.9 50 264-316 16-66 (118)
45 1rmd_A RAG1; V(D)J recombinati 99.0 1.2E-10 4.2E-15 93.6 2.4 50 265-317 22-72 (116)
46 1z6u_A NP95-like ring finger p 99.0 2.3E-10 7.8E-15 96.6 3.8 49 265-316 77-126 (150)
47 2vje_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 81.6 2.8 47 265-314 7-56 (64)
48 1e4u_A Transcriptional repress 98.9 1E-09 3.5E-14 82.4 4.9 54 264-317 9-64 (78)
49 1bor_A Transcription factor PM 98.9 2.5E-10 8.6E-15 80.1 1.2 48 265-318 5-52 (56)
50 1vyx_A ORF K3, K3RING; zinc-bi 98.9 8.3E-10 2.8E-14 78.8 3.7 47 265-314 5-58 (60)
51 2y1n_A E3 ubiquitin-protein li 98.9 1.2E-09 3.9E-14 105.1 4.5 48 266-316 332-380 (389)
52 1wgm_A Ubiquitin conjugation f 98.8 3.9E-09 1.3E-13 82.7 6.1 51 263-316 19-70 (98)
53 2kr4_A Ubiquitin conjugation f 98.8 2.4E-09 8.2E-14 81.6 4.6 50 264-316 12-61 (85)
54 2kre_A Ubiquitin conjugation f 98.8 3.1E-09 1.1E-13 83.5 5.3 51 263-316 26-76 (100)
55 3knv_A TNF receptor-associated 98.8 1E-09 3.5E-14 91.7 2.5 49 264-315 29-78 (141)
56 2vje_B MDM4 protein; proto-onc 98.8 1.3E-09 4.6E-14 78.3 2.3 47 266-315 7-56 (63)
57 3k1l_B Fancl; UBC, ring, RWD, 98.8 7.6E-10 2.6E-14 104.0 0.8 52 265-316 307-374 (381)
58 1jm7_B BARD1, BRCA1-associated 98.8 1.1E-09 3.7E-14 88.3 1.5 47 265-316 21-68 (117)
59 4ic3_A E3 ubiquitin-protein li 98.8 1.2E-09 4E-14 81.1 1.2 44 265-315 23-67 (74)
60 2ea5_A Cell growth regulator w 98.7 1.6E-08 5.3E-13 73.9 4.8 49 261-316 10-59 (68)
61 3hcs_A TNF receptor-associated 98.7 9.2E-09 3.1E-13 88.0 3.4 50 264-316 16-66 (170)
62 2yu4_A E3 SUMO-protein ligase 98.6 2.3E-08 7.7E-13 77.5 3.1 46 264-312 5-59 (94)
63 2c2l_A CHIP, carboxy terminus 98.6 3.4E-08 1.2E-12 90.2 4.6 51 263-316 205-256 (281)
64 2ecg_A Baculoviral IAP repeat- 98.6 1.2E-08 4.2E-13 75.6 1.1 45 265-316 24-69 (75)
65 1wim_A KIAA0161 protein; ring 98.5 3.8E-08 1.3E-12 76.0 2.4 48 265-312 4-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.4 4E-08 1.4E-12 73.8 0.5 43 266-315 18-61 (79)
67 2f42_A STIP1 homology and U-bo 98.4 1.6E-07 5.3E-12 81.3 3.6 50 264-316 104-154 (179)
68 2bay_A PRE-mRNA splicing facto 98.2 3E-07 1E-11 65.5 1.9 47 267-316 4-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.2 2E-07 6.8E-12 88.7 1.2 45 264-315 293-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.0 2.6E-06 9E-11 77.5 3.6 50 264-315 179-232 (267)
71 3vk6_A E3 ubiquitin-protein li 97.7 1.6E-05 5.4E-10 61.7 2.9 47 268-316 3-50 (101)
72 3nw0_A Non-structural maintena 97.7 2E-05 6.8E-10 71.2 3.4 51 265-318 179-232 (238)
73 2lri_C Autoimmune regulator; Z 95.0 0.02 6.9E-07 41.0 3.6 47 265-314 11-61 (66)
74 2ko5_A Ring finger protein Z; 94.2 0.014 4.7E-07 44.5 1.2 47 266-317 28-75 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 94.0 0.025 8.7E-07 43.3 2.4 36 265-300 2-38 (101)
76 2xb1_A Pygopus homolog 2, B-ce 92.7 0.017 5.9E-07 45.2 -0.4 49 267-315 4-64 (105)
77 1we9_A PHD finger family prote 92.1 0.045 1.5E-06 38.6 1.2 49 264-312 4-58 (64)
78 2l43_A N-teminal domain from h 91.4 0.061 2.1E-06 40.6 1.2 53 262-314 21-77 (88)
79 2l5u_A Chromodomain-helicase-D 88.6 0.24 8.2E-06 34.6 2.4 46 264-312 9-58 (61)
80 3lqh_A Histone-lysine N-methyl 88.3 0.18 6.2E-06 43.3 1.9 47 267-313 3-64 (183)
81 1f62_A Transcription factor WS 87.6 0.2 6.9E-06 33.4 1.4 44 268-311 2-49 (51)
82 1xwh_A Autoimmune regulator; P 86.4 0.15 5.1E-06 36.2 0.2 49 264-315 6-58 (66)
83 2vpb_A Hpygo1, pygopus homolog 86.2 0.48 1.6E-05 33.5 2.8 34 264-297 6-41 (65)
84 2k16_A Transcription initiatio 85.8 0.21 7.3E-06 36.1 0.8 50 265-315 17-71 (75)
85 3o36_A Transcription intermedi 85.3 0.19 6.3E-06 42.9 0.3 47 264-313 2-52 (184)
86 1wem_A Death associated transc 85.0 0.47 1.6E-05 34.4 2.4 49 267-315 16-73 (76)
87 2kgg_A Histone demethylase jar 84.6 0.33 1.1E-05 32.6 1.3 43 268-310 4-52 (52)
88 1wil_A KIAA1045 protein; ring 84.4 0.82 2.8E-05 34.0 3.4 33 263-299 12-47 (89)
89 1fp0_A KAP-1 corepressor; PHD 84.1 0.53 1.8E-05 35.5 2.3 48 262-312 21-72 (88)
90 1mm2_A MI2-beta; PHD, zinc fin 83.8 0.23 7.7E-06 34.7 0.2 48 265-315 8-59 (61)
91 2yql_A PHD finger protein 21A; 82.6 0.16 5.3E-06 34.8 -1.1 45 264-311 7-55 (56)
92 2ysm_A Myeloid/lymphoid or mix 81.6 0.42 1.4E-05 37.2 1.0 46 265-310 6-55 (111)
93 2puy_A PHD finger protein 21A; 81.4 0.15 5E-06 35.4 -1.6 48 265-315 4-55 (60)
94 1wep_A PHF8; structural genomi 81.3 1.8 6.1E-05 31.5 4.3 47 267-313 12-64 (79)
95 1wee_A PHD finger family prote 81.0 0.39 1.3E-05 34.5 0.6 48 265-313 15-67 (72)
96 2e6r_A Jumonji/ARID domain-con 80.8 0.22 7.5E-06 37.8 -0.9 48 264-312 14-66 (92)
97 1wew_A DNA-binding family prot 77.8 0.85 2.9E-05 33.3 1.5 47 267-314 17-74 (78)
98 2ri7_A Nucleosome-remodeling f 77.3 0.63 2.2E-05 39.0 0.8 47 265-312 7-59 (174)
99 2e6s_A E3 ubiquitin-protein li 76.8 0.43 1.5E-05 35.0 -0.4 44 267-311 27-76 (77)
100 3u5n_A E3 ubiquitin-protein li 76.7 0.39 1.3E-05 41.7 -0.7 45 265-313 6-55 (207)
101 3kqi_A GRC5, PHD finger protei 76.2 0.56 1.9E-05 34.0 0.1 47 267-313 10-62 (75)
102 1weu_A Inhibitor of growth fam 76.2 2 6.9E-05 32.4 3.3 47 265-314 34-87 (91)
103 2yt5_A Metal-response element- 74.7 1.4 4.8E-05 30.8 1.9 50 264-313 4-62 (66)
104 2rsd_A E3 SUMO-protein ligase 74.6 0.29 1E-05 34.8 -1.7 45 266-311 9-64 (68)
105 1wen_A Inhibitor of growth fam 73.8 2.1 7.3E-05 30.6 2.7 42 267-314 16-67 (71)
106 4gne_A Histone-lysine N-methyl 72.6 2.7 9.3E-05 32.7 3.3 47 264-316 13-66 (107)
107 3v43_A Histone acetyltransfera 72.5 1.1 3.6E-05 35.1 0.9 45 267-311 62-111 (112)
108 3asl_A E3 ubiquitin-protein li 72.4 0.52 1.8E-05 33.8 -0.9 43 268-311 20-68 (70)
109 1wev_A Riken cDNA 1110020M19; 71.5 0.42 1.4E-05 35.9 -1.6 55 265-319 15-79 (88)
110 3v43_A Histone acetyltransfera 69.3 5.1 0.00018 31.0 4.2 32 266-297 5-42 (112)
111 2ku3_A Bromodomain-containing 69.3 3.9 0.00013 29.3 3.2 50 263-312 13-66 (71)
112 3m62_A Ubiquitin conjugation f 67.7 3.2 0.00011 44.0 3.5 51 262-315 887-938 (968)
113 2lv9_A Histone-lysine N-methyl 67.3 1.7 5.9E-05 33.1 1.1 44 268-311 29-75 (98)
114 2kwj_A Zinc finger protein DPF 66.4 0.39 1.3E-05 37.8 -2.9 48 268-315 60-111 (114)
115 3ask_A E3 ubiquitin-protein li 64.6 1.3 4.6E-05 39.1 -0.1 44 267-311 175-224 (226)
116 3c6w_A P28ING5, inhibitor of g 63.2 1.3 4.4E-05 30.6 -0.4 41 267-311 9-57 (59)
117 3o70_A PHD finger protein 13; 61.2 1.6 5.3E-05 31.1 -0.2 45 265-311 18-66 (68)
118 3kv4_A PHD finger protein 8; e 60.3 1.5 5.3E-05 42.6 -0.5 48 267-314 5-58 (447)
119 2vnf_A ING 4, P29ING4, inhibit 59.4 1.5 5.3E-05 30.2 -0.5 41 267-311 10-58 (60)
120 3shb_A E3 ubiquitin-protein li 58.1 1.3 4.6E-05 32.3 -1.1 44 268-312 28-77 (77)
121 2lbm_A Transcriptional regulat 57.9 7.7 0.00026 31.7 3.4 45 265-312 62-117 (142)
122 3kv5_D JMJC domain-containing 56.3 2.3 7.9E-05 41.8 -0.0 48 265-312 35-88 (488)
123 2kwj_A Zinc finger protein DPF 53.8 5.1 0.00017 31.2 1.6 33 267-299 2-41 (114)
124 2g6q_A Inhibitor of growth pro 47.5 3.3 0.00011 28.8 -0.4 41 267-311 11-59 (62)
125 3mjh_B Early endosome antigen 46.2 2.3 7.9E-05 26.1 -1.2 17 265-281 4-20 (34)
126 2ysm_A Myeloid/lymphoid or mix 45.6 4.1 0.00014 31.4 -0.2 44 268-312 56-104 (111)
127 3i2d_A E3 SUMO-protein ligase 43.9 15 0.00051 34.7 3.4 46 267-314 250-299 (371)
128 1weo_A Cellulose synthase, cat 43.1 74 0.0025 23.7 6.3 50 265-314 15-69 (93)
129 4fo9_A E3 SUMO-protein ligase 42.5 16 0.00055 34.4 3.3 47 267-315 216-266 (360)
130 3ql9_A Transcriptional regulat 42.4 22 0.00075 28.4 3.7 44 265-312 56-111 (129)
131 2d8v_A Zinc finger FYVE domain 41.1 15 0.00052 25.8 2.2 31 264-298 6-37 (67)
132 1z60_A TFIIH basal transcripti 41.0 12 0.00041 25.8 1.7 41 267-309 16-58 (59)
133 1fjk_A Cardiac phospholamban; 37.6 19 0.00066 23.3 2.1 14 179-192 32-45 (52)
134 2cu8_A Cysteine-rich protein 2 37.3 27 0.00092 24.3 3.2 40 266-315 9-48 (76)
135 2gmg_A Hypothetical protein PF 36.4 6.4 0.00022 30.4 -0.4 26 285-315 71-96 (105)
136 1x62_A C-terminal LIM domain p 36.4 30 0.001 24.3 3.3 39 265-314 14-52 (79)
137 2co8_A NEDD9 interacting prote 35.5 37 0.0013 24.1 3.7 42 265-316 14-55 (82)
138 1iml_A CRIP, cysteine rich int 34.3 17 0.00057 25.4 1.7 15 265-279 26-40 (76)
139 2pk7_A Uncharacterized protein 33.7 10 0.00035 26.9 0.4 21 296-316 1-21 (69)
140 2jmi_A Protein YNG1, ING1 homo 31.9 4.6 0.00016 30.4 -1.8 41 267-311 26-75 (90)
141 2jny_A Uncharacterized BCR; st 31.4 8.6 0.00029 27.2 -0.4 21 296-316 3-23 (67)
142 2dj7_A Actin-binding LIM prote 30.6 39 0.0013 23.9 3.2 40 265-314 14-53 (80)
143 1wd2_A Ariadne-1 protein homol 29.6 17 0.00058 24.9 0.9 19 299-317 1-20 (60)
144 2jvx_A NF-kappa-B essential mo 29.2 12 0.0004 21.8 0.0 13 303-315 3-15 (28)
145 1zbd_B Rabphilin-3A; G protein 29.0 24 0.00082 28.3 1.9 33 265-297 54-88 (134)
146 1x4l_A Skeletal muscle LIM-pro 27.3 40 0.0014 23.0 2.7 39 267-314 6-46 (72)
147 2d8y_A Eplin protein; LIM doma 27.0 1.2E+02 0.0041 21.7 5.4 41 266-316 15-55 (91)
148 1z2q_A LM5-1; membrane protein 26.5 83 0.0029 22.6 4.4 35 265-299 20-55 (84)
149 2ks1_B Epidermal growth factor 26.3 34 0.0011 22.1 1.8 33 55-87 7-39 (44)
150 1x64_A Alpha-actinin-2 associa 25.6 1E+02 0.0036 21.9 4.8 41 265-316 24-64 (89)
151 1vfy_A Phosphatidylinositol-3- 23.9 49 0.0017 23.2 2.6 33 266-298 11-44 (73)
152 2kpi_A Uncharacterized protein 23.8 9 0.00031 26.0 -1.4 19 297-315 4-22 (56)
153 2jne_A Hypothetical protein YF 23.5 25 0.00085 26.7 0.9 39 267-314 33-72 (101)
154 2o35_A Hypothetical protein DU 23.4 31 0.0011 26.3 1.5 12 291-302 43-54 (105)
155 3fyb_A Protein of unknown func 23.0 32 0.0011 26.2 1.5 11 291-301 42-52 (104)
156 2lcq_A Putative toxin VAPC6; P 22.6 27 0.00093 28.5 1.1 26 285-316 136-161 (165)
157 1yod_A Water-solublized phosph 22.5 66 0.0022 18.6 2.4 14 179-192 11-24 (30)
158 1wfk_A Zinc finger, FYVE domai 22.4 53 0.0018 24.1 2.6 52 265-316 8-67 (88)
159 1dvp_A HRS, hepatocyte growth 22.2 38 0.0013 29.1 2.1 34 266-299 161-195 (220)
160 2l2t_A Receptor tyrosine-prote 22.0 50 0.0017 21.3 2.0 33 55-87 6-38 (44)
161 2dar_A PDZ and LIM domain prot 22.0 1.2E+02 0.0042 21.5 4.6 40 265-315 24-63 (90)
162 3o7a_A PHD finger protein 13 v 21.8 30 0.001 22.7 1.0 44 267-311 4-51 (52)
163 2d8x_A Protein pinch; LIM doma 21.7 45 0.0015 22.6 2.0 39 267-316 6-44 (70)
