Query 020492
Match_columns 325
No_of_seqs 137 out of 1252
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:49:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02763 hydrolase, hydrolyzin 100.0 2.6E-87 5.7E-92 675.3 30.2 318 1-318 182-499 (978)
2 cd06604 GH31_glucosidase_II_Ma 100.0 6.9E-87 1.5E-91 621.8 29.4 316 1-319 5-321 (339)
3 cd06603 GH31_GANC_GANAB_alpha 100.0 4.3E-86 9.3E-91 616.1 29.3 314 1-320 5-322 (339)
4 cd06600 GH31_MGAM-like This fa 100.0 5.2E-86 1.1E-90 609.5 28.0 294 1-319 5-299 (317)
5 cd06598 GH31_transferase_CtsZ 100.0 3.2E-84 6.9E-89 598.0 29.1 301 1-318 5-315 (317)
6 cd06602 GH31_MGAM_SI_GAA This 100.0 1.1E-83 2.5E-88 598.3 28.8 294 1-320 5-304 (339)
7 cd06601 GH31_lyase_GLase GLase 100.0 8.4E-83 1.8E-87 588.0 28.3 291 1-318 5-330 (332)
8 cd06593 GH31_xylosidase_YicI Y 100.0 1.4E-82 3.1E-87 586.4 29.4 298 1-319 5-305 (308)
9 cd06591 GH31_xylosidase_XylS X 100.0 1.7E-81 3.6E-86 580.3 28.8 300 1-312 5-318 (319)
10 cd06599 GH31_glycosidase_Aec37 100.0 4.6E-81 1E-85 576.9 26.4 299 1-312 5-316 (317)
11 KOG1066 Glucosidase II catalyt 100.0 7.7E-81 1.7E-85 590.8 18.1 312 1-318 353-668 (915)
12 cd06597 GH31_transferase_CtsY 100.0 8.8E-79 1.9E-83 565.3 25.7 293 1-310 5-332 (340)
13 cd06594 GH31_glucosidase_YihQ 100.0 1.2E-78 2.7E-83 559.7 25.8 293 1-311 5-315 (317)
14 PRK10658 putative alpha-glucos 100.0 2.2E-78 4.7E-83 602.1 27.6 300 1-319 262-565 (665)
15 COG1501 Alpha-glucosidases, fa 100.0 2.1E-77 4.6E-82 599.3 25.7 302 1-319 260-566 (772)
16 PF01055 Glyco_hydro_31: Glyco 100.0 2.4E-76 5.2E-81 570.8 23.9 313 1-320 24-338 (441)
17 cd06595 GH31_xylosidase_XylS-l 100.0 2.5E-74 5.4E-79 526.3 23.9 273 1-312 6-291 (292)
18 PRK10426 alpha-glucosidase; Pr 100.0 1.3E-71 2.9E-76 552.2 28.0 297 1-319 203-520 (635)
19 cd06589 GH31 The enzymes of gl 100.0 1.9E-71 4.1E-76 501.4 24.9 257 1-313 5-265 (265)
20 cd06592 GH31_glucosidase_KIAA1 100.0 2.5E-68 5.5E-73 489.2 23.3 278 1-313 13-303 (303)
21 KOG1065 Maltase glucoamylase a 100.0 1.5E-66 3.3E-71 507.6 20.1 308 1-318 292-602 (805)
22 cd06596 GH31_CPE1046 CPE1046 i 100.0 2.4E-47 5.3E-52 332.5 18.3 228 1-319 5-253 (261)
23 PF02065 Melibiase: Melibiase; 99.8 6.5E-19 1.4E-23 166.0 17.2 265 16-320 54-333 (394)
24 PLN03231 putative alpha-galact 99.5 1.5E-12 3.2E-17 120.5 18.4 196 18-248 16-255 (357)
25 COG3345 GalA Alpha-galactosida 99.5 4.3E-13 9.3E-18 126.8 11.6 264 10-321 296-584 (687)
26 PLN02229 alpha-galactosidase 99.4 5.4E-11 1.2E-15 112.2 18.0 161 18-249 78-254 (427)
27 PLN02692 alpha-galactosidase 99.3 8.5E-11 1.9E-15 110.4 19.2 162 18-249 71-248 (412)
28 PLN02899 alpha-galactosidase 99.3 4.9E-11 1.1E-15 115.7 17.1 192 18-248 46-286 (633)
29 PLN02808 alpha-galactosidase 99.3 1.9E-10 4.2E-15 107.7 19.1 163 17-249 46-224 (386)
30 KOG2366 Alpha-D-galactosidase 98.5 1.4E-06 3.1E-11 79.8 11.1 191 19-284 59-281 (414)
31 PLN02355 probable galactinol-- 98.1 2.8E-05 6E-10 77.8 10.8 139 10-154 207-396 (758)
32 PLN02219 probable galactinol-- 97.9 8.1E-05 1.7E-09 74.5 10.9 148 3-154 195-388 (775)
33 PF14871 GHL6: Hypothetical gl 97.9 0.00023 5E-09 57.2 11.0 120 22-153 2-132 (132)
34 PLN02684 Probable galactinol-- 97.9 0.00011 2.4E-09 73.4 10.8 145 3-154 198-387 (750)
35 PLN02711 Probable galactinol-- 97.8 0.0002 4.3E-09 71.8 11.6 131 18-154 228-407 (777)
36 PF02638 DUF187: Glycosyl hydr 97.5 0.0011 2.5E-08 61.2 11.7 134 16-153 15-162 (311)
37 TIGR02456 treS_nterm trehalose 97.5 0.00095 2.1E-08 66.5 11.7 133 17-154 25-199 (539)
38 PF13200 DUF4015: Putative gly 97.5 0.0016 3.4E-08 60.0 12.2 130 13-155 6-147 (316)
39 PF05691 Raffinose_syn: Raffin 97.4 0.0016 3.5E-08 65.8 11.2 146 3-154 191-390 (747)
40 COG1649 Uncharacterized protei 97.4 0.0024 5.1E-08 60.7 11.5 136 16-154 60-208 (418)
41 PRK10933 trehalose-6-phosphate 97.3 0.0025 5.4E-08 63.6 12.3 133 18-155 31-203 (551)
42 PLN00196 alpha-amylase; Provis 97.3 0.0066 1.4E-07 58.6 14.0 134 19-154 43-205 (428)
43 PF00128 Alpha-amylase: Alpha 97.2 0.0007 1.5E-08 61.8 6.5 132 20-154 4-170 (316)
44 PRK10785 maltodextrin glucosid 97.2 0.0044 9.6E-08 62.5 12.1 129 18-154 177-337 (598)
45 TIGR02403 trehalose_treC alpha 97.1 0.0069 1.5E-07 60.4 12.2 134 17-155 24-196 (543)
46 TIGR02104 pulA_typeI pullulana 97.0 0.0063 1.4E-07 61.5 11.7 89 61-154 230-321 (605)
47 TIGR01515 branching_enzym alph 97.0 0.01 2.3E-07 60.0 12.7 128 18-154 154-297 (613)
48 PRK12313 glycogen branching en 96.6 0.027 5.8E-07 57.4 12.3 127 20-155 170-312 (633)
49 PRK09441 cytoplasmic alpha-amy 96.5 0.05 1.1E-06 53.5 13.3 33 123-155 203-236 (479)
50 PRK03705 glycogen debranching 96.5 0.012 2.7E-07 59.7 9.1 91 61-154 243-338 (658)
51 PLN02361 alpha-amylase 96.4 0.067 1.5E-06 51.2 13.1 131 20-155 29-182 (401)
52 PLN02784 alpha-amylase 96.3 0.086 1.9E-06 54.5 13.4 133 20-155 521-676 (894)
53 TIGR02100 glgX_debranch glycog 96.2 0.027 5.8E-07 57.7 9.5 93 61-155 246-344 (688)
54 PRK05402 glycogen branching en 96.1 0.088 1.9E-06 54.5 13.0 127 18-154 263-406 (726)
55 PLN02447 1,4-alpha-glucan-bran 96.1 0.05 1.1E-06 55.9 10.8 128 22-158 253-396 (758)
56 PRK14510 putative bifunctional 96.1 0.026 5.5E-07 61.4 9.1 93 61-154 248-344 (1221)
57 COG0366 AmyA Glycosidases [Car 96.0 0.069 1.5E-06 52.4 11.3 133 17-154 26-200 (505)
58 TIGR01370 cysRS possible cyste 95.7 0.047 1E-06 50.4 8.1 103 35-155 64-170 (315)
59 PF13199 Glyco_hydro_66: Glyco 95.6 0.072 1.6E-06 53.0 9.5 203 18-251 116-350 (559)
60 TIGR02102 pullulan_Gpos pullul 95.5 0.06 1.3E-06 57.6 9.1 86 61-154 556-644 (1111)
61 PLN02960 alpha-amylase 95.5 0.17 3.7E-06 52.6 11.8 131 18-157 414-561 (897)
62 PRK14705 glycogen branching en 95.4 0.1 2.2E-06 56.4 10.4 125 22-155 768-907 (1224)
63 PRK12568 glycogen branching en 95.4 0.19 4.1E-06 51.6 11.7 123 23-154 273-410 (730)
64 COG1523 PulA Type II secretory 95.4 0.082 1.8E-06 53.8 9.0 90 61-154 266-361 (697)
65 PRK09505 malS alpha-amylase; R 95.2 0.27 5.9E-06 50.3 12.3 63 18-82 228-314 (683)
66 PF10566 Glyco_hydro_97: Glyco 95.2 0.1 2.2E-06 47.1 8.2 61 18-81 30-94 (273)
67 PRK14706 glycogen branching en 95.1 0.22 4.7E-06 50.7 11.3 124 23-155 171-309 (639)
68 PLN03244 alpha-amylase; Provis 95.1 0.068 1.5E-06 54.6 7.4 91 61-157 442-536 (872)
69 TIGR02402 trehalose_TreZ malto 95.0 0.27 5.8E-06 49.1 11.6 121 18-154 109-246 (542)
70 KOG0471 Alpha-amylase [Carbohy 94.3 0.37 8E-06 48.2 10.4 136 18-155 38-216 (545)
71 TIGR02103 pullul_strch alpha-1 94.2 0.18 4E-06 52.9 8.4 89 61-154 405-498 (898)
72 PLN02982 galactinol-raffinose 94.2 0.48 1E-05 48.4 10.9 30 18-47 237-266 (865)
73 COG0296 GlgB 1,4-alpha-glucan 94.1 0.34 7.4E-06 48.7 9.5 130 18-156 163-307 (628)
74 COG2342 Predicted extracellula 93.7 0.31 6.8E-06 43.6 7.7 108 32-157 40-151 (300)
75 PLN02877 alpha-amylase/limit d 91.8 0.8 1.7E-05 48.4 8.8 88 62-154 468-561 (970)
76 KOG0470 1,4-alpha-glucan branc 90.5 0.76 1.7E-05 46.5 6.8 89 61-155 312-405 (757)
77 PF02449 Glyco_hydro_42: Beta- 90.1 1.3 2.8E-05 42.1 7.9 123 19-158 9-140 (374)
78 smart00642 Aamy Alpha-amylase 87.6 2.4 5.1E-05 35.4 6.9 63 17-82 16-92 (166)
79 TIGR02455 TreS_stutzeri trehal 87.3 4.2 9.1E-05 41.2 9.5 32 123-154 262-296 (688)
80 PRK14582 pgaB outer membrane N 87.3 7.7 0.00017 39.8 11.6 121 19-153 333-466 (671)
81 PF01301 Glyco_hydro_35: Glyco 83.9 4.3 9.4E-05 37.7 7.5 75 9-88 16-91 (319)
82 PF01120 Alpha_L_fucos: Alpha- 82.1 16 0.00035 34.3 10.6 119 19-156 90-217 (346)
83 PF14885 GHL15: Hypothetical g 75.7 5.6 0.00012 28.8 4.2 56 97-154 17-76 (79)
84 PRK13840 sucrose phosphorylase 75.6 3.3 7.2E-05 40.8 3.9 129 18-154 18-195 (495)
85 cd02742 GH20_hexosaminidase Be 74.6 17 0.00038 33.3 8.3 193 12-243 9-222 (303)
86 cd06570 GH20_chitobiase-like_1 74.2 29 0.00063 32.1 9.6 114 15-143 13-144 (311)
87 PF03537 Glyco_hydro_114: Glyc 73.2 6 0.00013 28.2 3.8 34 34-82 25-58 (74)
88 cd06565 GH20_GcnA-like Glycosy 72.2 45 0.00097 30.6 10.4 116 11-143 8-128 (301)
89 cd04883 ACT_AcuB C-terminal AC 71.8 23 0.00049 24.3 6.6 58 20-78 13-70 (72)
90 TIGR03852 sucrose_gtfA sucrose 67.6 6.9 0.00015 38.3 4.1 34 121-154 158-191 (470)
91 COG4868 Uncharacterized protei 67.6 25 0.00054 32.5 7.3 76 19-106 91-167 (493)
92 cd06562 GH20_HexA_HexB-like Be 65.9 59 0.0013 30.5 9.9 120 15-143 13-146 (348)
93 cd06564 GH20_DspB_LnbB-like Gl 65.6 21 0.00045 33.2 6.8 114 16-143 13-152 (326)
94 PF00728 Glyco_hydro_20: Glyco 63.2 20 0.00044 33.3 6.3 133 12-151 11-162 (351)
95 PRK10265 chaperone-modulator p 61.8 17 0.00037 27.5 4.5 47 270-324 19-65 (101)
96 COG0036 Rpe Pentose-5-phosphat 59.7 14 0.00031 32.2 4.2 63 24-86 51-122 (220)
97 KOG3111 D-ribulose-5-phosphate 59.7 14 0.00031 31.5 4.0 40 48-87 87-126 (224)
98 smart00812 Alpha_L_fucos Alpha 58.8 1.3E+02 0.0029 28.7 11.0 110 20-155 81-203 (384)
99 cd06563 GH20_chitobiase-like T 58.4 79 0.0017 29.8 9.4 119 15-143 13-162 (357)
100 PF10096 DUF2334: Uncharacteri 57.6 41 0.00088 29.9 6.9 62 17-79 13-74 (243)
101 PF00331 Glyco_hydro_10: Glyco 57.1 13 0.00028 34.5 3.8 52 19-78 187-238 (320)
102 cd06569 GH20_Sm-chitobiase-lik 57.1 1E+02 0.0023 30.0 10.1 126 16-143 18-191 (445)
103 PF01373 Glyco_hydro_14: Glyco 57.0 16 0.00035 34.9 4.3 83 20-109 16-111 (402)
104 cd06416 GH25_Lys1-like Lys-1 i 56.6 16 0.00035 31.1 4.1 63 19-83 70-133 (196)
105 TIGR03356 BGL beta-galactosida 56.1 34 0.00075 33.1 6.6 107 20-159 54-165 (427)
106 PF13653 GDPD_2: Glycerophosph 55.7 10 0.00022 22.0 1.8 17 137-153 12-28 (30)
107 smart00633 Glyco_10 Glycosyl h 54.8 41 0.0009 29.9 6.5 50 19-78 135-187 (254)
108 PLN02635 disproportionating en 54.1 15 0.00032 36.8 3.7 85 63-152 227-323 (538)
109 COG1306 Uncharacterized conser 53.5 1.4E+02 0.0031 27.5 9.4 127 18-154 75-218 (400)
110 cd06542 GH18_EndoS-like Endo-b 53.5 50 0.0011 29.2 6.9 20 62-81 53-72 (255)
111 cd06568 GH20_SpHex_like A subg 53.5 98 0.0021 28.8 9.0 179 16-233 14-214 (329)
112 PLN02705 beta-amylase 52.2 1.1E+02 0.0024 31.0 9.2 87 16-109 264-364 (681)
113 PRK14511 maltooligosyl trehalo 51.9 58 0.0013 34.6 7.8 75 3-82 5-91 (879)
114 PF07488 Glyco_hydro_67M: Glyc 50.2 61 0.0013 29.8 6.7 97 19-150 56-155 (328)
115 PF14883 GHL13: Hypothetical g 50.1 2.1E+02 0.0045 26.3 11.2 114 19-151 16-142 (294)
116 PRK14508 4-alpha-glucanotransf 49.2 21 0.00046 35.3 4.0 85 63-152 201-297 (497)
117 TIGR02401 trehalose_TreY malto 48.9 56 0.0012 34.5 7.1 62 18-82 14-87 (825)
118 cd00419 Ferrochelatase_C Ferro 48.5 88 0.0019 25.0 6.9 62 19-85 40-103 (135)
119 PF04468 PSP1: PSP1 C-terminal 46.8 1.1E+02 0.0025 22.4 7.0 56 20-75 25-82 (88)
120 COG3589 Uncharacterized conser 46.7 23 0.00051 32.9 3.5 58 20-86 16-75 (360)
121 PRK13663 hypothetical protein; 46.1 1.8E+02 0.0038 28.2 9.2 49 19-79 91-139 (493)
122 COG0041 PurE Phosphoribosylcar 45.7 78 0.0017 26.1 6.0 49 19-80 15-64 (162)
123 PRK08883 ribulose-phosphate 3- 45.3 31 0.00067 30.2 4.1 62 24-85 47-118 (220)
124 COG1874 LacA Beta-galactosidas 45.1 2.8E+02 0.006 28.7 11.2 125 19-158 29-163 (673)
125 PHA02119 hypothetical protein 44.2 12 0.00026 26.1 1.0 48 28-75 20-69 (87)
126 PRK08745 ribulose-phosphate 3- 44.2 34 0.00074 30.0 4.1 63 24-86 51-123 (223)
127 PF11308 GHL1-3: Glycosyl hydr 44.1 61 0.0013 30.0 5.9 55 96-154 70-128 (307)
128 PF08924 DUF1906: Domain of un 43.7 51 0.0011 26.4 4.8 59 19-79 76-135 (136)
129 PF13546 DDE_5: DDE superfamil 43.0 82 0.0018 28.2 6.6 49 20-82 170-218 (273)
130 PRK09593 arb 6-phospho-beta-gl 42.0 1.8E+02 0.0039 28.7 9.2 109 20-160 73-187 (478)
131 PLN03059 beta-galactosidase; P 41.9 72 0.0016 33.7 6.6 66 18-87 57-125 (840)
132 cd02871 GH18_chitinase_D-like 41.8 1E+02 0.0022 28.3 7.2 58 61-154 61-119 (312)
133 PF07485 DUF1529: Domain of Un 41.0 29 0.00063 27.4 2.9 69 1-71 37-118 (123)
134 TIGR00217 malQ 4-alpha-glucano 40.8 20 0.00043 35.6 2.4 75 65-143 217-303 (513)
135 COG1242 Predicted Fe-S oxidore 39.8 1.5E+02 0.0033 27.0 7.4 57 19-79 128-187 (312)
136 PRK09454 ugpQ cytoplasmic glyc 39.7 48 0.001 29.3 4.5 18 137-154 222-239 (249)
137 PF08903 DUF1846: Domain of un 38.0 1.3E+02 0.0029 29.0 7.1 49 19-79 90-138 (491)
138 PLN02645 phosphoglycolate phos 37.7 1.2E+02 0.0025 27.9 6.9 51 19-81 18-68 (311)
139 cd08613 GDPD_GDE4_like_1 Glyce 37.6 49 0.0011 30.6 4.2 18 62-79 253-270 (309)
140 cd04909 ACT_PDH-BS C-terminal 36.8 84 0.0018 21.2 4.5 54 21-76 14-69 (69)
141 COG1553 DsrE Uncharacterized c 36.8 1.4E+02 0.0031 23.6 6.0 65 14-78 12-77 (126)
142 PF00150 Cellulase: Cellulase 36.4 25 0.00054 31.2 2.2 59 21-81 22-83 (281)
143 KOG1405 4-aminobutyrate aminot 35.7 1E+02 0.0022 29.2 5.9 55 19-78 255-310 (484)
144 cd02877 GH18_hevamine_XipI_cla 35.7 1.5E+02 0.0033 26.9 7.1 24 58-81 57-80 (280)
145 PF13344 Hydrolase_6: Haloacid 35.6 66 0.0014 24.1 4.1 25 55-79 12-36 (101)
146 PRK09722 allulose-6-phosphate 35.1 57 0.0012 28.8 4.1 62 25-86 50-121 (229)
147 cd08575 GDPD_GDE4_like Glycero 35.0 56 0.0012 29.2 4.2 17 137-153 244-260 (264)
148 PRK14507 putative bifunctional 34.9 1.2E+02 0.0027 34.7 7.4 62 18-82 756-829 (1693)
149 TIGR00262 trpA tryptophan synt 34.9 1.4E+02 0.0031 26.7 6.7 68 18-85 70-152 (256)
150 PF14488 DUF4434: Domain of un 34.7 1.4E+02 0.0029 24.9 6.1 56 18-79 18-84 (166)
151 TIGR01233 lacG 6-phospho-beta- 34.6 1.2E+02 0.0027 29.7 6.8 108 20-160 53-164 (467)
152 COG0826 Collagenase and relate 34.6 2E+02 0.0044 27.0 7.9 25 61-85 50-74 (347)
153 COG3661 AguA Alpha-glucuronida 33.9 2.2E+02 0.0047 27.8 7.8 104 18-152 181-288 (684)
154 cd04908 ACT_Bt0572_1 N-termina 33.9 1.5E+02 0.0032 19.9 7.0 53 20-77 13-65 (66)
155 PLN02950 4-alpha-glucanotransf 32.6 53 0.0012 35.1 4.1 77 63-143 464-546 (909)
156 TIGR01668 YqeG_hyp_ppase HAD s 32.4 1.5E+02 0.0032 24.5 6.0 42 35-80 24-66 (170)
157 smart00481 POLIIIAc DNA polyme 31.7 1.6E+02 0.0035 19.8 5.6 47 18-78 13-59 (67)
158 COG0647 NagD Predicted sugar p 31.5 92 0.002 28.2 4.9 41 36-81 8-48 (269)
159 TIGR01459 HAD-SF-IIA-hyp4 HAD- 31.2 96 0.0021 27.1 5.0 41 36-81 8-48 (242)
160 PLN02801 beta-amylase 31.2 1.3E+02 0.0028 29.8 6.1 86 16-108 33-132 (517)
161 PF05913 DUF871: Bacterial pro 31.2 60 0.0013 30.7 3.8 61 18-85 12-72 (357)
162 PRK08057 cobalt-precorrin-6x r 31.1 1.8E+02 0.0039 25.9 6.7 68 18-86 10-79 (248)
163 PRK06769 hypothetical protein; 31.0 61 0.0013 26.9 3.5 23 57-79 28-50 (173)
164 PF14872 GHL5: Hypothetical gl 30.8 1.5E+02 0.0032 30.4 6.4 37 123-159 359-395 (811)
165 PF12138 Spherulin4: Spherulat 30.8 82 0.0018 28.2 4.5 73 6-86 70-152 (253)
166 PLN02161 beta-amylase 30.6 1.4E+02 0.003 29.6 6.1 87 16-109 113-213 (531)
167 PLN02803 beta-amylase 30.6 1.3E+02 0.0028 29.9 6.0 87 16-109 103-203 (548)
168 COG1878 Kynurenine formamidase 30.5 1.1E+02 0.0025 26.7 5.1 58 24-82 96-154 (218)
169 cd03078 GST_N_Metaxin1_like GS 30.1 1.9E+02 0.004 20.2 5.4 54 20-73 17-73 (73)
170 PF00834 Ribul_P_3_epim: Ribul 29.9 59 0.0013 28.0 3.3 33 54-86 86-118 (201)
171 TIGR01162 purE phosphoribosyla 29.6 2.1E+02 0.0045 23.6 6.2 50 19-81 11-61 (156)
172 cd06546 GH18_CTS3_chitinase GH 29.5 1.6E+02 0.0035 26.3 6.2 21 61-81 60-80 (256)
173 cd02875 GH18_chitobiase Chitob 29.2 1.5E+02 0.0033 27.9 6.2 59 59-155 62-122 (358)
174 PF11181 YflT: Heat induced st 28.9 70 0.0015 24.1 3.2 26 16-41 6-31 (103)
175 PRK15063 isocitrate lyase; Pro 28.4 1.5E+02 0.0033 28.7 6.0 31 51-82 316-348 (428)
176 cd06522 GH25_AtlA-like AtlA is 28.1 93 0.002 26.3 4.2 57 20-83 74-133 (192)
177 cd04882 ACT_Bt0572_2 C-termina 27.9 1.8E+02 0.0038 19.0 5.8 53 20-76 11-64 (65)
178 cd08563 GDPD_TtGDE_like Glycer 27.6 98 0.0021 26.8 4.4 17 137-153 213-229 (230)
179 PLN00197 beta-amylase; Provisi 27.0 1.7E+02 0.0036 29.4 6.1 86 17-109 124-223 (573)
180 cd02874 GH18_CFLE_spore_hydrol 27.0 1.5E+02 0.0033 27.1 5.7 65 62-154 47-112 (313)
181 TIGR01664 DNA-3'-Pase DNA 3'-p 26.4 82 0.0018 26.0 3.5 23 58-80 43-65 (166)
182 TIGR00213 GmhB_yaeD D,D-heptos 26.1 82 0.0018 26.0 3.5 22 58-79 27-48 (176)
183 cd02874 GH18_CFLE_spore_hydrol 26.1 72 0.0016 29.2 3.4 56 21-83 91-147 (313)
184 cd06545 GH18_3CO4_chitinase Th 25.9 1.8E+02 0.004 25.6 5.9 62 61-155 47-109 (253)
185 cd04934 ACT_AK-Hom3_1 CT domai 25.6 2.2E+02 0.0048 19.9 5.1 50 19-72 15-66 (73)
186 PLN02905 beta-amylase 25.6 1.8E+02 0.0039 29.7 6.0 87 16-109 282-382 (702)
187 COG0602 NrdG Organic radical a 25.6 2E+02 0.0044 24.9 5.9 53 18-80 54-106 (212)
188 PF03659 Glyco_hydro_71: Glyco 25.5 1.8E+02 0.0038 27.9 6.0 55 18-82 15-69 (386)
189 TIGR01261 hisB_Nterm histidino 25.5 88 0.0019 25.7 3.5 23 57-79 29-51 (161)
190 TIGR01691 enolase-ppase 2,3-di 25.3 54 0.0012 28.6 2.3 29 53-81 91-119 (220)
191 cd08561 GDPD_cytoplasmic_ScUgp 25.3 1.2E+02 0.0025 26.8 4.5 17 137-153 225-241 (249)
192 cd02872 GH18_chitolectin_chito 24.9 60 0.0013 30.4 2.7 59 22-82 101-162 (362)
193 TIGR01656 Histidinol-ppas hist 24.9 89 0.0019 25.0 3.4 22 58-79 28-49 (147)
194 PF06342 DUF1057: Alpha/beta h 24.9 2E+02 0.0043 26.4 5.7 52 60-141 49-100 (297)
195 PF12692 Methyltransf_17: S-ad 24.6 54 0.0012 26.9 1.9 72 198-279 41-116 (160)
196 cd06549 GH18_trifunctional GH1 24.5 84 0.0018 28.7 3.5 30 228-261 261-290 (298)
197 TIGR01675 plant-AP plant acid 24.4 1.4E+02 0.0031 26.3 4.7 60 20-79 61-142 (229)
198 COG3693 XynA Beta-1,4-xylanase 24.2 1.6E+02 0.0034 27.5 5.0 23 20-42 204-226 (345)
199 cd08612 GDPD_GDE4 Glycerophosp 24.1 1.3E+02 0.0027 27.6 4.6 17 137-153 274-290 (300)
200 PLN03236 4-alpha-glucanotransf 23.8 96 0.0021 32.4 4.0 75 64-142 278-358 (745)
201 cd06415 GH25_Cpl1-like Cpl-1 l 23.7 1E+02 0.0022 26.2 3.6 57 22-83 73-131 (196)
202 COG0276 HemH Protoheme ferro-l 23.3 2.6E+02 0.0056 26.1 6.3 64 19-87 206-270 (320)
203 cd06525 GH25_Lyc-like Lyc mura 23.2 71 0.0015 26.8 2.6 23 62-84 105-128 (184)
204 PRK12563 sulfate adenylyltrans 22.9 1.3E+02 0.0029 27.8 4.4 49 19-79 50-100 (312)
205 PF11340 DUF3142: Protein of u 22.9 2.5E+02 0.0054 23.8 5.6 52 20-80 27-81 (181)
206 PF00762 Ferrochelatase: Ferro 22.8 2.1E+02 0.0045 26.5 5.7 61 20-87 207-268 (316)
207 PF13407 Peripla_BP_4: Peripla 22.7 3.9E+02 0.0084 22.9 7.4 50 18-82 40-89 (257)
208 PRK08005 epimerase; Validated 22.6 2.4E+02 0.0051 24.5 5.7 62 25-86 49-119 (210)
209 PLN02814 beta-glucosidase 22.4 2.2E+02 0.0047 28.3 6.1 108 20-159 77-189 (504)
210 PRK13511 6-phospho-beta-galact 22.2 2.8E+02 0.0061 27.2 6.8 107 21-160 55-165 (469)
211 cd02876 GH18_SI-CLP Stabilin-1 22.1 78 0.0017 29.1 2.8 60 22-84 97-158 (318)
212 KOG0674 Calreticulin [Posttran 22.0 38 0.00083 31.2 0.7 12 257-268 131-142 (406)
213 TIGR01684 viral_ppase viral ph 21.9 1.2E+02 0.0026 27.9 3.9 22 60-81 149-170 (301)
214 PRK15447 putative protease; Pr 21.7 1.8E+02 0.0038 26.7 5.0 57 20-84 15-71 (301)
215 PRK13745 anaerobic sulfatase-m 21.6 2.2E+02 0.0047 27.4 5.8 54 18-84 151-204 (412)
216 PF08821 CGGC: CGGC domain; I 21.6 3.7E+02 0.0081 20.5 6.5 54 19-79 51-105 (107)
217 PLN02998 beta-glucosidase 21.6 2E+02 0.0044 28.5 5.7 109 20-160 82-195 (497)
218 cd03465 URO-D_like The URO-D _ 21.5 1.2E+02 0.0025 27.9 3.9 58 22-81 170-229 (330)
219 TIGR01452 PGP_euk phosphoglyco 21.3 1.8E+02 0.0039 26.1 5.0 40 37-81 3-42 (279)
220 cd06414 GH25_LytC-like The Lyt 21.3 93 0.002 26.3 2.9 22 62-83 115-136 (191)
221 cd08564 GDPD_GsGDE_like Glycer 21.2 1.6E+02 0.0035 26.2 4.6 17 137-153 240-256 (265)
222 TIGR02055 APS_reductase thiore 21.2 1.7E+02 0.0037 24.7 4.6 42 26-79 9-51 (191)
223 cd06418 GH25_BacA-like BacA is 21.1 1.1E+02 0.0025 26.5 3.4 64 19-84 88-152 (212)
224 PF08532 Glyco_hydro_42M: Beta 20.9 1.6E+02 0.0034 25.2 4.3 28 18-45 28-55 (207)
225 PF05762 VWA_CoxE: VWA domain 20.8 2.5E+02 0.0054 24.3 5.6 54 20-83 134-188 (222)
226 smart00812 Alpha_L_fucos Alpha 20.5 91 0.002 29.8 2.9 27 54-81 76-102 (384)
227 COG3510 CmcI Cephalosporin hyd 20.3 1.3E+02 0.0029 25.9 3.5 49 271-319 162-210 (237)
228 PRK08091 ribulose-phosphate 3- 20.2 2.9E+02 0.0063 24.3 5.8 60 26-86 62-131 (228)
229 PRK11440 putative hydrolase; P 20.1 3.2E+02 0.0069 22.8 6.0 19 20-38 35-53 (188)
No 1
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=100.00 E-value=2.6e-87 Score=675.34 Aligned_cols=318 Identities=81% Similarity=1.481 Sum_probs=305.9
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeee
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
|||+||||||||||+|.++++|++++++||+++||||+||+|.+|+.++++|+||+++||||++|+++||++|+|+++++
T Consensus 182 mpP~WALGy~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~ii 261 (978)
T PLN02763 182 MPPKWALGYQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDGFRCFTFDKERFPDPKGLADDLHSIGFKAIWML 261 (978)
T ss_pred CCchHHhheeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcCCCceeECcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCCCCccC
Q 020492 81 DPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFK 160 (325)
Q Consensus 81 ~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~~~~~ 160 (325)
+|.|..+++|.+|+++.++++|+++++|++|++.+|||.++++|||||+|++||.++++++++.||||||+|+|||+.|+
T Consensus 262 dPgI~~d~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~ 341 (978)
T PLN02763 262 DPGIKAEEGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFK 341 (978)
T ss_pred cCCCccCCCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCcccc
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchH
Q 020492 161 SVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEH 240 (325)
Q Consensus 161 ~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~~s~W~~ 240 (325)
....++|.+..|.+....++..+|.++||+|++++++++||++++..+++|||++|||+|+|+|||+++|+||+.++|++
T Consensus 342 ~~~~t~P~~~~h~g~~~~gG~~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgfaGsQRYaa~WtGDn~SsWe~ 421 (978)
T PLN02763 342 TVTKTMPETNIHRGDEELGGVQNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGFIGSQRYAATWTGDNLSNWEH 421 (978)
T ss_pred CCcCCCCccccccCCcccCCccCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEccccCcCCCCceEECCCccCCHHH
Confidence 76678899888887655666667899999999999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHHHH
Q 020492 241 LHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIA 318 (325)
Q Consensus 241 L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~~ 318 (325)
|+.+|+++|++|+||+||||+|||||.+++++|||+||+|+|||+|+||+|+..++.++|||+|++++++++|++|++
T Consensus 422 L~~sI~~~LnlgLSGipf~G~DIGGF~G~~~~ELy~RW~Q~GaF~P~fR~Hs~~gt~~qEPW~fgeev~~i~R~ai~L 499 (978)
T PLN02763 422 LHMSIPMVLQLGLSGQPLSGPDIGGFAGDATPKLFGRWMGVGAMFPFARGHSEQGTIDHEPWSFGEECEEVCRLALKR 499 (978)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCCCCCCHHHHHHHHHHhhhhHHhhhccCCCCCCcCCeecChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988878999999999999999999975
No 2
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=100.00 E-value=6.9e-87 Score=621.80 Aligned_cols=316 Identities=58% Similarity=1.113 Sum_probs=297.2
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeee
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
|||+||||||+|+++|.++++|+++++++++++||+|+|++|.+|+.++++|+||+++||||++|+++||++|+|+++|+
T Consensus 5 l~P~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~ 84 (339)
T cd06604 5 LPPKWALGYQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTII 84 (339)
T ss_pred CCchHHHhHHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCCCCccC
Q 020492 81 DPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFK 160 (325)
Q Consensus 81 ~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~~~~~ 160 (325)
+|+|..++++.+|+++.++++|+++++|+++++.+|+|.++++|||||+|++||.++++++++.||||||+|+|||+.++
T Consensus 85 ~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~ 164 (339)
T cd06604 85 DPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFN 164 (339)
T ss_pred eCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccC
Confidence 99999876678999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCC-CCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCch
Q 020492 161 SVTK-TMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWE 239 (325)
Q Consensus 161 ~~~~-~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~~s~W~ 239 (325)
.... ++|.+..|.+... ...+.++||+|++++++++++++++..+++|+++++||+++|+|||+++|+||+.++|+
T Consensus 165 ~~~~~~~p~~~~~~~~~~---~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~ssW~ 241 (339)
T cd06604 165 TPGKTTMPRDAVHRLDGG---GGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAGIQRYAAVWTGDNRSSWE 241 (339)
T ss_pred CcccccCCccceeeCCCC---CCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccccccccccccCCcccCCHH
Confidence 5432 3787777654211 12578899999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHHHHh
Q 020492 240 HLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 319 (325)
Q Consensus 240 ~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~~~ 319 (325)
+|+.+|+++|++|++|+|+||+|||||.+++++|||+||+|+|||+|+||+|+..+..+++||.|++++.+++|++++|.
