BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020492
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 211 bits (538), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 170/338 (50%), Gaps = 26/338 (7%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
+P W+LG+H R+ Y + +RE+ R +P DV DIDYMD R FT+D F
Sbjct: 286 LPSYWALGFHLSRYEYGTLDNMREVVERNRAAQLPYDVQHADIDYMDERRDFTYDSVDFK 345
Query: 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDG----YFVYDSGSKIDVWIQKADG-TPFIGEV 115
+LH NG K + ++DP I + Y YD GS + +W+ +DG TP IGEV
Sbjct: 346 GFPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEV 405
Query: 116 WPGPCVFPDYTQSKVRSWWGSLVKDFIYNGV--DGIWNDMNEPAVFKSVTKTMPESN--- 170
WPG VFPDYT WW + F +N V DGIW DMNE + F + + +N
Sbjct: 406 WPGQTVFPDYTNPNCAVWWTKEFELF-HNQVEFDGIWIDMNEVSNFVDGSVSGCSTNNLN 464
Query: 171 ----IHRGDDEIGGCQNHSY-----------YHNVYGMLMARSTYEGMKLADKDKRPFVL 215
R D C+ HN+YG MA +T E K +KR F+L
Sbjct: 465 NPPFTPRILDGYLFCKTLCMDAVQHWGKQYDIHNLYGYSMAVATAEAAKTVFPNKRSFIL 524
Query: 216 TRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLF 275
TR+ F GS ++AA W GDN + W+ L SI VL+ L G P GPDI GF + L
Sbjct: 525 TRSTFAGSGKFAAHWLGDNTATWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEELC 584
Query: 276 GRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 313
RWM +GA +PF R H D +P SFG + L +S
Sbjct: 585 RRWMQLGAFYPFSRNHNGQGYKDQDPASFGADSLLLNS 622
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 211 bits (538), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 168/338 (49%), Gaps = 26/338 (7%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
+P W+LG+H R+ Y + +RE+ R +P DV DIDYMD R FT+D F
Sbjct: 286 LPSYWALGFHLSRYEYGTLDNMREVVERNRAAQLPYDVQHADIDYMDERRDFTYDSVDFK 345
Query: 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDG----YFVYDSGSKIDVWIQKADG-TPFIGEV 115
+LH NG K + ++DP I + Y YD GS + +W+ +DG TP IGEV
Sbjct: 346 GFPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEV 405
Query: 116 WPGPCVFPDYTQSKVRSWWGSLVKDFIYNGV--DGIWNDMNEPAVFKSVTKTMPESNIHR 173
WPG VFPDYT WW + F +N V DGIW DMNE + F + + +N
Sbjct: 406 WPGQTVFPDYTNPNCAVWWTKEFELF-HNQVEFDGIWIDMNEVSNFVDGSVSGCSTNNLN 464
Query: 174 GD------------------DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVL 215
D + HN+YG MA +T E K +KR F+L
Sbjct: 465 NPPFTPRILDGYLFCKTLCMDAVQHWGKQYDIHNLYGYSMAVATAEAAKTVFPNKRSFIL 524
Query: 216 TRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLF 275
TR+ F GS ++AA W GDN + W+ L SI VL+ L G P GPDI GF + L
Sbjct: 525 TRSTFAGSGKFAAHWLGDNTATWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEELC 584
Query: 276 GRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 313
RWM +GA +PF R H D +P SFG + L +S
Sbjct: 585 RRWMQLGAFYPFSRNHNGQGYKDQDPASFGADSLLLNS 622
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 210 bits (534), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 175/326 (53%), Gaps = 31/326 (9%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
+PP W+ GY R+SY +V E+ +++G +++DI YMD ++ FT+ RFP
Sbjct: 171 LPPMWAFGYMISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSYKLFTWHPYRFP 230
Query: 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPC 120
+PK L +LH K I ++D GI+ + Y + SG + + + G F+G++WPG
Sbjct: 231 EPKKLIDELHKRNVKLITIVDHGIRVDQNYSPFLSG--MGKFCEIESGELFVGKMWPGTT 288
Query: 121 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVF------KSVTKTMPESNIHRG 174