164 3f6q_B LIM and senescent cell 21.7 45 0.0015 22.5 2.0 41 267-316 12-52 (72)
165 1x61_A Thyroid receptor intera 21.7 86 0.003 21.1 3.5 38 267-313 6-43 (72)
166 1x4u_A Zinc finger, FYVE domai 21.2 87 0.003 22.5 3.6 33 267-299 15-48 (84)
167 2jr6_A UPF0434 protein NMA0874 21.0 11 0.00037 26.8 -1.5 19 297-315 2-20 (68)
168 3vhs_A ATPase wrnip1; zinc fin 20.3 26 0.00089 19.9 0.3 11 305-315 8-18 (29)
169 1g47_A Pinch protein; LIM doma 20.2 96 0.0033 21.2 3.6 42 266-316 11-52 (77)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.71 E-value=7.1e-18 Score=130.95 Aligned_cols=76 Identities=36% Similarity=0.655 Sum_probs=65.4
Q ss_pred cCCCCHHHHhhcccceeeeccccccccCCCCCCCCCcccccCCCCCCcccCCCCCcccccccccccCCCceEEeCcCCcc
Q 020491 212 QEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHF 291 (325)
Q Consensus 212 ~~~~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~F 291 (325)
..+++++.++.||..++...... ..++..|+||+++|.+++.++.|||+|.|
T Consensus 14 ~~~~s~~~i~~lp~~~~~~~~~~----------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~F 65 (91)
T 2l0b_A 14 NPPASKESIDALPEILVTEDHGA----------------------------VGQEMCCPICCSEYVKGDVATELPCHHYF 65 (91)
T ss_dssp CCCCCHHHHHTSCEEECCTTCSS----------------------------SSSCSEETTTTEECCTTCEEEEETTTEEE
T ss_pred CCCCCHHHHHhCCCeeecccccc----------------------------cCCCCCCcccChhhcCCCcEEecCCCChH
Confidence 48999999999999887643211 12447899999999999999999999999
Q ss_pred chHHHHHHHhcCCCCccccccccC
Q 020491 292 HCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 292 H~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
|..||++|++.+.+||+||..+..
T Consensus 66 h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 66 HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred HHHHHHHHHHcCCcCcCcCccCCC
Confidence 999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6e-18 Score=126.38 Aligned_cols=53 Identities=45% Similarity=1.014 Sum_probs=49.0
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
++.+|+||+++|.+++.++.+||+|.||.+||++|++.+.+||+||+++....
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 45789999999999999999999999999999999999999999999987653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.60 E-value=4e-16 Score=109.13 Aligned_cols=50 Identities=50% Similarity=1.194 Sum_probs=46.6
Q ss_pred CCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcCCCCcccccccc
Q 020491 265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
++.+|+||+++|++++.+..+| |+|.||.+||++|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4578999999999999999998 9999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=111.85 Aligned_cols=55 Identities=42% Similarity=1.029 Sum_probs=50.0
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 318 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 318 (325)
.++..|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||..+....+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 4567899999999999999999999999999999999999999999999976544
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=113.38 Aligned_cols=56 Identities=36% Similarity=0.812 Sum_probs=50.7
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCCc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 319 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~~ 319 (325)
.++.+|+||+++|.+++.++.|||+|.||.+||++|++.+.+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 45679999999999999999999999999999999999999999999999765544
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=1.5e-15 Score=113.91 Aligned_cols=56 Identities=32% Similarity=0.849 Sum_probs=50.8
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCCc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 319 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~~ 319 (325)
.++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 45679999999999999999999999999999999999999999999999765544
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.8e-15 Score=112.46 Aligned_cols=51 Identities=31% Similarity=0.684 Sum_probs=42.4
Q ss_pred CCcccccccccccC-----------CCceEEeC-cCCccchHHHHHHHhcCCCCccccccccC
Q 020491 265 EDAECCICLSAYDD-----------GVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~-----------~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
++++|+||+++|++ ++.++.+| |+|.||.+||++||+.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45668888877754 45577776 99999999999999999999999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.50 E-value=1.1e-14 Score=101.61 Aligned_cols=50 Identities=34% Similarity=0.690 Sum_probs=44.2
Q ss_pred CCcccccccccccCC-CceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 265 EDAECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
++.+|+||+++|.++ +..+.+||+|.||.+||++|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 457899999999765 45788899999999999999999999999999874
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=1.6e-14 Score=116.04 Aligned_cols=56 Identities=25% Similarity=0.473 Sum_probs=45.9
Q ss_pred CCcccccccccccCCC---------------ceEEeCcCCccchHHHHHHH-----hcCCCCccccccccCCCCcc
Q 020491 265 EDAECCICLSAYDDGV---------------ELRELPCGHHFHCACVDKWL-----YINATCPLCKYNILKSSSNQ 320 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~---------------~lr~LPC~H~FH~~CI~~WL-----~~~~tCPlCR~~I~~~~~~~ 320 (325)
.+.+|+|||++|.+++ .++.+||+|.||..||++|+ +.+.+||+||..+.....++
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~q 99 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ 99 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCC
Confidence 4468999999997753 44578999999999999999 45779999999987665543
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.1e-14 Score=107.84 Aligned_cols=55 Identities=33% Similarity=0.757 Sum_probs=46.4
Q ss_pred CCCCCcccccccccccCCCceEEeCcC-----CccchHHHHHHHhcC--CCCccccccccCCC
Q 020491 262 LSNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYIN--ATCPLCKYNILKSS 317 (325)
Q Consensus 262 ~~~ed~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~ 317 (325)
.+.++..|.||+++|++++.+ .+||+ |.||.+||++|++.+ .+||+||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 344567899999999988776 59997 999999999999876 48999999986543
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.3e-14 Score=103.59 Aligned_cols=52 Identities=29% Similarity=0.643 Sum_probs=45.7
Q ss_pred CCCcccccccccccCC----CceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 264 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
.++..|+||++.|.+. ..+..++|+|.||.+||++|++.+.+||+||..+.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4568899999999874 445789999999999999999999999999998864
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.45 E-value=3.7e-14 Score=113.13 Aligned_cols=50 Identities=28% Similarity=0.571 Sum_probs=43.7
Q ss_pred CCcccccccccccCC---------------CceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 265 EDAECCICLSAYDDG---------------VELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~---------------~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
+++.|+||++.|++. ..++.+||+|.||..||++||+.+.+||+||.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 457899999999865 13778899999999999999999999999999853
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.45 E-value=2.6e-14 Score=104.87 Aligned_cols=54 Identities=28% Similarity=0.618 Sum_probs=47.2
Q ss_pred CCCcccccccccccCC----CceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491 264 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
.++.+|+||++.|.+. +....+||+|.||.+||++|++.+.+||+||..+..+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 4567899999999864 56688999999999999999999999999999987543
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.44 E-value=4.1e-14 Score=101.54 Aligned_cols=52 Identities=29% Similarity=0.623 Sum_probs=45.8
Q ss_pred CCcccccccccccCC----CceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
++.+|+||++.|.++ +.+..++|+|.||.+|+++|++.+.+||+||.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 457899999999864 4567899999999999999999999999999998764
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.40 E-value=1.1e-13 Score=100.87 Aligned_cols=50 Identities=36% Similarity=0.806 Sum_probs=43.9
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
+++..|+||++.+.++ ...+||+|.||..|+.+|++.+.+||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3457899999998754 4789999999999999999999999999999864
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=101.25 Aligned_cols=51 Identities=35% Similarity=0.989 Sum_probs=45.3
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 318 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 318 (325)
.++..|+||++.+.+ ..+||+|.||..||++|++.+.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 456789999999877 789999999999999999999999999999976543
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=100.92 Aligned_cols=49 Identities=33% Similarity=0.689 Sum_probs=43.9
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
.++..|+||++.+.+. ..+||+|.||.+||++|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999998776 678999999999999999999999999999864
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=5.7e-13 Score=98.35 Aligned_cols=54 Identities=22% Similarity=0.547 Sum_probs=46.3
Q ss_pred CCCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCCCCcc
Q 020491 264 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQ 320 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~~~ 320 (325)
.++..|+||++.|.+. ..+ +|+|.||.+||++|++.+.+||+||..+...+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 4568999999999875 455 99999999999999999999999999997765443
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=9.6e-13 Score=97.78 Aligned_cols=54 Identities=26% Similarity=0.610 Sum_probs=45.6
Q ss_pred CCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcC--CCCccccccccCCCCcc
Q 020491 264 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN--ATCPLCKYNILKSSSNQ 320 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~~~~ 320 (325)
.++..|+||++.|.+. ..+| |+|.||..||++|++.+ .+||+||..+...+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALS 69 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccc
Confidence 4568999999999876 6799 99999999999999876 68999999876554443
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=99.68 Aligned_cols=53 Identities=28% Similarity=0.626 Sum_probs=46.4
Q ss_pred CCCcccccccccccCCCc-eEEeCcCCccchHHHHHHHhcC---CCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLYIN---ATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~-lr~LPC~H~FH~~CI~~WL~~~---~tCPlCR~~I~~~ 316 (325)
.++.+|+||++.|.+++. .+.+||+|.||.+||.+|++.+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456789999999998764 6788999999999999999876 7999999988654
No 21
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.3e-13 Score=111.74 Aligned_cols=50 Identities=28% Similarity=0.558 Sum_probs=1.0
Q ss_pred CCcccccccccccCC-------------C--ceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 265 EDAECCICLSAYDDG-------------V--ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~-------------~--~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
+++.|+||+++|++. + .+..+||+|.||..||++||+.+.+||+||.+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457899999999863 2 2334589999999999999999999999999853
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=96.03 Aligned_cols=50 Identities=32% Similarity=0.668 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHh---cCCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY---INATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~---~~~tCPlCR~~I~~~ 316 (325)
.++..|+||++.|.+. ..+||+|.||.+||.+|++ .+.+||+||..+..+
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4567999999998865 6679999999999999997 456899999998764
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=98.52 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=43.0
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
.++..|+||++.|.+. ..+||+|.||..||.+|++.+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3457899999999775 56899999999999999999999999999985
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2e-12 Score=93.66 Aligned_cols=50 Identities=24% Similarity=0.560 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHH-hcCCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL-~~~~tCPlCR~~I~~~ 316 (325)
.++..|+||++.+.++. .++|+|.||.+||.+|+ +.+.+||+||..+..+
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45689999999998773 47999999999999999 4677999999998764
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.24 E-value=1.9e-12 Score=107.69 Aligned_cols=48 Identities=27% Similarity=0.837 Sum_probs=43.0
Q ss_pred CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
+..|+||++.|.++ ..+||+|.||..||.+|++.+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 35799999999876 6799999999999999999999999999998643
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=88.65 Aligned_cols=43 Identities=33% Similarity=0.720 Sum_probs=37.9
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHh---cCCCCccc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY---INATCPLC 309 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~---~~~tCPlC 309 (325)
.++..|+||++.|.+. ..+||+|.||.+||.+|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4568999999999876 6789999999999999998 45689998
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=3.1e-12 Score=104.53 Aligned_cols=54 Identities=28% Similarity=0.618 Sum_probs=47.2
Q ss_pred CCCcccccccccccCC----CceEEeCcCCccchHHHHHHHhcCCCCccccccccCCC
Q 020491 264 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
.++.+|+||++.|.++ +..+.++|+|.||.+||++|++.+.+||+||..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3557899999999865 56688999999999999999999999999999987544
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=1.6e-11 Score=92.57 Aligned_cols=50 Identities=26% Similarity=0.593 Sum_probs=44.1
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc------CCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI------NATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~------~~tCPlCR~~I~~~ 316 (325)
.++..|+||++.|.+. ..+||+|.||..||.+|++. +..||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4567999999999887 57899999999999999987 67899999998754
No 29
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=91.89 Aligned_cols=53 Identities=28% Similarity=0.565 Sum_probs=44.1
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC--CCCccccccccCCCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNILKSSS 318 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~~ 318 (325)
+...+|+||.+.+..++... .|+|.||..||++||+.+ .+||+||.+......
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 34578999999999875443 799999999999999987 899999998765433
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.9e-11 Score=92.22 Aligned_cols=50 Identities=30% Similarity=0.690 Sum_probs=44.0
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc------CCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI------NATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~------~~tCPlCR~~I~~~ 316 (325)
.++..|+||++.|.+. ..+||+|.||.+|+.+|++. +..||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4567999999999876 45799999999999999987 78999999998754
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=86.47 Aligned_cols=43 Identities=33% Similarity=0.931 Sum_probs=37.1
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHH---hcCCCCccc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL---YINATCPLC 309 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL---~~~~tCPlC 309 (325)
.++..|+||++.|.++ ..+||+|.||.+||++|+ +.+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3567899999999887 558999999999999995 456889998
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.17 E-value=5.5e-12 Score=99.19 Aligned_cols=49 Identities=29% Similarity=0.685 Sum_probs=42.7
Q ss_pred CCcccccccccccCCCceEE-eCcCCccchHHHHHHHhcC-CCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELRE-LPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~-LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~ 316 (325)
++..|+||++.|.+. +. ++|+|.||..||.+|++.+ .+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 457899999999865 55 8999999999999999987 7999999998653
No 33
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.17 E-value=1.2e-11 Score=92.36 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=44.0
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~ 316 (325)
.++..|+||++.|.++ ..+||+|.||..||.+|++. +.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3567899999999876 66899999999999999987 78999999998654
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.5e-11 Score=88.73 Aligned_cols=53 Identities=28% Similarity=0.542 Sum_probs=43.2
Q ss_pred CCcccccccc-cccCCCce-EEeCcCCccchHHHHHHHhc-CCCCccccccccCCC
Q 020491 265 EDAECCICLS-AYDDGVEL-RELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS 317 (325)
Q Consensus 265 ed~~C~ICL~-~y~~~~~l-r~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~ 317 (325)
++..|+||++ .|.++... ..+||+|.||.+||++|+.. +.+||+||..+.+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3468999999 78777543 45799999999999999765 468999999997654
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.17 E-value=6.2e-12 Score=93.97 Aligned_cols=50 Identities=28% Similarity=0.613 Sum_probs=43.3
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-------CCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-------NATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-------~~tCPlCR~~I~~~ 316 (325)
.++..|+||++.|.+. ..+||+|.||.+||.+|++. +.+||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 3567899999999886 45899999999999999987 67899999998653
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.16 E-value=1.2e-11 Score=101.04 Aligned_cols=53 Identities=28% Similarity=0.631 Sum_probs=46.4
Q ss_pred CCCcccccccccccCC----CceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
+++..|+||++.|++. .....++|+|.||..||++|++.+.+||+||.++.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999999863 4557889999999999999999999999999999764
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.15 E-value=9.5e-12 Score=97.36 Aligned_cols=48 Identities=23% Similarity=0.692 Sum_probs=42.6
Q ss_pred CCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
++..|+||++.|.++ ..+ ||+|.||..||.+|++.+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999875 455 899999999999999999999999998875
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.12 E-value=2.6e-11 Score=96.43 Aligned_cols=49 Identities=24% Similarity=0.670 Sum_probs=43.2
Q ss_pred CCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
++..|+||++.|.+. ..+ ||+|.||..||.+|++.+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 457899999999875 455 9999999999999999999999999998764
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.11 E-value=7.4e-11 Score=90.84 Aligned_cols=48 Identities=29% Similarity=0.691 Sum_probs=42.1
Q ss_pred CCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcC--CCCcccccccc
Q 020491 264 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN--ATCPLCKYNIL 314 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~--~tCPlCR~~I~ 314 (325)
.++..|+||++.|.++ ..+| |+|.||..||.+|+..+ .+||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4568999999999977 6899 99999999999999754 58999999874
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.09 E-value=4e-11 Score=97.70 Aligned_cols=48 Identities=23% Similarity=0.566 Sum_probs=42.1
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-CCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~ 315 (325)
++..|+||++.|.++ ..+||+|.||..||.+|++.+ .+||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346899999999876 678999999999999999855 499999999976
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=7.5e-11 Score=93.90 Aligned_cols=49 Identities=39% Similarity=0.666 Sum_probs=42.0
Q ss_pred CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCC---CCccccccccCCC
Q 020491 266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA---TCPLCKYNILKSS 317 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~---tCPlCR~~I~~~~ 317 (325)
+..|+||++.|.+. ..+||+|.||..||.+|+..+. +||+||..+....