T Consensus 242 ~L~~~i~~~l~~~l~G~~~~g~DIGGf~~~~~~EL~~RW~Q~g~f~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lR 321 (339)
T cd06604 242 HLRLSIPMLLNLGLSGVPFVGADIGGFGGDPSPELLVRWMQLGAFFPFFRNHSAKGTRDQEPWAFGEEVEEIAREAIKLR 321 (339)
T ss_pred HHHHHHHHHHHHHhcCCcccccccCCCCCCCCHHHHHHHHHHHhccchhhccCCCCCCCCCCeecChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877789999999999999999999985
No 3
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=100.00 E-value=4.3e-86 Score=616.12 Aligned_cols=314 Identities=46% Similarity=0.902 Sum_probs=295.9
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeee
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
|||+||||||+||++|.++++|+++++++++++||||+|+||.+|+.++++|+||+++||||++|+++||++|+|+++|+
T Consensus 5 lpP~walG~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~ 84 (339)
T cd06603 5 LPPLFSLGYHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIV 84 (339)
T ss_pred CCchHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh---CCccEEEecCCCCC
Q 020492 81 DPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY---NGVDGIWNDMNEPA 157 (325)
Q Consensus 81 ~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~---~Gvdg~~~D~~e~~ 157 (325)
+|+|..++++.+|+++.++++++++++|+++++.+|+|.++++|||||+|++||.+++++++. .|++|+|+|++||+
T Consensus 85 ~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~ 164 (339)
T cd06603 85 DPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPS 164 (339)
T ss_pred cCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCcc
Confidence 999998766789999999999999999999999999999999999999999999999998774 68999999999999
Q ss_pred ccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcC-CCCcEEEEccccCCCCcceeeecCCCCC
Q 020492 158 VFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADK-DKRPFVLTRAGFIGSQRYAATWTGDNVS 236 (325)
Q Consensus 158 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~-~~r~~~~srs~~~G~qr~~~~w~GD~~s 236 (325)
.|+..+.++|.++.+.+. ..+.++||+|+++++++++|++++..+ ++|||+++||+++|+|||+++|+||+.|
T Consensus 165 ~f~~~~~~~p~d~~~~~~------~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s 238 (339)
T cd06603 165 VFNGPELTMPKDAIHYGG------IEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGSQRYAAIWTGDNTA 238 (339)
T ss_pred ccCCCCCcCCCcceecCC------CcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccccceeeeeCCCccC
Confidence 988766678877665431 247889999999999999999998754 6899999999999999999999999999
Q ss_pred CchHHHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHH
Q 020492 237 NWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI 316 (325)
Q Consensus 237 ~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~ 316 (325)
+|+.|+.+|+++|++|++|+|+||+|||||.+++++|||+||+|+|||+|+||+|+..+...++||.|++++++++|+++
T Consensus 239 ~W~~L~~~i~~~L~~~l~G~~~~g~DiGGf~~~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~ 318 (339)
T cd06603 239 TWEHLKISIPMLLSLNICGIPFCGADVGGFFGNPDEELLVRWYQAGAFYPFFRAHAHIDTKRREPWLFGEEYTSIIREAI 318 (339)
T ss_pred CHHHHHHHHHHHHHHhhcCccccCCccCCcCCCCCHHHHHHHHHHhhcCceeecCCCCCCCCCCCeecChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877778999999999999999999
Q ss_pred HHhh
Q 020492 317 IAFF 320 (325)
Q Consensus 317 ~~~~ 320 (325)
+|..
T Consensus 319 ~lRy 322 (339)
T cd06603 319 RLRY 322 (339)
T ss_pred HHHH
Confidence 9864
No 4
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=100.00 E-value=5.2e-86 Score=609.55 Aligned_cols=294 Identities=43% Similarity=0.877 Sum_probs=282.1
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeee
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
|||+||||||+|+++|.++++|+++++++++++||+|+|+||.+|++++++|+||+++||||++|+++||++|+|+++|+
T Consensus 5 lpP~walG~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~ 84 (317)
T cd06600 5 LPPMWALGYHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIV 84 (317)
T ss_pred CCchHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhh-hCCccEEEecCCCCCcc
Q 020492 81 DPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVF 159 (325)
Q Consensus 81 ~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~-~~Gvdg~~~D~~e~~~~ 159 (325)
+|+|..++.+..|.++.++++|+++.+|+++++.+|+|.++++|||||+|++||.+++++++ +.||||||+|+|||+.+
T Consensus 85 ~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~ 164 (317)
T cd06600 85 DPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDF 164 (317)
T ss_pred eccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccH
Confidence 99999876677899999999999999999999999999999999999999999999999887 79999999999998642
Q ss_pred CCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCch
Q 020492 160 KSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWE 239 (325)
Q Consensus 160 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~~s~W~ 239 (325)
.++||+|++++++++++++++..+++||++++||+++|+|||+++|+||+.|+|+
T Consensus 165 -------------------------~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~ 219 (317)
T cd06600 165 -------------------------EKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAGSQKYAAIWTGDNTASWD 219 (317)
T ss_pred -------------------------HHhcchhhHHHHHHHHHHHHHhcCCCCceEEEeccccccCCccceECCcccccHH
Confidence 3579999999999999999998788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHHHHh
Q 020492 240 HLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 319 (325)
Q Consensus 240 ~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~~~ 319 (325)
.|+.+|+++|++|++|+||+|+|||||.+++++|||+||+|+|||+|+||+|+..+..++|||.|++++.+++|+++++.
T Consensus 220 ~L~~~i~~~l~~gl~G~p~~g~DiGGf~~~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lR 299 (317)
T cd06600 220 DLKLSIPLVLGLSISGIPFVGCDIGGFQGDNSMELLVRWYQLGAFFPFYRSHKATDGKDTEPVFFPDYYKEKVREIVELR 299 (317)
T ss_pred HHHHHHHHHHHHHhcCCCccCcccCCCCCCCCHHHHHHHHHHhhcCceeeccCCCCCCCCCCeecCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876679999999999999999999985
No 5
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=3.2e-84 Score=598.01 Aligned_cols=301 Identities=33% Similarity=0.634 Sum_probs=278.1
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCC------CceeeeecCCCCCChHHHHHHHHHCCC
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMD------GFRCFTFDKERFPDPKSLAADLHLNGF 74 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~------~~~~f~~d~~~FPd~~~~~~~L~~~G~ 74 (325)
|||+||||||+|+++|.++++|+++++++++++||||+|++|++|++ .+++|+||+++||||++|+++||++|+
T Consensus 5 l~P~wa~G~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~ 84 (317)
T cd06598 5 LPPRWALGNWASRFGYRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGV 84 (317)
T ss_pred CCchHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCC
Confidence 79999999999999999999999999999999999999999999976 467999999999999999999999999
Q ss_pred EEEeeeCCccccCCCccccccccccceee-ecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecC
Q 020492 75 KAIWMLDPGIKHEDGYFVYDSGSKIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDM 153 (325)
Q Consensus 75 k~~~~~~P~i~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~ 153 (325)
|+++|++|+|..++ ..|+++.++++|+ ++.+|+++++.+|+|.+++||||||+|++||.++++++.+.||||||+|+
T Consensus 85 k~~~~v~P~v~~~~--~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~ 162 (317)
T cd06598 85 KTIVITEPFVLKNS--KNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDL 162 (317)
T ss_pred cEEEEEcCcccCCc--hhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecC
Confidence 99999999998765 4799999999955 55668899999999999999999999999999999999899999999999
Q ss_pred CCCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCccee-eecC
Q 020492 154 NEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTG 232 (325)
Q Consensus 154 ~e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~-~w~G 232 (325)
|||+.+ |.+..+.+ + .+.++||+|+++++++++|++++..+++|||+++||+++|+|||++ +|+|
T Consensus 163 ~Ep~~~-------~~~~~~~~-----g--~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~Gsqry~~~~WsG 228 (317)
T cd06598 163 GEPEVH-------PPDMCHHK-----G--KAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAGSQRYGVIPWSG 228 (317)
T ss_pred CCcccc-------CCccccCC-----C--cHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCccccCcCCccCC
Confidence 999864 33332221 1 3578999999999999999999888889999999999999999985 8999
Q ss_pred CCCCCchHHHHHHHHHHHccccCCCcccccCCCCCCC--CChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHH
Q 020492 233 DNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN--ATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLF 310 (325)
Q Consensus 233 D~~s~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~--~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~ 310 (325)
|+.++|++|+.+|+++|++|++|+|+||+|||||.++ +++|||+||+|+|+|+|+||+|+..+ .++|||.|++++++
T Consensus 229 D~~s~W~~L~~~i~~~l~~~l~G~~~~g~DIGGf~~~~~~~~EL~~RW~q~g~f~P~~R~H~~~~-~~~ePw~~~~~~~~ 307 (317)
T cd06598 229 DVGRTWDGLKSQPNAALQMSMSGIDYYHSDIGGFAGGDELDPELYTRWFQYGAFDPPFRPHAQNA-IPPEPVFYSIGTKN 307 (317)
T ss_pred CCcCCHHHHHHHHHHHHhhhccCCcccCCCcCCcCCCCCCCHHHHHHHHHhccCCcccccCCCCC-CCCCCCcCChHHHH
Confidence 9999999999999999999999999999999999997 89999999999999999999999975 47899999999999
Q ss_pred HHHHHHHH
Q 020492 311 CSSIVIIA 318 (325)
Q Consensus 311 ~~r~~~~~ 318 (325)
++|++|++
T Consensus 308 ~~r~~~~l 315 (317)
T cd06598 308 INRENIRL 315 (317)
T ss_pred HHHHHHHh
Confidence 99999986
No 6
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=100.00 E-value=1.1e-83 Score=598.29 Aligned_cols=294 Identities=45% Similarity=0.891 Sum_probs=280.8
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCCh--HHHHHHHHHCCCEEEe
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDP--KSLAADLHLNGFKAIW 78 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~--~~~~~~L~~~G~k~~~ 78 (325)
|||+||||||+|+++|.++++|+++++++++++||||+|++|++|++++++|+||+++|||| ++|+++||++|+|+++
T Consensus 5 lpP~walG~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~ 84 (339)
T cd06602 5 MPPYWALGFHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVP 84 (339)
T ss_pred CCchHHhhhHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred eeCCccccC---CCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCC
Q 020492 79 MLDPGIKHE---DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 79 ~~~P~i~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~ 154 (325)
|++|+|..+ +.+.+|+++.++++||++.+|+++++.+|+|.+.++|||||+|++||.++++++++ .||||||+|++
T Consensus 85 ~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 164 (339)
T cd06602 85 ILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMN 164 (339)
T ss_pred EEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 999999875 45788999999999999999999999999999999999999999999999998776 79999999999
Q ss_pred CCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCC
Q 020492 155 EPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDN 234 (325)
Q Consensus 155 e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~ 234 (325)
||..+ ..+||+|+++++++++|++++. +++|++++|||+++|+|||+++|+||+
T Consensus 165 Ep~~~-------------------------~~~hN~y~~~~~~~~~~~~~~~-~~~r~~~~sRs~~~G~qry~~~w~GD~ 218 (339)
T cd06602 165 EPSNF-------------------------YDVHNLYGLSEAIATYKALQSI-PGKRPFVISRSTFPGSGRYAGHWLGDN 218 (339)
T ss_pred CCchH-------------------------hhhcchhhHHHHHHHHHHHHhc-CCCCCEEEEecCcccccccceeECCCc
Confidence 98642 2479999999999999999987 789999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHH
Q 020492 235 VSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSI 314 (325)
Q Consensus 235 ~s~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~ 314 (325)
.|+|++|+.+|+++|++|++|+||||+|||||.+.+++|||+||+|+|+|+|+||+|+..+...++||.|++++++++|+
T Consensus 219 ~s~W~~L~~~i~~~l~~~~sG~~~~~~DigGf~g~~~~EL~~RW~Q~~~f~P~~r~H~~~~~~~~ePw~~~~~~~~~~r~ 298 (339)
T cd06602 219 ASTWEDLRYSIIGMLEFNLFGIPMVGADICGFNGDTTEELCARWMQLGAFYPFSRNHNDIGAIPQEPYVWGPSVADAARK 298 (339)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCCHHHHHHHHHHHhhCceeeccCCCCCCCcCCccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877799999999999999999
Q ss_pred HHHHhh
Q 020492 315 VIIAFF 320 (325)
Q Consensus 315 ~~~~~~ 320 (325)
+++|..
T Consensus 299 ~~~lRy 304 (339)
T cd06602 299 ALNIRY 304 (339)
T ss_pred HHHHHH
Confidence 999863
No 7
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=8.4e-83 Score=587.97 Aligned_cols=291 Identities=33% Similarity=0.668 Sum_probs=259.0
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeee
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
|||+||||||||||+|.++++|+++++++|+++||||+|++|++|+.++++|+||+++||||++|+++||++|+|+++++
T Consensus 5 mpP~WalG~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i 84 (332)
T cd06601 5 LKPRYALGFHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNI 84 (332)
T ss_pred CCchHHhhhhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCCHHHHHHHHHHCCCeEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCCCCccC
Q 020492 81 DPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFK 160 (325)
Q Consensus 81 ~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~~~~~ 160 (325)
+|+|.. +..|++.++++||+||+|++||.++++.+.+.|||++|+|+|||+.|+
T Consensus 85 ~P~i~~--------------------------g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~~~ 138 (332)
T cd06601 85 TPVISY--------------------------GGGLGSPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTTPAIMP 138 (332)
T ss_pred cCceec--------------------------CccCCCCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCCccccc
Confidence 999871 234566788999999999999999999999999999999999999886
Q ss_pred CCC--CCCCCCCccCCCC-C-CCcccccccccchhHHHHHHHHHHHHHhhc--CCCCcEEEEccccCCCCcceeeecCCC
Q 020492 161 SVT--KTMPESNIHRGDD-E-IGGCQNHSYYHNVYGMLMARSTYEGMKLAD--KDKRPFVLTRAGFIGSQRYAATWTGDN 234 (325)
Q Consensus 161 ~~~--~~~P~~~~~~~~~-~-~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~--~~~r~~~~srs~~~G~qr~~~~w~GD~ 234 (325)
... .++|.+..+.... . ..+...|.++||+|+++++++++|++++.. +++||||+|||+|+|+|||+++|+||+
T Consensus 139 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~Y~~~~~~a~~e~~~~~~~~~~~RpfiltRS~~aGsqrY~~~WsGDn 218 (332)
T cd06601 139 SYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNLYSYNLHKATWHGLNNLNARKNKRNFIIGRGSYAGMQRFAGLWTGDN 218 (332)
T ss_pred CCCccCCCCCcccccCCccccccCCchHHHHhhhhHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcCccCCcCceeCCCc
Confidence 421 3466654432110 0 001124788999999999999999998764 689999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHccccCCCcccccCCCCCCC----------CChhHHHHHHHhhcccccccccCCCC--CCCCCc-
Q 020492 235 VSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN----------ATPRLFGRWMGIGAMFPFCRGHTESD--AIDHEP- 301 (325)
Q Consensus 235 ~s~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~----------~~~eL~~RW~q~~af~P~~r~h~~~~--~~~~~P- 301 (325)
.|+|+.|+.+|+++|++||||+||||+|||||.+. +++|||+||+|+|||+|+||+|+..+ +..+||
T Consensus 219 ~stW~~L~~si~~~L~~~lsGip~~g~DIGGF~g~~~~~~~~~~~~~~EL~~RW~Q~GaF~P~~R~H~~~~~~~~~~ep~ 298 (332)
T cd06601 219 SSSWDFLQINIAQVLNLGMSGLPIAGSDIGGFTSYDGENSIQRTWCNPELLIRWYQAGFLLPWFRNHYDRKIRQKFQEPA 298 (332)
T ss_pred ccCHHHHHHHHHHHHHhhhcCCCccCCccCCcCCCCcccccccCCCCHHHHHHHHHHhcCCceeccCCCCccCcccCCcc
Confidence 99999999999999999999999999999999986 57999999999999999999999754 467788
Q ss_pred ----------------cccChhhHHHHHHHHHH
Q 020492 302 ----------------WSFGEEVLFCSSIVIIA 318 (325)
Q Consensus 302 ----------------w~~~~~~~~~~r~~~~~ 318 (325)
|.+ +++++|+|++|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~i~~ 330 (332)
T cd06601 299 KYFQEPYAHLIDYEQLYLY-ENVPEICRKYVEL 330 (332)
T ss_pred ccccccccccccccccccc-HHHHHHHHHHHHh
Confidence 555 9999999999986
No 8
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=1.4e-82 Score=586.36 Aligned_cols=298 Identities=31% Similarity=0.607 Sum_probs=279.6
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCce--eeeecCCCCCChHHHHHHHHHCCCEEEe
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFR--CFTFDKERFPDPKSLAADLHLNGFKAIW 78 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~--~f~~d~~~FPd~~~~~~~L~~~G~k~~~ 78 (325)
|||+||||||+|+++|.++++|+++++++++++||||+++||++|+.+.+ +|+||+++|||+++|+++||++|+|+++
T Consensus 5 l~P~wa~G~~~~~~~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~ 84 (308)
T cd06593 5 LPPAWSFGLWLSRSFYYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCL 84 (308)
T ss_pred CCchHHHHHHHHcccCCCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEE
Confidence 79999999999999999999999999999999999999999999998765 9999999999999999999999999999
Q ss_pred eeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCCCCc
Q 020492 79 MLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAV 158 (325)
Q Consensus 79 ~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~~~ 158 (325)
|++|+|..++. +|+++.++++|+++.+|+++.+.+|+|.++++|||||+|++||.++++++.+.||||||+|++|+.
T Consensus 85 ~~~P~i~~~~~--~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~- 161 (308)
T cd06593 85 WINPYIAQKSP--LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERI- 161 (308)
T ss_pred EecCCCCCCch--hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCC-
Confidence 99999987664 899999999999999999999999999999999999999999999999999999999999999973
Q ss_pred cCCCCCCCCCCCc-cCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCC
Q 020492 159 FKSVTKTMPESNI-HRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSN 237 (325)
Q Consensus 159 ~~~~~~~~P~~~~-~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~~s~ 237 (325)
|.+.. +.|. .+.++||+|+++++++++|++++..+.+|+++++||+++|+|||+++|+||+.++
T Consensus 162 --------p~~~~~~~g~-------~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gsqry~~~w~GD~~s~ 226 (308)
T cd06593 162 --------PTDVVYYDGS-------DGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGSQKYPVHWGGDCEST 226 (308)
T ss_pred --------CccccccCCC-------CcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCccccccCCCEECCCcccC
Confidence 44433 2221 3578999999999999999999988788999999999999999999999999999
Q ss_pred chHHHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHHH
Q 020492 238 WEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVII 317 (325)
Q Consensus 238 W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~ 317 (325)
|++|+.+|+++|++|++|+|++|+|||||.+++++|||+||+|+|||+|+||+|+.. .++||.|++++++++|++++
T Consensus 227 w~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~EL~~RW~q~gaf~P~~r~h~~~---~~~Pw~~~~~~~~~~r~~~~ 303 (308)
T cd06593 227 FEGMAESLRGGLSLGLSGFGFWSHDIGGFEGTPPPDLYKRWAQFGLLSSHSRLHGSG---YREPWEYGEEAVDVVRKFAK 303 (308)
T ss_pred HHHHHHHHHHHHhccccCCceecCccCCcCCCCCHHHHHHHHHhCcCCcccccCCCC---CCCCcccChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999874 89999999999999999998
Q ss_pred Hh
Q 020492 318 AF 319 (325)
Q Consensus 318 ~~ 319 (325)
+-
T Consensus 304 lR 305 (308)
T cd06593 304 LK 305 (308)
T ss_pred HH
Confidence 74
No 9
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=1.7e-81 Score=580.34 Aligned_cols=300 Identities=32% Similarity=0.544 Sum_probs=269.2
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCce--eeeecCCCCCChHHHHHHHHHCCCEEEe
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFR--CFTFDKERFPDPKSLAADLHLNGFKAIW 78 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~--~f~~d~~~FPd~~~~~~~L~~~G~k~~~ 78 (325)
|||+||||||+|+++|.++++|+++++++++++||||+|++|.+|+.+.+ +|+||+++||||++|+++||++|+|+++
T Consensus 5 m~P~walG~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~ 84 (319)
T cd06591 5 MMPKWAYGFWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMI 84 (319)
T ss_pred CCchHHHHHHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEE
Confidence 89999999999999999999999999999999999999999999988777 9999999999999999999999999999
Q ss_pred eeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHh-hhhCCccEEEecCCCCC
Q 020492 79 MLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPA 157 (325)
Q Consensus 79 ~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~-~~~~Gvdg~~~D~~e~~ 157 (325)
+++|+|..++ ..|++++++++++++++|.++. .+|+|.++++|||||+|++||.+++++ +.+.||||||+|+|||+
T Consensus 85 ~i~P~v~~~~--~~y~e~~~~g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~ 161 (319)
T cd06591 85 SIWPTFGPET--ENYKEMDEKGYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPE 161 (319)
T ss_pred EecCCcCCCC--hhHHHHHHCCEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 9999998754 5899999999999999988876 899999999999999999999888765 55799999999999998
Q ss_pred ccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCccee-eecCCCCC
Q 020492 158 VFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVS 236 (325)
Q Consensus 158 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~-~w~GD~~s 236 (325)
.++.... ..+... .. ..+.++||+|+++++|+++|++++..+++|||+++||+++|+|||++ +|+||+.|
T Consensus 162 ~~~~~~~--~~~~~~----~~---~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~Gsqry~~~~W~GD~~s 232 (319)
T cd06591 162 YSVYDFG--LDNYRY----HL---GPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAGSQRYGALVWSGDIDS 232 (319)
T ss_pred ccCCccc--ccCccc----CC---CCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccccccccccCceeCCCccc
Confidence 7542110 000000 01 13578999999999999999999887789999999999999999985 99999999
Q ss_pred CchHHHHHHHHHHHccccCCCcccccCCCCCCCCC---------hhHHHHHHHhhcccccccccCCCCC-CCCCccccCh
Q 020492 237 NWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNAT---------PRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGE 306 (325)
Q Consensus 237 ~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~---------~eL~~RW~q~~af~P~~r~h~~~~~-~~~~Pw~~~~ 306 (325)
+|++|+.+|+.+|++|++|+|++|+|||||.++.+ +|||+||+|+|||+|+||+|+.... ..+|||.|++
T Consensus 233 ~w~~L~~~i~~~l~~glsG~~~~g~DiGGF~~~~~~~~~~~~~~~EL~~RW~q~gaf~P~~R~H~~~~~~~~~ePw~~g~ 312 (319)
T cd06591 233 SWETLRRQIAAGLNMGLSGIPWWTTDIGGFFVGNPPAGLDDPEYRELYVRWFQFGAFCPVMRSHGTREPREINEFWSYGE 312 (319)
T ss_pred cHHHHHHHHHHHHHHhhcCCccccCCcCCcCCCCccccccCCccHHHHHHHHHHhcCccccccCCCCCCCCCCcCcCCCh
Confidence 99999999999999999999999999999998755 8999999999999999999998653 3579999999
Q ss_pred hhHHHH
Q 020492 307 EVLFCS 312 (325)
Q Consensus 307 ~~~~~~ 312 (325)
++++|+
T Consensus 313 e~~~~~ 318 (319)
T cd06591 313 EVYDIL 318 (319)
T ss_pred HHHHhh
Confidence 999875
No 10
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=4.6e-81 Score=576.94 Aligned_cols=299 Identities=35% Similarity=0.652 Sum_probs=265.6
Q ss_pred CCCccchhhhhhcCCCCC-----HHHHHHHHHHHHhcCCCceEEEEecccCCC----ceeeeecCCCCCChHHHHHHHHH
Q 020492 1 MPPKWSLGYHQCRWSYDS-----DKRVREICRTFREKGIPCDVIWMDIDYMDG----FRCFTFDKERFPDPKSLAADLHL 71 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~-----~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~----~~~f~~d~~~FPd~~~~~~~L~~ 71 (325)
|||+||||||+|+++|.+ +++|+++++++|+++||+|+|+||++|+.. +.+|+||+++||||++|+++||+
T Consensus 5 mpP~walG~~~sr~~Y~~~~~~~q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~ 84 (317)
T cd06599 5 MVPRWSLGYSGSTMYYTELDPDAQEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHE 84 (317)
T ss_pred CCchHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHH
Confidence 899999999999999988 899999999999999999999999999864 56899999999999999999999
Q ss_pred CCCEEEeeeCCccccCCCccccccccccceeeecCCCC-ceeeeecCCCccCCCCCChHHHHHHHHHHH-hhhhCCccEE
Q 020492 72 NGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGT-PFIGEVWPGPCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGI 149 (325)
Q Consensus 72 ~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~-~~~~~Gvdg~ 149 (325)
+|+|+++|++|+|..++ ..|+++.++++||++.+|. ++++.+|+|.++++|||||+|++||.++++ .+.+.|||||
T Consensus 85 ~g~k~~~~i~P~i~~~~--~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~ 162 (317)
T cd06599 85 RGIRLAPNIKPGLLQDH--PRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDST 162 (317)
T ss_pred CCCEEEEEeCCcccCCC--HHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEE
Confidence 99999999999998765 4799999999999998765 688999999999999999999999999995 5667999999
Q ss_pred EecCCCCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceee
Q 020492 150 WNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAAT 229 (325)
Q Consensus 150 ~~D~~e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~ 229 (325)
|+|+|||+.+ +.+..+... +.++ .+..+||+|++++++++|+++++..+++|||+++||+++|+|||+++
T Consensus 163 w~D~~E~~~~-------~~~~~~~~~-g~~~--~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G~qry~~~ 232 (317)
T cd06599 163 WNDNNEYEIW-------DDDAVCDGF-GKPG--TIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAGIQRYAQT 232 (317)
T ss_pred EecCCCCccC-------CCcceecCC-CCcc--chhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCcccccCCcCe
Confidence 9999998643 222222111 1111 23458999999999999999998878899999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHHHHccccCCCcccccCCCCCCC-CChhHHHHHHHhhcccccccccCCCC-CCCCCccccChh
Q 020492 230 WTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN-ATPRLFGRWMGIGAMFPFCRGHTESD-AIDHEPWSFGEE 307 (325)
Q Consensus 230 w~GD~~s~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~-~~~eL~~RW~q~~af~P~~r~h~~~~-~~~~~Pw~~~~~ 307 (325)
|+||+.++|++|+.+|+.+|++|++|+||||+|||||.++ +++|||+||+|+|+|+|+||+|+..+ ...||||.|+ +
T Consensus 233 WsGD~~s~W~~L~~~i~~~L~~glsG~~~~g~DIGGF~~~~~~~ELy~RW~Q~g~F~P~~R~H~~~~~~~~~ePw~f~-~ 311 (317)
T cd06599 233 WSGDNRTSWKTLRYNIAMGLGMGLSGVANIGHDIGGFAGPAPEPELFVRWVQNGIFQPRFCIHSWNTDNTVTEPWMYP-E 311 (317)
T ss_pred eCCCcccCHHHHHHHHHHHHhhhccCCcccccccCccCCCCCCHHHHHHHHHHccCCHhhhcccCCCCCCCcCCeecc-c
Confidence 9999999999999999999999999999999999999986 79999999999999999999999764 3689999995 5
Q ss_pred hHHHH
Q 020492 308 VLFCS 312 (325)
Q Consensus 308 ~~~~~ 312 (325)
+.+++
T Consensus 312 ~~~~~ 316 (317)
T cd06599 312 VTDYI 316 (317)
T ss_pred chhhc
Confidence 55544
No 11
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-81 Score=590.77 Aligned_cols=312 Identities=44% Similarity=0.861 Sum_probs=297.5
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeee
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
|||.+|+|||||||.|.++++|.++-++|.+++||+|+||+|..+.++.+.||||+.+||+|+.|+++|.++|.|++.+|
T Consensus 353 LPplFsiGYHQcRWNY~DE~DV~~Vd~~FDehdiP~DviWLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa~kgRklV~Iv 432 (915)
T KOG1066|consen 353 LPPLFSIGYHQCRWNYNDEEDVLTVDQGFDEHDIPYDVIWLDIEHTDGKRYFTWDKHKFPNPKDMLKKLASKGRKLVTIV 432 (915)
T ss_pred CCchhhcchhhccccccchhhhhhhhcCccccCCccceEEEeeeecCCceeEeeccccCCCHHHHHHHHHhcCCceEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCc---cEEEecCCCCC
Q 020492 81 DPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGV---DGIWNDMNEPA 157 (325)
Q Consensus 81 ~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gv---dg~~~D~~e~~ 157 (325)
+|.|+.+++|++++++.+.+++||+.+|+.|.|.||||.+.+|||.||++|+||+++..--.-.|. -.+|+|||||+
T Consensus 433 DPHIKkD~~Y~v~ke~~~~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fafd~y~g~t~nl~iWNDMNEPS 512 (915)
T KOG1066|consen 433 DPHIKKDDGYFVHKEAKDKGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFAFDRYEGSTPNLFIWNDMNEPS 512 (915)
T ss_pred CcccccCCCeEEhHHhhhCCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcccccccCCCCceEEeccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999862111343 36899999999
Q ss_pred ccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcC-CCCcEEEEccccCCCCcceeeecCCCCC
Q 020492 158 VFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADK-DKRPFVLTRAGFIGSQRYAATWTGDNVS 236 (325)
Q Consensus 158 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~-~~r~~~~srs~~~G~qr~~~~w~GD~~s 236 (325)
.|...+.++|.++.|.|.. .|+++||+||++...++++||.++.+ ..|||++|||.|+|+||++++|+|||.+
T Consensus 513 VFnGPEiTm~kDaiHyGg~------EHRdVHNiYG~~~h~aT~dGl~~R~~g~~RPFvLsRafFaGsQR~aAiWTGDN~A 586 (915)
T KOG1066|consen 513 VFNGPEITMPKDAIHYGGW------EHRDVHNIYGLMVHMATFDGLIARSGGKERPFVLSRAFFAGSQRTAAIWTGDNTA 586 (915)
T ss_pred ccCCCccccchhhhhcCCe------eechhhhhhceeeeehhhhhhhhhcCCCcCceEEEeccccCccceeeeeccCCcc
Confidence 9999999999999998642 48999999999999999999998765 6899999999999999999999999999
Q ss_pred CchHHHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHH
Q 020492 237 NWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI 316 (325)
Q Consensus 237 ~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~ 316 (325)
+|+.||.+|+++|+.|++|+||.|.|||||+|+|++||++||+|.|||.|+||.|...++..||||.|++...+++|+||
T Consensus 587 ~W~HLkiSiPM~Lsl~iaG~~F~GADVgGFFgNPd~ELlvRWYQ~gaf~PFFRaHAHiDTkRREPWLf~e~~~~iiRdal 666 (915)
T KOG1066|consen 587 DWDHLKISIPMVLSLGIAGMPFVGADVGGFFGNPDPELLVRWYQTGAFQPFFRAHAHIDTKRREPWLFPEQTTQIIRDAL 666 (915)
T ss_pred chhhheeecceeEecccccceecccccccccCCCCHHHHHHHHHhcccchhhhhhccccccccCccccCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 020492 317 IA 318 (325)
Q Consensus 317 ~~ 318 (325)
++
T Consensus 667 ~~ 668 (915)
T KOG1066|consen 667 RT 668 (915)
T ss_pred HH
Confidence 86
No 12
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=8.8e-79 Score=565.33 Aligned_cols=293 Identities=26% Similarity=0.469 Sum_probs=257.6
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCC----------------C-----ceeeeecC-CC
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMD----------------G-----FRCFTFDK-ER 58 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----------------~-----~~~f~~d~-~~ 58 (325)
|||+|||||||||++|.++++|+++++++++++||||+|+|| +|+. + +.+++||+ ++
T Consensus 5 lpP~walG~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD-~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~ 83 (340)
T cd06597 5 LLPKWAFGLWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIE-QWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGR 83 (340)
T ss_pred CCchHHhhhhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEe-cccCcceeeeeccchhcccccCCcceecccccCcccc
Confidence 799999999999999999999999999999999999999998 5653 1 34556664 79
Q ss_pred CCChHHHHHHHHHCCCEEEeeeCCccccCCC-----ccccccccccceeeecCCCCceee-eecCCCccCCCCCChHHHH
Q 020492 59 FPDPKSLAADLHLNGFKAIWMLDPGIKHEDG-----YFVYDSGSKIDVWIQKADGTPFIG-EVWPGPCVFPDYTQSKVRS 132 (325)
Q Consensus 59 FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~-~~w~g~~~~~Df~~p~a~~ 132 (325)
||||++||++||++|+|+++|++|+|..... ...|+++.++++|+++.+|+++++ .+|+|.++++|||||+|++
T Consensus 84 FPdp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~ 163 (340)
T cd06597 84 WPNPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQ 163 (340)
T ss_pred CCCHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHH
Confidence 9999999999999999999999999975321 124668999999999999998875 6899999999999999999
Q ss_pred HHHHHHHhhh-hCCccEEEecCCCCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCC
Q 020492 133 WWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKR 211 (325)
Q Consensus 133 w~~~~~~~~~-~~Gvdg~~~D~~e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r 211 (325)
||.+++++++ +.||||||+|++|+. + +.+..+.. + ..+..+||+|+++++++++|++++. ++|
T Consensus 164 Ww~~~~~~~~~~~Gidg~w~D~~E~~-~-------~~~~~~~~-----g-~~~~~~hN~y~~~~~~~~~e~~~~~--~~r 227 (340)
T cd06597 164 WWMEKRRYLVDELGIDGFKTDGGEHV-W-------GRDLHFRD-----G-RRGDEMRNTYPNHYVRAYNDFLRRA--KKD 227 (340)
T ss_pred HHHHHHHHHHHhcCCcEEEecCCCcc-C-------CCCceecC-----C-CcHHHhhcccHHHHHHHHHHHHHhc--cCC
Confidence 9999999988 589999999999975 2 12222211 1 1356789999999999999998775 789
Q ss_pred cEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHccccCCCcccccCCCCCCC-CChhHHHHHHHhhcccccccc
Q 020492 212 PFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN-ATPRLFGRWMGIGAMFPFCRG 290 (325)
Q Consensus 212 ~~~~srs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~-~~~eL~~RW~q~~af~P~~r~ 290 (325)
+|+++||+++|+|||+++|+||+.|+|++|+.+|+++|++|++|+||+|+|||||.++ +++|||+||+|+|||+|+||+
T Consensus 228 ~filtRs~~~Gsqry~~~WsGD~~s~W~~L~~~i~~~L~~glsG~~~~g~DIgGF~g~~~~~EL~~RW~Q~g~F~P~~R~ 307 (340)
T cd06597 228 GVTFSRAGYTGAQAHGIFWAGDENSTFGAFRWSVFAGLSASASGIPYWGWDLAGFTGDVPTAELYVRSTAMAAFVPIMQY 307 (340)
T ss_pred cEEEEecccCccCCCcceecCCCCCCHHHHHHHHHHHHHHhhcCCCcCCCccCCcCCCCCCHHHHHHHHHHhhcchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999987 799999999999999999999
Q ss_pred cCCCCC-----CCCCccccChhhHH
Q 020492 291 HTESDA-----IDHEPWSFGEEVLF 310 (325)
Q Consensus 291 h~~~~~-----~~~~Pw~~~~~~~~ 310 (325)
|+..+. ..||||.|++++.+
T Consensus 308 H~~~~~~~~~~~~~epw~~~~~~~~ 332 (340)
T cd06597 308 HSEFNGHSSPNEDRTPWNIAERTGE 332 (340)
T ss_pred ccCCCCCCcCcCCccCCcccCcCCC
Confidence 998643 58999999987654
No 13
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=100.00 E-value=1.2e-78 Score=559.68 Aligned_cols=293 Identities=25% Similarity=0.492 Sum_probs=264.3
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCC---------ceeeeecCCCCCChHHHHHHHHH
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDG---------FRCFTFDKERFPDPKSLAADLHL 71 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~---------~~~f~~d~~~FPd~~~~~~~L~~ 71 (325)
|||+||||+|+|++.+ ++++|+++++++++++||||+|++| +|+.. +.+|+||+++||||++|+++||+
T Consensus 5 ~~P~wa~G~~~~~~~~-s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~ 82 (317)
T cd06594 5 ELPDWAYGGAILGLQG-GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKA 82 (317)
T ss_pred CCchhhhCcEEeeeeC-CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeeeeEEChhhCCCHHHHHHHHHH
Confidence 7999999999999855 9999999999999999999999999 78642 23689999999999999999999
Q ss_pred CCCEEEeeeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhh-hhCCccEEE
Q 020492 72 NGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF-IYNGVDGIW 150 (325)
Q Consensus 72 ~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~-~~~Gvdg~~ 150 (325)
+|+|+++|++|+|..++.. .|+++.++++|+++++|+++++.+|+|.++++|||||+|++||.++++++ .+.||||||
T Consensus 83 ~G~~~~~~i~P~v~~~~~~-~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w 161 (317)
T cd06594 83 RGIRVLTYINPYLADDGPL-YYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWM 161 (317)
T ss_pred CCCEEEEEecCceecCCch-hHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEE
Confidence 9999999999999886542 26999999999999999999999999999999999999999999999987 679999999
Q ss_pred ecCCCCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCccee-e
Q 020492 151 NDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-T 229 (325)
Q Consensus 151 ~D~~e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~-~ 229 (325)
+|+||+. |.+..+.. | ..+.++||+|++++++++++++++..+++|||++|||+|+|+|||++ +
T Consensus 162 ~D~~E~~---------p~d~~~~~-----g-~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~Gsqry~~~~ 226 (317)
T cd06594 162 ADFGEYL---------PFDAVLHS-----G-EDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTGSQKYSTLF 226 (317)
T ss_pred ecCCCCC---------CCcceecC-----C-CCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEcccccccccccccc
Confidence 9999963 33333221 1 13678999999999999999999887789999999999999999985 8
Q ss_pred ecCCCCCCch---HHHHHHHHHHHccccCCCcccccCCCCCC----CCChhHHHHHHHhhcccccccccCCCCCCCCCcc
Q 020492 230 WTGDNVSNWE---HLHMSISMVLQLGLSGQPFSGPDIGGFDG----NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPW 302 (325)
Q Consensus 230 w~GD~~s~W~---~L~~~i~~~l~~~l~G~~~~g~DigGf~~----~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw 302 (325)
|+||+.++|+ +|+.+|+++|++|++|+||+|+|||||.+ .+++|||+||+|+|||+|+||+|+......++||
T Consensus 227 WsGD~~s~W~~~~~L~~~i~~~L~~~lsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~~~~~~~~~~~ 306 (317)
T cd06594 227 WAGDQMVSWDAHDGLKSVVPGALSSGLSGYALHHSDIGGYTSLNGYVRTEELLLRWAEMAAFTPVMRTHEGNRPDDNWQF 306 (317)
T ss_pred cCCCCCCCCcCcccHHHHHHHHhhccccCCCcccCccCCCcCCCCCCCCHHHHHHHHHHhccccceecCCCCCCCCCccc
Confidence 9999999998 79999999999999999999999999975 4799999999999999999999998877789999
Q ss_pred ccChhhHHH
Q 020492 303 SFGEEVLFC 311 (325)
Q Consensus 303 ~~~~~~~~~ 311 (325)
.+++++.+.