V+PD+ + R WW L+ +++ GVDGIW DMNEP F + V ++P +
Sbjct: 289 VYPDFFREDTREWWAGLISEWLSQGVDGIWLDMNEPTDFSRAIEIRDVLSSLP---VQFR 345
Query: 175 DDEI-------------GGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFI 221
DD + G H N Y + A +T++G + + +++ F+L+RAG+
Sbjct: 346 DDRLVTTFPDNVVHYLRGKRVKHEKVRNAYPLYEAMATFKGFRTSHRNE-IFILSRAGYA 404
Query: 222 GSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG------NATPRLF 275
G QRYA WTGDN +W+ L + + +VL L +SG PF G DIGGF G + + L
Sbjct: 405 GIQRYAFIWTGDNTPSWDDLKLQLQLVLGLSISGVPFVGCDIGGFQGRNFAEIDNSMDLL 464
Query: 276 GRWMGIGAMFPFCRGHTESDAIDHEP 301
++ + FPF R H +D ID EP
Sbjct: 465 VKYYALALFFPFYRSHKATDGIDTEP 490
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 168/336 (50%), Gaps = 32/336 (9%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
+PPK++ G+ Q RW Y + + R + + +RE IP D+I+MDIDYM F+ FT +++ FP
Sbjct: 159 IPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFP 218
Query: 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPC 120
D ++ + I ++D G+K E GY VY+ G K + + ++ DG+ F+ VWPG
Sbjct: 219 DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDT 278
Query: 121 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP------------E 168
FPD + R W+G + I G++G WNDMNEPA+F S E
Sbjct: 279 HFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTE 338
Query: 169 SNIH-------------------RGDDEIGGCQ-NHSYYHNVYGMLMARSTYEGMKLADK 208
IH R + G + H HN++G M R+ E + D
Sbjct: 339 GKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDP 398
Query: 209 DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG 268
+KR + +R+ +IG RY W GDN S W H+ +++ M+ L + G ++G D+GGF
Sbjct: 399 EKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGD 458
Query: 269 NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSF 304
+ T L R++ +G P R H + E + F
Sbjct: 459 DTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQF 494
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 207 bits (527), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 176/341 (51%), Gaps = 31/341 (9%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
MP W+LG+ RW+Y S V+E+ R RE GIP D DIDYM+ + FT+D+ F
Sbjct: 314 MPAYWNLGFQLSRWNYKSLDVVKEVVRRNREAGIPFDTQVTDIDYMEDKKDFTYDQVAFN 373
Query: 61 DPKSLAADLHLNGFKAIWMLDPGI---KHEDG--YFVYDSGSKIDVWIQKADG-TPFIGE 114
DLH +G K + +LDP I + +G Y Y+ G+ VWI ++DG TP IGE
Sbjct: 374 GLPQFVQDLHDHGQKYVIILDPAISIGRRANGTTYATYERGNTQHVWINESDGSTPIIGE 433
Query: 115 VWPGPCVFPDYTQSKVRSWWGSLVKDFIYN-GVDGIWNDMNEPAVFKSVTKTMPESNIHR 173
VWPG V+PD+T WW + F DG+W DMNE + F + + N+++
Sbjct: 434 VWPGLTVYPDFTNPNCIDWWANECSIFHQEVQYDGLWIDMNEVSSF--IQGSTKGCNVNK 491
Query: 174 GD--------------------DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPF 213
+ D + H++YG MA +T + ++ +KR F
Sbjct: 492 LNYPPFTPDILDKLMYSKTICMDAVQNWGKQYDVHSLYGYSMAIATEQAVQKVFPNKRSF 551
Query: 214 VLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPR 273
+LTR+ F GS R+AA W GDN ++WE + SI+ +L+ L G P G DI GF T
Sbjct: 552 ILTRSTFAGSGRHAAHWLGDNTASWEQMEWSITGMLEFSLFGIPLVGADICGFVAETTEE 611
Query: 274 LFGRWMGIGAMFPFCRGHTESDAIDHE-PWSFGEEVLFCSS 313
L RWM +GA +PF R H SD +H+ P FG+ L S
Sbjct: 612 LCRRWMQLGAFYPFSRNH-NSDGYEHQDPAFFGQNSLLVKS 651
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 168/336 (50%), Gaps = 32/336 (9%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
+PPK++ G+ Q R+ Y + + R + + +RE IP D+I+MDIDYM F+ FT +++ FP
Sbjct: 159 IPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFP 218