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 35899999999876 4579999999999999998754 8999999987643
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.02 E-value=6.7e-11 Score=101.07 Aligned_cols=49 Identities=27% Similarity=0.646 Sum_probs=41.8
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~ 315 (325)
++..|+||++.|.+. +..+||+|.||..||++|++. +.+||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456899999999874 333499999999999999997 7889999999854
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01 E-value=4.2e-11 Score=96.19 Aligned_cols=50 Identities=24% Similarity=0.635 Sum_probs=43.4
Q ss_pred CCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccC
Q 020491 263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILK 315 (325)
Q Consensus 263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~ 315 (325)
..++..|+||++.|.+. ..+||+|.||..||.+|++. +.+||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34568899999999876 67899999999999999976 6789999999863
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.01 E-value=1.5e-10 Score=93.47 Aligned_cols=50 Identities=34% Similarity=0.673 Sum_probs=43.5
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCC-CCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~~ 316 (325)
.++..|+||++.+.++ ..+||+|.||..||.+|++.+. +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4557999999999876 6689999999999999998765 999999998764
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=1.2e-10 Score=93.61 Aligned_cols=50 Identities=28% Similarity=0.666 Sum_probs=43.4
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS 317 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~ 317 (325)
++..|+||++.+.++ ..+||+|.||..||.+|++. +.+||+||..+...+
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 357899999999876 56899999999999999987 789999999987543
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.97 E-value=2.3e-10 Score=96.61 Aligned_cols=49 Identities=16% Similarity=0.449 Sum_probs=42.8
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCC-CCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~~ 316 (325)
++..|+||++.|.++ ..+||+|.||..||.+|++.+. +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 346899999999876 5689999999999999998764 899999999765
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.93 E-value=3.5e-10 Score=81.64 Aligned_cols=47 Identities=28% Similarity=0.541 Sum_probs=40.4
Q ss_pred CCcccccccccccCCCceEEe--CcCCc-cchHHHHHHHhcCCCCcccccccc
Q 020491 265 EDAECCICLSAYDDGVELREL--PCGHH-FHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L--PC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
++.+|.||++...+. ..+ ||+|. |+.+|+++|.+.+..||+||.+|.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 457899999986654 444 99999 789999999999999999999885
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.91 E-value=1e-09 Score=82.43 Aligned_cols=54 Identities=19% Similarity=0.432 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCCc-eEEeCcCCccchHHHHHHHh-cCCCCccccccccCCC
Q 020491 264 NEDAECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLY-INATCPLCKYNILKSS 317 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~-lr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~~~ 317 (325)
.++.+|+||++.+...+. ...++|+|.||..|+.++.+ .+..||.||..+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 456799999999865432 22234999999999999875 4678999999987654
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=2.5e-10 Score=80.10 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=40.8
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCCCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 318 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 318 (325)
++..|+||++.|.+. +.|||+|.||..|+.+| +..||+||..+....+
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 456899999999987 67999999999999884 6789999999875443
No 50
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.89 E-value=8.3e-10 Score=78.76 Aligned_cols=47 Identities=32% Similarity=0.716 Sum_probs=37.8
Q ss_pred CCcccccccccccCCCceEEeCcC--C---ccchHHHHHHHhc--CCCCcccccccc
Q 020491 265 EDAECCICLSAYDDGVELRELPCG--H---HFHCACVDKWLYI--NATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~--H---~FH~~CI~~WL~~--~~tCPlCR~~I~ 314 (325)
+...|.||+++. ++++ .+||+ | .||.+|+++|++. +.+||+||+.+.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 457899999983 3344 58965 4 9999999999975 678999999864
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.86 E-value=1.2e-09 Score=105.15 Aligned_cols=48 Identities=29% Similarity=0.695 Sum_probs=42.4
Q ss_pred CcccccccccccCCCceEEeCcCCccchHHHHHHHh-cCCCCccccccccCC
Q 020491 266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKS 316 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~~ 316 (325)
..+|+||++.+.+. ..+||+|.||..|+.+|++ .+.+||+||..+...
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 36899999998664 7899999999999999998 788999999998653
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.84 E-value=3.9e-09 Score=82.67 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=45.8
Q ss_pred CCCCcccccccccccCCCceEEeCcC-CccchHHHHHHHhcCCCCccccccccCC
Q 020491 263 SNEDAECCICLSAYDDGVELRELPCG-HHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 263 ~~ed~~C~ICL~~y~~~~~lr~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
.+++..|+||++-|+|+ ..+||+ |.|...||.+|+..+.+||+||..+...
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 35678999999999998 779999 9999999999999899999999988653
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.83 E-value=2.4e-09 Score=81.63 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=45.1
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
+++..|+||++-|+++ ..+||||.|...||.+|+..+.+||+||..+...
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4568999999999998 7899999999999999999999999999987643
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.83 E-value=3.1e-09 Score=83.53 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=45.9
Q ss_pred CCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
.+++..|+||++-|.++ ..+||||.|...||.+|+..+.+||+||..+...
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 35678999999999998 7899999999999999999899999999988653
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.82 E-value=1e-09 Score=91.66 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=42.5
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCC-CCccccccccC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~ 315 (325)
+++..|+||++.+.++ ..++|+|.||..||.+|++.+. +||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4567999999999887 6689999999999999998664 89999998743
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.81 E-value=1.3e-09 Score=78.29 Aligned_cols=47 Identities=28% Similarity=0.557 Sum_probs=40.0
Q ss_pred CcccccccccccCCCceEEe--CcCCc-cchHHHHHHHhcCCCCccccccccC
Q 020491 266 DAECCICLSAYDDGVELREL--PCGHH-FHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~L--PC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
+..|.||++...+. ..+ ||+|. |+.+|+.+|.+.+..||+||.+|..
T Consensus 7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 46899999986554 344 99998 9999999999988999999999853
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.79 E-value=7.6e-10 Score=103.97 Aligned_cols=52 Identities=31% Similarity=0.742 Sum_probs=41.5
Q ss_pred CCcccccccccccCCCceE-----EeCcCCccchHHHHHHHhcC-----------CCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELR-----ELPCGHHFHCACVDKWLYIN-----------ATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr-----~LPC~H~FH~~CI~~WL~~~-----------~tCPlCR~~I~~~ 316 (325)
+..+|+||++.+.++.++. ..+|+|.||..|+.+||+.. .+||.||++|.-+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4579999999999844332 24699999999999999853 5799999998643
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.1e-09 Score=88.28 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
++..|+||++.|.++ ..+ ||+|.||..||.+|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 457899999999877 566 8999999999999998 7899999998543
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.77 E-value=1.2e-09 Score=81.07 Aligned_cols=44 Identities=30% Similarity=0.583 Sum_probs=38.4
Q ss_pred CCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
++..|+||++.+.+. ..+||+|. |+..|+.+| .+||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 456899999987664 67899999 999999999 789999998864
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.6e-08 Score=73.87 Aligned_cols=49 Identities=24% Similarity=0.617 Sum_probs=39.9
Q ss_pred cCCCCCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccCC
Q 020491 261 VLSNEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 261 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
....++..|.||++...+ ...+||+|. |+.+|+.. ...||+||..|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred ccCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 334556899999998655 478999999 99999984 57899999998653
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.66 E-value=9.2e-09 Score=88.03 Aligned_cols=50 Identities=34% Similarity=0.664 Sum_probs=43.4
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-CCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~ 316 (325)
.++..|+||++.+.++ ..+||+|.|+..||.+|++.+ .+||+||..+..+
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4567999999999887 568999999999999999864 4999999998764
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=2.3e-08 Score=77.55 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=39.6
Q ss_pred CCCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcC------CCCcc--cccc
Q 020491 264 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN------ATCPL--CKYN 312 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~------~tCPl--CR~~ 312 (325)
.++..|+||++-|.++ ..+| |+|.|...||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3457899999999987 6786 99999999999999864 48999 9865
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=3.4e-08 Score=90.15 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=44.0
Q ss_pred CCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-CCCccccccccCC
Q 020491 263 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS 316 (325)
Q Consensus 263 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~ 316 (325)
.+++..|+||++-|.++ ..+||||.|+..||.+|+..+ .+||+||.++...
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 34668899999999988 789999999999999999874 4599999988643
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.2e-08 Score=75.58 Aligned_cols=45 Identities=29% Similarity=0.574 Sum_probs=37.5
Q ss_pred CCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
++..|+||++.+.+. ..+||+|. |+.+|+.+ ...||+||..+...
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 456899999997665 56899999 99999965 47899999998653
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=3.8e-08 Score=76.03 Aligned_cols=48 Identities=21% Similarity=0.549 Sum_probs=40.3
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc--------CCCCcc--cccc
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPL--CKYN 312 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~--------~~tCPl--CR~~ 312 (325)
+..+|+||++++.+++-+...+|+|.|+.+|+.++++. .-.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 44689999999988776666689999999999999974 237999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.40 E-value=4e-08 Score=73.76 Aligned_cols=43 Identities=23% Similarity=0.665 Sum_probs=36.7
Q ss_pred CcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccC
Q 020491 266 DAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
+..|.||++.+.+. ..+||+|. |+.+|+.+| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 46899999986654 78999999 999999987 389999998864
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.38 E-value=1.6e-07 Score=81.33 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC-CCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~ 316 (325)
+++..|+||++-|.++ ..+||||.|...||.+|+..+ .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 5668999999999987 778999999999999999874 4699999988643
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.24 E-value=3e-07 Score=65.53 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=41.9
Q ss_pred cccccccccccCCCceEEe-CcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 267 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
..|+||++-++|+ ..+ +|+|.|-..||.+|++.+.+||+++.++...
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 4799999999977 667 7999999999999999889999999988654
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.24 E-value=2e-07 Score=88.69 Aligned_cols=45 Identities=27% Similarity=0.646 Sum_probs=39.1
Q ss_pred CCCcccccccccccCCCceEEeCcCCc-cchHHHHHHHhcCCCCccccccccC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
.++..|+||++.+.+. ..+||+|. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3557899999998765 77899999 999999998 689999998864
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.01 E-value=2.6e-06 Score=77.46 Aligned_cols=50 Identities=22% Similarity=0.442 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC--CCCcc--ccccccC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPL--CKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~--~tCPl--CR~~I~~ 315 (325)
..+..|+||++-|.++ ++.+.|||.|.+.||.+|++.+ .+||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 4567999999999777 3445899999999999999865 47999 9997754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.71 E-value=1.6e-05 Score=61.65 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=37.4
Q ss_pred ccccccccccCCCceEEeCcCCccchHHHHHHHhc-CCCCccccccccCC
Q 020491 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 316 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~ 316 (325)
-|.+|--.+.. ..|..||+|.|+-+|+..|.++ ..+||.|+.+|..-
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 36666555443 4589999999999999999865 68899999998653
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.67 E-value=2e-05 Score=71.15 Aligned_cols=51 Identities=31% Similarity=0.599 Sum_probs=41.4
Q ss_pred CCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcCC--CCccccccccCCCC
Q 020491 265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINA--TCPLCKYNILKSSS 318 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~--tCPlCR~~I~~~~~ 318 (325)
.-.+|.||.+-...| ...+ |+|.||..|+++|++.+. +||.|+.+-....+
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 357899999998877 3444 999999999999998654 89999998765433
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.99 E-value=0.02 Score=40.96 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=33.2
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCC----CCcccccccc
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA----TCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~----tCPlCR~~I~ 314 (325)
.++.|.||-+. ++.+.--.|...||..|++..|.... .||.|+.+-.