T Consensus 307 ~~~~~~~~~ 315 (317)
T cd06594 307 YSDDETLRH 315 (317)
T ss_pred ccChHHHHh
Confidence 998887654
No 14
>PRK10658 putative alpha-glucosidase; Provisional
Probab=100.00 E-value=2.2e-78 Score=602.05 Aligned_cols=300 Identities=25% Similarity=0.501 Sum_probs=277.4
Q ss_pred CCCccchhhhhhcC-CC-CCHHHHHHHHHHHHhcCCCceEEEEecccCCC--ceeeeecCCCCCChHHHHHHHHHCCCEE
Q 020492 1 MPPKWSLGYHQCRW-SY-DSDKRVREICRTFREKGIPCDVIWMDIDYMDG--FRCFTFDKERFPDPKSLAADLHLNGFKA 76 (325)
Q Consensus 1 lpP~walG~~~s~~-~y-~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~~~f~~d~~~FPd~~~~~~~L~~~G~k~ 76 (325)
|||+||||||+|+. .+ .++++|++++++|++++||||+|++|++|+++ +.+|+||+++||||++|+++||++|+|+
T Consensus 262 lpP~WalG~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~ 341 (665)
T PRK10658 262 LPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKI 341 (665)
T ss_pred CCchhhhheeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEE
Confidence 79999999999983 32 36889999999999999999999999999986 5799999999999999999999999999
Q ss_pred EeeeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCCC
Q 020492 77 IWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEP 156 (325)
Q Consensus 77 ~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~ 156 (325)
++|++|+|..++ .+|++++++++|+++++|+++++..|+|.++++|||||+|++||.++++++++.||||||+|++|+
T Consensus 342 ~~~i~P~i~~~s--~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~ 419 (665)
T PRK10658 342 CVWINPYIAQKS--PLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGER 419 (665)
T ss_pred EEeccCCcCCCc--hHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCce
Confidence 999999998754 589999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCC
Q 020492 157 AVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVS 236 (325)
Q Consensus 157 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~~s 236 (325)
+|.+..+.. | ..+..+||+|++++++++||++++..+.+|+++++||+++|+|||+++|+||+.|
T Consensus 420 ---------~p~d~~~~~-----G-~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~i~tRs~~aGsQry~~~WsGD~~s 484 (665)
T PRK10658 420 ---------IPTDVVWFD-----G-SDPQKMHNYYTYLYNKTVFDVLKETRGEGEAVLFARSATVGGQQFPVHWGGDCYS 484 (665)
T ss_pred ---------eeccceecC-----C-CcHHHhcchhHHHHHHHHHHHHHHhcCCCceEEEEecccCCCCCCCCEECCCCCC
Confidence 344443321 1 1357899999999999999999998778999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHH
Q 020492 237 NWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI 316 (325)
Q Consensus 237 ~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~ 316 (325)
+|++|+.+|+++|++|+||+||||+|||||.+.+++|||+||+|+|+|+|+||+|+.. ..|+||.|++++.+++|+++
T Consensus 485 tw~~l~~si~~~Ls~glsG~~~~g~DIGGF~g~~~~ELy~RW~Q~g~f~P~~R~Hg~~--~~~ePW~fg~e~~~i~r~~i 562 (665)
T PRK10658 485 NYESMAESLRGGLSLGLSGFGFWSHDIGGFENTATADVYKRWCAFGLLSSHSRLHGSK--SYRVPWAYDEEAVDVVRFFT 562 (665)
T ss_pred CHHHHHHHHHHHHHHHhcCCccccCccCCCCCCCCHHHHHHHHHhcccChhhcccCCC--CCcCCcccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999875 46999999999999999999
Q ss_pred HHh
Q 020492 317 IAF 319 (325)
Q Consensus 317 ~~~ 319 (325)
+|-
T Consensus 563 ~lR 565 (665)
T PRK10658 563 KLK 565 (665)
T ss_pred HHH
Confidence 964
No 15
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-77 Score=599.31 Aligned_cols=302 Identities=43% Similarity=0.844 Sum_probs=283.4
Q ss_pred CCCccchh-hhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecc-cCCCceeeeecCCCCCChHHHHHHHHHCCCEEEe
Q 020492 1 MPPKWSLG-YHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDID-YMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIW 78 (325)
Q Consensus 1 lpP~walG-~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~-w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~ 78 (325)
|||+|||| +|+|++.|.++++|.++++.+++++||+|+|++|++ |.+.+++|+||+.+||||++|+++||++|+|+++
T Consensus 260 l~P~Wa~G~~~~~~~~~~~e~~v~~~i~~~~~~~IP~d~~~lD~~~~~~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~ 339 (772)
T COG1501 260 LPPKWALGWLWTSRYTYYDEDEVLEFIDEMRERDIPLDVFVLDIDFWMDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIV 339 (772)
T ss_pred CCCceecCCCceeccccccHHHHHHHHhhcccccCcceEEEEeehhhhccccceEECcccCCCHHHHHHHHHhcCceEEE
Confidence 79999999 999999999999999999999999999999999997 9889999999999999999999999999999999
Q ss_pred eeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHH-HHHhhhhCCccEEEecCCCCC
Q 020492 79 MLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS-LVKDFIYNGVDGIWNDMNEPA 157 (325)
Q Consensus 79 ~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~-~~~~~~~~Gvdg~~~D~~e~~ 157 (325)
+++|.|..+. ++|+++.++|+|+++++|.++.+..|++.++++|||||+|++||.+ ..+.+.+.||||||+|+|||.
T Consensus 340 ~i~P~i~~d~--~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 340 IINPYIKQDS--PLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPE 417 (772)
T ss_pred EeccccccCC--chHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCc
Confidence 9999999987 5899999999999999999999999999999999999999999994 556788999999999999998
Q ss_pred ccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCC
Q 020492 158 VFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSN 237 (325)
Q Consensus 158 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~~s~ 237 (325)
.++.. ..+.+ ..+..+||+|++++++++|+++++..+++|||+++||+++|+|||+++|+||+.++
T Consensus 418 ~~~~~-------~~~~g-------~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~Q~~~~~WsGD~~s~ 483 (772)
T COG1501 418 PFDGD-------GFGNG-------IDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGYAGSQRYAAHWSGDNRSS 483 (772)
T ss_pred ccccc-------ccccc-------cCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEecccccceeccceeCCccccc
Confidence 76531 11111 24678999999999999999999988899999999999999999999999999999
Q ss_pred chHHHHHHHHHHHccccCCCcccccCCCCCC--CCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHH
Q 020492 238 WEHLHMSISMVLQLGLSGQPFSGPDIGGFDG--NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIV 315 (325)
Q Consensus 238 W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~--~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~ 315 (325)
|++|+.+|+++|++|+||+|+||+|||||.| .+++|||+||+|+|+|+|+||+|+. .+.+|+||.|++++.+++|++
T Consensus 484 wd~l~~si~~~Ls~~~sGi~~wg~DiGGF~g~~~~~~EL~~RW~q~g~F~P~~R~H~~-d~~~rePW~~~e~~~~i~r~~ 562 (772)
T COG1501 484 WDSLRESIPAGLSLSLSGIPFWGHDIGGFTGGDDPTAELYIRWYQFGAFSPIFRLHGN-DNIPREPWAFGEETEEIVREY 562 (772)
T ss_pred hHHHHhhHHhhhchhccCCccccccccccCCCCCCCHHHHHHHHHHHhcCchhhhhCC-CCCCCCCccCChhHHHHHHHH
Confidence 9999999999999999999999999999999 6799999999999999999999998 457999999999999999999
Q ss_pred HHHh
Q 020492 316 IIAF 319 (325)
Q Consensus 316 ~~~~ 319 (325)
|++.
T Consensus 563 ~~lR 566 (772)
T COG1501 563 IQLR 566 (772)
T ss_pred HHHH
Confidence 9875
No 16
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=100.00 E-value=2.4e-76 Score=570.80 Aligned_cols=313 Identities=42% Similarity=0.893 Sum_probs=274.8
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeee
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
|||+||||+|+|+++|.++++|+++++++++++||+|++++|++|+.+.++|+||+++|||+++|++.||++|+|+++|+
T Consensus 24 ~pP~walG~~~~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~ 103 (441)
T PF01055_consen 24 LPPRWALGFWQSRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFPDPKQMIDELHDQGIKVVLWV 103 (441)
T ss_dssp ---GGGGSEEEEESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEE
T ss_pred CCchhhhceEeecCcCCCHHHHHHHHHHHHHcCCCccceeccccccccccccccccccccchHHHHHhHhhCCcEEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCC-ccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhC-CccEEEecCCCCCc
Q 020492 81 DPGIKHEDG-YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN-GVDGIWNDMNEPAV 158 (325)
Q Consensus 81 ~P~i~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~-Gvdg~~~D~~e~~~ 158 (325)
+|+|..++. +..|+++.++++++++++|+++++.+|+|.++++||+||++++||.++++++++. ||||||+|++||..
T Consensus 104 ~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~ 183 (441)
T PF01055_consen 104 HPFVSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSS 183 (441)
T ss_dssp ESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBS
T ss_pred ecccCCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCccc
Confidence 999998876 6789999999999999999999999999999999999999999999999999986 99999999999987
Q ss_pred cCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCc
Q 020492 159 FKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNW 238 (325)
Q Consensus 159 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~~s~W 238 (325)
+. ...++|.+..+.+. ..+..+||+|++++++++++++++..+++|+++++||+++|+|||+++|+||+.++|
T Consensus 184 ~~-~~~~~~~~~~~~~~------~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~w 256 (441)
T PF01055_consen 184 FD-SNNTLPEDAVHHDG------YSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAGSQRYGGHWSGDNSSSW 256 (441)
T ss_dssp ST-TTBSBCTTEECTTE------CEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETTGGGTCEEEECSSBSSH
T ss_pred cc-ccccCcccceecCC------CCchheeccccccchhhhhhhhhhccCCCCcceeecccCCCCCccceeecccccccH
Confidence 64 33345665554321 146789999999999999999998778899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHHHH
Q 020492 239 EHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIA 318 (325)
Q Consensus 239 ~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~~ 318 (325)
++|+.+|.++|++|++|+|++|+|||||.+.+++|||+||+|+|+|+|+||+|+..+...++||.|++++++++|+++++
T Consensus 257 ~~L~~~i~~~l~~~~~G~~~~g~DigG~~~~~~~eL~~RW~q~~~f~p~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~l 336 (441)
T PF01055_consen 257 DGLRSSIPAMLNMGLSGYPFWGSDIGGFSGDPDEELYIRWYQFGAFSPLFRNHGNKPSNPREPWSFGDEAEDIFRRAIRL 336 (441)
T ss_dssp HHHHHHHHHHHHHHCTT-SSEEEEET-SBSTSSHHHHHHHHHHHTTSSSEEEEESTTSSB-SGGGSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcceecCcccccCCCCCHHHHHHHHHhhcCCcceeecCCcccccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999776666789999999999999999997
Q ss_pred hh
Q 020492 319 FF 320 (325)
Q Consensus 319 ~~ 320 (325)
..
T Consensus 337 Ry 338 (441)
T PF01055_consen 337 RY 338 (441)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 17
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=2.5e-74 Score=526.32 Aligned_cols=273 Identities=25% Similarity=0.432 Sum_probs=228.1
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCC---------CceeeeecCCCCCChHHHHHHHHH
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMD---------GFRCFTFDKERFPDPKSLAADLHL 71 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~---------~~~~f~~d~~~FPd~~~~~~~L~~ 71 (325)
|||+|||||||||++|.++++|+++++++|+++||||+|++|.+|+. ++++|+||+++||||++|+++||+
T Consensus 6 ~~P~walG~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~ 85 (292)
T cd06595 6 LLPRYAFGNWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHD 85 (292)
T ss_pred CCchHHHHhHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999964 567999999999999999999999
Q ss_pred CCCEEEeeeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHH-hhhhCCccEEE
Q 020492 72 NGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGIW 150 (325)
Q Consensus 72 ~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~-~~~~~Gvdg~~ 150 (325)
+|+|+++|++|.|..+..+..|++.+. +..+...+ +...++|||||++++||.+.++ .+.+.||||||
T Consensus 86 ~G~k~v~~v~P~~~~~~~~~~y~~~~~-~~~~~~~~----------~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W 154 (292)
T cd06595 86 RGLKVTLNLHPADGIRAHEDQYPEMAK-ALGVDPAT----------EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWW 154 (292)
T ss_pred CCCEEEEEeCCCcccCCCcHHHHHHHH-hcCCCccc----------CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 999999999999865544445654211 11111111 1234689999999998766664 56679999999
Q ss_pred ecCCCCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHH-HHHHHHHHHHhhcCCCCcEEEEccccCCCCcceee
Q 020492 151 NDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGML-MARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAAT 229 (325)
Q Consensus 151 ~D~~e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~-~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~ 229 (325)
+|+|||..+.. +|+++.. ++...|+.+++ +++|||++|||+|+|+|||+++
T Consensus 155 ~D~~E~~~~~~--------------------------~~~~~~~~~~~~~y~~~~~--~~~r~f~lsRs~~~G~qry~~~ 206 (292)
T cd06595 155 LDWQQGNRTRT--------------------------PGLDPLWWLNHVHYLDSAR--NGRRPLIFSRWAGLGSHRYPIG 206 (292)
T ss_pred ecCCCCccccc--------------------------CCcchHHHHHHHHHHHhhc--cCCCcEEEEeecccCCCcCCCc
Confidence 99999875410 1111111 12334555543 6799999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHHHHccccCCCcccccCCCCCC-CCChhHHHHHHHhhcccccccccCCCCC-CCCCccccChh
Q 020492 230 WTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG-NATPRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEE 307 (325)
Q Consensus 230 w~GD~~s~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~-~~~~eL~~RW~q~~af~P~~r~h~~~~~-~~~~Pw~~~~~ 307 (325)
|+||+.|+|+.|+.+|+.+|++|++|+||||+|||||.+ .+++|||+||+|+|||+|+||+|+..+. ..||||.|+++
T Consensus 207 WsGD~~s~W~~l~~~i~~~l~~~~sG~p~~g~DiGGF~~~~~~~ELy~RW~Q~gaf~P~~R~H~~~~~~~~~ePW~~g~~ 286 (292)
T cd06595 207 FSGDTIISWASLAFQPYFTATASNIGYGYWSHDIGGHMLGVTDPELYTRWIQFGVFSPILRLHSTKNPFNEKEPWLYEEE 286 (292)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHhcCCCcCCCccCCCCCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCccCcccCcH
Confidence 999999999999999999999999999999999999999 6999999999999999999999998754 58999999999
Q ss_pred hHHHH
Q 020492 308 VLFCS 312 (325)
Q Consensus 308 ~~~~~ 312 (325)
+++++
T Consensus 287 ~~~~~ 291 (292)
T cd06595 287 ASKIM 291 (292)
T ss_pred HHHhh
Confidence 98876
No 18
>PRK10426 alpha-glucosidase; Provisional
Probab=100.00 E-value=1.3e-71 Score=552.24 Aligned_cols=297 Identities=25% Similarity=0.456 Sum_probs=261.2
Q ss_pred CCCccch-hhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCC---------ceeeeecCCCCCChHHHHHHHH
Q 020492 1 MPPKWSL-GYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDG---------FRCFTFDKERFPDPKSLAADLH 70 (325)
Q Consensus 1 lpP~wal-G~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~---------~~~f~~d~~~FPd~~~~~~~L~ 70 (325)
|||+||| |+|++.. .++++|+++++++|+++||||+||+| +|+.. +.+|+||+++||||++|+++||
T Consensus 203 ~~P~Wal~G~~~g~~--~~~~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~ 279 (635)
T PRK10426 203 ELPDWAYDGVTLGIQ--GGTEVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLN 279 (635)
T ss_pred CCChhhccCcccccc--CCHHHHHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHH
Confidence 7999999 9998754 36889999999999999999999999 78642 2368999999999999999999
Q ss_pred HCCCEEEeeeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHH-hhhhCCccEE
Q 020492 71 LNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGI 149 (325)
Q Consensus 71 ~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~-~~~~~Gvdg~ 149 (325)
++|+|+++|++|+|..+ +.+|+++.++++|+++.+|+++++.+|++.++++|||||+|++||+++++ .+.+.|||||
T Consensus 280 ~~G~k~v~~i~P~v~~~--~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~ 357 (635)
T PRK10426 280 EEGIQFLGYINPYLASD--GDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGW 357 (635)
T ss_pred HCCCEEEEEEcCccCCC--CHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEE
Confidence 99999999999999874 46899999999999999999999999999999999999999999999986 5778999999
Q ss_pred EecCCCCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCccee-
Q 020492 150 WNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA- 228 (325)
Q Consensus 150 ~~D~~e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~- 228 (325)
|+|+||+ +|.+..+.. | ..+..+||+|+++++++++|++++..+.+|+|++|||+|+|+|||++
T Consensus 358 w~D~~E~---------~p~d~~~~~-----g-~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aGsQry~~~ 422 (635)
T PRK10426 358 MADFGEY---------LPTDAYLHN-----G-VSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGYTGSQKYSTL 422 (635)
T ss_pred eeeCCCC---------CCCcceeeC-----C-CCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccccCCcCCcccc
Confidence 9999995 344443321 1 13567999999999999999999886677999999999999999986
Q ss_pred eecCCCCCCch---HHHHHHHHHHHccccCCCcccccCCCCCC----CCChhHHHHHHHhhcccccccccCCCCCCCCCc
Q 020492 229 TWTGDNVSNWE---HLHMSISMVLQLGLSGQPFSGPDIGGFDG----NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEP 301 (325)
Q Consensus 229 ~w~GD~~s~W~---~L~~~i~~~l~~~l~G~~~~g~DigGf~~----~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~P 301 (325)
+|+||+.++|+ +|+.+|+++|++|+||+|+||+|||||.+ .+++|||+||+|+|||+|+||+|+.. .+++|
T Consensus 423 ~WsGD~~ssW~~~d~L~~~I~~~Ls~glsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~~~--~~~ep 500 (635)
T PRK10426 423 FWAGDQNVDWSLDDGLASVVPAALSLGMSGHGLHHSDIGGYTTLFGMKRTKELLLRWCEFSAFTPVMRTHEGN--RPGDN 500 (635)
T ss_pred ccCCCCCCcCcChhHHHHHHHHHHHHHhcCcCccccccCCCcCcCCCCCCHHHHHHHHHHhcCCceeecCCCC--CCCCC
Confidence 89999999995 89999999999999999999999999974 47999999999999999999999864 58999
Q ss_pred cccCh--hhHHHHHHHHHHh
Q 020492 302 WSFGE--EVLFCSSIVIIAF 319 (325)
Q Consensus 302 w~~~~--~~~~~~r~~~~~~ 319 (325)
|.|+. ++...++++++++
T Consensus 501 w~f~~~~~~~~~~~~~~~lR 520 (635)
T PRK10426 501 WQFDSDAETIAHFARMTRVF 520 (635)
T ss_pred CCCCCcHHHHHHHHHHHHHH
Confidence 99964 4445556666554
No 19
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=100.00 E-value=1.9e-71 Score=501.36 Aligned_cols=257 Identities=43% Similarity=0.849 Sum_probs=236.4
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceee--eecCCCCCChHHHHHHHHHCCCEEEe
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCF--TFDKERFPDPKSLAADLHLNGFKAIW 78 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f--~~d~~~FPd~~~~~~~L~~~G~k~~~ 78 (325)
|||+||||+|+|+++|.++++|+++++++++++||+|++++|++|+.+.++| +||+++||||++|+++||++|+|+++
T Consensus 5 ~~P~wa~G~~~~~~~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~ 84 (265)
T cd06589 5 LPPKWAFGYWLSRYGYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVL 84 (265)
T ss_pred CCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCccEEEECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEE
Confidence 7999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred eeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhh-hhCCccEEEecCCCCC
Q 020492 79 MLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF-IYNGVDGIWNDMNEPA 157 (325)
Q Consensus 79 ~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~-~~~Gvdg~~~D~~e~~ 157 (325)
|++|+| ++||.++++++ .+.||||||+|+|||.
T Consensus 85 ~~~P~v----------------------------------------------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 85 WIDPYI----------------------------------------------REWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred EeChhH----------------------------------------------HHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 999987 78999999987 6799999999999998
Q ss_pred ccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCC
Q 020492 158 VFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSN 237 (325)
Q Consensus 158 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~~s~ 237 (325)
.++... ...+ ..+...+.++||+|+.+++|+++|++++..+++||++++||+++|+|||+++|+||+.++
T Consensus 119 ~~~~~~-------~~~~---~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~Gsqry~~~W~GD~~st 188 (265)
T cd06589 119 PGDGNI-------FTGG---VVGRVKHEEMHNAYPLLYAEATYEALRKNSKNKRPFILSRSGYAGSQRYAGMWSGDNTST 188 (265)
T ss_pred cCCCcc-------ccCC---cCCCccHHHHcchhHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccccCcCceeCCcccCC
Confidence 754211 1110 001124678999999999999999999887789999999999999999999999999999
Q ss_pred chHHHHHHHHHHHccccCCCcccccCCCCCC-CCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHH
Q 020492 238 WEHLHMSISMVLQLGLSGQPFSGPDIGGFDG-NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 313 (325)
Q Consensus 238 W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~-~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r 313 (325)
|+.|+.+|+++|++|++|+|++|+|||||.+ .+++|||+||+|+|+|+|+||+|+......+|||.|++++.+++|
T Consensus 189 W~~l~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~~EL~~RW~Q~g~F~P~~R~H~~~~~~~~epw~~~~~~~~~~r 265 (265)
T cd06589 189 WGYLRSQIPAGLTMSMSGIPFVGSDIGGFTGGDPSAELYVRWFQFGAFTPIMRFHSWNSPKDTEPWAFDEEVTAIIR 265 (265)
T ss_pred HHHHHHHHHHHHhhhccCCcccCCCcCCCCCCCCCHHHHHHHHHHhcCCcceecCCCCCCCCcCCCCcCHHHHHhhC
Confidence 9999999999999999999999999999999 899999999999999999999999987778999999999988875
No 20
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=2.5e-68 Score=489.17 Aligned_cols=278 Identities=24% Similarity=0.415 Sum_probs=249.3
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeee
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
.+|.|.. |.+...+.|+++|+++++++++++||+|+|+||++|+..+++|+||+++||||++|+++||++|+|+++|+
T Consensus 13 ~~p~W~~--W~~~~~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i 90 (303)
T cd06592 13 RSPIWST--WARYKADINQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWV 90 (303)
T ss_pred CCCccCC--hhhhccCcCHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEE
Confidence 3689987 44456788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccccccccccceeeecCCC-CceeeeecCCCccCCCCCChHHHHHHHHHHHhhh-hCCccEEEecCCCCCc
Q 020492 81 DPGIKHEDGYFVYDSGSKIDVWIQKADG-TPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAV 158 (325)
Q Consensus 81 ~P~i~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~-~~Gvdg~~~D~~e~~~ 158 (325)
+|+|..++ ..|+++.++++|+++++| .++.+.+|+|.++++|||||+|++||.+++++++ +.||||||+|+|||..
T Consensus 91 ~P~i~~~s--~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~ 168 (303)
T cd06592 91 HPFINTDS--ENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASY 168 (303)
T ss_pred CCeeCCCC--HHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCccc
Confidence 99998765 479999999999999988 7888999999999999999999999999999988 7999999999999973
Q ss_pred cCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCc
Q 020492 159 FKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNW 238 (325)
Q Consensus 159 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~~s~W 238 (325)
+|.+..+. .+..+||.|..++++++++ .++++++||+|+|+|+++++|+||+.|+|
T Consensus 169 -------~p~~~~~~---------~~~~~~n~y~~~~~~~~~~--------~~~~~~~Rsg~~g~~~~~~~w~GD~~s~W 224 (303)
T cd06592 169 -------LPQDYVTE---------DPLLNPDEYTRLYAEMVAE--------FGDLIEVRAGWRSQGLPLFVRMMDKDSSW 224 (303)
T ss_pred -------CCcccccC---------CcccCHHHHHHHHHHHHHh--------hccceEEEeeeecCCCCeeEEcCCCCCCC
Confidence 44443322 1345789999888887643 13899999999999888889999999999
Q ss_pred hHH---HHHHHHHHHccccCCCccccc-CCCCCC-------CCChhHHHHHHHhhcccccccccCCCCCCCCCccccChh
Q 020492 239 EHL---HMSISMVLQLGLSGQPFSGPD-IGGFDG-------NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEE 307 (325)
Q Consensus 239 ~~L---~~~i~~~l~~~l~G~~~~g~D-igGf~~-------~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~ 307 (325)
++| +.+|+++|++|+||+|||++| ||||.+ .+++|||+||+|+|+|+|+||+| ++||.|+++
T Consensus 225 ~~~~gl~~~i~~~L~~~lsG~~~w~~D~iGGf~~~~~~~~~~~~~EL~~RW~q~g~f~P~~R~h-------~~PW~~~~e 297 (303)
T cd06592 225 GGDNGLKSLIPTALTMGLLGYPFVLPDMIGGNAYGGNSDDELPDKELYIRWLQLSAFLPVMQFS-------IAPWQYDDE 297 (303)
T ss_pred CCCcCHHHHHHHHHHhhccCCcccCCCccCCccccccccCCCCCHHHHHHHHHHHHhChhhhcc-------cCCccCCHH
Confidence 987 999999999999999999999 899874 36899999999999999999999 489999999
Q ss_pred hHHHHH
Q 020492 308 VLFCSS 313 (325)
Q Consensus 308 ~~~~~r 313 (325)
+++++|
T Consensus 298 ~~~~~~ 303 (303)
T cd06592 298 VVEIAK 303 (303)
T ss_pred HHHhhC
Confidence 998875
No 21
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-66 Score=507.58 Aligned_cols=308 Identities=42% Similarity=0.807 Sum_probs=282.4
Q ss_pred CCCccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeee
Q 020492 1 MPPKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 1 lpP~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
|||+|+||||+|||+|.+.+++++++++++++|||+|++|+|.+|+++++|||+|+.+||+++++++.||++|+|+++++
T Consensus 292 m~pYWslGf~~~RwgY~nls~~~dvv~~~~~agiPld~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvlii 371 (805)
T KOG1065|consen 292 MPPYWSLGFQLCRWGYKNLSVVRDVVENYRAAGIPLDVIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLII 371 (805)
T ss_pred CCchhhccceecccccccHHHHHHHHHHHHHcCCCcceeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccccccccccceeeecCCCCc-eeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCCCCCc
Q 020492 81 DPGIKHEDGYFVYDSGSKIDVWIQKADGTP-FIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEPAV 158 (325)
Q Consensus 81 ~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~e~~~ 158 (325)
+|+|+.+..|..|+++.++++++++.+|++ +++++|||.++++||+||++.+||.+.++.+.+ .++||+|+|+||+..