Query: 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPC 120
D ++ + I ++D G+K E GY VY+ G K + + ++ DG+ F+ VWPG
Sbjct: 219 DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDT 278
Query: 121 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP------------E 168
FPD + R W+G + I G++G WNDMNEPA+F S E
Sbjct: 279 HFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTE 338
Query: 169 SNIH-------------------RGDDEIGGCQ-NHSYYHNVYGMLMARSTYEGMKLADK 208
IH R + G + H HN++G M R+ E + D
Sbjct: 339 GKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDP 398
Query: 209 DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG 268
+KR + +R+ +IG RY W GDN S W H+ +++ M+ L + G ++G D+GGF
Sbjct: 399 EKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGD 458
Query: 269 NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSF 304
+ T L R++ +G P R H + E + F
Sbjct: 459 DTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQF 494
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 168/336 (50%), Gaps = 32/336 (9%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
+PPK++ G+ Q R+ Y + + R + + +RE IP D+I+MDIDYM F+ FT +++ FP
Sbjct: 159 IPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFP 218
Query: 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPC 120
D ++ + I ++D G+K E GY VY+ G K + + ++ DG+ F+ VWPG
Sbjct: 219 DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDT 278
Query: 121 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP------------E 168
FPD + R W+G + I G++G WNDMNEPA+F S E
Sbjct: 279 HFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTE 338
Query: 169 SNIH-------------------RGDDEIGGCQ-NHSYYHNVYGMLMARSTYEGMKLADK 208
IH R + G + H HN++G M R+ E + D
Sbjct: 339 GKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDP 398
Query: 209 DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG 268
+KR + +R+ +IG RY W GDN S W H+ +++ M+ L + G ++G D+GGF
Sbjct: 399 EKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGD 458
Query: 269 NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSF 304
+ T L R++ +G P R H + E + F
Sbjct: 459 DTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQF 494
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 167/336 (49%), Gaps = 32/336 (9%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
+PPK++ G+ Q RW Y + + R + + +RE IP D+I+MDIDYM F+ FT +++ FP
Sbjct: 159 IPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFP 218
Query: 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPC 120
D ++ + I ++D G+K E GY VY+ G K + + ++ DG+ F+ VWPG
Sbjct: 219 DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDT 278
Query: 121 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP------------E 168
FPD + R W+G + I G++G WNDMNEPA+F S E
Sbjct: 279 HFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTE 338
Query: 169 SNIH-------------------RGDDEIGGCQ-NHSYYHNVYGMLMARSTYEGMKLADK 208
IH R + G + H HN++G M R+ E + D
Sbjct: 339 GKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDP 398
Query: 209 DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG 268
+KR + +R+ +IG RY W G N S W H+ +++ M+ L + G ++G D+GGF
Sbjct: 399 EKRFLMFSRSSYIGMHRYGGIWMGANKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGD 458
Query: 269 NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSF 304
+ T L R++ +G P R H + E + F