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 45789999743 43332224889999999998886543 6999987543
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.21 E-value=0.014 Score=44.52 Aligned_cols=47 Identities=21% Similarity=0.508 Sum_probs=38.2
Q ss_pred CcccccccccccCCCceEEeCcC-CccchHHHHHHHhcCCCCccccccccCCC
Q 020491 266 DAECCICLSAYDDGVELRELPCG-HHFHCACVDKWLYINATCPLCKYNILKSS 317 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 317 (325)
...|-.|.-+.+ ....|+ |+.+..|+..-|.++..||+|+.++..+-
T Consensus 28 ~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 28 PQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 457999987733 235576 99999999999999999999999997653
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.95 E-value=0.025 Score=43.28 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=28.7
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHH-HH
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDK-WL 300 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~-WL 300 (325)
++..|.||+++|..+....-++|+|.|+..|+.. |-
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4578999998865555555589999999999998 54
No 76
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=92.72 E-value=0.017 Score=45.19 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=34.7
Q ss_pred cccccccccccCCCceEEe--CcCCccchHHHHHHH----h------cCCCCccccccccC
Q 020491 267 AECCICLSAYDDGVELREL--PCGHHFHCACVDKWL----Y------INATCPLCKYNILK 315 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CI~~WL----~------~~~tCPlCR~~I~~ 315 (325)
..|.||...|.++.....- .|...||.+|+.-=- . .+-.||.|+..-..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 5799999999877665555 488999999984211 0 23469999765443
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.13 E-value=0.045 Score=38.56 Aligned_cols=49 Identities=22% Similarity=0.416 Sum_probs=34.6
Q ss_pred CCCcccccccccccCCCceEEe-CcCCccchHHHHHHHh-----cCCCCcccccc
Q 020491 264 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLY-----INATCPLCKYN 312 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 312 (325)
.++..|+||-..|.++.....- .|..-||..|+.---. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4557899999998766544444 3889999999864322 24569999753
No 78
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=91.38 E-value=0.061 Score=40.64 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCCCCcccccccccc-cCCCceEEeC-cCCccchHHHHHHHh--cCCCCcccccccc
Q 020491 262 LSNEDAECCICLSAY-DDGVELRELP-CGHHFHCACVDKWLY--INATCPLCKYNIL 314 (325)
Q Consensus 262 ~~~ed~~C~ICL~~y-~~~~~lr~LP-C~H~FH~~CI~~WL~--~~~tCPlCR~~I~ 314 (325)
...++..|.||...- .+++.+..-. |.-.||..|+..=+. ..=.||.|+....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 345678999998764 2233333333 778999999975321 1224999976543
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.57 E-value=0.24 Score=34.56 Aligned_cols=46 Identities=22% Similarity=0.543 Sum_probs=30.8
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCcccccc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYN 312 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~ 312 (325)
.++..|.+|-.. ++.+.--.|...||..|++.=+... =.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999863 3322222377899999999755432 359999653
No 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=88.29 E-value=0.18 Score=43.26 Aligned_cols=47 Identities=26% Similarity=0.501 Sum_probs=34.1
Q ss_pred cccccccccccCCCc---eEEeC-cCCccchHHHHH------HHh-----cCCCCccccccc
Q 020491 267 AECCICLSAYDDGVE---LRELP-CGHHFHCACVDK------WLY-----INATCPLCKYNI 313 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~---lr~LP-C~H~FH~~CI~~------WL~-----~~~tCPlCR~~I 313 (325)
..|+||-..|.+++. ....- |.+.||..|+.- =+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999998873 44444 889999999842 111 146899998754
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.56 E-value=0.2 Score=33.42 Aligned_cols=44 Identities=27% Similarity=0.562 Sum_probs=27.9
Q ss_pred ccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccc
Q 020491 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKY 311 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~ 311 (325)
.|.||-..-+.++-+.--.|...||..|++.=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888764333322222388999999997544332 24999964
No 82
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.37 E-value=0.15 Score=36.19 Aligned_cols=49 Identities=24% Similarity=0.488 Sum_probs=32.1
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccccccC
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK 315 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~ 315 (325)
.++..|.||-.. ++.+.-=.|...||..|+++=+... =.||.|+..-.+
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 58 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence 356789999864 3322222388999999998655432 249999765433
No 83
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=86.22 E-value=0.48 Score=33.53 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=25.7
Q ss_pred CCCcccccccccccCCCceEEe--CcCCccchHHHH
Q 020491 264 NEDAECCICLSAYDDGVELREL--PCGHHFHCACVD 297 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CI~ 297 (325)
+....|++|...|.+++..+.- .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4557899999999887765555 588999999983
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=85.78 E-value=0.21 Score=36.11 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=33.6
Q ss_pred CCcccccccccccCCCceEEe-CcCCccchHHHHHHHhc----CCCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYI----NATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~----~~tCPlCR~~I~~ 315 (325)
++..|.||-.... ++....- .|...||..|+..-... .-.||.|+..+.+
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 4457999988754 3333333 37899999999754432 2359999887654
No 85
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=85.33 E-value=0.19 Score=42.92 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccccc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNI 313 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I 313 (325)
+++..|.+|-.. |+.+.-=.|...||..|+++-+... =.||.|+..-
T Consensus 2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 356789999754 4422222377999999998766542 2599998654
No 86
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.98 E-value=0.47 Score=34.39 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=31.0
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHH---------hcCCCCccccccccC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWL---------YINATCPLCKYNILK 315 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL---------~~~~tCPlCR~~I~~ 315 (325)
..-|||-..+.++.-+.--.|...||..|+.-=- ...-.||.|+..-.+
T Consensus 16 ~~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 3445999887644322222488999999994211 245679999765433
No 87
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=84.57 E-value=0.33 Score=32.63 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=29.6
Q ss_pred ccccccccccCCCceEEe--CcCCccchHHHHHHH----hcCCCCcccc
Q 020491 268 ECCICLSAYDDGVELREL--PCGHHFHCACVDKWL----YINATCPLCK 310 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~L--PC~H~FH~~CI~~WL----~~~~tCPlCR 310 (325)
.|++|...|.+++....- .|..-||..|+.-=- ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 589999998766544443 377899999985321 2456799885
No 88
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.45 E-value=0.82 Score=34.04 Aligned_cols=33 Identities=24% Similarity=0.671 Sum_probs=24.3
Q ss_pred CCCCcccccccccccCCCceEEeC---cCCccchHHHHHH
Q 020491 263 SNEDAECCICLSAYDDGVELRELP---CGHHFHCACVDKW 299 (325)
Q Consensus 263 ~~ed~~C~ICL~~y~~~~~lr~LP---C~H~FH~~CI~~W 299 (325)
...|..|.|| ..|..++ .+| |+-.||..|+.+=
T Consensus 12 ~~~D~~C~VC-~~~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcc-ccccccc---eeccccccccccHhhcccc
Confidence 3467899999 4445453 355 6799999999985
No 89
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.14 E-value=0.53 Score=35.49 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=32.5
Q ss_pred CCCCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCcccccc
Q 020491 262 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYN 312 (325)
Q Consensus 262 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~ 312 (325)
...++..|.+|-.. ++.+.--.|.-.||..|+++=+... -.||.|+..
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34566889999865 4333222377899999997755432 259999754
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=83.84 E-value=0.23 Score=34.70 Aligned_cols=48 Identities=27% Similarity=0.457 Sum_probs=31.3
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~ 315 (325)
++..|.+|-+. ++.+.-=.|...||..|++.=+... =.||.|+....+
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 45679999753 3322222377899999998654432 249999876544
No 91
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.58 E-value=0.16 Score=34.82 Aligned_cols=45 Identities=27% Similarity=0.562 Sum_probs=29.7
Q ss_pred CCCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccc
Q 020491 264 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKY 311 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~ 311 (325)
.++..|.+|-.. ++.+.--.|...||..|+++=+... =.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999864 3332222378999999998655432 24888854
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.63 E-value=0.42 Score=37.23 Aligned_cols=46 Identities=33% Similarity=0.620 Sum_probs=30.0
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhc----CCCCcccc
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----NATCPLCK 310 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~----~~tCPlCR 310 (325)
+++.|.||.+.-+..+.+.--.|...||..|++..+.. +-.||-|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 56789999877322222333348899999999887642 23466654
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.42 E-value=0.15 Score=35.43 Aligned_cols=48 Identities=29% Similarity=0.596 Sum_probs=32.1
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~ 315 (325)
++..|.+|-.. ++.+.-=.|...||..|+++=+... =.||.|+....+
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 45789999864 4332222378999999999655432 249999776544
No 94
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.25 E-value=1.8 Score=31.54 Aligned_cols=47 Identities=26% Similarity=0.463 Sum_probs=31.3
Q ss_pred cccccccccccCCCceEEeC-cCCccchHHHHHHHh-----cCCCCccccccc
Q 020491 267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-----INATCPLCKYNI 313 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~-----~~~tCPlCR~~I 313 (325)
..-|||-..++++.....-- |...||..|+.-=-. ..-.||.|+..-
T Consensus 12 ~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34559999886554444443 889999999952211 235699998654
No 95
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.02 E-value=0.39 Score=34.50 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCcccccccccccCCCceEEeC-cCCccchHHHHHHH----hcCCCCccccccc
Q 020491 265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWL----YINATCPLCKYNI 313 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL----~~~~tCPlCR~~I 313 (325)
+...| ||-..+.+++....-- |..-||..|+.-=- ..+-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34567 8988876665444443 88899999986421 1235699997643
No 96
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.82 E-value=0.22 Score=37.80 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=31.9
Q ss_pred CCCcccccccccccCCCceEEe-CcCCccchHHHHHHHhcC----CCCcccccc
Q 020491 264 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYIN----ATCPLCKYN 312 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~----~tCPlCR~~ 312 (325)
.++..|.||-..-.. +.+..- .|...||..|+++=+... =.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 456789999877433 233333 388999999998534322 249999764
No 97
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=77.76 E-value=0.85 Score=33.29 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=28.8
Q ss_pred cccccccccccCCCceEEe--CcCCccchHHHHHHH---------hcCCCCcccccccc
Q 020491 267 AECCICLSAYDDGVELREL--PCGHHFHCACVDKWL---------YINATCPLCKYNIL 314 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CI~~WL---------~~~~tCPlCR~~I~ 314 (325)
..| ||-....++.-+.-= -|...||..|+.-=- ..+-.||.|+..-.
T Consensus 17 ~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 17 VRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred EEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 445 898874444222222 488999999995311 12456999976543
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=77.32 E-value=0.63 Score=39.04 Aligned_cols=47 Identities=23% Similarity=0.502 Sum_probs=31.8
Q ss_pred CCcccccccccccCCCceEEeC-cCCccchHHHHHHH-----hcCCCCcccccc
Q 020491 265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWL-----YINATCPLCKYN 312 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL-----~~~~tCPlCR~~ 312 (325)
++..| +|-..+.++......- |...||..|+.--- ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34567 9999887555444443 88999999995221 124569999753
No 99
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.82 E-value=0.43 Score=34.97 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=27.8
Q ss_pred cccccccccccCCCceEEe-CcCCccchHHHHHHHhc-----CCCCccccc
Q 020491 267 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYI-----NATCPLCKY 311 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~-----~~tCPlCR~ 311 (325)
..|.||...= +++.+..- .|...||..|+++=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3788998652 23333333 37899999999854432 124999865
No 100
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=76.72 E-value=0.39 Score=41.71 Aligned_cols=45 Identities=24% Similarity=0.499 Sum_probs=30.7
Q ss_pred CCcccccccccccCCCceEEeC-cCCccchHHHHHHHhcC----CCCccccccc
Q 020491 265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN----ATCPLCKYNI 313 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~----~tCPlCR~~I 313 (325)
++..|.+|-.. | .+.... |...||..|+++-+... =.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999743 3 333333 77999999998766532 2599998654
No 101
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=76.19 E-value=0.56 Score=33.96 Aligned_cols=47 Identities=28% Similarity=0.468 Sum_probs=31.5
Q ss_pred cccccccccccCCCceEEeC-cCCccchHHHHHHHh-----cCCCCccccccc
Q 020491 267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-----INATCPLCKYNI 313 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~-----~~~tCPlCR~~I 313 (325)
..-+||-..|.++.....-- |.--||..|+.---. ..-.||.|+..-
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 56679998876554444443 889999999953211 234699997653
No 102
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.18 E-value=2 Score=32.41 Aligned_cols=47 Identities=28% Similarity=0.557 Sum_probs=27.5
Q ss_pred CCcccccccccccCCCceEEeC--cC-CccchHHHHHHHhc----CCCCcccccccc
Q 020491 265 EDAECCICLSAYDDGVELRELP--CG-HHFHCACVDKWLYI----NATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LP--C~-H~FH~~CI~~WL~~----~~tCPlCR~~I~ 314 (325)
++...|||-.... ++-+.-=. |. ..||..|+. |.. +-.||.|+..-.