T Consensus 372 dP~is~~~~y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE~sn 451 (805)
T KOG1065|consen 372 DPFISTNSSYGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNEPSN 451 (805)
T ss_pred CCccccCccchhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCCccc
Confidence 999999888888999999999999999988 899999999999999999999999999998886 799999999999999
Q ss_pred cCCCCCCCCCCCccCCCCCCCccccc-ccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCC
Q 020492 159 FKSVTKTMPESNIHRGDDEIGGCQNH-SYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSN 237 (325)
Q Consensus 159 ~~~~~~~~P~~~~~~~~~~~~~~~~~-~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~~~w~GD~~s~ 237 (325)
|+... .- .....++ .... .+.||+|++..+.|++.++.+.. ++|+++++||+|+|+.||+++|+||+.++
T Consensus 452 f~~pp-~~--~~~~~~~-----~~~~tyd~~~lyg~~~aiat~~a~~~v~-~kr~~i~srsTf~g~g~y~~hwlgdn~~~ 522 (805)
T KOG1065|consen 452 FPSPP-IN--PTLDNGD-----LYAKTYDTHNLYGYSEAIATHQALVDVP-GKRSFILSRSTFVGSGRYAGHWLGDNTAR 522 (805)
T ss_pred CCCCC-cc--ccccccc-----ccccchhhhhhHhHHHhhhhhccceecc-ccccccccccceecccccceeecccccce
Confidence 87411 00 1111111 1111 45799999999999999998886 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHHH
Q 020492 238 WEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVII 317 (325)
Q Consensus 238 W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~ 317 (325)
|+.|+.+|.+||.++++|+|++|+|||||.+.+++|||.||+|+|||+|+||+|...+...+||..++. +.+.+|+++-
T Consensus 523 w~~L~~sI~gml~fnl~Gip~Vg~Dicgf~~~~~eELc~RW~q~gaF~Pf~R~hn~~~~~~qe~~~~~s-v~~a~r~~~~ 601 (805)
T KOG1065|consen 523 WEDLQTSISGMLEFNLFGIPMVGSDICGFLGPPTEELCLRWLQLGAFYPFSRNHNSPGEPRQEPYTWSS-VAEAARNALT 601 (805)
T ss_pred ehhccccchhhhcccccCCCccchhhhcCCCCCCHHHHHHHHHhccCCchhhccCCCCCcccChhhHHH-HHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999998888999999975 7777777764
Q ss_pred H
Q 020492 318 A 318 (325)
Q Consensus 318 ~ 318 (325)
+
T Consensus 602 ~ 602 (805)
T KOG1065|consen 602 L 602 (805)
T ss_pred h
Confidence 3
No 22
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=2.4e-47 Score=332.52 Aligned_cols=228 Identities=25% Similarity=0.431 Sum_probs=192.2
Q ss_pred CCCccchhh-hhhcC-----CC---------------CCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCC
Q 020492 1 MPPKWSLGY-HQCRW-----SY---------------DSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERF 59 (325)
Q Consensus 1 lpP~walG~-~~s~~-----~y---------------~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~F 59 (325)
|||+|||++ |...+ .. ..+..+++++++|+++++|+..|+-+++|..++
T Consensus 5 ~~p~~a~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~y~~~~~plgw~lpndgyg~~y---------- 74 (261)
T cd06596 5 LLPEYALYLGDADCYNRDYWRKVPEGTSDGGLNGEKESTTDDARKVADKYKENDMPLGWMLPNDGYGCGY---------- 74 (261)
T ss_pred cchHHHHhccchhhhccCccccCCCccccccCCCCcccchhhHHHHHHHHHhcCCCceeeccCCCCcchH----------
Confidence 799999976 32222 11 235789999999999999999999999986654
Q ss_pred CChHHHHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHH
Q 020492 60 PDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK 139 (325)
Q Consensus 60 Pd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~ 139 (325)
.|++++++.++++|++.++|.. ++ + .+.-+
T Consensus 75 ~~l~~~~~~~~~~g~~~glwt~------~~---------------------------------l-----------~~~~~ 104 (261)
T cd06596 75 ENLKEVVDYLHANGVETGLWTQ------SG---------------------------------L-----------RDIAK 104 (261)
T ss_pred HHHHHHHHHHHHcCCccccccc------cc---------------------------------h-----------hhhhh
Confidence 6799999999999999999832 10 0 00111
Q ss_pred hhhhCCccEEEecCCCCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccc
Q 020492 140 DFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAG 219 (325)
Q Consensus 140 ~~~~~Gvdg~~~D~~e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~ 219 (325)
.....|+...|+|-..- | ..-.|++.+++++||++++. +++|||+++||+
T Consensus 105 ev~~~g~~~~k~Dv~w~-----------------g------------~gy~~~l~~~ka~yeg~~~~-~~~RpfiltRsg 154 (261)
T cd06596 105 EVGAAGVRARKTDVAWV-----------------G------------AGYSFALNGVKAAADGIESN-SNARPFIVTVDG 154 (261)
T ss_pred hhccCCceEEeccchhh-----------------c------------cchhHHHHHHHHHHHHHHhC-CCCCCEEEEecC
Confidence 22235888899985421 0 13467788999999999876 789999999999
Q ss_pred cCCCCcceeeecCCCCCCchHHHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCC
Q 020492 220 FIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDH 299 (325)
Q Consensus 220 ~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~ 299 (325)
|+|+|||+++|+||+.++|+.|+.+|+++|++||||+||||+|||||.++ ++|||+||+|+++|+|+||+|+..++.+|
T Consensus 155 ~aGsQRy~~~WsGD~~stWe~Lr~sI~~~L~~gLsG~p~~G~DIGGF~g~-~~EL~vRW~Q~gaF~P~~R~h~~~~~~~r 233 (261)
T cd06596 155 WAGTQRYAGIWTGDQSGSWEYIRFHIPTYIGSGLSGQPNTTSDVDGIFGG-SPETYTRDLQWKAFTPVLMTMSGWAANDK 233 (261)
T ss_pred ccccCCCCCccCCCCcCcHHHHHHHHHHHHHHHhcCCCcCccccCcCCCC-CHHHHHHHHHHHHhhhhhhhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998 99999999999999999999988777899
Q ss_pred CccccChhhHHHHHHHHHHh
Q 020492 300 EPWSFGEEVLFCSSIVIIAF 319 (325)
Q Consensus 300 ~Pw~~~~~~~~~~r~~~~~~ 319 (325)
|||.|++++++++|++|+|-
T Consensus 234 EPW~fge~~~~i~R~~l~LR 253 (261)
T cd06596 234 QPWVFGEPYTSINRDYLKLK 253 (261)
T ss_pred CCeeCCHHHHHHHHHHHHHH
Confidence 99999999999999999873
No 23
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=99.81 E-value=6.5e-19 Score=165.96 Aligned_cols=265 Identities=18% Similarity=0.213 Sum_probs=154.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEecccCC-------CceeeeecCCCCCC-hHHHHHHHHHCCCEEEeeeCCccccC
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWMDIDYMD-------GFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHE 87 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~-------~~~~f~~d~~~FPd-~~~~~~~L~~~G~k~~~~~~P~i~~~ 87 (325)
..+++.+++.++.+++.|+ +.|+||++|+. +.|+|..|+++||+ ++.+++.+|++|+|+++|+.|.+...
T Consensus 54 d~~e~~i~~~a~~~~~~G~--e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 54 DITEEKILELADAAAELGY--EYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp G--HHHHHHHHHHHHHHT---SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred CCCHHHHHHHHHHHHHhCC--EEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccc
Confidence 4588999999999988875 88999999985 35899999999999 89999999999999999999976543
Q ss_pred CCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhh-hCCccEEEecCCCCCccCCCCCCC
Q 020492 88 DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTM 166 (325)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~-~~Gvdg~~~D~~e~~~~~~~~~~~ 166 (325)
.+ .+|+ ..++++++.++..+..+ ....++|+++|++++|..+.+.+++ ++|||++|+|+|....-
T Consensus 132 ~S-~l~~--~hPdw~l~~~~~~~~~~----r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~------- 197 (394)
T PF02065_consen 132 DS-DLYR--EHPDWVLRDPGRPPTLG----RNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITE------- 197 (394)
T ss_dssp SS-CHCC--SSBGGBTCCTTSE-ECB----TTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-------
T ss_pred hh-HHHH--hCccceeecCCCCCcCc----ccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCC-------
Confidence 32 4665 45677776544332222 2356799999999999999998765 69999999999974321
Q ss_pred CCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCC-----cc-eeeecCCCCCCchH
Q 020492 167 PESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQ-----RY-AATWTGDNVSNWEH 240 (325)
Q Consensus 167 P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~q-----r~-~~~w~GD~~s~W~~ 240 (325)
+ +....+ ...++....+| .+.+.+++.. ...+|-+.|+.-|-. +| ...|+.|+....+.
T Consensus 198 ~------~~~~~~-~~~~~~~~~~y------~l~~~L~~~~--P~v~iE~CssGG~R~D~g~l~~~~~~w~SD~tda~~R 262 (394)
T PF02065_consen 198 A------GSPSLP-EGYHRYVLGLY------RLLDRLRARF--PDVLIENCSSGGGRFDPGMLYYTPQSWTSDNTDALER 262 (394)
T ss_dssp -------SSTTS--GHHHHHHHHHH------HHHHHHHHHT--TTSEEEE-BTTBTTTSHHHHCCSSEEESBST-SHHHH
T ss_pred C------CCCCch-HHHHHHHHHHH------HHHHHHHHhC--CCcEEEeccCCCCccccchheeccccccCCccchHHH
Confidence 0 000000 00111111222 1344555543 345566665443322 23 35899999988776
Q ss_pred HHHHHHHHHHccccCCCcccccCCCCCCCCChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHHHHhh
Q 020492 241 LHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 320 (325)
Q Consensus 241 L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~~~~ 320 (325)
++.+....+.+-..=+..+.+++-.-.......|-.|=. .+.| -.+- ..-.+-...++..+.+++.|.+|+
T Consensus 263 ~~iq~g~s~~~p~~~~~~hv~~~p~~~~~r~~~l~~r~~-~a~~-g~~g-------~e~dl~~ls~~e~~~~~~~ia~YK 333 (394)
T PF02065_consen 263 LRIQYGTSLFYPPEYMGAHVSASPNHQTGRTTPLEFRAH-VAMF-GRLG-------LELDLTKLSEEELAAVKEQIAFYK 333 (394)
T ss_dssp HHHHHHHCTTSSGGGEEEEEEHSS-TTTHHHGGHHHHHH-HHTC-SEEE-------EESTGCGS-HHHHHHHHHHHHHHH
T ss_pred hhhhcccccccCHHHhCCeEEeccccccCCcccceechh-hhhc-CCce-------eccCcccCCHHHHHHHHHHHHHHH
Confidence 666654333111110001111111100011224444432 3333 3332 234555667788888999888886
No 24
>PLN03231 putative alpha-galactosidase; Provisional
Probab=99.50 E-value=1.5e-12 Score=120.51 Aligned_cols=196 Identities=16% Similarity=0.155 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHhcCC---CceEEEEecccCC--------------------CceeeeecCCCCCC------hHHHHHH
Q 020492 18 SDKRVREICRTFREKGI---PCDVIWMDIDYMD--------------------GFRCFTFDKERFPD------PKSLAAD 68 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~i---P~d~i~iD~~w~~--------------------~~~~f~~d~~~FPd------~~~~~~~ 68 (325)
++++|++.++ +.+.|+ ..+.|+||++|+. ..+.+..|++|||+ +|.+.+.
T Consensus 16 ~E~~i~~~Ad-~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADy 94 (357)
T PLN03231 16 SEEQFLENAK-IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAK 94 (357)
T ss_pred CHHHHHHHHH-HHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHH
Confidence 7899999998 556553 5799999999974 24667899999996 8999999
Q ss_pred HHHCCCEEEeeeCCccccCC---CccccccccccceeeecCC-CCceeeeecCCC-ccCCCCCChHHHHHHHHHHHhhhh
Q 020492 69 LHLNGFKAIWMLDPGIKHED---GYFVYDSGSKIDVWIQKAD-GTPFIGEVWPGP-CVFPDYTQSKVRSWWGSLVKDFIY 143 (325)
Q Consensus 69 L~~~G~k~~~~~~P~i~~~~---~~~~~~~~~~~~~~~~~~~-g~~~~~~~w~g~-~~~~Df~~p~a~~w~~~~~~~~~~ 143 (325)
+|++|+|+++++.|.+.... .+++.-.-...+.-....| ..+-+...|... ..-+|...+.+++|+.+..+.+.+
T Consensus 95 vHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA~ 174 (357)
T PLN03231 95 VHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYAS 174 (357)
T ss_pred HHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999998876432 1111100000000000000 000011123222 225799999999999999999999
Q ss_pred CCccEEEecCCCCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCC
Q 020492 144 NGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGS 223 (325)
Q Consensus 144 ~Gvdg~~~D~~e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~ 223 (325)
+|||++|.|.+.+.. .. ....| .++.++|++ ..||+++|-+-..+.
T Consensus 175 WGVDylK~D~c~~~~-----------~~---------------~~~~y-----~~m~~AL~~---tGRpIv~Slc~g~~~ 220 (357)
T PLN03231 175 WGIDFIKHDCVFGAE-----------NP---------------QLDEI-----LTVSKAIRN---SGRPMIYSLSPGDGA 220 (357)
T ss_pred hCCCEEeecccCCCC-----------cc---------------cHHHH-----HHHHHHHHH---hCCCeEEEecCCCCC
Confidence 999999999653210 00 01122 244556654 468999887632111
Q ss_pred --------Ccceeee--cCCCCCCchHHHHHHHHH
Q 020492 224 --------QRYAATW--TGDNVSNWEHLHMSISMV 248 (325)
Q Consensus 224 --------qr~~~~w--~GD~~s~W~~L~~~i~~~ 248 (325)
+.++..| ++|+..+|+.+...+..+
T Consensus 221 ~~~~~~~i~~~an~WR~s~DI~d~W~~v~~~~~~~ 255 (357)
T PLN03231 221 TPGLAARVAQLVNMYRVTGDDWDDWKYLVKHFDVA 255 (357)
T ss_pred CchhhhhhhhhcCcccccCCcccchhhHHHHHHHH
Confidence 2334566 799999999988777554
No 25
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=4.3e-13 Score=126.83 Aligned_cols=264 Identities=16% Similarity=0.180 Sum_probs=164.9
Q ss_pred hhhcCCCC---CHHHHHHHHHHHHhcCCCceEEEEecccC-------CCceeeeecCCCCCC-hHHHHHHHHHCCCEEEe
Q 020492 10 HQCRWSYD---SDKRVREICRTFREKGIPCDVIWMDIDYM-------DGFRCFTFDKERFPD-PKSLAADLHLNGFKAIW 78 (325)
Q Consensus 10 ~~s~~~y~---~~~~v~~~~~~~~~~~iP~d~i~iD~~w~-------~~~~~f~~d~~~FPd-~~~~~~~L~~~G~k~~~ 78 (325)
|+|+++|+ +.+++++.++..++.+ ++.++||++|+ +..|||-.|.++||+ .+++++.++++|+++++
T Consensus 296 ~nsWea~Yfd~t~e~ile~vk~akk~g--vE~FvlDDGwfg~rndd~~slGDWlv~seKfPsgiE~li~~I~e~Gl~fGI 373 (687)
T COG3345 296 WNSWEAYYFDFTEEEILENVKEAKKFG--VELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPSGIEELIEAIAENGLIFGI 373 (687)
T ss_pred eeceeeeeecCCHHHHHHHHHHHhhcC--eEEEEEccccccccCcchhhhhceecchhhccccHHHHHHHHHHcCCccce
Confidence 44555543 7899999999876555 89999999999 447899999999999 89999999999999999
Q ss_pred eeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHh-hhhCCccEEEecCCCCC
Q 020492 79 MLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPA 157 (325)
Q Consensus 79 ~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~-~~~~Gvdg~~~D~~e~~ 157 (325)
|+.|++...++ .+|+ .++++.|| .+|.|.... -+...+|++||.+.....+.+.. ++..-||++|.|||.-
T Consensus 374 WlePemvs~dS-dlfr--qHPDWvvk-~~G~p~~~~---Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~- 445 (687)
T COG3345 374 WLEPEMVSEDS-DLFR--QHPDWVVK-VNGYPLMAG---RNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNRE- 445 (687)
T ss_pred eecchhcccch-HHHh--hCCCeEEe-cCCcccccc---ccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcc-
Confidence 99998765443 5787 78899998 678775542 13566788888877766655543 3334577777777642
Q ss_pred ccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcc-------e-ee
Q 020492 158 VFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRY-------A-AT 229 (325)
Q Consensus 158 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~-------~-~~ 229 (325)
.+.. ....+ + .. ...+ |-+ |+-.... ..+.|.|+-.|+..|..|+ + ..
T Consensus 446 l~kl------g~~~~-~--~l------~qqr--y~l------y~l~~~l-~~k~~~i~FeScasGg~r~d~gml~~~~~~ 501 (687)
T COG3345 446 LFKL------GFLFW-G--AL------PQQR--YQL------YRLFDQL-NLKFPHILFESCASGGERIDKGMLEYSPQL 501 (687)
T ss_pred eeec------CCCCC-c--cc------cchH--HHH------HHHHHHh-hhcCCCchhhhhcccccccchHHhhhcccc
Confidence 1110 00000 0 00 0011 211 2222222 2456777777766666554 2 48
Q ss_pred ecCCCCCCchHHHHHHHHHHHccccCCC--cccccCCCCCCCCChhHHHHHHHhhccc---ccccccCCCCCCCCCcccc
Q 020492 230 WTGDNVSNWEHLHMSISMVLQLGLSGQP--FSGPDIGGFDGNATPRLFGRWMGIGAMF---PFCRGHTESDAIDHEPWSF 304 (325)
Q Consensus 230 w~GD~~s~W~~L~~~i~~~l~~~l~G~~--~~g~DigGf~~~~~~eL~~RW~q~~af~---P~~r~h~~~~~~~~~Pw~~ 304 (325)
|+.|....=+.|+.+-.+ -.=+| ++|.-|++ .+-=-+||+---.+. .+|+.-+ ..-+|-..
T Consensus 502 w~Sd~~dAi~r~~iqrg~-----s~~~P~~~mGaHi~~-----~p~h~~~rm~~l~~rg~~a~~g~~g----~elD~~~l 567 (687)
T COG3345 502 WCSDLTDAIGRLDIQRGG-----SYTYPPESMGAHISA-----VPNHQARRMTSLETRGLVAHFGFWG----YELDCTIL 567 (687)
T ss_pred cCCCCcchhhhccccccC-----cccCChHHhhhhccC-----CCcHHHhhhhhhhhhhHHHHhhhhc----cCCCcccC
Confidence 999987644444332211 11234 45555553 233345666333332 2333322 25567777
Q ss_pred ChhhHHHHHHHHHHhhh
Q 020492 305 GEEVLFCSSIVIIAFFW 321 (325)
Q Consensus 305 ~~~~~~~~r~~~~~~~~ 321 (325)
.++..++..+.+.+|.-
T Consensus 568 sdeek~~~akqialyke 584 (687)
T COG3345 568 SDEEKDLTAKQIALYKE 584 (687)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88888888888888853
No 26
>PLN02229 alpha-galactosidase
Probab=99.35 E-value=5.4e-11 Score=112.21 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHhcCC---CceEEEEecccCCC----ceeeeecCCCCCC-hHHHHHHHHHCCCEEEeeeCCccccCCC
Q 020492 18 SDKRVREICRTFREKGI---PCDVIWMDIDYMDG----FRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDG 89 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~i---P~d~i~iD~~w~~~----~~~f~~d~~~FPd-~~~~~~~L~~~G~k~~~~~~P~i~~~~~ 89 (325)
+++.|++.++.+.+.|+ ..+.|.||++|+.. .+.+..|++|||+ ++.+++.+|++|+|++++..+.+.....
T Consensus 78 ~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~ 157 (427)
T PLN02229 78 NETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQV 157 (427)
T ss_pred CHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccCC
Confidence 78999999999866554 37999999999753 5789999999998 8999999999999999998887654321
Q ss_pred ccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCCCCccCCCCCCCCCC
Q 020492 90 YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPES 169 (325)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~~~~~~~~~~~P~~ 169 (325)
.||. .++ ...-.+.+.++|||++|.|.+....
T Consensus 158 --------------------------~pGS---~g~--------e~~DA~~fA~WGVDylK~D~C~~~~----------- 189 (427)
T PLN02229 158 --------------------------RPGS---LFH--------EVDDADIFASWGVDYLKYDNCYNLG----------- 189 (427)
T ss_pred --------------------------CCCC---ccH--------HHHHHHHHHHcCCCEEEecCCCCCC-----------
Confidence 1122 121 1122445667999999999873210
Q ss_pred CccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCC------Ccceeee--cCCCCCCchHH
Q 020492 170 NIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGS------QRYAATW--TGDNVSNWEHL 241 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~------qr~~~~w--~GD~~s~W~~L 241 (325)
......|. .+.+++++ ..||+++|=+.|.-. +.++..| +||+..+|+++
T Consensus 190 ---------------~~~~~~y~-----~m~~AL~~---tGRpI~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W~sv 246 (427)
T PLN02229 190 ---------------IKPIERYP-----PMRDALNA---TGRSIFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTWASM 246 (427)
T ss_pred ---------------cchhHHHH-----HHHHHHHh---hCCCcEEEecCCCCCCHHHHHHhhcCeeeccCCcccccccH
Confidence 00112232 23445543 468988874433211 2345566 79999999998
Q ss_pred HHHHHHHH
Q 020492 242 HMSISMVL 249 (325)
Q Consensus 242 ~~~i~~~l 249 (325)
...+...-
T Consensus 247 ~~i~~~~~ 254 (427)
T PLN02229 247 TTIADLNN 254 (427)
T ss_pred HHHHHHHH
Confidence 88775443
No 27
>PLN02692 alpha-galactosidase
Probab=99.35 E-value=8.5e-11 Score=110.41 Aligned_cols=162 Identities=19% Similarity=0.195 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHhcCC---CceEEEEecccCC----CceeeeecCCCCCC-hHHHHHHHHHCCCEEEeeeCCccccCCC
Q 020492 18 SDKRVREICRTFREKGI---PCDVIWMDIDYMD----GFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDG 89 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~i---P~d~i~iD~~w~~----~~~~f~~d~~~FPd-~~~~~~~L~~~G~k~~~~~~P~i~~~~~ 89 (325)
+++.|++.++.+.+.|+ ..+.|.||++|+. ..+.+..|++|||+ ++.+++.+|++|+|++++..+......
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC~- 149 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCS- 149 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCCccccC-
Confidence 78999999998877765 4899999999985 35789999999998 899999999999999999876532210
Q ss_pred ccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCCCCccCCCCCCCCCC
Q 020492 90 YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPES 169 (325)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~~~~~~~~~~~P~~ 169 (325)
.+.|.+..++..-.+.+.++|||++|.|.+-... .
T Consensus 150 -----------------------------------~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~----------~ 184 (412)
T PLN02692 150 -----------------------------------KTMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDG----------S 184 (412)
T ss_pred -----------------------------------CCCCCchHHHHHHHHHHHhcCCCEEeccccCCCC----------c
Confidence 0124456677777777888999999999873110 0
Q ss_pred CccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCC------Ccceeee--cCCCCCCchHH
Q 020492 170 NIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGS------QRYAATW--TGDNVSNWEHL 241 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~------qr~~~~w--~GD~~s~W~~L 241 (325)
.....|. ++.+++++ ..||+++|=+.+.-. ..++..| ++|+..+|+++
T Consensus 185 ----------------~~~~~y~-----~m~~AL~~---tGRpI~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv 240 (412)
T PLN02692 185 ----------------KPTVRYP-----VMTRALMK---AGRPIFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSM 240 (412)
T ss_pred ----------------chhHHHH-----HHHHHHHH---hCCCeEEEecCCCcCChhhhhhhcCCccccccccccchHhH
Confidence 0011232 33445544 458998875433222 2334566 79999999998
Q ss_pred HHHHHHHH
Q 020492 242 HMSISMVL 249 (325)
Q Consensus 242 ~~~i~~~l 249 (325)
...+....
T Consensus 241 ~~~~~~~~ 248 (412)
T PLN02692 241 ISRADMNE 248 (412)
T ss_pred HHHHHHHH
Confidence 88775443
No 28
>PLN02899 alpha-galactosidase
Probab=99.34 E-value=4.9e-11 Score=115.67 Aligned_cols=192 Identities=16% Similarity=0.160 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHhcC---CCceEEEEecccCCC-----------------ceeeeecCCCCCC------hHHHHHHHHH
Q 020492 18 SDKRVREICRTFREKG---IPCDVIWMDIDYMDG-----------------FRCFTFDKERFPD------PKSLAADLHL 71 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~---iP~d~i~iD~~w~~~-----------------~~~f~~d~~~FPd------~~~~~~~L~~ 71 (325)
++++|++.++. .+.| ...+.|+||+.|+.. ++.+.+|++|||+ ++.+.+.+|+
T Consensus 46 ~E~~i~~~Ad~-vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHs 124 (633)
T PLN02899 46 SEEEFLQNAEI-VSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHA 124 (633)
T ss_pred CHHHHHHHHHH-HHcchHhhCCeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHh
Confidence 78899998884 4444 357999999999742 4567899999994 8999999999
Q ss_pred CCCEEEeeeCCccccCC---Ccccccc-------ccccceeeecCCCCceeeeecCC-CccCCCCCChHHHHHHHHHHHh
Q 020492 72 NGFKAIWMLDPGIKHED---GYFVYDS-------GSKIDVWIQKADGTPFIGEVWPG-PCVFPDYTQSKVRSWWGSLVKD 140 (325)
Q Consensus 72 ~G~k~~~~~~P~i~~~~---~~~~~~~-------~~~~~~~~~~~~g~~~~~~~w~g-~~~~~Df~~p~a~~w~~~~~~~ 140 (325)
+|+|+++++.+.+.... +.++... +...++-.++. +.+-...-|.. ...-+|.+.+.+++++.+..+.
T Consensus 125 kGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DI-a~~~~tC~w~~~g~~~vDa~~~~g~a~~~Sla~t 203 (633)
T PLN02899 125 MGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDI-ALKERACAWMSHGFMSVNTKLGAGKAFLRSLYDQ 203 (633)
T ss_pred CCcceEEEecCCCcccccccCCccccccccccccccccccchhhc-cccccccccCCCCcccccccccchhhhhHHHHHH
Confidence 99999999998775421 1111110 00001111110 00000111211 1123788889999999999999
Q ss_pred hhhCCccEEEecCCCCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEcccc
Q 020492 141 FIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGF 220 (325)
Q Consensus 141 ~~~~Gvdg~~~D~~e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~ 220 (325)
+.++|||++|.|..-+.. .+ ...| +++.+++++ ..||++++-+-
T Consensus 204 fAsWGVDyLKyD~c~~~~------------~~---------------~~ey-----~~ms~AL~a---TGRPIvySLsp- 247 (633)
T PLN02899 204 YAEWGVDFVKHDCVFGDD------------FD---------------LEEI-----TYVSEVLKE---LDRPIVYSLSP- 247 (633)
T ss_pred HHHhCCCEEEEcCCCCCC------------CC---------------hHHH-----HHHHHHHHH---hCCCeEEEecC-
Confidence 999999999999642110 00 0112 345566654 46999998773
Q ss_pred CCCC----------cceeee--cCCCCCCchHHHHHHHHH
Q 020492 221 IGSQ----------RYAATW--TGDNVSNWEHLHMSISMV 248 (325)
Q Consensus 221 ~G~q----------r~~~~w--~GD~~s~W~~L~~~i~~~ 248 (325)
|.+ .++..| +||...+|+.+...+..+
T Consensus 248 -G~~~~p~wa~~v~~~aNmWRitgDI~D~W~sV~~~~d~~ 286 (633)
T PLN02899 248 -GTSATPTMAKEVSGLVNMYRITGDDWDTWGDVAAHFDVS 286 (633)
T ss_pred -CcccchhhhhhhhccCccceecCCcccchHHHHHHHHHH
Confidence 322 234456 699999999988776543
No 29
>PLN02808 alpha-galactosidase
Probab=99.31 E-value=1.9e-10 Score=107.70 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHHhcCC---CceEEEEecccCC----CceeeeecCCCCCC-hHHHHHHHHHCCCEEEeeeCCccccCC
Q 020492 17 DSDKRVREICRTFREKGI---PCDVIWMDIDYMD----GFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHED 88 (325)
Q Consensus 17 ~~~~~v~~~~~~~~~~~i---P~d~i~iD~~w~~----~~~~f~~d~~~FPd-~~~~~~~L~~~G~k~~~~~~P~i~~~~ 88 (325)
-+++.|++.++.+.+.|+ ..+.|+||++|+. ..+.+..|++|||+ ++.+++.+|++|+|++++..+......
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC~ 125 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTCS 125 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEecCCccccC
Confidence 378999999999877665 4899999999975 36789999999998 899999999999999999876422111
Q ss_pred CccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCCCCccCCCCCCCCC
Q 020492 89 GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPE 168 (325)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~~~~~~~~~~~P~ 168 (325)
+ ..|.+..++.+-.+.+.++|||++|.|.+-.. .
T Consensus 126 -------------------~-----------------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~----------~ 159 (386)
T PLN02808 126 -------------------K-----------------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENT----------G 159 (386)
T ss_pred -------------------C-----------------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCC----------C
Confidence 0 12444566677777788899999999986311 0
Q ss_pred CCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccC--CC----Ccceeee--cCCCCCCchH
Q 020492 169 SNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFI--GS----QRYAATW--TGDNVSNWEH 240 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~--G~----qr~~~~w--~GD~~s~W~~ 240 (325)
...+..|. ++.+++.+ ..||++++-+.+. .- ..++..| ++|+..+|++
T Consensus 160 ----------------~~~~~~y~-----~m~~AL~~---tGRpi~~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~ 215 (386)
T PLN02808 160 ----------------TSPQERYP-----KMSKALLN---SGRPIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDS 215 (386)
T ss_pred ----------------ccHHHHHH-----HHHHHHHH---hCCCeEEEecCCCCCCHHHHHHhhcCcccccCCcccchhh
Confidence 00122332 33445544 3689888744322 11 2234456 7999999999
Q ss_pred HHHHHHHHH
Q 020492 241 LHMSISMVL 249 (325)
Q Consensus 241 L~~~i~~~l 249 (325)
+...+....
T Consensus 216 v~~~~~~~~ 224 (386)
T PLN02808 216 MTSRADQND 224 (386)
T ss_pred HHHHHHhhh
Confidence 888775443
No 30
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=98.48 E-value=1.4e-06 Score=79.84 Aligned_cols=191 Identities=21% Similarity=0.284 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhcC---CCceEEEEecccCCCcee----eeecCCCCCC-hHHHHHHHHHCCCEEEeeeCCccccCCCc
Q 020492 19 DKRVREICRTFREKG---IPCDVIWMDIDYMDGFRC----FTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGY 90 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~---iP~d~i~iD~~w~~~~~~----f~~d~~~FPd-~~~~~~~L~~~G~k~~~~~~P~i~~~~~~ 90 (325)
+.-++++++.+.+.| +....|.||+-|.+..++ ...|+.+||. .+++.+.+|.+|+|++++.+-.-..
T Consensus 59 E~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~Rd~~grLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~T---- 134 (414)
T KOG2366|consen 59 EQLFKEMADAMVSEGLADVGYEYINIDDCWSEVTRDSDGRLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFT---- 134 (414)
T ss_pred HHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhccCCccccccChhhcccchhhhhhchhhcCCceeeeeccCchh----
Confidence 677788899888866 678999999999765444 4578999998 6999999999999999864422100
Q ss_pred cccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCCCCccCCCCCCCCCCC
Q 020492 91 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESN 170 (325)
Q Consensus 91 ~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~~~~~~~~~~~P~~~ 170 (325)
+...|| .......--+.+.++|||+.|+|.+.... ..
T Consensus 135 ----------------------C~g~PG-----------S~~~e~~DA~tFA~WgvDylKlD~C~~~~---------~~- 171 (414)
T KOG2366|consen 135 ----------------------CAGYPG-----------SLGHEESDAKTFADWGVDYLKLDGCFNNL---------IT- 171 (414)
T ss_pred ----------------------hccCCc-----------ccchhhhhhhhhHhhCCcEEecccccccc---------cc-
Confidence 011112 11112222345678999999999875311 00
Q ss_pred ccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEE-cccc---CC---------CCcceeee--cCCCC
Q 020492 171 IHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLT-RAGF---IG---------SQRYAATW--TGDNV 235 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~s-rs~~---~G---------~qr~~~~w--~GD~~ 235 (325)
..-.|+.+ ++ ++ +...||++.| |+-- .+ .+.++..| .+|+.