Sbjct: 459 DTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQF 494
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 167/336 (49%), Gaps = 32/336 (9%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
+PPK++ G+ Q RW Y + + R + + +RE IP D+I+MDIDYM F+ FT +++ FP
Sbjct: 159 IPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFP 218
Query: 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPC 120
D ++ + I ++D G+K E GY VY+ G K + + ++ DG+ F+ VWPG
Sbjct: 219 DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDT 278
Query: 121 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP------------E 168
FPD + R W+G + I G++G WN MNEPA+F S E
Sbjct: 279 HFPDMLNPEARKWFGDKYRFLIDQGIEGFWNAMNEPAIFYSSEGLAEAKEFAGEFAKDTE 338
Query: 169 SNIH-------------------RGDDEIGGCQ-NHSYYHNVYGMLMARSTYEGMKLADK 208
IH R + G + H HN++G M R+ E + D
Sbjct: 339 GKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDP 398
Query: 209 DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG 268
+KR + +R+ +IG RY W GDN S W H+ +++ M+ L + G ++G D+GGF
Sbjct: 399 EKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGD 458
Query: 269 NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSF 304
+ T L R++ +G P R H + E + F
Sbjct: 459 DTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQF 494
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 160/336 (47%), Gaps = 32/336 (9%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
+PPK++ G+ Q RW Y + + R + + +RE IP D I+ DIDY F+ FT +++ FP
Sbjct: 159 IPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDXIYXDIDYXQDFKDFTVNEKNFP 218
Query: 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPC 120
D + + I ++D G+K E GY VY+ G K + + ++ DG+ F+ VWPG
Sbjct: 219 DFPEFVKEXKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDT 278
Query: 121 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP------------E 168
FPD + R W+G + I G++G WND NEPA+F S E
Sbjct: 279 HFPDXLNPEARKWFGDKYRFLIDQGIEGFWNDXNEPAIFYSSEGLAEAKEFAGEFAKDTE 338
Query: 169 SNIH------RGDDEIGGCQN--------------HSYYHNVYGMLMARSTYEGMKLADK 208
IH + D + ++ H HN++G R+ E + D
Sbjct: 339 GKIHPWAXQAKXKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYNXTRAAGEAFERIDP 398
Query: 209 DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG 268
+KR +R+ +IG RY W GDN S W H+ +++ + L G ++G D+GGF
Sbjct: 399 EKRFLXFSRSSYIGXHRYGGIWXGDNKSWWSHILLNLKXLPSLNXCGFXYTGADLGGFGD 458
Query: 269 NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSF 304
+ T L R++ +G P R H + E + F
Sbjct: 459 DTTRDLLLRFLALGVFTPLXRDHAAEGTREQECYQF 494
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 158/374 (42%), Gaps = 60/374 (16%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP 60
M P WSLG+ CR+ Y +D + + IP DV + DIDYM+ FT +F
Sbjct: 287 MVPYWSLGFQLCRYGYQNDSEIASLYDEMVAAQIPYDVQYSDIDYMERQLDFTL-SPKFA 345
Query: 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDG--YFVYDSGSKIDVWIQ-KADGTPFIGEVWP 117
+L + +G + I +LDP I + Y + G + DV+I+ DG G+VWP
Sbjct: 346 GFPALINRMKADGMRVILILDPAISGNETQPYPAFTRGVEDDVFIKYPNDGDIVWGKVWP 405
Query: 118 ---------------------GPCVFPDYTQSKVRSWWGSLVKDFIYN--------GVDG 148
FPD+ ++ WW +++ N DG
Sbjct: 406 DFPDVVVNGSLDWDSQVELYRAYVAFPDFFRNSTAKWWKREIEELYNNPQNPERSLKFDG 465
Query: 149 IWNDMNEPAVF-----------------------KSVTKTMPESNIHRGDDEI---GGCQ 182
+W DMNEP+ F +S + + + +I G
Sbjct: 466 MWIDMNEPSSFVNGAVSPGCRDASLNHPPYMPHLESRDRGLSSKTLCMESQQILPDGSLV 525