T Consensus 34 ~e~~yCiC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCSTTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEEECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 3445559988653 32111112 43 579999997 433 235999976543
No 103
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=74.75 E-value=1.4 Score=30.78 Aligned_cols=50 Identities=22% Similarity=0.542 Sum_probs=33.1
Q ss_pred CCCcccccccccccC-CCceEEeC-cCCccchHHHHHHHh-------cCCCCccccccc
Q 020491 264 NEDAECCICLSAYDD-GVELRELP-CGHHFHCACVDKWLY-------INATCPLCKYNI 313 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~-~~~lr~LP-C~H~FH~~CI~~WL~-------~~~tCPlCR~~I 313 (325)
.++..|.+|.....+ ++.+..-. |+-.||..|++.=+. ..=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456789999987543 23333333 889999999886432 123599996543
No 104
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=74.64 E-value=0.29 Score=34.82 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=26.8
Q ss_pred CcccccccccccCCCceEEeC---cCCccchHHHHHH---Hh-----cCCCCccccc
Q 020491 266 DAECCICLSAYDDGVELRELP---CGHHFHCACVDKW---LY-----INATCPLCKY 311 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LP---C~H~FH~~CI~~W---L~-----~~~tCPlCR~ 311 (325)
...-+||-....++. ....- |+..||..|+.-= .. .+-.||.||.
T Consensus 9 ~~v~C~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRCICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECCTTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEeECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344558976655553 33332 7789999998310 00 1345999974
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=73.82 E-value=2.1 Score=30.63 Aligned_cols=42 Identities=31% Similarity=0.653 Sum_probs=26.1
Q ss_pred cccccccccccCCCceEEeC-----cC-CccchHHHHHHHhcC----CCCcccccccc
Q 020491 267 AECCICLSAYDDGVELRELP-----CG-HHFHCACVDKWLYIN----ATCPLCKYNIL 314 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP-----C~-H~FH~~CI~~WL~~~----~tCPlCR~~I~ 314 (325)
...+||-.... ++ .+- |. ..||..|+. |... -.||.|+..-.
T Consensus 16 ~~~C~C~~~~~-g~---MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 16 PTYCLCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCSTTCCCSC-SS---EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCEEECCCCCC-CC---EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 34448987643 32 333 44 589999997 4432 35999976543
No 106
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=72.64 E-value=2.7 Score=32.67 Aligned_cols=47 Identities=26% Similarity=0.473 Sum_probs=30.6
Q ss_pred CCCcccccccccccCCCceEEe---CcCCccchHHHHHHHhcC----CCCccccccccCC
Q 020491 264 NEDAECCICLSAYDDGVELREL---PCGHHFHCACVDKWLYIN----ATCPLCKYNILKS 316 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~L---PC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~~ 316 (325)
.++..|.+|-+ +.++..- .|...||..|+. |... =.||-|+-.+-.+
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 45578999973 3333333 377899999998 5432 2499887666544
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.46 E-value=1.1 Score=35.09 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=29.3
Q ss_pred cccccccccccCCCceEEeC-cCCccchHHHHHHHhcC----CCCccccc
Q 020491 267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN----ATCPLCKY 311 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~----~tCPlCR~ 311 (325)
..|.+|-..-++++.+..-- |...||..|+++=|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 36888876533333343333 88999999998655432 25999974
No 108
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=72.43 E-value=0.52 Score=33.83 Aligned_cols=43 Identities=28% Similarity=0.528 Sum_probs=25.9
Q ss_pred ccccccccccCCCceEEeC-cCCccchHHHHHHHhc-----CCCCccccc
Q 020491 268 ECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI-----NATCPLCKY 311 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~-----~~tCPlCR~ 311 (325)
.|.+|...= +++.+..-- |...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776542 223333322 7799999999854432 125999875
No 109
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.54 E-value=0.42 Score=35.89 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=36.1
Q ss_pred CCcccccccccccCC-CceEEe-CcCCccchHHHHHHHhc--------CCCCccccccccCCCCc
Q 020491 265 EDAECCICLSAYDDG-VELREL-PCGHHFHCACVDKWLYI--------NATCPLCKYNILKSSSN 319 (325)
Q Consensus 265 ed~~C~ICL~~y~~~-~~lr~L-PC~H~FH~~CI~~WL~~--------~~tCPlCR~~I~~~~~~ 319 (325)
++..|.+|...-..+ +.+..- .|+..||..|++.=+.. .=.||.|+....+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~ 79 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccc
Confidence 467899999764432 333333 38899999999875531 23599997766554433
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.28 E-value=5.1 Score=31.04 Aligned_cols=32 Identities=28% Similarity=0.578 Sum_probs=22.3
Q ss_pred Cccccccccccc-----CCCceEEe-CcCCccchHHHH
Q 020491 266 DAECCICLSAYD-----DGVELREL-PCGHHFHCACVD 297 (325)
Q Consensus 266 d~~C~ICL~~y~-----~~~~lr~L-PC~H~FH~~CI~ 297 (325)
...|.+|+..=+ +++++..- .|+..||..|++
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 468999997631 23344444 388999999996
No 111
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=69.26 E-value=3.9 Score=29.26 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=31.6
Q ss_pred CCCCcccccccccc-cCCCceEEeC-cCCccchHHHHHHHh--cCCCCcccccc
Q 020491 263 SNEDAECCICLSAY-DDGVELRELP-CGHHFHCACVDKWLY--INATCPLCKYN 312 (325)
Q Consensus 263 ~~ed~~C~ICL~~y-~~~~~lr~LP-C~H~FH~~CI~~WL~--~~~tCPlCR~~ 312 (325)
..++..|.||.+.- .+++.+..-- |+-.||..|+..=.. ..=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34568899998764 2333443333 889999999975221 11248888653
No 112
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=67.75 E-value=3.2 Score=44.02 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=44.3
Q ss_pred CCCCCcccccccccccCCCceEEeCcC-CccchHHHHHHHhcCCCCccccccccC
Q 020491 262 LSNEDAECCICLSAYDDGVELRELPCG-HHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 262 ~~~ed~~C~ICL~~y~~~~~lr~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
..++.-.|+|=++-+.|+ ..+|-| |.|-..+|.+||..+.+||.=|.++..
T Consensus 887 ~iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 345677899999999998 789987 589999999999999999998888764
No 113
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=67.34 E-value=1.7 Score=33.10 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=28.0
Q ss_pred ccccccccccCCCceEEeCcCCccchHHHHHHHhc---CCCCccccc
Q 020491 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLCKY 311 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~---~~tCPlCR~ 311 (325)
.-|||-...+++.-+.-=.|.-.||..|+..=... .-.||.|+.
T Consensus 29 vrCiC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCCTTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEeECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 33499877665543322238899999999652221 236999974
No 114
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=66.40 E-value=0.39 Score=37.76 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=29.9
Q ss_pred ccccccccccCCCceEEeCcCCccchHHHHHHHhcC----CCCccccccccC
Q 020491 268 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK 315 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~ 315 (325)
.|.||-..-.+++.+.--.|...||..|+++=|... =.||.|+....+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 577887653333322222378999999998544332 249999776544
No 115
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=64.60 E-value=1.3 Score=39.06 Aligned_cols=44 Identities=27% Similarity=0.498 Sum_probs=25.0
Q ss_pred cccccccccccCCCceEEe-CcCCccchHHHHHHHhcC-----CCCccccc
Q 020491 267 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYIN-----ATCPLCKY 311 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~-----~tCPlCR~ 311 (325)
..|.+|-..= +++.+... .|...||..|+++=|... =.||.|+.
T Consensus 175 c~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3688887652 23333333 388999999999544321 24999965
No 116
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=63.16 E-value=1.3 Score=30.61 Aligned_cols=41 Identities=37% Similarity=0.746 Sum_probs=24.8
Q ss_pred cccccccccccCCCceEEe-C--cC-CccchHHHHHHHhcC----CCCccccc
Q 020491 267 AECCICLSAYDDGVELREL-P--CG-HHFHCACVDKWLYIN----ATCPLCKY 311 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L-P--C~-H~FH~~CI~~WL~~~----~tCPlCR~ 311 (325)
...+||-... ++ ....- . |. ..||..|+. +... -.||.|+.
T Consensus 9 ~~yC~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYCLCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEETTTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEEECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4455998764 23 22222 2 44 589999997 4332 35999964
No 117
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=61.21 E-value=1.6 Score=31.09 Aligned_cols=45 Identities=18% Similarity=0.447 Sum_probs=28.0
Q ss_pred CCcccccccccccCCCceEEe-CcCCccchHHHHHHHh---cCCCCccccc
Q 020491 265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLY---INATCPLCKY 311 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~---~~~tCPlCR~ 311 (325)
+...| ||-..+.+ +....- .|...||..|+.-=-. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~-~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAG-RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTT-CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCC-CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 33456 99887663 323333 3889999999963211 2346888864
No 118
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=60.31 E-value=1.5 Score=42.61 Aligned_cols=48 Identities=27% Similarity=0.408 Sum_probs=32.8
Q ss_pred cccccccccccCCCceEEeC-cCCccchHHHHHHHh-----cCCCCcccccccc
Q 020491 267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-----INATCPLCKYNIL 314 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~-----~~~tCPlCR~~I~ 314 (325)
...|||-..+.++......- |.--||..|+.-=-. .+-.||.|+..-.
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 56889999886555554544 889999999942111 2357999976543
No 119
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=59.41 E-value=1.5 Score=30.24 Aligned_cols=41 Identities=34% Similarity=0.740 Sum_probs=24.6
Q ss_pred cccccccccccCCCceEEe-C--cC-CccchHHHHHHHhcC----CCCccccc
Q 020491 267 AECCICLSAYDDGVELREL-P--CG-HHFHCACVDKWLYIN----ATCPLCKY 311 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L-P--C~-H~FH~~CI~~WL~~~----~tCPlCR~ 311 (325)
...+||-.... + .+..- . |. ..||..|+. |... -.||.|+.