T Consensus 172 ----------------~~~~Yp~m-s~----aL---N~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~ 227 (414)
T KOG2366|consen 172 ----------------MPEGYPIM-SR----AL---NNTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQ 227 (414)
T ss_pred ----------------ccccchhH-HH----HH---hccCCceEEEeccCcccccCccCCCcchhhhhhhccccchhhhh
Confidence 11123222 11 22 3467999999 5521 22 23444566 58999
Q ss_pred CCchHHHHHHHHHHHccccCCCcccccCCCCCCC---------CChhHHHHHHHhhcc
Q 020492 236 SNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN---------ATPRLFGRWMGIGAM 284 (325)
Q Consensus 236 s~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~---------~~~eL~~RW~q~~af 284 (325)
.+|..+...|...-.+.=.=.|.-|+ ||+... -+.|+|. .||+.+
T Consensus 228 dtW~Sv~~I~d~~~~nqd~~~~~agP--g~WNDpDmL~iGN~G~s~e~y~--~qf~lW 281 (414)
T KOG2366|consen 228 DTWKSVDSIIDYICWNQDRIAPLAGP--GGWNDPDMLEIGNGGMSYEEYK--GQFALW 281 (414)
T ss_pred hHHHHHHHHHHHHhhhhhhhccccCC--CCCCChhHhhcCCCCccHHHHH--HHHHHH
Confidence 99998877776555555555677776 776531 3678887 566655
No 31
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=98.07 E-value=2.8e-05 Score=77.85 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=82.6
Q ss_pred hhhcCCCC---CHHHHHHHHHHHHhcCCCceEEEEecccCCCc--------------------eeeeecCCCCC------
Q 020492 10 HQCRWSYD---SDKRVREICRTFREKGIPCDVIWMDIDYMDGF--------------------RCFTFDKERFP------ 60 (325)
Q Consensus 10 ~~s~~~y~---~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~--------------------~~f~~d~~~FP------ 60 (325)
|++++.|+ |++.|++.++.+.+.++|+..+.||++||.-. ..|+-|+ |||
T Consensus 207 WCTW~afy~~Vt~~~I~~~l~~l~~~g~p~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~~n~-KF~~~~~~~ 285 (758)
T PLN02355 207 WCTWDAFYTNVTAEGVKQGLESLEKGGVTPKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIKENH-KFQKNGKEG 285 (758)
T ss_pred EEehhHhhccCCHHHHHHHHHHHHhCCCCccEEEEeccccccccccccccccccccchhhhhhccccccc-ccccccccc
Confidence 34444443 68999999999999999999999999998621 1233333 666
Q ss_pred --------ChHHHHHHHHH-CCCEEE-eeeC-----CccccCCC-cccccccc-----ccceeeecCCCCceeeeecCCC
Q 020492 61 --------DPKSLAADLHL-NGFKAI-WMLD-----PGIKHEDG-YFVYDSGS-----KIDVWIQKADGTPFIGEVWPGP 119 (325)
Q Consensus 61 --------d~~~~~~~L~~-~G~k~~-~~~~-----P~i~~~~~-~~~~~~~~-----~~~~~~~~~~g~~~~~~~w~g~ 119 (325)
+++.+++.||+ .|+|.+ +|-. =.|.++.. ...|+... .+++....++.... ..-++.
T Consensus 286 ~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~~~~~a~d--~i~~~G 363 (758)
T PLN02355 286 HRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSNEPCDALE--SITTNG 363 (758)
T ss_pred ccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCcccccCcchhhh--hcccCc
Confidence 57899999997 588854 5632 11222211 11232211 11121111111000 000111
Q ss_pred ccCCCCCChH-HHHHHHHHHHhhhhCCccEEEecCC
Q 020492 120 CVFPDYTQSK-VRSWWGSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 120 ~~~~Df~~p~-a~~w~~~~~~~~~~~Gvdg~~~D~~ 154 (325)
...+ +|+ +..+|.+.+..|.+.||||+|.|..
T Consensus 364 ~glv---~Pe~~~~FY~~~hsyL~s~GVDgVKVD~Q 396 (758)
T PLN02355 364 LGLV---NPEKVFSFYNELHSYLASAGIDGVKVDVQ 396 (758)
T ss_pred eecc---CHHHHHHHHHHHHHHHHHcCCCeEEEchh
Confidence 2233 344 6788999999999999999999975
No 32
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=97.92 E-value=8.1e-05 Score=74.51 Aligned_cols=148 Identities=20% Similarity=0.271 Sum_probs=86.1
Q ss_pred CccchhhhhhcC-CCC---CHHHHHHHHHHHHhcCCCceEEEEecccCCC--------------------ceeeeecC--
Q 020492 3 PKWSLGYHQCRW-SYD---SDKRVREICRTFREKGIPCDVIWMDIDYMDG--------------------FRCFTFDK-- 56 (325)
Q Consensus 3 P~walG~~~s~~-~y~---~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--------------------~~~f~~d~-- 56 (325)
|.|-=||=.|.| .|+ |++.|++.++.+.+.++|+..++||++||.- ...|+-|+
T Consensus 195 p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~f~en~KF 274 (775)
T PLN02219 195 PSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPPKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTGIKENAKF 274 (775)
T ss_pred ccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCCceEEEEccCccccccccccccccccccchhhhhhccccccccc
Confidence 444444433444 443 6899999999999999999999999999852 11232222
Q ss_pred ------CCCCC-hHHHHHHHHH-CCCEEE-eeeC-----CccccCC-CccccccccccceeeecCC--C-Cceee--eec
Q 020492 57 ------ERFPD-PKSLAADLHL-NGFKAI-WMLD-----PGIKHED-GYFVYDSGSKIDVWIQKAD--G-TPFIG--EVW 116 (325)
Q Consensus 57 ------~~FPd-~~~~~~~L~~-~G~k~~-~~~~-----P~i~~~~-~~~~~~~~~~~~~~~~~~~--g-~~~~~--~~w 116 (325)
..||. ++.+++.+|+ .|+|.+ +|-. =.|.++. ....|+... .+-+..++ + .|-+. ..-
T Consensus 275 ~~~~~~~~fp~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~--~~p~~spg~~~~~pd~a~d~l~ 352 (775)
T PLN02219 275 QKNDQKNEQVSGLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSAL--AYPVQSPGVLGNQPDIVMDSLS 352 (775)
T ss_pred cccccccCCCCcHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccc--cccccCCCccccCcchhhhhhh
Confidence 13665 7999999997 588854 5632 1222221 112233211 11111111 0 01000 000
Q ss_pred CCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCC
Q 020492 117 PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 117 ~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~ 154 (325)
.+....+| ..++..+|.+.+..|.+.||||+|.|..
T Consensus 353 ~~G~glV~--P~~~~~FYd~~hsyLas~GVDgVKVDvQ 388 (775)
T PLN02219 353 VHGLGLVN--PKKVFNFYNELHAYLASCGVDGVKVDVQ 388 (775)
T ss_pred hCCccccC--HHHHHHHHHHHHHHHHHcCCCEEEEchh
Confidence 01123343 2457799999999999999999999965
No 33
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.87 E-value=0.00023 Score=57.23 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCCCceEEEEecccCCCceeeeecCC----CC----CC-hHHHHHHHHHCCCEEEeeeCCccccCCCccc
Q 020492 22 VREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKE----RF----PD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYFV 92 (325)
Q Consensus 22 v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~----~F----Pd-~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~ 92 (325)
..++++.+++.++ +++.+... ..+.+.+=++ +- .| +.++++.+|+.|+|++..++... ++ .+
T Consensus 2 ~~~~~~~lk~~~v--~si~i~a~---~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~--d~--~~ 72 (132)
T PF14871_consen 2 PEQFVDTLKEAHV--NSITIFAK---CHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSW--DE--DA 72 (132)
T ss_pred HHHHHHHHHHhCC--CEEEEEcc---cccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeec--Ch--HH
Confidence 3567888888886 77777533 0011111010 11 25 48999999999999999988762 22 23
Q ss_pred cccccccceeeecCCCCceeeeecCCC-ccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecC
Q 020492 93 YDSGSKIDVWIQKADGTPFIGEVWPGP-CVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDM 153 (325)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~~w~g~-~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~ 153 (325)
++ .++++++++++|+|......... ....-+ |..-++....+++.+++ .++||+++|+
T Consensus 73 ~~--~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~-ns~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 73 AE--RHPEWFVRDADGRPMRGERFGYPGWYTCCL-NSPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred HH--hCCceeeECCCCCCcCCCCcCCCCceecCC-CccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 44 78999999999986322211111 122333 34556888888888876 8999999995
No 34
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=97.86 E-value=0.00011 Score=73.43 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=85.9
Q ss_pred CccchhhhhhcC-CCC---CHHHHHHHHHHHHhcCCCceEEEEecccCCCce-------------------eeeecCCCC
Q 020492 3 PKWSLGYHQCRW-SYD---SDKRVREICRTFREKGIPCDVIWMDIDYMDGFR-------------------CFTFDKERF 59 (325)
Q Consensus 3 P~walG~~~s~~-~y~---~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~-------------------~f~~d~~~F 59 (325)
|.|.=||=.|.| .|+ +++.|++.++.+.+.++|+..+.||++||.-.+ .|+- .++|
T Consensus 198 P~~~D~fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~e-n~KF 276 (750)
T PLN02684 198 PGIVDYFGWCTWDAFYQEVTQEGVEAGLKSLAAGGTPPKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKE-NEKF 276 (750)
T ss_pred ccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCCceEEEEecccccccccccccccccccchhhhhhccCcc-cccc
Confidence 444445533444 443 689999999999999999999999999986321 1222 2456
Q ss_pred C-------ChHHHHHHHHH-CCCEEE-eeeC-----CccccCCC-cccccccc-----ccceeeecCC--CCceeeeecC
Q 020492 60 P-------DPKSLAADLHL-NGFKAI-WMLD-----PGIKHEDG-YFVYDSGS-----KIDVWIQKAD--GTPFIGEVWP 117 (325)
Q Consensus 60 P-------d~~~~~~~L~~-~G~k~~-~~~~-----P~i~~~~~-~~~~~~~~-----~~~~~~~~~~--g~~~~~~~w~ 117 (325)
| +++.+++.|++ .|+|.+ +|-. =.|.++.. ...|+..+ .++.....++ ++... -+
T Consensus 277 ~~~~~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l~---~~ 353 (750)
T PLN02684 277 KKKDDPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVMT---LQ 353 (750)
T ss_pred ccccCCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCccccccccc---cC
Confidence 5 57999999985 588854 5632 12222211 11232111 1122222221 11000 00
Q ss_pred CCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCC
Q 020492 118 GPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 118 g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~ 154 (325)
| ...+|- .++..+|.+.+..|.+.||||+|.|..
T Consensus 354 g-~glv~P--~~~~~FYd~~hsyL~s~GVDgVKVD~Q 387 (750)
T PLN02684 354 G-LGLVNP--KKVYKFYNELHSYLADAGIDGVKVDVQ 387 (750)
T ss_pred c-ccccCH--HHHHHHHHHHHHHHHHcCCCeEEEChh
Confidence 1 122331 456789999999999999999999975
No 35
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=97.81 E-value=0.0002 Score=71.82 Aligned_cols=131 Identities=13% Similarity=0.074 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCc-------------------------eeeeec---------CCCCC-Ch
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGF-------------------------RCFTFD---------KERFP-DP 62 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~-------------------------~~f~~d---------~~~FP-d~ 62 (325)
+++.|++-++.+++.|+|...++||++||.-- ..|+-| ++.|| ++
T Consensus 228 t~egI~~gl~~L~~~Gip~~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en~KF~~~~~~~~~~p~Gl 307 (777)
T PLN02711 228 HPQGVWEGVKGLVDGGCPPGLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENYKFRDYVSPKSLSNKGM 307 (777)
T ss_pred CHHHHHHHHHHHHhCCCCccEEEEcCCcccccccCcccccccccccccccchhhhhhccccccccccccccccCCCCCcH
Confidence 68999999999999999999999999998511 012222 22344 36
Q ss_pred HHHHHHHHHC--CCEEE-eeeC-----CccccCCCccccccccccceeeecCCCC----ceee--eecCCCccCCCCCCh
Q 020492 63 KSLAADLHLN--GFKAI-WMLD-----PGIKHEDGYFVYDSGSKIDVWIQKADGT----PFIG--EVWPGPCVFPDYTQS 128 (325)
Q Consensus 63 ~~~~~~L~~~--G~k~~-~~~~-----P~i~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~--~~w~g~~~~~Df~~p 128 (325)
+.+++.||++ |+|.+ +|-. =.|.++.. ...++ +-+..+...|. +-+. ..-.+...++|- .
T Consensus 308 k~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~--~~~~~--~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~P--e 381 (777)
T PLN02711 308 GAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVP--GLPES--KVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPP--E 381 (777)
T ss_pred HHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCC--CCccc--eeeccccCcccccccccccccccccCcccccCH--H
Confidence 8889999995 68754 5632 11222211 00000 00111111110 0000 000011222331 3
Q ss_pred HHHHHHHHHHHhhhhCCccEEEecCC
Q 020492 129 KVRSWWGSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 129 ~a~~w~~~~~~~~~~~Gvdg~~~D~~ 154 (325)
++.++|.+.+..|.+.||||+|.|..
T Consensus 382 ~~~~FY~~~hs~Las~GVDgVKVDvQ 407 (777)
T PLN02711 382 LAYQMYEGLHSHLQSVGIDGVKVDVI 407 (777)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEchh
Confidence 45788999999999999999999954
No 36
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.53 E-value=0.0011 Score=61.23 Aligned_cols=134 Identities=16% Similarity=0.240 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEecccCCC------ceee----eecCCCCC--C-hHHHHHHHHHCCCEEEeeeCC
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWMDIDYMDG------FRCF----TFDKERFP--D-PKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~------~~~f----~~d~~~FP--d-~~~~~~~L~~~G~k~~~~~~P 82 (325)
+.+.+++.++++.+++.|+ -+|.++.-..++ .-.+ +-...+=| | ++.+|++-|++|+++--|+..
T Consensus 15 ~~~~~~~~~~l~~l~~~~~--N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~ 92 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGF--NAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRV 92 (311)
T ss_pred CCCHHHHHHHHHHHHHcCC--CEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEe
Confidence 3478899999999999995 556555433221 1111 00111111 3 489999999999999999843
Q ss_pred ccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecC
Q 020492 83 GIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDM 153 (325)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~ 153 (325)
.+.......+.+ .+...+..+..|....-..-.+...++|..+||++++..+.++.+++ ..|||+-+|-
T Consensus 93 ~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILK--KHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhh--cCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 332221111111 22233332222221111011244668999999999999999999885 7999999993
No 37
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=97.51 E-value=0.00095 Score=66.52 Aligned_cols=133 Identities=15% Similarity=0.186 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEEecccCCC---c----ee-eeecCCCCC---ChHHHHHHHHHCCCEEEeeeCC-cc
Q 020492 17 DSDKRVREICRTFREKGIPCDVIWMDIDYMDG---F----RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GI 84 (325)
Q Consensus 17 ~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~---~----~~-f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P-~i 84 (325)
.+-..|.+-++.+++.|| ++|||-+-+... . .+ +.+|+ +|- +++++|+.+|++|+|+++-+.+ ++
T Consensus 25 Gdl~gi~~~Ldyl~~LGv--~~i~L~Pi~~~~~~~~gY~~~dy~~vd~-~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~ 101 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGV--DALWLLPFFQSPLRDDGYDVSDYRAILP-EFGTIDDFKDFVDEAHARGMRVIIDLVLNHT 101 (539)
T ss_pred cCHHHHHHhHHHHHHCCC--CEEEECCCcCCCCCCCCCCcccccccCh-hhCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 355677777888877665 889887654321 1 22 24443 454 3689999999999999997665 34
Q ss_pred ccCCCcccccc------ccccceeeecCCCCceee----------eecC--------------CCccCCCCCChHHHHHH
Q 020492 85 KHEDGYFVYDS------GSKIDVWIQKADGTPFIG----------EVWP--------------GPCVFPDYTQSKVRSWW 134 (325)
Q Consensus 85 ~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~----------~~w~--------------g~~~~~Df~~p~a~~w~ 134 (325)
+.+. +.|++ ....++|+....+..+.. ..|. ....-+|+.||++++..
T Consensus 102 s~~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l 179 (539)
T TIGR02456 102 SDQH--PWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAV 179 (539)
T ss_pred CCCC--HHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHH
Confidence 3322 12211 112344543222211110 1121 11224789999999999
Q ss_pred HHHHHhhhhCCccEEEecCC
Q 020492 135 GSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 135 ~~~~~~~~~~Gvdg~~~D~~ 154 (325)
.+.++.+++.|||||-+|..
T Consensus 180 ~~~~~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 180 HDVMRFWLDLGVDGFRLDAV 199 (539)
T ss_pred HHHHHHHHHcCCCEEEEecH
Confidence 99999999999999999964
No 38
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.51 E-value=0.0016 Score=60.03 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=88.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeec------------CCCCCChHHHHHHHHHCCCEEEeee
Q 020492 13 RWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFD------------KERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 13 ~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d------------~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
.+.-.+.+.+.++++.+++.++ .+++||.- ++.|..+++ +....|++++++.||++|+.++-.+
T Consensus 6 ~~~a~~~~~~~~~~~~i~~t~l--NavVIDvK--dd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 6 AYSAGSPERLDKLLDLIKRTEL--NAVVIDVK--DDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred hhhcCCHHHHHHHHHHHHhcCC--ceEEEEEe--cCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 3344466778889999888886 77888843 222322221 2223789999999999999988776
Q ss_pred CCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCC
Q 020492 81 DPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 155 (325)
Q Consensus 81 ~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e 155 (325)
.-|= +. ..- ....++-+++.+|++.... ....++|.++++++++-.+..+...+.|||.+-+|.-.
T Consensus 82 v~Fk--D~---~la-~~~pe~av~~~~G~~w~d~---~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIR 147 (316)
T PF13200_consen 82 VVFK--DP---VLA-EAHPEWAVKTKDGSVWRDN---EGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIR 147 (316)
T ss_pred EEec--Ch---HHh-hhChhhEEECCCCCcccCC---CCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeee
Confidence 5331 11 111 1245566666676543311 12568999999999999998888889999999999754
No 39
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=97.37 E-value=0.0016 Score=65.78 Aligned_cols=146 Identities=21% Similarity=0.343 Sum_probs=82.6
Q ss_pred CccchhhhhhcCC--C--CCHHHHHHHHHHHHhcCCCceEEEEecccCCCce-----------------ee-----eec-
Q 020492 3 PKWSLGYHQCRWS--Y--DSDKRVREICRTFREKGIPCDVIWMDIDYMDGFR-----------------CF-----TFD- 55 (325)
Q Consensus 3 P~walG~~~s~~~--y--~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~-----------------~f-----~~d- 55 (325)
|.|.=+|=.|.|. | -+++.|++.++.+++.|||...++||++||.-.. .| .++
T Consensus 191 P~~~d~lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~e 270 (747)
T PF05691_consen 191 PEFLDGLGWCTWDAFYQDVTEEGILEGLKSLEEGGIPPRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKE 270 (747)
T ss_pred hhhhhhhccccHHHhccccCHHHHHHHHHHHHhCCCCceEEEEecchhcccccCcccccccccccccccccchhhhhhhh
Confidence 3344344344542 2 2679999999999999999999999999984110 11 010
Q ss_pred ------------CCCCCC-hHHHHHHHHHC--CCEEE-eeeC-----CccccCCCccccccc-----cccceeeecCCCC
Q 020492 56 ------------KERFPD-PKSLAADLHLN--GFKAI-WMLD-----PGIKHEDGYFVYDSG-----SKIDVWIQKADGT 109 (325)
Q Consensus 56 ------------~~~FPd-~~~~~~~L~~~--G~k~~-~~~~-----P~i~~~~~~~~~~~~-----~~~~~~~~~~~g~ 109 (325)
.+.||. ++.++++||++ |+|.+ +|-. =.|.++.. ..|+.. ..++.....++-
T Consensus 271 n~kF~~~~~~~~~~~~~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~-~~~~~k~~~~~~spg~~~~~~d~- 348 (747)
T PF05691_consen 271 NSKFRAYKSGKSPEAFPSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGM-LAYNYKLVYPKLSPGLQGNMPDL- 348 (747)
T ss_pred hhhhhhccCCCcccCCcccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCc-cccccceeecccCCcccccCccc-
Confidence 124664 79999999998 78754 5642 12333221 111100 000100000000
Q ss_pred ceeeeecCCCccCCCCCCh-HHHHHHHHHHHhhhhCCccEEEecCC
Q 020492 110 PFIGEVWPGPCVFPDYTQS-KVRSWWGSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 110 ~~~~~~w~g~~~~~Df~~p-~a~~w~~~~~~~~~~~Gvdg~~~D~~ 154 (325)
.....-.+....+ +| ++..+|.+.+..|.+.||||+|.|..
T Consensus 349 -~~d~~~~~g~glv---~p~~~~~FYd~~hsyL~s~GVDgVKVD~Q 390 (747)
T PF05691_consen 349 -AVDSIVKGGLGLV---DPEDAFRFYDDFHSYLASAGVDGVKVDVQ 390 (747)
T ss_pred -cccccccCccccc---CHHHHHHHHHHHHHHHHHcCCCEEEEchh
Confidence 0000000111122 34 56789999999999999999999965
No 40
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.0024 Score=60.69 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHhcCCC-ceEEEEecccC---CCceeeeec------CCCCCC-hHHHHHHHHHCCCEEEeeeCCcc
Q 020492 16 YDSDKRVREICRTFREKGIP-CDVIWMDIDYM---DGFRCFTFD------KERFPD-PKSLAADLHLNGFKAIWMLDPGI 84 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP-~d~i~iD~~w~---~~~~~f~~d------~~~FPd-~~~~~~~L~~~G~k~~~~~~P~i 84 (325)
-.+++++.+.++++++.|+. +-..+..+++. +...-++-+ ....=| ++.+|++-|++|+++..|+.|+.
T Consensus 60 ~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 60 LFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 35789999999999999986 33333333442 222222222 122234 48999999999999999999976
Q ss_pred ccCCCccccccccccceeeecCCCCceee-eecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCC
Q 020492 85 KHEDGYFVYDSGSKIDVWIQKADGTPFIG-EVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~ 154 (325)
....... ....+........+|..+.- ..|- ...++|-.+||+++|..+.+-.++. +.|||+-+|--
T Consensus 140 ~a~~~s~--~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~ 208 (418)
T COG1649 140 MAPPTSP--LTKRHPHWLTTKRPGWVYVRHQGWG-KRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDY 208 (418)
T ss_pred cCCCCCh--hHhhCCCCcccCCCCeEEEecCCce-eeeEeCCCChHHHHHHHHHHHHHHhCCCCCceeccee
Confidence 5432111 11233444444434433221 1110 4677999999999999999887774 89999999853
No 41
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=97.35 E-value=0.0025 Score=63.61 Aligned_cols=133 Identities=17% Similarity=0.277 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCC-----c--ee-eeecCCCCC---ChHHHHHHHHHCCCEEEeeeCC-ccc
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDG-----F--RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIK 85 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~-----~--~~-f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P-~i~ 85 (325)
+-..|.+-++.+++.|| ++|||-+-+... + .+ +..|+ +|- ++++||+.+|++|+|+++-+.+ +++
T Consensus 31 dl~gi~~~ldyl~~lGv--~~i~l~P~~~~~~~~~gY~~~d~~~id~-~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s 107 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGV--DAIWLTPFYVSPQVDNGYDVANYTAIDP-TYGTLDDFDELVAQAKSRGIRIILDMVFNHTS 107 (551)
T ss_pred CHHHHHHhhHHHHhCCC--CEEEECCCCCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 45667788888887775 889887654321 1 12 23332 444 4799999999999999987665 333
Q ss_pred cCCCccccccc-----cccceeeecC--CCC---cee----eee--cC------------CCccCCCCCChHHHHHHHHH
Q 020492 86 HEDGYFVYDSG-----SKIDVWIQKA--DGT---PFI----GEV--WP------------GPCVFPDYTQSKVRSWWGSL 137 (325)
Q Consensus 86 ~~~~~~~~~~~-----~~~~~~~~~~--~g~---~~~----~~~--w~------------g~~~~~Df~~p~a~~w~~~~ 137 (325)
.+.. -|.++ .-.++++-.. .+. .+. +.. |. ....-+|+.||++++...+.
T Consensus 108 ~~~~--wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~ 185 (551)
T PRK10933 108 TQHA--WFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKV 185 (551)
T ss_pred Cchh--HHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHH
Confidence 3221 12111 1123333211 000 000 000 11 01234778999999999999
Q ss_pred HHhhhhCCccEEEecCCC
Q 020492 138 VKDFIYNGVDGIWNDMNE 155 (325)
Q Consensus 138 ~~~~~~~Gvdg~~~D~~e 155 (325)
++.+++.|||||-+|...
T Consensus 186 ~~~W~~~GvDGfRlDa~~ 203 (551)
T PRK10933 186 CEFWADRGVDGLRLDVVN 203 (551)
T ss_pred HHHHHHCCCcEEEEcchh
Confidence 999889999999999654
No 42
>PLN00196 alpha-amylase; Provisional
Probab=97.28 E-value=0.0066 Score=58.61 Aligned_cols=134 Identities=18% Similarity=0.226 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCC----Cc---eeeeecCCCCCC---hHHHHHHHHHCCCEEEeeeCC-ccccC
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMD----GF---RCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHE 87 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~---~~f~~d~~~FPd---~~~~~~~L~~~G~k~~~~~~P-~i~~~ 87 (325)
-..|.+-++.+++.|| ++|||-+-..+ ++ ..|..|+.+|-+ +++||+.+|++|+|+++-+.+ +...+
T Consensus 43 ~~~i~~kldyL~~LGv--taIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~ 120 (428)
T PLN00196 43 YNFLMGKVDDIAAAGI--THVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAE 120 (428)
T ss_pred HHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccc
Confidence 4668888888888886 88998865432 12 125666667864 799999999999999987654 33221
Q ss_pred CC-----cccccccc---ccceeee--cCCCCcee---e--eecCCCcc--CCCCCChHHHHHHHHHHHhhh-hCCccEE
Q 020492 88 DG-----YFVYDSGS---KIDVWIQ--KADGTPFI---G--EVWPGPCV--FPDYTQSKVRSWWGSLVKDFI-YNGVDGI 149 (325)
Q Consensus 88 ~~-----~~~~~~~~---~~~~~~~--~~~g~~~~---~--~~w~g~~~--~~Df~~p~a~~w~~~~~~~~~-~~Gvdg~ 149 (325)
.. +..+..+. ..+++.. ..+.+.+. + ..|.+-.. -+|..||++++...+.++-+. +.|||||
T Consensus 121 ~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~ 200 (428)
T PLN00196 121 HKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAW 200 (428)
T ss_pred cccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEE
Confidence 10 11121110 0111100 00000000 0 11111122 367889999999998887775 5899999
Q ss_pred EecCC
Q 020492 150 WNDMN 154 (325)
Q Consensus 150 ~~D~~ 154 (325)
-+|..
T Consensus 201 RlD~a 205 (428)
T PLN00196 201 RLDFA 205 (428)
T ss_pred Eeehh
Confidence 99976
No 43
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=97.23 E-value=0.0007 Score=61.78 Aligned_cols=132 Identities=22% Similarity=0.413 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCC-----Cc--ee-eeecCCCCC---ChHHHHHHHHHCCCEEEeeeCC-ccccC
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMD-----GF--RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIKHE 87 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~-----~~--~~-f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P-~i~~~ 87 (325)
.-|.+-++.+++.|| ++||+-+-+.. ++ .+ +.+|+ +|- ++++||+.+|++|+|+++-+.+ +++..
T Consensus 4 ~gi~~kLdyl~~lGv--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGV--NAIWLSPIFESPNGYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp HHHHHTHHHHHHHTE--SEEEESS-EESSSSTTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred HHHHHhhHHHHHcCC--Cceecccccccccccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 456777888888775 88887643322 11 23 34555 565 4799999999999999998766 34333
Q ss_pred CCcc----ccccccccceeeec-----C--------CCCceeeeecC------CCccCCCCCChHHHHHHHHHHHhhhhC
Q 020492 88 DGYF----VYDSGSKIDVWIQK-----A--------DGTPFIGEVWP------GPCVFPDYTQSKVRSWWGSLVKDFIYN 144 (325)
Q Consensus 88 ~~~~----~~~~~~~~~~~~~~-----~--------~g~~~~~~~w~------g~~~~~Df~~p~a~~w~~~~~~~~~~~ 144 (325)
...+ ........+++... + ++..+....+. ....-+|+.||++++...+.++..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~~ 160 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIEE 160 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhhc
Confidence 2110 00011123333311 0 11112211111 112347889999999999999999999
Q ss_pred CccEEEecCC
Q 020492 145 GVDGIWNDMN 154 (325)
Q Consensus 145 Gvdg~~~D~~ 154 (325)
|||||-+|..
T Consensus 161 giDGfR~D~~ 170 (316)
T PF00128_consen 161 GIDGFRLDAA 170 (316)
T ss_dssp TESEEEETTG
T ss_pred eEeEEEEccc
Confidence 9999999975
No 44
>PRK10785 maltodextrin glucosidase; Provisional
Probab=97.18 E-value=0.0044 Score=62.51 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCC--Cc----ee-eeecCCCCC---ChHHHHHHHHHCCCEEEeeeCC-cccc
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMD--GF----RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIKH 86 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~--~~----~~-f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P-~i~~ 86 (325)
+-+-|.+-++-++++|| ++|+|-+=... .+ .+ +..|+ .|. +++++++.+|++|+|+++-+.+ +++.
T Consensus 177 Dl~GI~~kLdYL~~LGv--~~I~L~Pif~s~s~hgYd~~Dy~~iDp-~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGV--TALYLNPIFTAPSVHKYDTEDYRHVDP-QLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCcccCCCCCCcCcccccccCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 56778888888888776 88998865432 11 12 23443 444 4799999999999999997654 3333
Q ss_pred CCCcccccc-------------ccccceeeecCCCCceeeeecCCCcc--CCCCCChHHHHHHHH----HHHhhhh--CC
Q 020492 87 EDGYFVYDS-------------GSKIDVWIQKADGTPFIGEVWPGPCV--FPDYTQSKVRSWWGS----LVKDFIY--NG 145 (325)
Q Consensus 87 ~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~w~g~~~--~~Df~~p~a~~w~~~----~~~~~~~--~G 145 (325)
+.. .|+. ....++|.-+.+|. + ..|.|... -+|+.||+++++..+ .++..++ .|
T Consensus 254 ~~~--~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~-~--~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~g 328 (598)
T PRK10785 254 SHP--WFDRHNRGTGGACHHPDSPWRDWYSFSDDGR-A--LDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYN 328 (598)
T ss_pred CCH--HHHHhhccccccccCCCCCcceeeEECCCCC-c--CCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCC
Confidence 321 1211 11224554444332 1 24544433 356889999998774 6777776 49
Q ss_pred ccEEEecCC
Q 020492 146 VDGIWNDMN 154 (325)
Q Consensus 146 vdg~~~D~~ 154 (325)
||||-+|..
T Consensus 329 iDG~RlDva 337 (598)
T PRK10785 329 IDGWRLDVV 337 (598)
T ss_pred CcEEEEecH
Confidence 999999976
No 45
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=97.07 E-value=0.0069 Score=60.42 Aligned_cols=134 Identities=19% Similarity=0.324 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEEecccCCC-----c--ee-eeecCCCCC---ChHHHHHHHHHCCCEEEeeeCC-cc
Q 020492 17 DSDKRVREICRTFREKGIPCDVIWMDIDYMDG-----F--RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GI 84 (325)
Q Consensus 17 ~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~-----~--~~-f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P-~i 84 (325)
.+-..|.+.++.+++.|+ ++|||-+-+... + .+ +.+|+ +|. +++.+++.+|++|+|+++-+.| ++
T Consensus 24 G~~~gi~~~l~yl~~lG~--~~i~l~Pi~~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGV--DYIWLNPFYVSPQKDNGYDVSDYYAINP-LFGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred cCHHHHHHhHHHHHHcCC--CEEEECCcccCCCCCCCCCccccCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 355677777888877665 889988665432 1 12 34454 354 4789999999999999997665 34
Q ss_pred ccCCCccccccc-----cccceeeec-CCCCc---ee----eeecCC--------------CccCCCCCChHHHHHHHHH
Q 020492 85 KHEDGYFVYDSG-----SKIDVWIQK-ADGTP---FI----GEVWPG--------------PCVFPDYTQSKVRSWWGSL 137 (325)
Q Consensus 85 ~~~~~~~~~~~~-----~~~~~~~~~-~~g~~---~~----~~~w~g--------------~~~~~Df~~p~a~~w~~~~ 137 (325)
+.+.. -+.++ .-.++|+-. ..|.+ +. +..|.. ...-+|+.||++++...+.
T Consensus 101 ~~~~~--~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~ 178 (543)
T TIGR02403 101 STEHE--WFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDV 178 (543)
T ss_pred ccchH--HHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHH
Confidence 33221 11111 112333221 11111 00 111221 1224788999999999999
Q ss_pred HHhhhhCCccEEEecCCC
Q 020492 138 VKDFIYNGVDGIWNDMNE 155 (325)
Q Consensus 138 ~~~~~~~Gvdg~~~D~~e 155 (325)
++.+++.|||||-+|...
T Consensus 179 ~~~W~~~giDGfRlDa~~ 196 (543)
T TIGR02403 179 VNFWRDKGVDGFRLDVIN 196 (543)
T ss_pred HHHHHHcCCCEEEEeeeh
Confidence 998888999999999763
No 46
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=97.04 E-value=0.0063 Score=61.53 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHCCCEEEeeeCC-ccccCCCccccccccccceeee-cCCCCceeeeecCCCccCCCCCChHHHHHHHHHH
Q 020492 61 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGSKIDVWIQ-KADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 138 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~P-~i~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~ 138 (325)
++++||+.+|++|++|++-+.+ +..... ...|+. ...+++.+ +.+|.... +.|-..-++..+|+++++..+.+
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~-~~~f~~-~~~~~~~~~~~~g~~~~---~~g~~~~~~~~~~~v~~~i~~~~ 304 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSRE-ESPFEK-TVPGYYYRYNEDGTLSN---GTGVGNDTASEREMMRKFIVDSV 304 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCC-CCcccC-CCCCeeEEECCCCCccC---CCcccCCcccCCHHHHHHHHHHH
Confidence 4899999999999999997654 332211 123332 22345543 44443211 11112246788999999999999
Q ss_pred Hhhhh-CCccEEEecCC
Q 020492 139 KDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 139 ~~~~~-~Gvdg~~~D~~ 154 (325)
+..++ .|||||-+|..