Query: 183 NHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLH 242
H HN+YG R TYE ++ +R V+TR+ F S R+A W GDN + W+ L
Sbjct: 526 QHYNVHNLYGWSQTRPTYEAVQEV-TGQRGVVITRSTFPSSGRWAGHWLGDNTAAWDQLK 584
Query: 243 MSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPW 302
SI +++ L G ++G DI GF +A + RWM +GA +PF R H +P
Sbjct: 585 KSIIGMMEFSLFGISYTGADICGFFQDAEYEMCVRWMQLGAFYPFSRNHNTIGTRRQDPV 644
Query: 303 SFGEEVLFCSSIVI 316
S+ + S V+
Sbjct: 645 SWDVAFVNISRTVL 658
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 135/316 (42%), Gaps = 25/316 (7%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDI-----DYMDGFRCFTFD 55
+PP+W+LG R+ Y S+ R + ++ + P D I +D+ D +D
Sbjct: 258 LPPRWALGSFASRFGYRSEAETRATVQKYKTEDFPLDTIVLDLYWFGKDIKGHMGNLDWD 317
Query: 56 KERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEV 115
KE FP P + AD G K + + +P + +D K + G P E+
Sbjct: 318 KENFPTPLDMMADFKQQGVKTVLITEPFVLTSSKR--WDDAVKAKALAKDPQGQPKAFEL 375
Query: 116 WPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGD 175
+ G D + W+ S+ KD GV G W D+ EP + PE H
Sbjct: 376 YFGNGGIIDVFSKEGSRWFSSIYKDLSKQGVAGWWGDLGEPEMH-------PEDTQH--- 425
Query: 176 DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAAT-WTGDN 234
IG HN YG A Y+ + RPF++ RAGF+GSQRY WTGD
Sbjct: 426 -AIGDADT---VHNAYGHRWAEMLYQQQLDQFPELRPFIMMRAGFVGSQRYGMIPWTGDV 481
Query: 235 VSNWEHLHMSISMVLQLGLSGQPFSGPDIGGF-DGNATPR-LFGRWMGIGAMFPFCRGHT 292
W L + + LQ+ L G + D+GGF DG + ++ RW+ G P R H
Sbjct: 482 SRTWGGLASQVELALQMSLLGFGYIHSDLGGFADGETLDKEMYIRWLQYGVFQPVYRPHG 541
Query: 293 ESDAIDHEPWSFGEEV 308
+ D I EP EE
Sbjct: 542 Q-DHIPSEPVFQDEET 556
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 130/325 (40%), Gaps = 41/325 (12%)
Query: 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDY--MDGFRCFTFDKER 58
M PKW+ G+ Q R Y S + + + +R++ IP D I +D Y D + FDK+
Sbjct: 429 MLPKWAYGFWQSRERYKSSDEIIQNLKEYRDRKIPIDNIVLDWSYWPEDAWGSHDFDKQF 488
Query: 59 FPDPKSLAADLH-LNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWP 117
FPDPK+L +H +N I + D Y ++ + +IG+ +
Sbjct: 489 FPDPKALVDKVHAMNAQIMISVWPKFYPTTDNYKELNAKGFMFNRNLDEKNLDWIGKGYL 548
Query: 118 GPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVT----KTMPESNIHR 173
P ++ +W + +G D W D EP + ++T K + N
Sbjct: 549 NAFYDP-FSPEATAIFWKQIRDKINVHGFDAWWLDAVEPDIHSNLTFEKRKWLMTPNARG 607
Query: 174 GDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRY-AATWTG 232
EI N Y + A Y+G D DKR F+LTR+GF G QR +A W+G
Sbjct: 608 NGAEI---------FNAYAVPHAEGVYQGELATDGDKRSFILTRSGFGGIQRTGSAIWSG 658
Query: 233 DNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPR------------------- 273
D VS W + I+ + L+G DIGGF R
Sbjct: 659 DIVSRWSDMKDQIAAGIGTNLAGVTNWTFDIGGFTPEDRFRHGKKGFVGSWTALDAEQVD 718
Query: 274 ----LFGRWMGIGAMFPFCRGHTES 294
L RW GA P R H ++
Sbjct: 719 EWQELNTRWYQFGAFVPLYRSHGQN 743
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 139/372 (37%), Gaps = 81/372 (21%)
Query: 1 MPPKWSLGYHQCRWSYDSDKR-----------VREICRTFREKGIPCDVIWMDIDYMDGF 49
MPPK+ G+ Q + S R V EI ++ P + + +D+D D
Sbjct: 349 MPPKYVFGFFQGVFGTSSLLRAHMPAGENNISVEEIVEGYQNNNFPFEGLAVDVDMQDNL 408
Query: 50 RCFTFDKERF----------PDPKSLAADLHLNGFKAI---------------WMLDPGI 84
R FT E + P+ +S+ H G + ++ +
Sbjct: 409 RVFTTKGEFWTANRVGTGGDPNNRSVFEWAHDKGLVCQTNITCFLRNDNEGQDYEVNQTL 468
Query: 85 KHEDGYFVYDSGSKIDVWIQK-ADGTPFIGEVWPG-----PCVFPDYTQSKVRSWWGSLV 138
+ Y DS + D + +IG + G +FPD+ + V WWG+
Sbjct: 469 RERQLYTKNDSLTGTDFGMTDDGPSDAYIGHLDYGGGVECDALFPDWGRPDVAEWWGNNY 528