T Consensus 10 ~~~C~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYCLCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEETTTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEEECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 45559987642 3 22221 2 33 579999997 4432 35999864
No 120
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=58.09 E-value=1.3 Score=32.32 Aligned_cols=44 Identities=27% Similarity=0.511 Sum_probs=25.4
Q ss_pred ccccccccccCCCceEEe-CcCCccchHHHHHHHhcC-----CCCcccccc
Q 020491 268 ECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYIN-----ATCPLCKYN 312 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~~-----~tCPlCR~~ 312 (325)
.|.+|-..= +++.+..- .|...||..|+++=|... =.||.|+.+
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 466665542 22233222 277999999999655431 259999763
No 121
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=57.89 E-value=7.7 Score=31.65 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=30.2
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHh-----------cCCCCcccccc
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----------INATCPLCKYN 312 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~-----------~~~tCPlCR~~ 312 (325)
.+..|.+|-+. |+.+--=.|...||..||++=+. ..=.||.|+..
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 45789999765 44322224779999999997653 12359999743
No 122
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=56.31 E-value=2.3 Score=41.82 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=31.9
Q ss_pred CCcccccccccccCCCceEEeC-cCCccchHHHHHHHh-----cCCCCcccccc
Q 020491 265 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-----INATCPLCKYN 312 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~-----~~~tCPlCR~~ 312 (325)
.+..-|||-..++++......- |.--||..|+.-=-. .+-.||.|+..
T Consensus 35 ~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3456679998886555444444 889999999943211 12469999754
No 123
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=53.78 E-value=5.1 Score=31.21 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=22.0
Q ss_pred ccccccccccc------CCCceEEe-CcCCccchHHHHHH
Q 020491 267 AECCICLSAYD------DGVELREL-PCGHHFHCACVDKW 299 (325)
Q Consensus 267 ~~C~ICL~~y~------~~~~lr~L-PC~H~FH~~CI~~W 299 (325)
..|.+|+..-. +++++..- .|...||..|++..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46899987542 12333333 48899999999865
No 124
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=47.54 E-value=3.3 Score=28.81 Aligned_cols=41 Identities=32% Similarity=0.712 Sum_probs=24.7
Q ss_pred cccccccccccCCCceEEe-C--cC-CccchHHHHHHHhc----CCCCccccc
Q 020491 267 AECCICLSAYDDGVELREL-P--CG-HHFHCACVDKWLYI----NATCPLCKY 311 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L-P--C~-H~FH~~CI~~WL~~----~~tCPlCR~ 311 (325)
...+||-... ++ ....- . |. ..||..|+. |.. +-.||.|+.
T Consensus 11 ~~yC~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYCLCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEETTTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEEECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4455998763 23 22222 2 33 789999997 332 235999965
No 125
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.17 E-value=2.3 Score=26.10 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=11.7
Q ss_pred CCcccccccccccCCCc
Q 020491 265 EDAECCICLSAYDDGVE 281 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~ 281 (325)
+.-.|+||+.++...+.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 34678888888776543
No 126
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=45.65 E-value=4.1 Score=31.39 Aligned_cols=44 Identities=18% Similarity=0.467 Sum_probs=27.2
Q ss_pred ccccccccccCCCceEEe-CcCCccchHHHHHHHhc----CCCCcccccc
Q 020491 268 ECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYI----NATCPLCKYN 312 (325)
Q Consensus 268 ~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~~----~~tCPlCR~~ 312 (325)
.|.+|-..-++ +.+..- -|...||..|+++=+.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 56677655322 233333 37799999999864443 2359999654
No 127
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=43.89 E-value=15 Score=34.70 Aligned_cols=46 Identities=20% Similarity=0.427 Sum_probs=30.6
Q ss_pred cccccccccccCCCceEEeCcCCc--cchHHHHHHHhc--CCCCcccccccc
Q 020491 267 AECCICLSAYDDGVELRELPCGHH--FHCACVDKWLYI--NATCPLCKYNIL 314 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~--FH~~CI~~WL~~--~~tCPlCR~~I~ 314 (325)
-.|+|=...++. .+|-..|.|. |-.+=+-+...+ .-.||+|...+.
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 478877777554 4688889997 665444333333 346999988774
No 128
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=43.13 E-value=74 Score=23.74 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=34.3
Q ss_pred CCccccccccccc---CCCceEEe-CcCCccchHHHHHHHh-cCCCCcccccccc
Q 020491 265 EDAECCICLSAYD---DGVELREL-PCGHHFHCACVDKWLY-INATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~---~~~~lr~L-PC~H~FH~~CI~~WL~-~~~tCPlCR~~I~ 314 (325)
....|.||=++.- +++.-... -|+---++.|.+-=.+ -++.||-|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4478999988864 33321111 2666789999876544 5789999999886
No 129
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=42.54 E-value=16 Score=34.37 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=31.6
Q ss_pred cccccccccccCCCceEEeCcCCc--cchHHHHHHHhcC--CCCccccccccC
Q 020491 267 AECCICLSAYDDGVELRELPCGHH--FHCACVDKWLYIN--ATCPLCKYNILK 315 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~--FH~~CI~~WL~~~--~tCPlCR~~I~~ 315 (325)
-.|+|=...++. .+|-..|.|. |-.+=.-+....+ -.||+|.+.+..
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 468887777654 4688889997 6655444433333 469999988753
No 130
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=42.35 E-value=22 Score=28.43 Aligned_cols=44 Identities=27% Similarity=0.522 Sum_probs=28.6
Q ss_pred CCcccccccccccCCCceEEe-CcCCccchHHHHHHH------hc-----CCCCcccccc
Q 020491 265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWL------YI-----NATCPLCKYN 312 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL------~~-----~~tCPlCR~~ 312 (325)
.+..|.+|-+. + ++.-- .|-..||.+||++=+ +. .=.|+.|+..
T Consensus 56 ~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 45679999754 3 22222 266999999999742 22 1369999654
No 131
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=41.13 E-value=15 Score=25.85 Aligned_cols=31 Identities=29% Similarity=0.680 Sum_probs=24.6
Q ss_pred CCCcccccccccccCCCceEEeCc-CCccchHHHHH
Q 020491 264 NEDAECCICLSAYDDGVELRELPC-GHHFHCACVDK 298 (325)
Q Consensus 264 ~ed~~C~ICL~~y~~~~~lr~LPC-~H~FH~~CI~~ 298 (325)
++..-|+||.++ ..+|-+.| +-.|+..|..+
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHH
Confidence 455789999887 56888999 58899888655
No 132
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.99 E-value=12 Score=25.79 Aligned_cols=41 Identities=24% Similarity=0.510 Sum_probs=28.5
Q ss_pred cccccccccccCCCceEEeC-cCCccchHHHHHHHh-cCCCCccc
Q 020491 267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-INATCPLC 309 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~-~~~tCPlC 309 (325)
..|--|...+.+... ..-| |+++|+.+| |.... .=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~-y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHV-YVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEE-ECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCcc-EECCccCcCcccch-hHHHHhhccCCcCC
Confidence 359999999864422 2345 999999999 55543 33679988
No 133
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=37.56 E-value=19 Score=23.31 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhhh
Q 020491 179 FVVFCVALACIIGI 192 (325)
Q Consensus 179 fvv~~val~~li~i 192 (325)
|+-||.+++|++.|
T Consensus 32 fvnfclilicllli 45 (52)
T 1fjk_A 32 FINFCLILIFLLLI 45 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 134
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.29 E-value=27 Score=24.29 Aligned_cols=40 Identities=18% Similarity=0.448 Sum_probs=30.1
Q ss_pred CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
...|.-|-..+.+++.+. .-+..||.+|. +|-.|+..+..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCC
Confidence 367999999988776543 45788998873 58888888764
No 135
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.42 E-value=6.4 Score=30.42 Aligned_cols=26 Identities=31% Similarity=0.696 Sum_probs=16.7
Q ss_pred eCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 285 LPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 285 LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
..||+.| .+=+.....||.|++.=.+
T Consensus 71 ~~CG~~F-----~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 71 RKCGFVF-----KAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTTCCBC-----CCCSSCCSSCSSSCCCCBC
T ss_pred hhCcCee-----cccCCCCCCCcCCCCCccC
Confidence 3488888 1222445789999886544
No 136
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.37 E-value=30 Score=24.33 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
....|.-|-....+. ....-+..||.+|. +|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 346899999888753 23446789999884 5888887764
No 137
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.49 E-value=37 Score=24.14 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=30.0
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
....|.-|-..+.+.+.+. .-+..||.+|. .|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 3468999999887776554 35778998883 477777776543
No 138
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=34.33 E-value=17 Score=25.40 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=8.1
Q ss_pred CCcccccccccccCC
Q 020491 265 EDAECCICLSAYDDG 279 (325)
Q Consensus 265 ed~~C~ICL~~y~~~ 279 (325)
+--.|..|-..+.++
T Consensus 26 ~CF~C~~C~~~L~~~ 40 (76)
T 1iml_A 26 PCLKCEKCGKTLTSG 40 (76)
T ss_dssp TTCBCTTTCCBCCTT
T ss_pred CCCCccccCccCCCC
Confidence 345566666555544
No 139
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=33.70 E-value=10 Score=26.92 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=15.2
Q ss_pred HHHHHhcCCCCccccccccCC
Q 020491 296 VDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 296 I~~WL~~~~tCPlCR~~I~~~ 316 (325)
+|+||...-.||.||.++.-.
T Consensus 1 md~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEEC
T ss_pred CChHHHhheeCCCCCCcCeEe
Confidence 356777788999999988643
No 140
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=31.86 E-value=4.6 Score=30.35 Aligned_cols=41 Identities=27% Similarity=0.497 Sum_probs=24.0
Q ss_pred cccccccccccCCCceEEe-CcC---CccchHHHHHHHhc----CCCCcc-ccc
Q 020491 267 AECCICLSAYDDGVELREL-PCG---HHFHCACVDKWLYI----NATCPL-CKY 311 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L-PC~---H~FH~~CI~~WL~~----~~tCPl-CR~ 311 (325)
...|||-.... ++ ...- .|+ ..||..||. |.. +-.||. |+.
T Consensus 26 ~~yCiC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYCFCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCSTTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEEEeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34449987532 32 2222 244 579999995 332 235999 974
No 141
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=31.39 E-value=8.6 Score=27.21 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=16.1
Q ss_pred HHHHHhcCCCCccccccccCC
Q 020491 296 VDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 296 I~~WL~~~~tCPlCR~~I~~~ 316 (325)
+++||...-.||.||.++.-.
T Consensus 3 md~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEEE
T ss_pred CCHHHHHHhCCCCCCCcCeEe
Confidence 356777788899999987543
No 142
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.56 E-value=39 Score=23.91 Aligned_cols=40 Identities=20% Similarity=0.534 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
....|.-|-..+.+++.+.. -+..||.+| -.|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 34689999999887775544 467899887 35888888775
No 143
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.60 E-value=17 Score=24.91 Aligned_cols=19 Identities=32% Similarity=0.838 Sum_probs=13.3
Q ss_pred HHhc-CCCCccccccccCCC
Q 020491 299 WLYI-NATCPLCKYNILKSS 317 (325)
Q Consensus 299 WL~~-~~tCPlCR~~I~~~~ 317 (325)
|++. ...||-|+..|.++.