T Consensus 305 ~~W~~e~~iDGfR~D~~ 321 (605)
T TIGR02104 305 LYWVKEYNIDGFRFDLM 321 (605)
T ss_pred HHHHHHcCCCEEEEech
Confidence 88875 89999999965
No 47
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.98 E-value=0.01 Score=60.02 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=75.4
Q ss_pred CHHHHHHH-HHHHHhcCCCceEEEEecccC----CCc-----eeeeecCCCCC---ChHHHHHHHHHCCCEEEeeeCC-c
Q 020492 18 SDKRVREI-CRTFREKGIPCDVIWMDIDYM----DGF-----RCFTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-G 83 (325)
Q Consensus 18 ~~~~v~~~-~~~~~~~~iP~d~i~iD~~w~----~~~-----~~f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P-~ 83 (325)
+-..+.+- ++.++++|| .+|+|-+-.. ..+ ..|..+ .+|. ++++||+.+|++|++|++-+.+ +
T Consensus 154 ~~~~i~~~l~dyl~~LGv--t~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH 230 (613)
T TIGR01515 154 SYRELADQLIPYVKELGF--THIELLPVAEHPFDGSWGYQVTGYYAPT-SRFGTPDDFMYFVDACHQAGIGVILDWVPGH 230 (613)
T ss_pred CHHHHHHHHHHHHHHcCC--CEEEECCcccCCCCCCCCCCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccC
Confidence 34444444 477788776 6677643211 011 124443 3666 4799999999999999998765 4
Q ss_pred cccCCC-ccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCC
Q 020492 84 IKHEDG-YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 84 i~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~ 154 (325)
+..+.. ...|+ ...-++..++.. . ....|. ..-+|+.+|+++++..+.++.+++ .|||||-+|..
T Consensus 231 ~~~~~~~~~~~~--~~~~y~~~~~~~-~-~~~~w~--~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 231 FPKDDHGLAEFD--GTPLYEHKDPRD-G-EHWDWG--TLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAV 297 (613)
T ss_pred cCCccchhhccC--CCcceeccCCcc-C-cCCCCC--CceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCH
Confidence 433221 11111 001111111110 0 011232 234799999999999999998885 79999999974
No 48
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.60 E-value=0.027 Score=57.37 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=73.8
Q ss_pred HHHH-HHHHHHHhcCCCceEEEEecccCC------Cc---eeeeecCCCCC---ChHHHHHHHHHCCCEEEeeeCC-ccc
Q 020492 20 KRVR-EICRTFREKGIPCDVIWMDIDYMD------GF---RCFTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIK 85 (325)
Q Consensus 20 ~~v~-~~~~~~~~~~iP~d~i~iD~~w~~------~~---~~f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P-~i~ 85 (325)
..+. ++++.++++|+ ++|+|-+=+.. ++ .-|..++ +|- +++.||+.+|++|++|++-+.| +..
T Consensus 170 ~~~~~~ll~yl~~LGv--~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~ 246 (633)
T PRK12313 170 RELADELIPYVKEMGY--THVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYGTPEDFMYLVDALHQNGIGVILDWVPGHFP 246 (633)
T ss_pred HHHHHHHHHHHHHcCC--CEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 4444 34688888886 66776532211 11 1233433 454 3699999999999999997665 333
Q ss_pred cCCC-ccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCCC
Q 020492 86 HEDG-YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 155 (325)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~e 155 (325)
.+.. ...|+. ...+...++.. .+ ...|.. .-+|+.||+++++..+.++..++ .|||||-+|...
T Consensus 247 ~~~~~~~~~~~--~~~~~~~~~~~-~~-~~~w~~--~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~ 312 (633)
T PRK12313 247 KDDDGLAYFDG--TPLYEYQDPRR-AE-NPDWGA--LNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVS 312 (633)
T ss_pred CCcccccccCC--CcceeecCCCC-Cc-CCCCCC--cccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChh
Confidence 2221 011110 00111111111 10 112322 34799999999999999988876 699999999754
No 49
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=96.51 E-value=0.05 Score=53.48 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCCCChHHHHHHHHHHHhhhh-CCccEEEecCCC
Q 020492 123 PDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 155 (325)
Q Consensus 123 ~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~e 155 (325)
+|..||++++...+.++.+++ .|||||-+|...
T Consensus 203 Ln~~np~V~~~l~~~~~~w~~~~giDGfRlDavk 236 (479)
T PRK09441 203 IDFRHPEVREELKYWAKWYMETTGFDGFRLDAVK 236 (479)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhc
Confidence 567789999999999998887 899999999754
No 50
>PRK03705 glycogen debranching enzyme; Provisional
Probab=96.49 E-value=0.012 Score=59.72 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHCCCEEEeeeCC-ccccC---CCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHH
Q 020492 61 DPKSLAADLHLNGFKAIWMLDP-GIKHE---DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 136 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~P-~i~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~ 136 (325)
++++||+.+|++|++|++-+.. +.... ..+..++......++..+.+|.. ..|.+-..-+++.+|+++++..+
T Consensus 243 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~---~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 243 EFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDY---HNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCc---CCCCCccCcccCCCHHHHHHHHH
Confidence 4899999999999999987653 33211 11111221122344444444431 12433334578999999999999
Q ss_pred HHHhhhh-CCccEEEecCC
Q 020492 137 LVKDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 137 ~~~~~~~-~Gvdg~~~D~~ 154 (325)
.++..++ .|||||-+|..
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9998886 79999999964
No 51
>PLN02361 alpha-amylase
Probab=96.43 E-value=0.067 Score=51.19 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCC--Cc----ee-eeecCCCCCC---hHHHHHHHHHCCCEEEeeeCC-cc-ccC
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMD--GF----RC-FTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GI-KHE 87 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~--~~----~~-f~~d~~~FPd---~~~~~~~L~~~G~k~~~~~~P-~i-~~~ 87 (325)
..|.+-++.+++.|| ++|||-+-... .. .+ +..| .+|.. ++.||+.+|++|+|+++-+.+ +. ...
T Consensus 29 ~~i~~kl~~l~~lG~--t~iwl~P~~~~~~~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~ 105 (401)
T PLN02361 29 RNLEGKVPDLAKSGF--TSAWLPPPSQSLAPEGYLPQNLYSLN-SAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTT 105 (401)
T ss_pred HHHHHHHHHHHHcCC--CEEEeCCCCcCCCCCCCCcccccccC-cccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCC
Confidence 677788888888886 88988765432 11 12 3444 46764 799999999999999986543 11 111
Q ss_pred ----CCcccccccccccee---ee-cCCCC--ceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCCC
Q 020492 88 ----DGYFVYDSGSKIDVW---IQ-KADGT--PFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 155 (325)
Q Consensus 88 ----~~~~~~~~~~~~~~~---~~-~~~g~--~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~e 155 (325)
..|..|+. ...++- +. +..|. .-.+..+++ ..-+|.+||++++...+.++.+.+ .|||||-+|...
T Consensus 106 ~~~~~~y~~~~g-~~~~wd~~~~~~~~~g~~~~~~~~~~~~-lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk 182 (401)
T PLN02361 106 QGHGGMYNRYDG-IPLPWDEHAVTSCTGGLGNRSTGDNFNG-VPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAK 182 (401)
T ss_pred CCCCCCcccCCC-CcCCCCccccccccCCCCCccCCCCCcc-CCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 11112211 000110 00 00010 000111111 223678899999999998887765 899999999753
No 52
>PLN02784 alpha-amylase
Probab=96.25 E-value=0.086 Score=54.50 Aligned_cols=133 Identities=19% Similarity=0.197 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCC----Cc--ee-eeecCCCCC---ChHHHHHHHHHCCCEEEeeeCC-ccccC-
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMD----GF--RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIKHE- 87 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~--~~-f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P-~i~~~- 87 (325)
..|.+-++.+++.|| ++|||-+-... +| .+ |+.| .+|- +++.||+.+|++|+++++-+.+ +....
T Consensus 521 ~~I~ekldyL~~LG~--taIWLpP~~~s~s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f 597 (894)
T PLN02784 521 MELGEKAAELSSLGF--TVVWLPPPTESVSPEGYMPKDLYNLN-SRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHF 597 (894)
T ss_pred HHHHHHHHHHHHhCC--CEEEeCCCCCCCCCCCcCcccccccC-cCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccc
Confidence 567788888888886 78988764421 12 12 4455 4666 4799999999999999986543 22110
Q ss_pred ----CCccccccccccceeeecCCCCceee--eecCCC----ccCCCCCChHHHHHHHHHHHhhh-hCCccEEEecCCC
Q 020492 88 ----DGYFVYDSGSKIDVWIQKADGTPFIG--EVWPGP----CVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 155 (325)
Q Consensus 88 ----~~~~~~~~~~~~~~~~~~~~g~~~~~--~~w~g~----~~~~Df~~p~a~~w~~~~~~~~~-~~Gvdg~~~D~~e 155 (325)
..+..|....+-+-.....+...|.+ ..+.|. ..-+|.+||++++-..+.++.+. +.|||||-+|+.-
T Consensus 598 ~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVK 676 (894)
T PLN02784 598 QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVR 676 (894)
T ss_pred cCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccC
Confidence 11111110000000000000001111 111111 22477889999998888888776 5899999999874
No 53
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=96.18 E-value=0.027 Score=57.73 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHCCCEEEeeeCC-ccccCCC---ccccccccccceeeecCCC-CceeeeecCCCccCCCCCChHHHHHHH
Q 020492 61 DPKSLAADLHLNGFKAIWMLDP-GIKHEDG---YFVYDSGSKIDVWIQKADG-TPFIGEVWPGPCVFPDYTQSKVRSWWG 135 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~P-~i~~~~~---~~~~~~~~~~~~~~~~~~g-~~~~~~~w~g~~~~~Df~~p~a~~w~~ 135 (325)
++++||+.+|++|++|++-+.. +...... ...++......++..+++. ..+. .+.|-..-+|+.+|+++++..
T Consensus 246 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~--~~~g~gn~ln~~~p~vr~~i~ 323 (688)
T TIGR02100 246 EFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYI--NDTGTGNTLNLSHPRVLQMVM 323 (688)
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceec--CCCCccccccCCCHHHHHHHH
Confidence 4799999999999999997654 3322110 0111111112333333331 1121 122333358999999999999
Q ss_pred HHHHhhh-hCCccEEEecCCC
Q 020492 136 SLVKDFI-YNGVDGIWNDMNE 155 (325)
Q Consensus 136 ~~~~~~~-~~Gvdg~~~D~~e 155 (325)
+.++.++ +.|||||-+|...
T Consensus 324 d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 324 DSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred HHHHHHHHHcCCcEEEEechh
Confidence 9999887 4899999999753
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.11 E-value=0.088 Score=54.47 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=73.3
Q ss_pred CHHHHHHH-HHHHHhcCCCceEEEEecccCC------Cc---eeeeecCCCCCC---hHHHHHHHHHCCCEEEeeeCC-c
Q 020492 18 SDKRVREI-CRTFREKGIPCDVIWMDIDYMD------GF---RCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-G 83 (325)
Q Consensus 18 ~~~~v~~~-~~~~~~~~iP~d~i~iD~~w~~------~~---~~f~~d~~~FPd---~~~~~~~L~~~G~k~~~~~~P-~ 83 (325)
+-..+.+- ++.++++|+ .+|+|-+=... ++ .-|.+++ +|-. ++.||+.+|++|++|++-+.| +
T Consensus 263 ~~~~i~~~l~~ylk~LGv--~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH 339 (726)
T PRK05402 263 SYRELADQLIPYVKEMGF--THVELLPIAEHPFDGSWGYQPTGYYAPTS-RFGTPDDFRYFVDACHQAGIGVILDWVPAH 339 (726)
T ss_pred CHHHHHHHHHHHHHHcCC--CEEEECCcccCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 43445444 577888886 66766532210 11 1233433 4543 689999999999999997665 3
Q ss_pred cccCCC-ccccccccccceeeecCC-CCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCC
Q 020492 84 IKHEDG-YFVYDSGSKIDVWIQKAD-GTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 84 i~~~~~-~~~~~~~~~~~~~~~~~~-g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~ 154 (325)
...+.. ...|+ + ..-+...++. +. ...|.+ ..+|+.||++++...+.++..++ .|||||-+|..
T Consensus 340 ~~~~~~~~~~~~-~-~~~y~~~~~~~~~---~~~w~~--~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v 406 (726)
T PRK05402 340 FPKDAHGLARFD-G-TALYEHADPREGE---HPDWGT--LIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAV 406 (726)
T ss_pred CCCCccchhccC-C-CcceeccCCcCCc---cCCCCC--ccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCH
Confidence 322211 00111 0 0011111110 10 012322 24799999999999999988875 79999999964
No 55
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.09 E-value=0.05 Score=55.86 Aligned_cols=128 Identities=15% Similarity=0.182 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCCceEEEEecccC----CCc-----eeeeecCCCCCC---hHHHHHHHHHCCCEEEeeeCC-ccccCC
Q 020492 22 VREICRTFREKGIPCDVIWMDIDYM----DGF-----RCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHED 88 (325)
Q Consensus 22 v~~~~~~~~~~~iP~d~i~iD~~w~----~~~-----~~f~~d~~~FPd---~~~~~~~L~~~G~k~~~~~~P-~i~~~~ 88 (325)
+.+.++.+++.|+ ++|++=+=+. ..+ .-|..+ .+|.. ++.||+.+|++|++|++-+.+ ++..+.
T Consensus 253 ~~~~L~ylk~LG~--t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~ 329 (758)
T PLN02447 253 ADDVLPRIKALGY--NAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNT 329 (758)
T ss_pred HHHHHHHHHHcCC--CEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccc
Confidence 3567888888886 5665532111 111 123443 36654 699999999999999997665 333221
Q ss_pred --CccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCCCCCc
Q 020492 89 --GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEPAV 158 (325)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~e~~~ 158 (325)
+...|+ +....+|-.++.|. ...|. ...+|+.+++++++..+.++..++ .+||||-+|.-....
T Consensus 330 ~~gl~~fD-g~~~~Yf~~~~~g~---~~~w~--~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~sml 396 (758)
T PLN02447 330 LDGLNGFD-GTDGSYFHSGPRGY---HWLWD--SRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSML 396 (758)
T ss_pred cccccccC-CCCccccccCCCCC---cCcCC--CceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhh
Confidence 111232 22234443332221 11232 335899999999999999998886 799999999865443
No 56
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=96.06 E-value=0.026 Score=61.39 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHCCCEEEeeeCC-ccccCCCcc---ccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHH
Q 020492 61 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYF---VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 136 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~P-~i~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~ 136 (325)
++++||+.+|++|++||+-+.+ +......+. .+.......|+..++ +.+..-..|.|....+|+.+|+++++..+
T Consensus 248 efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~-~~~~~y~~~~G~gn~~n~~~p~v~~~i~d 326 (1221)
T PRK14510 248 EFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEP-GNPKEYENWWGCGNLPNLERPFILRLPMD 326 (1221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecC-CCCCcccCCCCCCCccccCCHHHHHHHHH
Confidence 4799999999999999997654 332221110 011111122332221 11111123445555689999999999999
Q ss_pred HHHhhhhCCccEEEecCC
Q 020492 137 LVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 137 ~~~~~~~~Gvdg~~~D~~ 154 (325)
.++..++.|||||-+|..
T Consensus 327 ~lr~Wv~~gVDGfRfDla 344 (1221)
T PRK14510 327 VLRSWAKRGVDGFRLDLA 344 (1221)
T ss_pred HHHHHHHhCCCEEEEech
Confidence 999888899999999954
No 57
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.069 Score=52.39 Aligned_cols=133 Identities=23% Similarity=0.317 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEEecccCC---Cce----ee-eecCCCCC---ChHHHHHHHHHCCCEEEeeeCC-cc
Q 020492 17 DSDKRVREICRTFREKGIPCDVIWMDIDYMD---GFR----CF-TFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GI 84 (325)
Q Consensus 17 ~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~---~~~----~f-~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P-~i 84 (325)
.+-.-|.+-++.+++.|+ ++|||-+-... ..+ ++ ..|+ .|. |++++++.+|++|+|+++-+.. ..
T Consensus 26 Gdl~Gi~~~LdYl~~LGv--~aiwl~Pi~~s~~~~~gY~~~Dy~~id~-~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~ 102 (505)
T COG0366 26 GDLKGITEKLDYLKELGV--DAIWLSPIFESPQADHGYDVSDYTKVDP-HFGTEEDFKELVEEAHKRGIKVILDLVFNHT 102 (505)
T ss_pred ccHHhHHHhhhHHHHhCC--CEEEeCCCCCCCccCCCccccchhhcCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 355667788888888876 89998865543 122 22 2333 555 4689999999999999986542 11
Q ss_pred ccCCCccccccc---c---c-cceeee-c--------------CCCCc--------eeeeecCCCccCCCCCChHHHHHH
Q 020492 85 KHEDGYFVYDSG---S---K-IDVWIQ-K--------------ADGTP--------FIGEVWPGPCVFPDYTQSKVRSWW 134 (325)
Q Consensus 85 ~~~~~~~~~~~~---~---~-~~~~~~-~--------------~~g~~--------~~~~~w~g~~~~~Df~~p~a~~w~ 134 (325)
+.+.. -+.++ . . .++++- + ..|.. +..........-+++.||+++++.
T Consensus 103 s~~~~--~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~ 180 (505)
T COG0366 103 SDEHP--WFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREEL 180 (505)
T ss_pred CCccH--HHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHH
Confidence 11111 01100 0 0 123221 0 01111 111111111223789999999999
Q ss_pred HHHHHhhhhCCccEEEecCC
Q 020492 135 GSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 135 ~~~~~~~~~~Gvdg~~~D~~ 154 (325)
.+.++..++.|||||-+|.-
T Consensus 181 ~~~~~~W~~~gvDGfRlDa~ 200 (505)
T COG0366 181 LDVVKFWLDKGVDGFRLDAA 200 (505)
T ss_pred HHHHHHHHHcCCCeEEeccH
Confidence 88999888999999999975
No 58
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=95.73 E-value=0.047 Score=50.39 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred CceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCcccc-ccc---cccceeeecCCCCc
Q 020492 35 PCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVY-DSG---SKIDVWIQKADGTP 110 (325)
Q Consensus 35 P~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~-~~~---~~~~~~~~~~~g~~ 110 (325)
++|.+++|..--+. +...|. ++-++.||+.|.+++-+++- +.-+.+..| ++. ..+.++...
T Consensus 64 ~~d~vVID~~~~g~------~~~~fs--~~~i~~Lk~~g~~viaYlSv--Ge~E~~R~y~~~~~~~~~~~~l~~~----- 128 (315)
T TIGR01370 64 PFELVVIDYSKDGT------EDGTYS--PEEIVRAAAAGRWPIAYLSI--GAAEDYRFYWQKGWKVNAPAWLGNE----- 128 (315)
T ss_pred CCCEEEEccccccC------cccCCC--HHHHHHHHhCCcEEEEEEEc--hhccccchhhhhhhhcCCHHHhCCC-----
Confidence 57889999653211 111232 46788999999998877652 221111111 110 111222211
Q ss_pred eeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCC
Q 020492 111 FIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 155 (325)
Q Consensus 111 ~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e 155 (325)
...|+|. .++|+.+|+-++...+.++.+.+.|+||+-+|.-+
T Consensus 129 --n~~W~g~-~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lD 170 (315)
T TIGR01370 129 --DPDWPGN-YDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLID 170 (315)
T ss_pred --CCCCCCc-eeEecccHHHHHHHHHHHHHHHHcCCCeEeeccch
Confidence 1247765 57899999988888888888889999999999654
No 59
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=95.64 E-value=0.072 Score=52.97 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCc-eeeeec----CCCCCC----------hHHHHHHHHHCCCEEEeeeCC
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGF-RCFTFD----KERFPD----------PKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~-~~f~~d----~~~FPd----------~~~~~~~L~~~G~k~~~~~~P 82 (325)
+.++..+.++.+.+..|. ++.. .+|+-.+ ..+--+ ...|+| .++.|+.+|+.|++.+.+.--
T Consensus 116 ~~~~~~~~i~~L~~yHIN--~~QF-YDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmi 192 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHIN--GLQF-YDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMI 192 (559)
T ss_dssp GHHHHHHHHHHHHHTT----EEEE-TS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred CchhHHHHHHHHHhhCcC--eEEE-EeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhh
Confidence 568889999999998875 3332 2454211 001000 123433 489999999999999987543
Q ss_pred ccccCCCccccccccccceee-ecCCCCc---e-eeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCCCC
Q 020492 83 GIKHEDGYFVYDSGSKIDVWI-QKADGTP---F-IGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEP 156 (325)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~-~~~~g~~---~-~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~e~ 156 (325)
+-.. +++ ...++.+.+.+ +++.+.. + .+..|+..-.+.|..|++=++++.+++++.++ .|||||-+|.=-.
T Consensus 193 yaa~-~~~--~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~ 269 (559)
T PF13199_consen 193 YAAN-NNY--EEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGN 269 (559)
T ss_dssp SEEE-TT----S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--
T ss_pred hccc-cCc--ccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCC
Confidence 3222 211 12234444433 3333321 1 12335555678899999999999999887776 8999999995210
Q ss_pred CccCCCCCCCCCCCccCCCCCCCcccccc-cccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCC--------c--
Q 020492 157 AVFKSVTKTMPESNIHRGDDEIGGCQNHS-YYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQ--------R-- 225 (325)
Q Consensus 157 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~-~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~q--------r-- 225 (325)
. ...... +|. .. .+...|.-+. +++++..+++ ++++.--+.-|+. -
T Consensus 270 ~----------~~~~d~-----~G~--~i~~l~~~y~~Fi-----~~~K~~~~~k-~lv~N~V~~~g~~~~a~~~~~d~l 326 (559)
T PF13199_consen 270 R----------GTVYDY-----DGN--KIYDLSDGYASFI-----NAMKEALPDK-YLVFNAVSGYGIEQIAKTSKVDFL 326 (559)
T ss_dssp E----------EEEGGT-----T-----GGECHHHHHHHH-----HHHHHHSTTS-EEEEB-GGGTTHHHHTT-S--SSE
T ss_pred C----------CccccC-----CCC--CchhhHHHHHHHH-----HHHHHhCCCC-ceeeeccCccchhhhhccccccee
Confidence 0 000000 010 11 3344554432 2333443343 4666543332322 1
Q ss_pred ceeeecCCCCCCchHHHHHHHHHHHc
Q 020492 226 YAATWTGDNVSNWEHLHMSISMVLQL 251 (325)
Q Consensus 226 ~~~~w~GD~~s~W~~L~~~i~~~l~~ 251 (325)
|.=+| +...+...|+..|.+.=..
T Consensus 327 Y~EvW--~~~~~Y~~Lk~~i~~~r~~ 350 (559)
T PF13199_consen 327 YNEVW--DDYDTYGDLKRIIDQNRKY 350 (559)
T ss_dssp EEE----SBS-BHHHHHHHHHHHHHH
T ss_pred eeecc--cccccHHHHHHHHHHHhhh
Confidence 23378 6677788898888776555
No 60
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=95.54 E-value=0.06 Score=57.62 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHCCCEEEeeeCC-ccccCCCccccccccccceee-ecCCCCceeeeecCCCccCCCCCChHHHHHHHHHH
Q 020492 61 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGSKIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 138 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~P-~i~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~ 138 (325)
++++||+.||++|++|++-+-+ +..... .|+. ...+|+. .+.+|.+.. .++|. -++..+|.++++..+.+
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~---~f~~-~~p~Yy~~~~~~G~~~~--~~~g~--~l~~e~~~vrk~iiDsl 627 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVY---IFED-LEPNYYHFMDADGTPRT--SFGGG--RLGTTHEMSRRILVDSI 627 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccc---cccc-cCCCceEeeCCCCCccc--ccCCC--CCCcCCHHHHHHHHHHH
Confidence 4799999999999999987654 332222 3432 2344543 344555432 23332 37888999999999999
Q ss_pred Hhhhh-CCccEEEecCC
Q 020492 139 KDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 139 ~~~~~-~Gvdg~~~D~~ 154 (325)
+.+++ .|||||-+|..
T Consensus 628 ~yWv~ey~VDGFRfDl~ 644 (1111)
T TIGR02102 628 KYLVDEFKVDGFRFDMM 644 (1111)
T ss_pred HHHHHhcCCcEEEEecc
Confidence 88875 89999999964
No 61
>PLN02960 alpha-amylase
Probab=95.50 E-value=0.17 Score=52.56 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=77.9
Q ss_pred CHHHHH-HHHHHHHhcCCCceEEEEecccC----C--Cc---eeeeecCCCCCC---hHHHHHHHHHCCCEEEeeeCC-c
Q 020492 18 SDKRVR-EICRTFREKGIPCDVIWMDIDYM----D--GF---RCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-G 83 (325)
Q Consensus 18 ~~~~v~-~~~~~~~~~~iP~d~i~iD~~w~----~--~~---~~f~~d~~~FPd---~~~~~~~L~~~G~k~~~~~~P-~ 83 (325)
|-..+. +.++-++++|+ .+|++=+=.. . ++ .-|..+ .+|-. ++.||+.+|++|++|++-+.| +
T Consensus 414 tf~~~~e~~LdYLk~LGv--t~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH 490 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGY--NAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFGTPDDFKRLVDEAHGLGLLVFLDIVHSY 490 (897)
T ss_pred CHHHHHHHHHHHHHHcCC--CEEEECCcccCCCCCCCCCCcccCCCcc-cccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 444554 56888888886 5565532110 0 11 123333 24443 689999999999999997665 4
Q ss_pred cccCCC--ccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCCCCC
Q 020492 84 IKHEDG--YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEPA 157 (325)
Q Consensus 84 i~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~e~~ 157 (325)
+..+.. ...|+ +....++-.+..| ....| |. ..+|+.+|+++++..+.++..++ .+||||-+|.-...
T Consensus 491 ~~~d~~~~L~~FD-G~~~~Yf~~~~~g---~~~~W-G~-~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sM 561 (897)
T PLN02960 491 AAADEMVGLSLFD-GSNDCYFHSGKRG---HHKRW-GT-RMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSM 561 (897)
T ss_pred cCCccccchhhcC-CCccceeecCCCC---ccCCC-CC-cccCCCCHHHHHHHHHHHHHHHHHHCCCceeeccccee
Confidence 433321 11232 1111223222112 12235 22 45799999999999999988774 79999999976543
No 62
>PRK14705 glycogen branching enzyme; Provisional
Probab=95.45 E-value=0.1 Score=56.44 Aligned_cols=125 Identities=16% Similarity=0.171 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCCceEEEEec--------ccC-CCceeeeecCCCCCC---hHHHHHHHHHCCCEEEeeeCC-ccccCC
Q 020492 22 VREICRTFREKGIPCDVIWMDI--------DYM-DGFRCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHED 88 (325)
Q Consensus 22 v~~~~~~~~~~~iP~d~i~iD~--------~w~-~~~~~f~~d~~~FPd---~~~~~~~L~~~G~k~~~~~~P-~i~~~~ 88 (325)
+.++++-+++.|+ .+|++=+ .|- ...+.|..+ .+|-. ++.||+.+|++|++||+-+.| +...+.
T Consensus 768 ~~~lldYlk~LGv--t~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~ 844 (1224)
T PRK14705 768 AKELVDYVKWLGF--THVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS 844 (1224)
T ss_pred HHHHHHHHHHhCC--CEEEECccccCCCCCCCCCCccccCCcC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcch
Confidence 3455788888886 5565432 120 011223333 35654 689999999999999997665 333221
Q ss_pred C-ccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCCC
Q 020492 89 G-YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 155 (325)
Q Consensus 89 ~-~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~e 155 (325)
. ...|+ ...+....+...-....|.. ..+|+.+++++++..+.++..++ .+||||-+|.-.
T Consensus 845 ~~l~~fd----g~~~y~~~d~~~g~~~~Wg~--~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~ 907 (1224)
T PRK14705 845 WALAQFD----GQPLYEHADPALGEHPDWGT--LIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVA 907 (1224)
T ss_pred hhhhhcC----CCcccccCCcccCCCCCCCC--ceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehh
Confidence 0 00111 11111111111001123432 34799999999999999888775 799999999854
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=95.36 E-value=0.19 Score=51.57 Aligned_cols=123 Identities=14% Similarity=0.194 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCCceEEEEecc--------cC-CCceeeeecCCCCCC---hHHHHHHHHHCCCEEEeeeCC-ccccCC-
Q 020492 23 REICRTFREKGIPCDVIWMDID--------YM-DGFRCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHED- 88 (325)
Q Consensus 23 ~~~~~~~~~~~iP~d~i~iD~~--------w~-~~~~~f~~d~~~FPd---~~~~~~~L~~~G~k~~~~~~P-~i~~~~- 88 (325)
.++++.++++|+ ..|++-+= |- ...+.|..+ .+|.. ++.||+.+|++|++|++-+.| ++..+.
T Consensus 273 ~~ll~ylk~LGv--t~I~LmPi~e~~~~~~wGY~~~~~~a~~-~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~ 349 (730)
T PRK12568 273 EQLIPYVQQLGF--THIELLPITEHPFGGSWGYQPLGLYAPT-ARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAH 349 (730)
T ss_pred HHHHHHHHHcCC--CEEEECccccCCCCCCCCCCCCcCCccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcccc
Confidence 345677888886 55654321 20 011234444 36664 689999999999999997665 333321
Q ss_pred CccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCC
Q 020492 89 GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~ 154 (325)
+...|+. ..++ ..++...-....|. ...+|+.+|+++++..+.++..++ .|||||-+|.-
T Consensus 350 ~l~~fdg---~~~Y-e~~d~~~g~~~~W~--~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAv 410 (730)
T PRK12568 350 GLAQFDG---AALY-EHADPREGMHRDWN--TLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAV 410 (730)
T ss_pred ccccCCC---cccc-ccCCCcCCccCCCC--CeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCH
Confidence 1111210 0111 11111000112332 224799999999999998888775 79999999964
No 64
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=95.36 E-value=0.082 Score=53.83 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHCCCEEEeeeC-Ccccc--C-CCccccccccccce-eeecCCCCceeeeecCCCccCCCCCChHHHHHHH
Q 020492 61 DPKSLAADLHLNGFKAIWMLD-PGIKH--E-DGYFVYDSGSKIDV-WIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWG 135 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~-P~i~~--~-~~~~~~~~~~~~~~-~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~ 135 (325)
.+|.||+.||+.|+.||+-|- .+... . .+-..|+ +.++.+ +..+++|.. . .+.|.+.-+..++|-+++|.-
T Consensus 266 EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~-~id~~~Yyr~~~dg~~-~--N~TGcGNtln~~hpmvrk~iv 341 (697)
T COG1523 266 EFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFR-GIDPNYYYRLDPDGYY-S--NGTGCGNTLNTEHPMVRKLIV 341 (697)
T ss_pred HHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccc-cCCcCceEEECCCCCe-e--cCCccCcccccCChHHHHHHH
Confidence 468999999999999998653 33311 0 1111232 455554 445666533 2 233444458889999999999
Q ss_pred HHHHhhhh-CCccEEEecCC
Q 020492 136 SLVKDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 136 ~~~~~~~~-~Gvdg~~~D~~ 154 (325)
+-|+.+++ .+||||-+|..
T Consensus 342 DsLrYWv~e~hVDGFRFDLa 361 (697)
T COG1523 342 DSLRYWVEEYHVDGFRFDLA 361 (697)
T ss_pred HHHHHHHHHhCCCceeecch
Confidence 99998885 89999999986
No 65
>PRK09505 malS alpha-amylase; Reviewed
Probab=95.22 E-value=0.27 Score=50.30 Aligned_cols=63 Identities=14% Similarity=0.343 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCC-----------------Cceeeeec----CCCCC---ChHHHHHHHHHCC
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMD-----------------GFRCFTFD----KERFP---DPKSLAADLHLNG 73 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~-----------------~~~~f~~d----~~~FP---d~~~~~~~L~~~G 73 (325)
+-..|.+-++.+++.|| ++|||-+-+.. ..+.+..| ..+|- +++.||+.+|++|
T Consensus 228 dl~Gi~~kLdyl~~LGv--~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~G 305 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGV--NALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRG 305 (683)
T ss_pred CHHHHHHhhHHHHHcCC--CEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCC
Confidence 45667788888888776 78887653321 11222222 13454 4799999999999
Q ss_pred CEEEeeeCC
Q 020492 74 FKAIWMLDP 82 (325)
Q Consensus 74 ~k~~~~~~P 82 (325)
+|+++-+.+
T Consensus 306 i~VilD~V~ 314 (683)
T PRK09505 306 IRILFDVVM 314 (683)
T ss_pred CEEEEEECc
Confidence 999987654
No 66
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=95.20 E-value=0.1 Score=47.13 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCce--eeeecCCCC--CChHHHHHHHHHCCCEEEeeeC
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGFR--CFTFDKERF--PDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~--~f~~d~~~F--Pd~~~~~~~L~~~G~k~~~~~~ 81 (325)
|.+..++.|+-..++|+ +.+.+|.+|..... .+++- +.. .+++++++.-+++|+.+.+|.+
T Consensus 30 ~t~~~k~yIDfAa~~G~--eYvlvD~GW~~~~~~~~~d~~-~~~~~~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGI--EYVLVDAGWYGWEKDDDFDFT-KPIPDFDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp SHHHHHHHHHHHHHTT---SEEEEBTTCCGS--TTT--TT--B-TT--HHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHHHcCC--CEEEecccccccccccccccc-ccCCccCHHHHHHHHHHcCCCEEEEEe
Confidence 67888999999999998 56888999964111 11111 122 4679999999999999999965
No 67
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.11 E-value=0.22 Score=50.68 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCCceEEEEec--------ccCCC-ceeeeecCCCCCC---hHHHHHHHHHCCCEEEeeeCC-ccccCCC
Q 020492 23 REICRTFREKGIPCDVIWMDI--------DYMDG-FRCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDG 89 (325)
Q Consensus 23 ~~~~~~~~~~~iP~d~i~iD~--------~w~~~-~~~f~~d~~~FPd---~~~~~~~L~~~G~k~~~~~~P-~i~~~~~ 89 (325)
.++++-++++|+. +|.+=+ .|-=+ ..-|..+ .+|-. ++.||+.+|++|++|++-+.| ++..+..