Query: 139 KDFIYNGVDGIWNDMNEPAVFKSVT----KTMPESNIHRGDDEIGGCQNHSYYH------ 188
K G+D +W DM PA+ P+ N DD G N YH
Sbjct: 529 KKLFSIGLDFVWQDMTVPAMMPHKIGDDINVKPDGNWPNADDPSNGQYNWKTYHPQVLVT 588
Query: 189 ----------------NVYGMLMARST-----YEGMKLADKDKRPFVLTRAGFIGSQRYA 227
N++ + ST E K +R ++++R G+IG+Q +
Sbjct: 589 DMRYENHGREPMVTQRNIHAYTLCESTRKEGIVENADTLTKFRRSYIISRGGYIGNQHFG 648
Query: 228 ATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGF-----DGNATP---RLFGRWM 279
W GDN + ++ M I+ + + +S P G DIGGF + TP L R++
Sbjct: 649 GMWVGDNSTTSNYIQMMIANNINMNMSCLPLVGSDIGGFTSYDNENQRTPCTGDLMVRYV 708
Query: 280 GIGAMFPFCRGH 291
G + P+ R H
Sbjct: 709 QAGCLLPWFRNH 720
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 139/328 (42%), Gaps = 36/328 (10%)
Query: 1 MPPKWSLGY---HQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFR-C-FTFD 55
+PP WS G +YD + V E+ +P V D +M F+ C F +D
Sbjct: 263 LPPAWSFGLWLTTSFTTNYD-EATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWD 321
Query: 56 KERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEV 115
FPDP+ + L G K ++P I + V+ + +++ DG+ + +
Sbjct: 322 PLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSP--VFKELQEKGYLLKRPDGSLWQWDK 379
Query: 116 W-PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE--PAVFKSVTKTMPESNIH 172
W PG ++ D+T W+ +K + GVD D E P + + P+
Sbjct: 380 WQPGLAIY-DFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQ---- 434
Query: 173 RGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTG 232
+ H++Y +Y L+ + +K ++ + R+ +G+Q++ W G
Sbjct: 435 ---------KMHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVGAQKFPVHWGG 481
Query: 233 DNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHT 292
D +N+E + S+ L +GLSG F DIGGF+ A ++ RW G + R H
Sbjct: 482 DCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHG 541
Query: 293 ESDAIDHEPWSFGEEVLFCSSIVIIAFF 320
PW++ +E S ++ FF
Sbjct: 542 SKSY--RVPWAYDDE-----SCDVVRFF 562
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 139/328 (42%), Gaps = 36/328 (10%)
Query: 1 MPPKWSLGY---HQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFR-C-FTFD 55
+PP WS G +YD + V E+ +P V D +M F+ C F +D
Sbjct: 263 LPPAWSFGLWLTTSFTTNYD-EATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWD 321
Query: 56 KERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEV 115
FPDP+ + L G K ++P I + V+ + +++ DG+ + +
Sbjct: 322 PLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSP--VFKELQEKGYLLKRPDGSLWQWDK 379
Query: 116 W-PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE--PAVFKSVTKTMPESNIH 172
W PG ++ D+T W+ +K + GVD D E P + + P+
Sbjct: 380 WQPGLAIY-DFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQ---- 434
Query: 173 RGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTG 232
+ H++Y +Y L+ + +K ++ + R+ +G+Q++ W G
Sbjct: 435 ---------KMHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVGAQKFPVHWGG 481
Query: 233 DNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHT 292
D +N+E + S+ L +GLSG F DIGGF+ A ++ RW G + R H
Sbjct: 482 DCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHG 541
Query: 293 ESDAIDHEPWSFGEEVLFCSSIVIIAFF 320
PW++ +E S ++ FF
Sbjct: 542 SKSY--RVPWAYDDE-----SCDVVRFF 562
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 136/328 (41%), Gaps = 36/328 (10%)
Query: 1 MPPKWSLGY---HQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFR-C-FTFD 55