T Consensus 1 wi~~~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCC
T ss_pred CccccceECcCCCCeeEeCC
Confidence 4443 367999999887654
No 144
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.19 E-value=12 Score=21.84 Aligned_cols=13 Identities=31% Similarity=0.904 Sum_probs=8.9
Q ss_pred CCCCccccccccC
Q 020491 303 NATCPLCKYNILK 315 (325)
Q Consensus 303 ~~tCPlCR~~I~~ 315 (325)
+.+||+||...+.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3468999876643
No 145
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.00 E-value=24 Score=28.29 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCccccccccccc--CCCceEEeCcCCccchHHHH
Q 020491 265 EDAECCICLSAYD--DGVELRELPCGHHFHCACVD 297 (325)
Q Consensus 265 ed~~C~ICL~~y~--~~~~lr~LPC~H~FH~~CI~ 297 (325)
++..|.+|...|. ++....-.-|.|.++..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4478999999993 23333333499999888854
No 146
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.32 E-value=40 Score=23.00 Aligned_cols=39 Identities=18% Similarity=0.529 Sum_probs=27.1
Q ss_pred cccccccccccC--CCceEEeCcCCccchHHHHHHHhcCCCCcccccccc
Q 020491 267 AECCICLSAYDD--GVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 267 ~~C~ICL~~y~~--~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
..|.-|-..+.+ ++++ ...-+..||.+|. +|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCC
Confidence 578888888875 3332 2336788998884 5888887775
No 147
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.00 E-value=1.2e+02 Score=21.66 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=27.1
Q ss_pred CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
...|.-|-..+.+.+.+ ..-+..||.+|. .|=.|+..+...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCCC
Confidence 35788888887766543 456678888773 366676666543
No 148
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=26.50 E-value=83 Score=22.64 Aligned_cols=35 Identities=17% Similarity=0.391 Sum_probs=25.2
Q ss_pred CCcccccccccccCCCceEEe-CcCCccchHHHHHH
Q 020491 265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKW 299 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~W 299 (325)
+...|.+|-..|.--..-.-- .|+++|+.+|-...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 346899999999765422223 38999999997664
No 149
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.31 E-value=34 Score=22.07 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=15.1
Q ss_pred CCCCchhhHHHHHhhhHHHHHhhhheeeeeccc
Q 020491 55 RPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSR 87 (325)
Q Consensus 55 ~p~~PL~~Wi~gY~~~c~~~~~~~~~~~~~r~~ 87 (325)
.+++|.-+=-++.++..++.+.+.+|-|.||++
T Consensus 7 ~s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 7 GPKIPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp CSCSSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCcceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 355554332333334444445555555555444
No 150
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.59 E-value=1e+02 Score=21.88 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=29.4
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
....|.-|-..+.+ +. ...-+..||.+|. .|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccCC--------EecCCCCCCCCC
Confidence 34689999988875 22 3346789999883 588888887643
No 151
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=23.85 E-value=49 Score=23.25 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=23.2
Q ss_pred CcccccccccccCCCceEEe-CcCCccchHHHHH
Q 020491 266 DAECCICLSAYDDGVELREL-PCGHHFHCACVDK 298 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~ 298 (325)
+..|.+|-..|.--..-.-- .||++|+.+|-..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 35899999998754322222 3899999999654
No 152
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.77 E-value=9 Score=26.04 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=13.9
Q ss_pred HHHHhcCCCCccccccccC
Q 020491 297 DKWLYINATCPLCKYNILK 315 (325)
Q Consensus 297 ~~WL~~~~tCPlCR~~I~~ 315 (325)
++||..--.||.||.++..
T Consensus 4 d~~lL~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLEE 22 (56)
T ss_dssp CCSCTTSCCCSSSCSCEEE
T ss_pred CHHHHhheeCCCCCCccee
Confidence 4566666789999998653
No 153
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.52 E-value=25 Score=26.74 Aligned_cols=39 Identities=23% Similarity=0.534 Sum_probs=24.3
Q ss_pred cccccccccccCCCceEEeC-cCCccchHHHHHHHhcCCCCcccccccc
Q 020491 267 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 314 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~ 314 (325)
..|++|-.+++-......-+ |+-. ++..+.||-|.+++.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~---------f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF---------IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE---------EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEEECccccch---------hhccccCcchhhHHH
Confidence 68999988865432222121 3332 456778999988774
No 154
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=23.39 E-value=31 Score=26.26 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=10.6
Q ss_pred cchHHHHHHHhc
Q 020491 291 FHCACVDKWLYI 302 (325)
Q Consensus 291 FH~~CI~~WL~~ 302 (325)
||.+|+.+|++-
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 155
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.02 E-value=32 Score=26.15 Aligned_cols=11 Identities=45% Similarity=1.132 Sum_probs=10.3
Q ss_pred cchHHHHHHHh
Q 020491 291 FHCACVDKWLY 301 (325)
Q Consensus 291 FH~~CI~~WL~ 301 (325)
||..|+.+|++
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 156
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.65 E-value=27 Score=28.53 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=16.3
Q ss_pred eCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 285 LPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 285 LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
..|+|.|-.. .....||.|.+++.+.
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBEEEC
T ss_pred CCCCCcccCC------CCCCcCCCCCCcceeC
Confidence 4477777532 2234799999886543
No 157
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=22.52 E-value=66 Score=18.62 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhhh
Q 020491 179 FVVFCVALACIIGI 192 (325)
Q Consensus 179 fvv~~val~~li~i 192 (325)
|+-||..++|++.+
T Consensus 11 fvNfcLilICllLi 24 (30)
T 1yod_A 11 YINRCLREICQELK 24 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666665544
No 158
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=22.41 E-value=53 Score=24.12 Aligned_cols=52 Identities=15% Similarity=0.342 Sum_probs=33.2
Q ss_pred CCcccccccccccCCCceEEe-CcCCccchHHHHHHHh-------cCCCCccccccccCC
Q 020491 265 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLY-------INATCPLCKYNILKS 316 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL~-------~~~tCPlCR~~I~~~ 316 (325)
+...|.+|-..|.--..-.-- .|+++|+.+|-..... ....|-.|-..+...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 446899999998855322222 4899999999765432 123477776655443
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.22 E-value=38 Score=29.07 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=24.5
Q ss_pred CcccccccccccCCCceEEe-CcCCccchHHHHHH
Q 020491 266 DAECCICLSAYDDGVELREL-PCGHHFHCACVDKW 299 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~W 299 (325)
+..|.+|-..|.--..-.-. .||++|+..|-...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 57999999998754322233 39999999996653
No 160
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.04 E-value=50 Score=21.25 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=14.1
Q ss_pred CCCCchhhHHHHHhhhHHHHHhhhheeeeeccc
Q 020491 55 RPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSR 87 (325)
Q Consensus 55 ~p~~PL~~Wi~gY~~~c~~~~~~~~~~~~~r~~ 87 (325)
.|++|.-+=-++.++..++.+.+.+|-|.||++
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 455554222222233333444455555555443
No 161
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.04 E-value=1.2e+02 Score=21.50 Aligned_cols=40 Identities=23% Similarity=0.466 Sum_probs=28.3
Q ss_pred CCcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccC
Q 020491 265 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 315 (325)
Q Consensus 265 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 315 (325)
....|.-|-..+. ++.+ ..-+..||.+|. .|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEE--EECCccccccCC--------ccCCCCCCCCC
Confidence 3468999998885 3333 345788998874 58888887764
No 162
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=21.79 E-value=30 Score=22.65 Aligned_cols=44 Identities=18% Similarity=0.465 Sum_probs=27.0
Q ss_pred cccccccccccCCCceEEe-CcCCccchHHHHHHH---hcCCCCccccc
Q 020491 267 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWL---YINATCPLCKY 311 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~WL---~~~~tCPlCR~ 311 (325)
..=+||-..+.++ ....- .|+.-||..|+.-=- ..+-.||.|+.
T Consensus 4 ~~~C~C~~~~~~~-~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTCFCMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CBCSTTCCBCTTC-CEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred CeEEEeCCcCCCC-CEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 3446887776533 33333 388999999996322 12346888864
No 163
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.74 E-value=45 Score=22.61 Aligned_cols=39 Identities=18% Similarity=0.410 Sum_probs=25.3
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
..|.-|-....+ +.+ ..-+..||.+|. +|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVI--KAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-CCE--EETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEecc-eEE--EECcccccccCC--------EeCCCCCcCCCC
Confidence 568888877763 322 234677888774 577787776543
No 164
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=21.72 E-value=45 Score=22.47 Aligned_cols=41 Identities=20% Similarity=0.531 Sum_probs=29.8
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
..|.-|-..+..++.+.. .=+..||.+|. .|-.|+..+..+
T Consensus 12 ~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp CBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred ccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 579999998887765432 34677998885 588888877654
No 165
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.70 E-value=86 Score=21.14 Aligned_cols=38 Identities=18% Similarity=0.434 Sum_probs=20.7
Q ss_pred cccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccc
Q 020491 267 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 313 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 313 (325)
..|.-|-..+..++.. ...=+..||.+|. .|-.|+..+
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L 43 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAG-VVALDRVFHVGCF--------VCSTCRAQL 43 (72)
T ss_dssp CCCSSSCSCCCSSSCC-EECSSSEECTTTC--------BCSSSCCBC
T ss_pred CCCccCCCccCCCceE-EEECCCeEcccCC--------cccccCCcC
Confidence 4577776665543321 2223566776662 466666666
No 166
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.20 E-value=87 Score=22.51 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=23.2
Q ss_pred cccccccccccCCCceEEe-CcCCccchHHHHHH
Q 020491 267 AECCICLSAYDDGVELREL-PCGHHFHCACVDKW 299 (325)
Q Consensus 267 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CI~~W 299 (325)
..|.+|-..|.--..-.-- .|+++|+..|-..-
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 5799999999654322222 48999999996543
No 167
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.96 E-value=11 Score=26.76 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=13.6
Q ss_pred HHHHhcCCCCccccccccC
Q 020491 297 DKWLYINATCPLCKYNILK 315 (325)
Q Consensus 297 ~~WL~~~~tCPlCR~~I~~ 315 (325)
|+||..--.||.||.++.-
T Consensus 2 d~~LL~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLEY 20 (68)
T ss_dssp CCSSSCCCBCSSSCCBCEE
T ss_pred ChHHhhheECCCCCCcCeE
Confidence 3455566789999988754
No 168
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.32 E-value=26 Score=19.88 Aligned_cols=11 Identities=27% Similarity=0.902 Sum_probs=7.5
Q ss_pred CCccccccccC
Q 020491 305 TCPLCKYNILK 315 (325)
Q Consensus 305 tCPlCR~~I~~ 315 (325)
.||+|++.++-
T Consensus 8 qcpvcqq~mpa 18 (29)
T 3vhs_A 8 QCPVCQQMMPA 18 (29)
T ss_dssp ECTTTCCEEEG
T ss_pred eChHHHHhCcH
Confidence 48888776543
No 169
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.19 E-value=96 Score=21.17 Aligned_cols=42 Identities=19% Similarity=0.522 Sum_probs=28.5
Q ss_pred CcccccccccccCCCceEEeCcCCccchHHHHHHHhcCCCCccccccccCC
Q 020491 266 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 316 (325)
Q Consensus 266 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 316 (325)
...|.-|-..+..++.+.. .-+..||.+|. +|-.|+.++..+
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEeccccC--------eECCCCCCCCCC
Confidence 3679999888876554322 24678888773 577888777654
Done!