T Consensus 171 ~~l~~ylk~lG~t--~velmPv~e~~~~~~wGY~~~~~~~~~-~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~ 247 (639)
T PRK14706 171 HRLGEYVTYMGYT--HVELLGVMEHPFDGSWGYQVTGYYAPT-SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDES 247 (639)
T ss_pred HHHHHHHHHcCCC--EEEccchhcCCCCCCCCcCcccccccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchh
Confidence 3445777888863 343211 12000 1123443 35643 689999999999999997655 3332211
Q ss_pred c-cccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhh-hCCccEEEecCCC
Q 020492 90 Y-FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 155 (325)
Q Consensus 90 ~-~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~-~~Gvdg~~~D~~e 155 (325)
. ..++ + ..-+...++... ....|. ...+|+.+|+++++..+.++..+ +.+||||-+|...
T Consensus 248 ~l~~~d-g-~~~y~~~~~~~g--~~~~w~--~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~ 309 (639)
T PRK14706 248 GLAHFD-G-GPLYEYADPRKG--YHYDWN--TYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVA 309 (639)
T ss_pred hhhccC-C-CcceeccCCcCC--cCCCCC--CcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeeh
Confidence 0 0111 0 000111111100 011232 23479999999999999998877 4899999999754
No 68
>PLN03244 alpha-amylase; Provisional
Probab=95.08 E-value=0.068 Score=54.64 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHCCCEEEeeeCC-ccccCC--CccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHH
Q 020492 61 DPKSLAADLHLNGFKAIWMLDP-GIKHED--GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSL 137 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~P-~i~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~ 137 (325)
+++.||+.+|++|++|++-+.+ +...+. +...|+ +....|+-.++.|. ...| |. ...|+.+++++++..+.
T Consensus 442 DLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fD-Gt~~~Yf~~~~~g~---~~~W-Gs-~~fnyg~~EVr~FLLsn 515 (872)
T PLN03244 442 DFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFD-GSNDCYFHTGKRGH---HKHW-GT-RMFKYGDLDVLHFLISN 515 (872)
T ss_pred HHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcC-CCccceeccCCCCc---cCCC-CC-ceecCCCHHHHHHHHHH
Confidence 3689999999999999997655 333322 111222 11212333222221 1245 33 45799999999999999
Q ss_pred HHhhh-hCCccEEEecCCCCC
Q 020492 138 VKDFI-YNGVDGIWNDMNEPA 157 (325)
Q Consensus 138 ~~~~~-~~Gvdg~~~D~~e~~ 157 (325)
++..+ +.+||||-+|.-.-.
T Consensus 516 a~yWleEyhIDGFRfDaVtSM 536 (872)
T PLN03244 516 LNWWITEYQIDGFQFHSLASM 536 (872)
T ss_pred HHHHHHHhCcCcceeecchhh
Confidence 98877 489999999976433
No 69
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.04 E-value=0.27 Score=49.13 Aligned_cols=121 Identities=16% Similarity=0.155 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccC----CCce-----eeeecCCCCCC---hHHHHHHHHHCCCEEEeeeCC-cc
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYM----DGFR-----CFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GI 84 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~----~~~~-----~f~~d~~~FPd---~~~~~~~L~~~G~k~~~~~~P-~i 84 (325)
+-..|.+-++.+++.|| .+|++-+=.. .+++ .|..+ .+|-. +++||+.+|++|+++++-+.+ ++
T Consensus 109 ~~~gi~~~l~yl~~LGv--~~i~L~Pi~~~~~~~~~GY~~~~~~~~~-~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~ 185 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGI--TAIELMPVAQFPGTRGWGYDGVLPYAPH-NAYGGPDDLKALVDAAHGLGLGVILDVVYNHF 185 (542)
T ss_pred CHHHHHHhhHHHHHcCC--CEEEeCccccCCCCCCCCCCccCccccc-cccCCHHHHHHHHHHHHHCCCEEEEEEccCCC
Confidence 44667777888888876 6676543211 0111 13333 34543 699999999999999997654 44
Q ss_pred ccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCCh---HHHHHHHHHHHhhhh-CCccEEEecCC
Q 020492 85 KHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQS---KVRSWWGSLVKDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p---~a~~w~~~~~~~~~~-~Gvdg~~~D~~ 154 (325)
..+..+. . .... +|-.+ . ...| |. -+|+.+| ++++++.+.++..++ .|||||-+|..
T Consensus 186 ~~~~~~~--~-~~~~-y~~~~-~-----~~~w-g~--~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~ 246 (542)
T TIGR02402 186 GPEGNYL--P-RYAP-YFTDR-Y-----STPW-GA--AINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAV 246 (542)
T ss_pred CCccccc--c-ccCc-cccCC-C-----CCCC-CC--ccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCH
Confidence 3333211 0 0111 33211 1 1123 22 3799999 999999998888775 79999999965
No 70
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=94.27 E-value=0.37 Score=48.16 Aligned_cols=136 Identities=22% Similarity=0.264 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCC-------ceeeeecCCCCC---ChHHHHHHHHHCCCEEEeeeCCccccC
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDG-------FRCFTFDKERFP---DPKSLAADLHLNGFKAIWMLDPGIKHE 87 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~-------~~~f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P~i~~~ 87 (325)
+..-|.+-++.+++.| ++++|+-+-.... ..++..=..+|. |++++++.+|+.|+++++-+-|.-..+
T Consensus 38 ~~~GI~~kldyi~~lG--~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~ 115 (545)
T KOG0471|consen 38 DLKGITSKLDYIKELG--FTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRSD 115 (545)
T ss_pred ccccchhhhhHHHhcC--CceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCCc
Confidence 3445566666665555 5889887655332 223333235676 478999999999999998765533221
Q ss_pred C-Ccc---ccccccccceeeecCCC-----C---------ceeeeecC----------C----CccCCCCCChHHHHHHH
Q 020492 88 D-GYF---VYDSGSKIDVWIQKADG-----T---------PFIGEVWP----------G----PCVFPDYTQSKVRSWWG 135 (325)
Q Consensus 88 ~-~~~---~~~~~~~~~~~~~~~~g-----~---------~~~~~~w~----------g----~~~~~Df~~p~a~~w~~ 135 (325)
+ ..+ ...+..-.+++.-++.+ + .+.+..|+ + ...-+|+.||++++-+.
T Consensus 116 ~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~ 195 (545)
T KOG0471|consen 116 EVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIK 195 (545)
T ss_pred cccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHH
Confidence 0 000 01111111222222111 0 01112222 1 13347899999999999
Q ss_pred HHHH-hhhhCCccEEEecCCC
Q 020492 136 SLVK-DFIYNGVDGIWNDMNE 155 (325)
Q Consensus 136 ~~~~-~~~~~Gvdg~~~D~~e 155 (325)
+.++ ...+.||||+-+|...
T Consensus 196 ~~l~~~~~~~gvdGfRiD~v~ 216 (545)
T KOG0471|consen 196 EWLRDFWLEKGVDGFRIDAVK 216 (545)
T ss_pred HHHHHHHhhcCCCeEEEEccc
Confidence 9999 5667999999999874
No 71
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=94.24 E-value=0.18 Score=52.89 Aligned_cols=89 Identities=11% Similarity=0.024 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHCCCEEEeeeCC-ccccCCC--ccccccccccceeeec-CCCCceeeeecCCCccCCCCCChHHHHHHHH
Q 020492 61 DPKSLAADLHLNGFKAIWMLDP-GIKHEDG--YFVYDSGSKIDVWIQK-ADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 136 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~P-~i~~~~~--~~~~~~~~~~~~~~~~-~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~ 136 (325)
++++||+.||++|++|++-+-. +...... ...++. ..++||.+. .+|......++ .-.+..||.++++..+
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~-~~P~YY~r~~~~G~~~n~~~~----~d~a~e~~~Vrk~iiD 479 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDK-IVPGYYHRLNEDGGVENSTCC----SNTATEHRMMAKLIVD 479 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeecccccccCccCcccccc-cCcHhhEeeCCCCCeecCCCC----cCCCCCCHHHHHHHHH
Confidence 4789999999999999986543 3322110 012221 234555543 23432111111 1246789999999999
Q ss_pred HHHhhh-hCCccEEEecCC
Q 020492 137 LVKDFI-YNGVDGIWNDMN 154 (325)
Q Consensus 137 ~~~~~~-~~Gvdg~~~D~~ 154 (325)
.++.++ +.|||||-+|.-
T Consensus 480 sl~~W~~ey~VDGFRfDlm 498 (898)
T TIGR02103 480 SLVVWAKDYKVDGFRFDLM 498 (898)
T ss_pred HHHHHHHHcCCCEEEEech
Confidence 998877 589999999964
No 72
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=94.22 E-value=0.48 Score=48.41 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMD 47 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~ 47 (325)
+.+-|.+=++.+.+.|+|...++||++||.
T Consensus 237 ~p~GV~~Gv~~l~~gG~pprfvIIDDGWQs 266 (865)
T PLN02982 237 DPVGVWHGVKEFAEGGVPPRFLIIDDGWQS 266 (865)
T ss_pred CHHHHHHHHHHHhcCCCCccEEEEecchhh
Confidence 578999999999999999999999999984
No 73
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=94.05 E-value=0.34 Score=48.72 Aligned_cols=130 Identities=19% Similarity=0.249 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHhcCCC------ceEEEEecccC-CCceeeeecCCCCCC---hHHHHHHHHHCCCEEEeeeCC-cccc
Q 020492 18 SDKRVREICRTFREKGIP------CDVIWMDIDYM-DGFRCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKH 86 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP------~d~i~iD~~w~-~~~~~f~~d~~~FPd---~~~~~~~L~~~G~k~~~~~~P-~i~~ 86 (325)
+-+-+.+.+..+++.||- +--+=.|-+|- ...+-|.. ..+|-. +|.+|+.+|++|+-|++-+-| .+..
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp-~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~ 241 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAP-TSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPP 241 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccc-cccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCC
Confidence 457778899999999973 22222233331 12233444 457765 589999999999999996555 4554
Q ss_pred CCCcc-ccccccccceeeecCCCCceee--eecCCCccCCCCCChHHHHHHHHHHHhhh-hCCccEEEecCCCC
Q 020492 87 EDGYF-VYDSGSKIDVWIQKADGTPFIG--EVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEP 156 (325)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~--~~w~g~~~~~Df~~p~a~~w~~~~~~~~~-~~Gvdg~~~D~~e~ 156 (325)
+..+. .|+ ...+....+ |..+ ..| ....-|+..+|+|.++.+.....+ +..|||+-+|.-.-
T Consensus 242 d~~~L~~fd----g~~~~e~~~--~~~~~~~~W--g~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~s 307 (628)
T COG0296 242 DGNYLARFD----GTFLYEHED--PRRGEHTDW--GTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVAS 307 (628)
T ss_pred CcchhhhcC----CccccccCC--cccccCCCc--ccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhh
Confidence 43211 111 111111111 1111 122 122334449999999877766555 48999999998643
No 74
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=93.72 E-value=0.31 Score=43.62 Aligned_cols=108 Identities=23% Similarity=0.327 Sum_probs=67.6
Q ss_pred cCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCcccc----ccccccceeeecCC
Q 020492 32 KGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVY----DSGSKIDVWIQKAD 107 (325)
Q Consensus 32 ~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~----~~~~~~~~~~~~~~ 107 (325)
+.-|++.+++|++|.+..+ =|-.++=++.+++.|.+++-+++ |...++|..| -....++++.. .|
T Consensus 40 ~~~~f~llVVDps~~g~~~--------~~~~~eelr~~~~gg~~pIAYls--Ig~ae~yR~Ywd~~w~~~~p~wLg~-ed 108 (300)
T COG2342 40 LNSPFDLLVVDPSYCGPFN--------TPWTIEELRTKADGGVKPIAYLS--IGEAESYRFYWDKYWLTGRPDWLGE-ED 108 (300)
T ss_pred hcCCCcEEEEeccccCCCC--------CcCcHHHHHHHhcCCeeEEEEEe--chhhhhhhhHhhhhhhcCCcccccC-CC
Confidence 3457899999988754311 12345667777888877776665 3333333322 11223333321 11
Q ss_pred CCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCCCC
Q 020492 108 GTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPA 157 (325)
Q Consensus 108 g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~~ 157 (325)
.-|+|+-. +-|=.|+=++-+.+.++++.+.|+||+-+|.-++.
T Consensus 109 ------P~W~Gny~-VkYW~~eWkdii~~~l~rL~d~GfdGvyLD~VD~y 151 (300)
T COG2342 109 ------PEWPGNYA-VKYWEPEWKDIIRSYLDRLIDQGFDGVYLDVVDAY 151 (300)
T ss_pred ------CCCCCCce-eeccCHHHHHHHHHHHHHHHHccCceEEEeeechH
Confidence 23777743 45667887777888899999999999999987654
No 75
>PLN02877 alpha-amylase/limit dextrinase
Probab=91.84 E-value=0.8 Score=48.42 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=55.5
Q ss_pred hHHHHHHHHHCCCEEEeeeCC-ccccCCC---ccccccccccceeee-cCCCCceeeeecCCCccCCCCCChHHHHHHHH
Q 020492 62 PKSLAADLHLNGFKAIWMLDP-GIKHEDG---YFVYDSGSKIDVWIQ-KADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 136 (325)
Q Consensus 62 ~~~~~~~L~~~G~k~~~~~~P-~i~~~~~---~~~~~~~~~~~~~~~-~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~ 136 (325)
+++||+.||++|++|++-+-. +...... ...++ ....+||.+ +++|..-...+ +.-..-.++.++++..+
T Consensus 468 fk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld-~~vP~YY~r~~~~G~~~ns~c----~n~~Ase~~mvrklIlD 542 (970)
T PLN02877 468 FRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLD-KIVPGYYLRRNSDGFIENSTC----VNNTASEHYMVDRLIVD 542 (970)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccCCCCcchhhccc-CCCCCceEEECCCCCcccCCc----cCCCccCCHHHHHHHHH
Confidence 799999999999999987653 3321110 01222 234466655 44553211111 11124467889999888
Q ss_pred HHHhhh-hCCccEEEecCC
Q 020492 137 LVKDFI-YNGVDGIWNDMN 154 (325)
Q Consensus 137 ~~~~~~-~~Gvdg~~~D~~ 154 (325)
-++..+ +.|||||-+|..
T Consensus 543 sl~yW~~ey~VDGFRFDlm 561 (970)
T PLN02877 543 DLLNWAVNYKVDGFRFDLM 561 (970)
T ss_pred HHHHHHHHhCCCEEEEEcc
Confidence 888777 589999999976
No 76
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=90.48 E-value=0.76 Score=46.52 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHCCCEEEeee-CCccccC--CCccccccccc-cceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHH
Q 020492 61 DPKSLAADLHLNGFKAIWML-DPGIKHE--DGYFVYDSGSK-IDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 136 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~-~P~i~~~--~~~~~~~~~~~-~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~ 136 (325)
++|.||+++|..|+-|++-| .-+...+ .+...|+ +.+ ..||-..+.| .-+.+.+...+..+|++.+...+
T Consensus 312 efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fd-Gid~~~Yf~~~~r~-----~h~~~~~r~fn~~~~~V~rflL~ 385 (757)
T KOG0470|consen 312 EFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFD-GIDNSVYFHSGPRG-----YHNSWCSRLFNYNHPVVLRFLLS 385 (757)
T ss_pred HHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhcc-CcCCceEEEeCCcc-----cccccccccccCCCHHHHHHHHH
Confidence 58999999999999988754 3333332 2333444 444 4455554422 22333455689999999999888
Q ss_pred HHHhhh-hCCccEEEecCCC
Q 020492 137 LVKDFI-YNGVDGIWNDMNE 155 (325)
Q Consensus 137 ~~~~~~-~~Gvdg~~~D~~e 155 (325)
-++..+ +..||||-+|..-
T Consensus 386 nLr~WVtEY~vDGFRFD~~s 405 (757)
T KOG0470|consen 386 NLRWWVTEYHVDGFRFDLVS 405 (757)
T ss_pred HHHHHHHheeccceEEcchh
Confidence 888776 4899999999764
No 77
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=90.09 E-value=1.3 Score=42.09 Aligned_cols=123 Identities=17% Similarity=0.169 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEE-eccc---CCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCccccc
Q 020492 19 DKRVREICRTFREKGIPCDVIWM-DIDY---MDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 94 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~i-D~~w---~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~ 94 (325)
.+++++.++.|++.|+.+ |-| ...| ....+.|+ |.-+..+++.+++.|+|+++.+...-.+ .-+.+
T Consensus 9 ~e~~~~d~~~m~~~G~n~--vri~~~~W~~lEP~eG~yd-----F~~lD~~l~~a~~~Gi~viL~~~~~~~P---~Wl~~ 78 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNT--VRIGEFSWSWLEPEEGQYD-----FSWLDRVLDLAAKHGIKVILGTPTAAPP---AWLYD 78 (374)
T ss_dssp CCHHHHHHHHHHHHT-SE--EEE-CCEHHHH-SBTTB--------HHHHHHHHHHHCTT-EEEEEECTTTS----HHHHC
T ss_pred HHHHHHHHHHHHHcCCCE--EEEEEechhhccCCCCeee-----cHHHHHHHHHHHhccCeEEEEecccccc---cchhh
Confidence 478899999999999854 443 3344 22233333 3348899999999999999866421111 11111
Q ss_pred cccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh----C-CccEEEecCCCCCc
Q 020492 95 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY----N-GVDGIWNDMNEPAV 158 (325)
Q Consensus 95 ~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~----~-Gvdg~~~D~~e~~~ 158 (325)
...+....+.+|.... .|.....++.+|..++.....++++.+ . .|-+|-+| ||+..
T Consensus 79 --~~Pe~~~~~~~g~~~~----~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~-NE~~~ 140 (374)
T PF02449_consen 79 --KYPEILPVDADGRRRG----FGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID-NEPGY 140 (374)
T ss_dssp --CSGCCC-B-TTTSBEE----CCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC-CSTTC
T ss_pred --hcccccccCCCCCcCc----cCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec-cccCc
Confidence 2334445555664321 233344678889988887777766552 2 36788887 67654
No 78
>smart00642 Aamy Alpha-amylase domain.
Probab=87.56 E-value=2.4 Score=35.43 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEEecccCCCc----------eee-eecCCCCC---ChHHHHHHHHHCCCEEEeeeCC
Q 020492 17 DSDKRVREICRTFREKGIPCDVIWMDIDYMDGF----------RCF-TFDKERFP---DPKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 17 ~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~----------~~f-~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P 82 (325)
.+-+.+.+.++.+++.|+ ++|++-+-+.... .+| ..++ +|- ++++|++.+|++|+++++-+.|
T Consensus 16 G~~~gi~~~l~yl~~lG~--~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGV--TAIWLSPIFESPQGYPSYHGYDISDYKQIDP-RFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred cCHHHHHHHHHHHHHCCC--CEEEECcceeCCCCCCCCCCcCccccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 356777777887888775 8888865432221 121 2222 443 3689999999999999987665
No 79
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=87.35 E-value=4.2 Score=41.15 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=27.5
Q ss_pred CCCCChH--HHHHHH-HHHHhhhhCCccEEEecCC
Q 020492 123 PDYTQSK--VRSWWG-SLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 123 ~Df~~p~--a~~w~~-~~~~~~~~~Gvdg~~~D~~ 154 (325)
++|.||. +++-.. +.++.+.+.|++|+-+|.+
T Consensus 262 LNw~dPs~av~~~~~gdal~~w~~lG~~GfRLDAv 296 (688)
T TIGR02455 262 LNWLDPTFAAQQLIIGDALHAIDCLGARGLRLDAN 296 (688)
T ss_pred cCccCccHHHHHHHHHHHHHHHHHhccccceeccc
Confidence 6789999 887766 6788888999999999975
No 80
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=87.31 E-value=7.7 Score=39.76 Aligned_cols=121 Identities=13% Similarity=0.076 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCC---------hHHHHHH-HHHCCCEEEeeeCCc-cccC
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD---------PKSLAAD-LHLNGFKAIWMLDPG-IKHE 87 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd---------~~~~~~~-L~~~G~k~~~~~~P~-i~~~ 87 (325)
.+++.++++++++.|+. +|.+-.. .+..++=.++...||+ +..+.=. -|+.|+|+--|+.|. +...
T Consensus 333 ~~~L~~lLdrlk~~G~n--tV~lqaf-adp~gd~~~~s~yfP~~~lp~r~d~f~~~aw~l~~r~~v~v~AWmp~~~~~~~ 409 (671)
T PRK14582 333 DRNIDVLIQRVKDMQIS--TVYLQAF-ADPDGDGLVKELYFPNRLLPMRADLFNRVAWQLRTRAGVNVYAWMPVLSFDLD 409 (671)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEEec-cCCCCCccccccccCccccccccCCcCHHHHHHHHhhCCEEEEeccceeeccC
Confidence 46777888888888874 3433311 1122333455566664 1121112 456699999999886 3332
Q ss_pred CCccccccccccceeeecCCCCce-eeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEecC
Q 020492 88 DGYFVYDSGSKIDVWIQKADGTPF-IGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDM 153 (325)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~ 153 (325)
.+...- .+. +.++.+. +...|.+. +|.+.|++++|..+..+.+.. ..|||+-+|-
T Consensus 410 ~~~~~~---~~~-----~~~~~~~~~~~~~~~r---l~P~~pe~r~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 410 PTLPRV---KRL-----DTGEGKAQIHPEQYRR---LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred CCcchh---hhc-----cccCCccccCCCCCcC---CCCCCHHHHHHHHHHHHHHHHhCCCceEEecc
Confidence 221111 110 1112111 11122122 899999999999999999887 5899998874
No 81
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=83.95 E-value=4.3 Score=37.68 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=45.6
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCC-CceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccC
Q 020492 9 YHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMD-GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHE 87 (325)
Q Consensus 9 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~-~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~ 87 (325)
+|.+|. ..+..++.++++++.|+..=.+.+-+.+.. ..+.|+|.. .-|+..+++..++.|++|++..-|+|..+
T Consensus 16 ~hy~r~---p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g--~~dl~~f~~~a~~~gl~vilrpGpyi~aE 90 (319)
T PF01301_consen 16 FHYFRI---PPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTG--NRDLDRFLDLAQENGLYVILRPGPYICAE 90 (319)
T ss_dssp E-GGGS----GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SG--GG-HHHHHHHHHHTT-EEEEEEES---TT
T ss_pred eccccC---ChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccc--hhhHHHHHHHHHHcCcEEEecccceeccc
Confidence 344443 267789999999999987655554444332 234455532 35889999999999999999999999876
Q ss_pred C
Q 020492 88 D 88 (325)
Q Consensus 88 ~ 88 (325)
-
T Consensus 91 ~ 91 (319)
T PF01301_consen 91 W 91 (319)
T ss_dssp B
T ss_pred c
Confidence 4
No 82
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=82.08 E-value=16 Score=34.28 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEe--cc---cCCCceeeeecCCCCC-C-hHHHHHHHHHCCCEEEeeeCCccccCCCcc
Q 020492 19 DKRVREICRTFREKGIPCDVIWMD--ID---YMDGFRCFTFDKERFP-D-PKSLAADLHLNGFKAIWMLDPGIKHEDGYF 91 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD--~~---w~~~~~~f~~d~~~FP-d-~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~ 91 (325)
.-+..+.++.+++.|...-++..- ++ |-+...+|+.-...+. | .+++++.+++.|+|++++.+|. .-...
T Consensus 90 ~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~-dw~~~-- 166 (346)
T PF01120_consen 90 KFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW-DWHHP-- 166 (346)
T ss_dssp T--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS-SCCCT--
T ss_pred cCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch-HhcCc--
Confidence 455678899999999865444332 11 1122233332111111 4 4899999999999999998875 21111
Q ss_pred ccccccccceeeecCCCCceeeeecCCCccCCCCCChH-HHHHHHHHHHhhhh-CCccEEEecCCCC
Q 020492 92 VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSK-VRSWWGSLVKDFIY-NGVDGIWNDMNEP 156 (325)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~-a~~w~~~~~~~~~~-~Gvdg~~~D~~e~ 156 (325)
.+........ .+ + .. ..-..++ ..+++..+++.|++ ..+|.+|+|.+-+
T Consensus 167 ~~~~~~~~~~-----~~-~--------~~--~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~ 217 (346)
T PF01120_consen 167 DYPPDEEGDE-----NG-P--------AD--GPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWP 217 (346)
T ss_dssp TTTSSCHCHH-----CC-----------H--CCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTS
T ss_pred ccCCCccCCc-----cc-c--------cc--cchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCC
Confidence 1110000000 00 0 00 0000012 23477788888775 7899999998754
No 83
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=75.67 E-value=5.6 Score=28.84 Aligned_cols=56 Identities=21% Similarity=0.471 Sum_probs=38.3
Q ss_pred cccceeeecCCCCceeeeecCCCc---cCCCCCChHHHHHHHHHHHhhh-hCCccEEEecCC
Q 020492 97 SKIDVWIQKADGTPFIGEVWPGPC---VFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 154 (325)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~w~g~~---~~~Df~~p~a~~w~~~~~~~~~-~~Gvdg~~~D~~ 154 (325)
....++.++.+|+-. ..|+|.. ...+...|..+++|.+.+.+.+ ..++||+.+|..
T Consensus 17 ~~~~w~a~~~~g~~i--~~W~~~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 17 PRADWFAKTANGSRI--SEWPGYPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred cCchhhccccCccce--eecCCCCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 345666677666543 3455432 3356777999999999887655 578999999964
No 84
>PRK13840 sucrose phosphorylase; Provisional
Probab=75.59 E-value=3.3 Score=40.78 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=75.0
Q ss_pred CHHHHHHHHHH-HHhcCCCceEEEEecccCC--C--c----eee-eecCCCCCChHHHHHHHHHCCCEEEeeeCC-cccc
Q 020492 18 SDKRVREICRT-FREKGIPCDVIWMDIDYMD--G--F----RCF-TFDKERFPDPKSLAADLHLNGFKAIWMLDP-GIKH 86 (325)
Q Consensus 18 ~~~~v~~~~~~-~~~~~iP~d~i~iD~~w~~--~--~----~~f-~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P-~i~~ 86 (325)
+-..+.+.++. ++. + ++.|||=+-+.. + . .|| .+|+ +|-+.+++.+.++ |+|+++-+-+ +++.
T Consensus 18 dL~gl~~kLd~yL~~--l-v~~vhllPff~psp~sD~GYdv~DY~~VDP-~fGt~eDf~~L~~--giklmlDlV~NHtS~ 91 (495)
T PRK13840 18 GLKSLTALLDGRLDG--L-FGGVHILPFFYPIDGADAGFDPIDHTKVDP-RLGDWDDVKALGK--THDIMADLIVNHMSA 91 (495)
T ss_pred CHhHHHHHHHHHHHH--H-hCeEEECCCccCCCCCCCCCCCcChhhcCc-ccCCHHHHHHHHh--CCeEEEEECCCcCCC
Confidence 55667777775 444 3 788988766621 1 1 122 2443 6666666555553 8999976543 4443
Q ss_pred CCCccccccc-------cccceeeecC-------------------CCCcee---------eeecCCC---ccCCCCCCh
Q 020492 87 EDGYFVYDSG-------SKIDVWIQKA-------------------DGTPFI---------GEVWPGP---CVFPDYTQS 128 (325)
Q Consensus 87 ~~~~~~~~~~-------~~~~~~~~~~-------------------~g~~~~---------~~~w~g~---~~~~Df~~p 128 (325)
+.. -|+++ .-.++|+..+ .|.++. ..+|..- ..-+|+.||
T Consensus 92 ~h~--WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP 169 (495)
T PRK13840 92 ESP--QFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSA 169 (495)
T ss_pred CcH--HHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCH
Confidence 322 22221 1234454211 011111 1133321 234678999
Q ss_pred HHHHHHHHHHHhhhhCCccEEEecCC
Q 020492 129 KVRSWWGSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 129 ~a~~w~~~~~~~~~~~Gvdg~~~D~~ 154 (325)
++++...+.++.+++.|||||-+|.-
T Consensus 170 ~V~~~i~~il~fwl~~GVDgfRLDAv 195 (495)
T PRK13840 170 AGWEYLMSILDRFAASHVTLIRLDAA 195 (495)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEech
Confidence 99999999999999999999999974
No 85
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=74.59 E-value=17 Score=33.32 Aligned_cols=193 Identities=14% Similarity=0.058 Sum_probs=100.3
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCCceEEEEecc--cC---CCceeee---------ecCCCC--CChHHHHHHHHHCCCE
Q 020492 12 CRWSYDSDKRVREICRTFREKGIPCDVIWMDID--YM---DGFRCFT---------FDKERF--PDPKSLAADLHLNGFK 75 (325)
Q Consensus 12 s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~--w~---~~~~~f~---------~d~~~F--Pd~~~~~~~L~~~G~k 75 (325)
+| .|.+.+.|+++++.|...++..=.+++.++ |- ..+-..+ -....+ .+++++++..+++|++
T Consensus 9 aR-~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~ 87 (303)
T cd02742 9 SR-HFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIE 87 (303)
T ss_pred cc-cCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCE
Confidence 45 678899999999999999998666666533 31 0000000 001111 2468999999999999
Q ss_pred EEeeeC-CccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCC
Q 020492 76 AIWMLD-PGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 76 ~~~~~~-P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~ 154 (325)
++.-|+ |.=.. .=...+. ++.....++ ..+......+|.++|++.+..+++++.+.+.-
T Consensus 88 viPEiD~PGH~~-a~~~~~p-----~l~~~~~~~-----~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf--------- 147 (303)
T cd02742 88 VIPEIDMPGHST-AFVKSFP-----KLLTECYAG-----LKLRDVFDPLDPTLPKGYDFLDDLFGEIAELF--------- 147 (303)
T ss_pred EEEeccchHHHH-HHHHhCH-----HhccCcccc-----CCCCCCCCccCCCCccHHHHHHHHHHHHHHhC---------
Confidence 997665 42100 0000010 000000011 11112234589999999999999998877531
Q ss_pred CCCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCC--CCcce--eee
Q 020492 155 EPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIG--SQRYA--ATW 230 (325)
Q Consensus 155 e~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G--~qr~~--~~w 230 (325)
|...+|-|.+|.... ...+.+|..+ .+.+.+.+++. +++++++.-..... ..+-. ..|
T Consensus 148 ------------~~~~iHiGgDE~~~~---~~~~~l~~~f-~~~~~~~v~~~--g~~~~~W~d~~~~~~~l~~~~ii~~W 209 (303)
T cd02742 148 ------------PDRYLHIGGDEAHFK---QDRKHLMSQF-IQRVLDIVKKK--GKKVIVWQDGFDKKMKLKEDVIVQYW 209 (303)
T ss_pred ------------CCCeEEecceecCCC---CCHHHHHHHH-HHHHHHHHHHc--CCeEEEecccccCCCCCCCCeEEEEc
Confidence 112334443332110 1123344443 33344445443 57888887654433 12222 378
Q ss_pred cCCCCCCchHHHH
Q 020492 231 TGDNVSNWEHLHM 243 (325)
Q Consensus 231 ~GD~~s~W~~L~~ 243 (325)
.++.....+.++.
T Consensus 210 ~~~~~~~~~~~~~ 222 (303)
T cd02742 210 DYDGDKYNVELPE 222 (303)
T ss_pred cCCCCcchHHHHH
Confidence 7765433334443
No 86
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=74.20 E-value=29 Score=32.11 Aligned_cols=114 Identities=11% Similarity=0.161 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCceEEEE-ec-ccCCCceeeeecCCCCC---------------ChHHHHHHHHHCCCEEE
Q 020492 15 SYDSDKRVREICRTFREKGIPCDVIWM-DI-DYMDGFRCFTFDKERFP---------------DPKSLAADLHLNGFKAI 77 (325)
Q Consensus 15 ~y~~~~~v~~~~~~~~~~~iP~d~i~i-D~-~w~~~~~~f~~d~~~FP---------------d~~~~~~~L~~~G~k~~ 77 (325)
.+.+.+.|+++++.|...++..=.+++ |+ +| ......|| +.+++++..+++|++++
T Consensus 13 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~-------rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vI 85 (311)
T cd06570 13 HFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGF-------RIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVV 85 (311)
T ss_pred CCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCc-------eeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEE
Confidence 356789999999999999998655555 32 33 22222222 46899999999999999
Q ss_pred eeeC-CccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh
Q 020492 78 WMLD-PGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 143 (325)
Q Consensus 78 ~~~~-P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~ 143 (325)
.-++ |.=...- ...|.+ + ...++... ....|.-....+|.++|++.++.+++++.+.+
T Consensus 86 PEId~PGH~~a~-~~~ype-----l-~~~~~~~~-~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 86 PEIDVPGHASAI-AVAYPE-----L-ASGPGPYV-IERGWGVFEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred EeecCccchHHH-HHhCHH-----h-ccCCCccc-cccccccCCCccCCCChhHHHHHHHHHHHHHH
Confidence 7765 5211000 000111 1 00111000 00112112335899999999999999887764
No 87
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=73.20 E-value=6 Score=28.20 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCC
Q 020492 34 IPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 34 iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P 82 (325)
-+++++++|.. -..++.|+.||++|.+++-+++-
T Consensus 25 ~~~~v~~iD~~---------------~~~~~~I~~L~~~G~~vicY~s~ 58 (74)
T PF03537_consen 25 PDVDVVVIDLF---------------DFSKEEIARLKAQGKKVICYFSI 58 (74)
T ss_dssp SS-SEEEE-SB---------------S--HHHHHHHHHTT-EEEEEEES
T ss_pred CCCCEEEECCc---------------cCCHHHHHHHHHCCCEEEEEEeC
Confidence 56788888833 24589999999999998877663
No 88
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=72.24 E-value=45 Score=30.62 Aligned_cols=116 Identities=8% Similarity=0.042 Sum_probs=70.3
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccC-CCceeeeecCCCCC--ChHHHHHHHHHCCCEEEeeeC-Cc-cc
Q 020492 11 QCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYM-DGFRCFTFDKERFP--DPKSLAADLHLNGFKAIWMLD-PG-IK 85 (325)
Q Consensus 11 ~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~-~~~~~f~~d~~~FP--d~~~~~~~L~~~G~k~~~~~~-P~-i~ 85 (325)
.+|..+.+.+.++++++.+...++..=.+.+.+.+. .+.....-++..+. +.+++++..+++|+.++.-+. |. ..