+PP WS G +YD + V E+ +P V D + F+ C F +D
Sbjct: 263 LPPAWSFGLWLTTSFTTNYD-EATVNSFIDGXAERNLPLHVFHFDCFWXKAFQWCDFEWD 321
Query: 56 KERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEV 115
FPDP+ L G K ++P I + V+ + +++ DG+ + +
Sbjct: 322 PLTFPDPEGXIRRLKAKGLKICVWINPYIGQKSP--VFKELQEKGYLLKRPDGSLWQWDK 379
Query: 116 W-PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE--PAVFKSVTKTMPESNIH 172
W PG ++ D+T W+ +K + GVD D E P + + P+
Sbjct: 380 WQPGLAIY-DFTNPDACKWYADKLKGLVAXGVDCFKTDFGERIPTDVQWFDGSDPQ---- 434
Query: 173 RGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTG 232
+ H++Y +Y L+ + +K ++ + R+ +G+Q++ W G
Sbjct: 435 ---------KXHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVGAQKFPVHWGG 481
Query: 233 DNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHT 292
D +N+E S+ L +GLSG F DIGGF+ A ++ RW G + R H
Sbjct: 482 DCYANYESXAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHG 541
Query: 293 ESDAIDHEPWSFGEEVLFCSSIVIIAFF 320
PW++ +E S ++ FF
Sbjct: 542 SKSY--RVPWAYDDE-----SCDVVRFF 562
>pdb|1CL3|A Chain A, Molecular Insights Into Pebp2CBF-Smmhc Associated Acute
Leukemia Revealed From The Three-Dimensional Structure
Of Pebp2CBF BETA
Length = 138
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 40 WMDIDYMDGFRCFTFDKERFPDPKSLA 66
W+D+ +DG C FD+ER +LA
Sbjct: 110 WIDLHRLDGMGCLEFDEERAQQEDALA 136
>pdb|2JHB|A Chain A, Core Binding Factor Beta
Length = 143
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 40 WMDIDYMDGFRCFTFDKERFPDPKSLA 66
W+D+ +DG C FD+ER +LA
Sbjct: 115 WIDLHRLDGMGCLEFDEERAQQEDALA 141
>pdb|1IO4|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1ILF|A Chain A, Nmr Structure Of Apo Cbfb
Length = 141
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 40 WMDIDYMDGFRCFTFDKERFPDPKSLA 66
W+D+ +DG C FD+ER +LA
Sbjct: 113 WIDLHRLDGMGCLEFDEERAQQEDALA 139
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 98 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 141
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 98 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 141
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 98 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 141
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 98 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 141
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 98 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 141
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 58 RFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVW--IQKADGTPFIGEV 115
+ P SL + L A + P + Y Y +G W +Q +P I +
Sbjct: 98 KLASPVSLTDKIQLGCLPAAGTILP-----NNYVCYVTG-----WGRLQTNGASPDILQ- 146
Query: 116 WPGPCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGIWNDMN 154
G + DY WWGS VK + I G DGI + N
Sbjct: 147 -QGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCN 185
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 110 PFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMN 154
P E+ G DY R WWG+ VK+ + G DG+ + N
Sbjct: 152 PIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACN 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.486
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,886,110
Number of Sequences: 62578
Number of extensions: 553878
Number of successful extensions: 1165
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 43
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)