T Consensus 8 ~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 8 LKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 355567889999999999999999765666654331 11111111122332 478999999999999997554 31 10
Q ss_pred cCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh
Q 020492 86 HEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 143 (325)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~ 143 (325)
.--..+.|... + .. +.....+|.++|++.++.+++++.+.+
T Consensus 88 ~~l~~~~~~~l-------~-~~---------~~~~~~l~~~~~~t~~fi~~li~ev~~ 128 (301)
T cd06565 88 FILKHPEFRHL-------R-EV---------DDPPQTLCPGEPKTYDFIEEMIRQVLE 128 (301)
T ss_pred HHHhCcccccc-------c-cc---------CCCCCccCCCChhHHHHHHHHHHHHHH
Confidence 00000001000 0 00 111345899999999999999998776
No 89
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.83 E-value=23 Score=24.29 Aligned_cols=58 Identities=16% Similarity=0.464 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEe
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIW 78 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~ 78 (325)
-.+.++++.+.++++.+..+.....-..+.....+.-+. .++....+.|+++|+++.+
T Consensus 13 G~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 13 GQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred CHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeeeC
Confidence 456788889999999998886543211233333333222 5677999999999998653
No 90
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=67.64 E-value=6.9 Score=38.35 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=30.8
Q ss_pred cCCCCCChHHHHHHHHHHHhhhhCCccEEEecCC
Q 020492 121 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 121 ~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~ 154 (325)
.-+||.||++++...+.++.+++.|||||-+|.-
T Consensus 158 pDLN~~np~v~e~i~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 158 IDLDVTSETTKRFIRDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3478999999999999999999999999999986
No 91
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.57 E-value=25 Score=32.53 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeC-CccccCCCcccccccc
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD-PGIKHEDGYFVYDSGS 97 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~-P~i~~~~~~~~~~~~~ 97 (325)
+++|..+++.|++.+|-+.+++|- +|. .+ |.-..+..+|..+|+++.+... |.-..+-..-+-+||.
T Consensus 91 d~dV~RLID~frel~~~v~sVViT-qye----------d~-p~a~aF~~rLEr~Gikvy~H~~ikGYPtD~~~IvS~EG~ 158 (493)
T COG4868 91 DQDVFRLIDKFRELDIKVGSVVIT-QYE----------DQ-PAADAFRTRLERNGIKVYLHYPIKGYPTDVDHIVSDEGM 158 (493)
T ss_pred hHHHHHHHHHHHhcCeeeeeEEEE-ecC----------CC-hhHHHHHHHHHhcCcceEEecccCCCCCchhheeCcccC
Confidence 478999999999999999999986 432 12 5567899999999999876532 3222222223445566
Q ss_pred ccceeeecC
Q 020492 98 KIDVWIQKA 106 (325)
Q Consensus 98 ~~~~~~~~~ 106 (325)
.+.-++++.
T Consensus 159 GkN~YieTt 167 (493)
T COG4868 159 GKNAYIETT 167 (493)
T ss_pred Cccchhhcc
Confidence 666566543
No 92
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=65.90 E-value=59 Score=30.53 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCceEEEEec--ccC---CC------ceeeeecCCCC--CChHHHHHHHHHCCCEEEeeeC
Q 020492 15 SYDSDKRVREICRTFREKGIPCDVIWMDI--DYM---DG------FRCFTFDKERF--PDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 15 ~y~~~~~v~~~~~~~~~~~iP~d~i~iD~--~w~---~~------~~~f~~d~~~F--Pd~~~~~~~L~~~G~k~~~~~~ 81 (325)
.+.+.+.|+++++.|...++..=.+++.+ +|- .. .+.+.- ...+ .+.+++++..+++|+++++-|+
T Consensus 13 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~-~~~YT~~di~eiv~yA~~rgI~vIPEID 91 (348)
T cd06562 13 HFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSP-SEVYTPEDVKEIVEYARLRGIRVIPEID 91 (348)
T ss_pred cCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCC-CceECHHHHHHHHHHHHHcCCEEEEecc
Confidence 35678999999999999999866666543 231 11 111110 0112 2478999999999999998765
Q ss_pred -CccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh
Q 020492 82 -PGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 143 (325)
Q Consensus 82 -P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~ 143 (325)
|.=...- ...+. .+.+...+.. ....-......+|.++|++.++.+++++.+.+
T Consensus 92 ~PGH~~a~-~~~~p-----~l~~~~~~~~--~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~ 146 (348)
T cd06562 92 TPGHTGSW-GQGYP-----ELLTGCYAVW--RKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSE 146 (348)
T ss_pred CchhhHHH-HHhCh-----hhhCCCCccc--cccccCCCCccccCCChhHHHHHHHHHHHHHH
Confidence 5211000 00010 0111000000 00000012335899999999999999988775
No 93
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=65.60 E-value=21 Score=33.18 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEecccCCC---c------eeee--------------ecCCCCC--ChHHHHHHHH
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWMDIDYMDG---F------RCFT--------------FDKERFP--DPKSLAADLH 70 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~---~------~~f~--------------~d~~~FP--d~~~~~~~L~ 70 (325)
|.+.+.|+++++.|...++..=.+++.++|.-. . +.+. -....+. +.+++++..+
T Consensus 13 ~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 92 (326)
T cd06564 13 YYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAK 92 (326)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHH
Confidence 557899999999999999986666666565210 0 0000 0111222 4789999999
Q ss_pred HCCCEEEeeeC-CccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh
Q 020492 71 LNGFKAIWMLD-PGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 143 (325)
Q Consensus 71 ~~G~k~~~~~~-P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~ 143 (325)
++|++++.-++ |.=.. .=...+.+... .. + .. ......+|.++|++.+..+++++.+.+
T Consensus 93 ~rgI~vIPEID~PGH~~-a~~~~~pel~~-----~~-~------~~-~~~~~~l~~~~~~t~~f~~~l~~E~~~ 152 (326)
T cd06564 93 DRGVNIIPEIDSPGHSL-AFTKAMPELGL-----KN-P------FS-KYDKDTLDISNPEAVKFVKALFDEYLD 152 (326)
T ss_pred HcCCeEeccCCCcHHHH-HHHHhhHHhcC-----CC-c------cc-CCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 99999986554 42100 00000110000 00 0 00 122345899999999999999988775
No 94
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=63.16 E-value=20 Score=33.33 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=68.4
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCCceEEEEecc--cC---CCceee----eecCC----CC--CChHHHHHHHHHCCCEE
Q 020492 12 CRWSYDSDKRVREICRTFREKGIPCDVIWMDID--YM---DGFRCF----TFDKE----RF--PDPKSLAADLHLNGFKA 76 (325)
Q Consensus 12 s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~--w~---~~~~~f----~~d~~----~F--Pd~~~~~~~L~~~G~k~ 76 (325)
+| .|.+.+.++++++.|...++..=.+++.++ |. ..+... .+... .+ -+++++++..+++|+++
T Consensus 11 aR-~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~V 89 (351)
T PF00728_consen 11 AR-HFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEV 89 (351)
T ss_dssp SS-S-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EE
T ss_pred CC-CCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCce
Confidence 45 677899999999999999998655555533 21 111000 01110 12 25789999999999999
Q ss_pred EeeeC-Cc-cccC-CCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhC-CccEEEe
Q 020492 77 IWMLD-PG-IKHE-DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN-GVDGIWN 151 (325)
Q Consensus 77 ~~~~~-P~-i~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~-Gvdg~~~ 151 (325)
|+-|+ |. ...- ..++.+. ... + ..+........+......+|.++|++.+...++++.+.+. .-..|-+
T Consensus 90 IPeid~PGH~~~~l~~~p~~~---~~~-~--~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~iHi 162 (351)
T PF00728_consen 90 IPEIDTPGHAEAWLKAYPELG---CSA-W--PEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYIHI 162 (351)
T ss_dssp EEEEEESSS-HHHHHHHHHHC---CCH-T--TCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred eeeccCchHHHHHHHhCchhh---ccc-c--ccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeEEe
Confidence 97665 42 1100 0011110 000 0 0011111111111123458999999999999999887753 3334433
No 95
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=61.77 E-value=17 Score=27.54 Aligned_cols=47 Identities=13% Similarity=0.243 Sum_probs=39.7
Q ss_pred CChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHHHHhhhhhc
Q 020492 270 ATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFWFKL 324 (325)
Q Consensus 270 ~~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~~~~~~~~ 324 (325)
.++++..+|.++|.+-|.-. ..+-|.|.+.....+|++.++++=|.+
T Consensus 19 i~~~~l~eLve~GlIep~~~--------~~~~~~F~~~~l~r~~~a~rL~~dl~i 65 (101)
T PRK10265 19 VSEEELNEIVGLGVIEPREI--------QETTWVFDDHAAIVVQRAVRLRHELAL 65 (101)
T ss_pred cCHHHHHHHHHCCCeecCCC--------CcccceECHHHHHHHHHHHHHHHHcCC
Confidence 58999999999999998442 347799988899999999999987654
No 96
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=59.74 E-value=14 Score=32.19 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=43.3
Q ss_pred HHHHHHHhc-CCCceEEEE--ec-cc-----CCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCcccc
Q 020492 24 EICRTFREK-GIPCDVIWM--DI-DY-----MDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKH 86 (325)
Q Consensus 24 ~~~~~~~~~-~iP~d~i~i--D~-~w-----~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~ 86 (325)
.+++.+|+. .+|+|+-.+ ++ .| ..+-...++-.|.-+.+...++.+|+.|+|.++.++|.-..
T Consensus 51 ~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~ 122 (220)
T COG0036 51 PVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPL 122 (220)
T ss_pred HHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 345555554 578887653 21 12 12223356666788899999999999999999999997544
No 97
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=59.69 E-value=14 Score=31.48 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=32.3
Q ss_pred CceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccC
Q 020492 48 GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHE 87 (325)
Q Consensus 48 ~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~ 87 (325)
+-.-|++..+.=.++.++++++|++|+|+++.+.|.-..+
T Consensus 87 gas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve 126 (224)
T KOG3111|consen 87 GASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVE 126 (224)
T ss_pred CcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHH
Confidence 3445777766666799999999999999999999976543
No 98
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=58.85 E-value=1.3e+02 Score=28.66 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEE---e--cccCCCceeeeecCCCCC---C-hHHHHHHHHHCCCEEEeeeCCccccCCCc
Q 020492 20 KRVREICRTFREKGIPCDVIWM---D--IDYMDGFRCFTFDKERFP---D-PKSLAADLHLNGFKAIWMLDPGIKHEDGY 90 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~i---D--~~w~~~~~~f~~d~~~FP---d-~~~~~~~L~~~G~k~~~~~~P~i~~~~~~ 90 (325)
-+..+.++.++++|+-.=++.. | +=|-+...+|+ ...-| | ++++++.+|+.|+|++++..+ ..-..
T Consensus 81 fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n--~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-~DW~~-- 155 (384)
T smart00812 81 FDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWN--AVDTGPKRDLVGELADAVRKRGLKFGLYHSL-FDWFN-- 155 (384)
T ss_pred CCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCc--ccCCCCCcchHHHHHHHHHHcCCeEEEEcCH-HHhCC--
Confidence 3456778888888875433321 2 11222233332 22222 4 489999999999999998775 11101
Q ss_pred cccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHH---HHHHHhhhh-CCccEEEecCCC
Q 020492 91 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWW---GSLVKDFIY-NGVDGIWNDMNE 155 (325)
Q Consensus 91 ~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~---~~~~~~~~~-~Gvdg~~~D~~e 155 (325)
+.|... .+.+.. ....+...++. ..+++.|++ .|-|.+|+|.+-
T Consensus 156 p~y~~~-------~~~~~~--------------~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 156 PLYAGP-------TSSDED--------------PDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred Cccccc-------cccccc--------------cccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 112100 000000 01123334444 778888875 677999999864
No 99
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=58.44 E-value=79 Score=29.77 Aligned_cols=119 Identities=8% Similarity=0.005 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCceEEEEec--ccC---CC------ceeeeec---------------CCCC--CChHHHH
Q 020492 15 SYDSDKRVREICRTFREKGIPCDVIWMDI--DYM---DG------FRCFTFD---------------KERF--PDPKSLA 66 (325)
Q Consensus 15 ~y~~~~~v~~~~~~~~~~~iP~d~i~iD~--~w~---~~------~~~f~~d---------------~~~F--Pd~~~~~ 66 (325)
.|.+.+.|+++++.|...++..=.+++-+ +|- .. .+.+.-. ...+ .+.++++
T Consensus 13 ~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv 92 (357)
T cd06563 13 HFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIV 92 (357)
T ss_pred cCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHH
Confidence 35678999999999999999865555532 331 11 1111110 0112 2468999
Q ss_pred HHHHHCCCEEEeeeC-CccccC--CCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh
Q 020492 67 ADLHLNGFKAIWMLD-PGIKHE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 143 (325)
Q Consensus 67 ~~L~~~G~k~~~~~~-P~i~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~ 143 (325)
+..+++|++++.-|+ |.=... ..++-+. .......+... .......+|.++|++.++.+++++.+.+
T Consensus 93 ~yA~~rgI~VIPEID~PGH~~a~l~~~pel~--------~~~~~~~~~~~--~~~~~~~L~~~~~~t~~f~~~ll~E~~~ 162 (357)
T cd06563 93 AYAAERGITVIPEIDMPGHALAALAAYPELG--------CTGGPGSVVSV--QGVVSNVLCPGKPETYTFLEDVLDEVAE 162 (357)
T ss_pred HHHHHcCCEEEEecCCchhHHHHHHhCcccc--------CCCCCCccccc--cCcCCCccCCCChhHHHHHHHHHHHHHH
Confidence 999999999997665 421000 0011110 00000000000 0112345899999999999999988775
No 100
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=57.65 E-value=41 Score=29.88 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEee
Q 020492 17 DSDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 17 ~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~ 79 (325)
.+.+.++++++.+.+.+||+-+.+|- .+.+....-+++-..-|++.+.++.+.++|-.+++.
T Consensus 13 ~~~~~l~~i~d~l~~~~ipf~v~vIP-~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 13 SDLEKLKEIADYLYKYGIPFSVAVIP-VYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEe-cccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEE
Confidence 46788999999999999998888775 443322212333333566777888888899888764
No 101
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=57.11 E-value=13 Score=34.50 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEe
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIW 78 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~ 78 (325)
.+.+.++|+.+++.|+|+|+|-+..-+..+ .. -.++...++++.+.|+.+.+
T Consensus 187 ~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~-------~~-~~~i~~~l~~~~~~Gl~i~I 238 (320)
T PF00331_consen 187 RDAYLNLVKDLKARGVPIDGIGLQSHFDAG-------YP-PEQIWNALDRFASLGLPIHI 238 (320)
T ss_dssp HHHHHHHHHHHHHTTHCS-EEEEEEEEETT-------SS-HHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCccceechhhccCCC-------CC-HHHHHHHHHHHHHcCCceEE
Confidence 467899999999999999999765332211 11 12468899999999987655
No 102
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=57.10 E-value=1e+02 Score=30.04 Aligned_cols=126 Identities=9% Similarity=0.139 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEec--ccC---C---------Cceeeeec-------------------CCCCC--
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWMDI--DYM---D---------GFRCFTFD-------------------KERFP-- 60 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~iD~--~w~---~---------~~~~f~~d-------------------~~~FP-- 60 (325)
+.+-+.|+++++.|...++..=.+++-+ +|- . .++.++.. ...|.
T Consensus 18 f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~ 97 (445)
T cd06569 18 FHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRA 97 (445)
T ss_pred CCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHH
Confidence 5689999999999999999876666643 341 0 11111110 01122
Q ss_pred ChHHHHHHHHHCCCEEEeeeC-Ccccc------CCCcccccccc----ccceeeecCCC-Ccee-eeecCCCccCCCCCC
Q 020492 61 DPKSLAADLHLNGFKAIWMLD-PGIKH------EDGYFVYDSGS----KIDVWIQKADG-TPFI-GEVWPGPCVFPDYTQ 127 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~-P~i~~------~~~~~~~~~~~----~~~~~~~~~~g-~~~~-~~~w~g~~~~~Df~~ 127 (325)
+.+++++..+++|++++.-|+ |.=.. +..|+-+.... +..+.+.++.. ..+. ...+ ....+|.++
T Consensus 98 di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~L~p~~ 175 (445)
T cd06569 98 DYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFY--TDNVINPCM 175 (445)
T ss_pred HHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccccccccc--ccccccCCc
Confidence 478999999999999997765 52110 01121111100 01122222211 1111 0111 124589999
Q ss_pred hHHHHHHHHHHHhhhh
Q 020492 128 SKVRSWWGSLVKDFIY 143 (325)
Q Consensus 128 p~a~~w~~~~~~~~~~ 143 (325)
|++.++..++++.+.+
T Consensus 176 ~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 176 PSTYRFVDKVIDEIAR 191 (445)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999887664
No 103
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=57.01 E-value=16 Score=34.88 Aligned_cols=83 Identities=16% Similarity=0.319 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccC----CCceeeeecCCCCCChHHHHHHHHHCCCEEEeee--CC---ccccC---
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYM----DGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML--DP---GIKHE--- 87 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~----~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~--~P---~i~~~--- 87 (325)
..++..++.+++.| +|.|.+|.-|- .+-+.|+| ..-+++++.+++.|+|+...+ +- .|..+
T Consensus 16 ~~~~~~L~~LK~~G--V~GVmvdvWWGiVE~~~p~~ydW-----s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~I 88 (402)
T PF01373_consen 16 NALEAQLRALKSAG--VDGVMVDVWWGIVEGEGPQQYDW-----SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNI 88 (402)
T ss_dssp HHHHHHHHHHHHTT--EEEEEEEEEHHHHTGSSTTB--------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB
T ss_pred HHHHHHHHHHHHcC--CcEEEEEeEeeeeccCCCCccCc-----HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCC
Confidence 36777788888777 69999997772 12233433 356899999999999976554 31 11111
Q ss_pred -CCccccccccccceeeecCCCC
Q 020492 88 -DGYFVYDSGSKIDVWIQKADGT 109 (325)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~~~g~ 109 (325)
=+..+.+.+.+.+++.++..|.
T Consensus 89 pLP~Wv~~~~~~~di~ytd~~G~ 111 (402)
T PF01373_consen 89 PLPSWVWEIGKKDDIFYTDRSGN 111 (402)
T ss_dssp -S-HHHHHHHHHSGGEEE-TTS-
T ss_pred cCCHHHHhccccCCcEEECCCCC
Confidence 0112444445558888888874
No 104
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=56.63 E-value=16 Score=31.05 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCC-CChHHHHHHHHHCCCEEEeeeCCc
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERF-PDPKSLAADLHLNGFKAIWMLDPG 83 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~F-Pd~~~~~~~L~~~G~k~~~~~~P~ 83 (325)
.+++..+++.++..++..+.+++|..... +.++.+.+.- ..++++++.+++.|.++++...+.
T Consensus 70 ~~Qa~~f~~~~~~~~~~~~~i~lDiE~~~--~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 70 AGQVQTFLQYLKANGIKYGTVWIDIEQNP--CQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHHhCCCceeEEEEEEecCC--CCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCcc
Confidence 56777778887776666677788866531 1111111110 124788899999999999987763
No 105
>TIGR03356 BGL beta-galactosidase.
Probab=56.14 E-value=34 Score=33.12 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCC--ceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCcccccccc
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDG--FRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 97 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 97 (325)
...++.++.+++.|+ +++=+...|..- .++-.+|++.+--..++++.|+++|+++++.+..+-.+ ..
T Consensus 54 ~~y~eDi~l~~~~G~--~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P-----~~---- 122 (427)
T TIGR03356 54 HRYEEDVALMKELGV--DAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP-----QA---- 122 (427)
T ss_pred HhHHHHHHHHHHcCC--CeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCcc-----HH----
Confidence 456788888888887 556666677531 11112333333335799999999999999887653211 10
Q ss_pred ccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-C--CccEEEecCCCCCcc
Q 020492 98 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-N--GVDGIWNDMNEPAVF 159 (325)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~--Gvdg~~~D~~e~~~~ 159 (325)
+ .+. | -|.+++..+.|.+..+.+++ . -|+.| .=+|||..+
T Consensus 123 ----l-~~~-g---------------Gw~~~~~~~~f~~ya~~~~~~~~d~v~~w-~t~NEp~~~ 165 (427)
T TIGR03356 123 ----L-EDR-G---------------GWLNRDTAEWFAEYAAVVAERLGDRVKHW-ITLNEPWCS 165 (427)
T ss_pred ----H-Hhc-C---------------CCCChHHHHHHHHHHHHHHHHhCCcCCEE-EEecCccee
Confidence 0 011 1 24567777777777666554 2 36755 788999754
No 106
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=55.69 E-value=10 Score=22.00 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=12.1
Q ss_pred HHHhhhhCCccEEEecC
Q 020492 137 LVKDFIYNGVDGIWNDM 153 (325)
Q Consensus 137 ~~~~~~~~Gvdg~~~D~ 153 (325)
..+.+++.||||+..|.
T Consensus 12 ~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT-SEEEES-
T ss_pred HHHHHHHcCCCEeeCCC
Confidence 34677789999999884
No 107
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=54.81 E-value=41 Score=29.88 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCC---hHHHHHHHHHCCCEEEe
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD---PKSLAADLHLNGFKAIW 78 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd---~~~~~~~L~~~G~k~~~ 78 (325)
.+.++++++.+++.|+|+|+|-+...... ..|+ +++.++++.+.|+.+.+
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~----------~~~~~~~~~~~l~~~~~~g~pi~i 187 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSL----------GSPNIAEIRAALDRFASLGLEIQI 187 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecC----------CCCCHHHHHHHHHHHHHcCCceEE
Confidence 35678888888888888888876422110 1244 46777777777776554
No 108
>PLN02635 disproportionating enzyme
Probab=54.13 E-value=15 Score=36.76 Aligned_cols=85 Identities=15% Similarity=0.266 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCCCCce------------eeeecCCCccCCCCCChHH
Q 020492 63 KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPF------------IGEVWPGPCVFPDYTQSKV 130 (325)
Q Consensus 63 ~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~w~g~~~~~Df~~p~a 130 (325)
+++.+..+++|++++.-+.=+|..++. .+. ..+++|..+.+|.|. .|+.|.-+..-.+--..+.
T Consensus 227 ~~l~~yA~~~Gi~L~gDlpi~Va~dSa-DvW---a~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~P~y~w~~l~~~g 302 (538)
T PLN02635 227 QAVRSYANEKGISIIGDMPIYVGGHSA-DVW---ANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGSPLYDWKAMAKDG 302 (538)
T ss_pred HHHHHHHHHCCCEEEEEeecccCCCcH-HHh---cCHHhhcCCCCCCcceeeeCCCCcCCcccccCCCcCcCHHHHHhcC
Confidence 456667788999976655556665542 222 445555555544332 2444544432222222334
Q ss_pred HHHHHHHHHhhhhCCccEEEec
Q 020492 131 RSWWGSLVKDFIYNGVDGIWND 152 (325)
Q Consensus 131 ~~w~~~~~~~~~~~Gvdg~~~D 152 (325)
-.||.++++..++ -+|.+-+|
T Consensus 303 y~ww~~Rlr~~~~-~~d~lRID 323 (538)
T PLN02635 303 YSWWAGRMRRALE-LYDEFRID 323 (538)
T ss_pred cHHHHHHHHHHHH-hCCeEEec
Confidence 5889999987653 13334444
No 109
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=53.50 E-value=1.4e+02 Score=27.50 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeec-----------CCCCCChHHHHHHHHHCCCEEEeeeCCcccc
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFD-----------KERFPDPKSLAADLHLNGFKAIWMLDPGIKH 86 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d-----------~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~ 86 (325)
+...+.+..+.+++++| -++++|.- ++.|..++. -..|-|.+-+++.++++|+-++-=+.-+ .
T Consensus 75 ~kk~~de~fk~ikdn~~--Na~ViD~K--dd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvF--K 148 (400)
T COG1306 75 LKKRLDELFKLIKDNNI--NAFVIDVK--DDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVF--K 148 (400)
T ss_pred ChhHHHHHHHHHHhCCC--CEEEEEec--CCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEe--e
Confidence 34555666777777887 45777732 223333321 2458999999999999999765322111 0
Q ss_pred CCCccccccccccceeeecCCCCceeeeec------CCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCC
Q 020492 87 EDGYFVYDSGSKIDVWIQKADGTPFIGEVW------PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w------~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~ 154 (325)
++ + ++.+-.. ..-+. .+|+|-.+-.- ...-.++|-.++++-++=...-+...+.|+|=+-+|.-
T Consensus 149 D~-~-l~~~n~f-k~av~-~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~fGfdEiQFDYI 218 (400)
T COG1306 149 DT-I-LAKENPF-KIAVY-KDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYI 218 (400)
T ss_pred ee-e-EEeecCc-eEEEE-cCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHHcCccceeeeEE
Confidence 11 0 1100000 00011 11222111000 00134589999988776555566677789998888753
No 110
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=53.48 E-value=50 Score=29.20 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=17.3
Q ss_pred hHHHHHHHHHCCCEEEeeeC
Q 020492 62 PKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 62 ~~~~~~~L~~~G~k~~~~~~ 81 (325)
.++.++.||++|.|+++.+.
T Consensus 53 ~~~~i~~l~~kG~KVl~sig 72 (255)
T cd06542 53 KETYIRPLQAKGTKVLLSIL 72 (255)
T ss_pred HHHHHHHHhhCCCEEEEEEC
Confidence 57899999999999998754
No 111
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=53.48 E-value=98 Score=28.84 Aligned_cols=179 Identities=12% Similarity=0.108 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEec--ccC---CCceeeee----------cCCCCC--ChHHHHHHHHHCCCEEEe
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWMDI--DYM---DGFRCFTF----------DKERFP--DPKSLAADLHLNGFKAIW 78 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~iD~--~w~---~~~~~f~~----------d~~~FP--d~~~~~~~L~~~G~k~~~ 78 (325)
|.+.+.|+++++.|...++..=.+++-+ +|- +.+-..+- ....+. +.+++++..+++|++++.
T Consensus 14 f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 14 FFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 6689999999999999999876666643 331 11111110 011122 478999999999999997
Q ss_pred eeC-CccccC--CCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhCCccEEEecCCC
Q 020492 79 MLD-PGIKHE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 155 (325)
Q Consensus 79 ~~~-P~i~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e 155 (325)
-++ |.=... ..++-+. ..+. ....+.+ ..-....+|.++|++.+..+++++.+.+. +
T Consensus 94 EiD~PGH~~a~~~~~p~l~---~~~~-----~~~~~~~--~~~~~~~l~~~~~~t~~fl~~v~~E~~~~-f--------- 153 (329)
T cd06568 94 EIDMPGHTNAALAAYPELN---CDGK-----AKPLYTG--IEVGFSSLDVDKPTTYEFVDDVFRELAAL-T--------- 153 (329)
T ss_pred ecCCcHHHHHHHHhChhhc---cCCC-----CCccccc--cCCCCcccCCCCHHHHHHHHHHHHHHHHh-C---------
Confidence 765 421100 0111111 0000 0000000 00012348999999999999998887653 1
Q ss_pred CCccCCCCCCCCCCCccCCCCCCCcccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcce--eeecCC
Q 020492 156 PAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYA--ATWTGD 233 (325)
Q Consensus 156 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~e~~~~~~~~~r~~~~srs~~~G~qr~~--~~w~GD 233 (325)
|...+|.|.+|... .-+..|..+.. .+.+.+++. +++++++.-..-.+..+-. ..|.++
T Consensus 154 -----------~~~~iHiGgDE~~~-----~~~~~~~~f~~-~~~~~v~~~--Gk~~~~W~d~~~~~l~~~~iv~~W~~~ 214 (329)
T cd06568 154 -----------PGPYIHIGGDEAHS-----TPHDDYAYFVN-RVRAIVAKY--GKTPVGWQEIARADLPAGTVAQYWSDR 214 (329)
T ss_pred -----------CCCeEEEecccCCC-----CchHHHHHHHH-HHHHHHHHC--CCeEEEECcccccCCCCCeEEEECCCC
Confidence 11233444333211 12345544433 344555543 6788888775433322222 367664
No 112
>PLN02705 beta-amylase
Probab=52.16 E-value=1.1e+02 Score=30.97 Aligned_cols=87 Identities=11% Similarity=0.162 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEecccC--C--CceeeeecCCCCCChHHHHHHHHHCCCEEEee--eCC---cccc
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWMDIDYM--D--GFRCFTFDKERFPDPKSLAADLHLNGFKAIWM--LDP---GIKH 86 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~--~--~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~--~~P---~i~~ 86 (325)
..+.+.+.+-++.+++.|+ |.|.+|.-|- . +-+.|+ |...+++++-+++.|+|+... ++- .|..
T Consensus 264 l~~~~al~a~L~aLK~aGV--dGVmvDVWWGiVE~~~P~~Yd-----WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD 336 (681)
T PLN02705 264 LVDPEGVRQELSHMKSLNV--DGVVVDCWWGIVEGWNPQKYV-----WSGYRELFNIIREFKLKLQVVMAFHEYGGNASG 336 (681)
T ss_pred ccCHHHHHHHHHHHHHcCC--CEEEEeeeeeEeecCCCCcCC-----cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCC
Confidence 3456778888888887764 9999997772 1 223333 345789999999999996544 431 1111
Q ss_pred C----CCccccccc-cccceeeecCCCC
Q 020492 87 E----DGYFVYDSG-SKIDVWIQKADGT 109 (325)
Q Consensus 87 ~----~~~~~~~~~-~~~~~~~~~~~g~ 109 (325)
+ =+..+.+.+ .++++|.++..|.
T Consensus 337 ~~~IPLP~WV~e~g~~nPDifftDr~G~ 364 (681)
T PLN02705 337 NVMISLPQWVLEIGKDNQDIFFTDREGR 364 (681)
T ss_pred cccccCCHHHHHhcccCCCceeecCCCC
Confidence 1 011233333 3468889888773
No 113
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=51.93 E-value=58 Score=34.57 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=50.1
Q ss_pred CccchhhhhhcCCCCCHHHHHHHHHHHHhcCCCceEEEEecccCC----Cce----ee-eecCCCCCC---hHHHHHHHH
Q 020492 3 PKWSLGYHQCRWSYDSDKRVREICRTFREKGIPCDVIWMDIDYMD----GFR----CF-TFDKERFPD---PKSLAADLH 70 (325)
Q Consensus 3 P~walG~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~~----~f-~~d~~~FPd---~~~~~~~L~ 70 (325)
|.=++-.|..+- .+-+.+.+.+..+++.|| +.|++-+-+.. .++ +| ..|+ .|.. ++.+++.+|
T Consensus 5 p~aTYRLQ~~~~--~tf~~~~~~l~YL~~LGi--s~IyLsPi~~a~~gs~hGYdv~D~~~idp-~lGt~e~f~~Lv~aah 79 (879)
T PRK14511 5 PRATYRLQFHAG--FTFDDAAELVPYFADLGV--SHLYLSPILAARPGSTHGYDVVDHTRINP-ELGGEEGLRRLAAALR 79 (879)
T ss_pred CceeEEEeeCCC--CCHHHHHHHhHHHHHcCC--CEEEECcCccCCCCCCCCCCcCCCCCcCC-CCCCHHHHHHHHHHHH
Confidence 444444444432 256778999999999886 78888765432 111 22 2332 3443 689999999
Q ss_pred HCCCEEEeeeCC
Q 020492 71 LNGFKAIWMLDP 82 (325)
Q Consensus 71 ~~G~k~~~~~~P 82 (325)
++|+++++-+.|
T Consensus 80 ~~Gi~VIlDiV~ 91 (879)
T PRK14511 80 AHGMGLILDIVP 91 (879)
T ss_pred HCCCEEEEEecc
Confidence 999999998766
No 114
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=50.22 E-value=61 Score=29.83 Aligned_cols=97 Identities=18% Similarity=0.265 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEe-cccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCcccccccc
Q 020492 19 DKRVREICRTFREKGIPCDVIWMD-IDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 97 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD-~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 97 (325)
.+.+.+.++.+.+-||. .++|+ ..-. ..-..++.-+..+.+.+-++.-|+|+.+.++=. ++ .
T Consensus 56 ~~R~~~YARllASiGIN--gvvlNNVNa~----~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFa----sP-------~ 118 (328)
T PF07488_consen 56 LTRYRDYARLLASIGIN--GVVLNNVNAN----PKLLTPEYLDKVARLADVFRPYGIKVYLSVNFA----SP-------I 118 (328)
T ss_dssp -HHHHHHHHHHHHTT----EEE-S-SS------CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TT----HH-------H
T ss_pred hhHHHHHHHHHhhcCCc--eEEecccccC----hhhcCHHHHHHHHHHHHHHhhcCCEEEEEeecc----CC-------c
Confidence 46788888888888875 45444 1111 112223344567899999999999999876511 10 0
Q ss_pred ccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhC--CccEEE
Q 020492 98 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN--GVDGIW 150 (325)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~--Gvdg~~ 150 (325)
+.+ |- .--|-.+|++++||++..+.+++. .+-||-
T Consensus 119 ~lg-------gL-----------~TaDPld~~V~~WW~~k~~eIY~~IPDfgGfl 155 (328)
T PF07488_consen 119 ELG-------GL-----------PTADPLDPEVRQWWKDKADEIYSAIPDFGGFL 155 (328)
T ss_dssp HTT-------S------------S---TTSHHHHHHHHHHHHHHHHH-TT--EEE
T ss_pred ccC-------Cc-----------CcCCCCCHHHHHHHHHHHHHHHHhCCCccceE
Confidence 000 10 013677899999999999988862 466653
No 115
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=50.11 E-value=2.1e+02 Score=26.26 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCC---h--HHHHH----HHH-HCCCEEEeeeCCccccCC
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD---P--KSLAA----DLH-LNGFKAIWMLDPGIKHED 88 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd---~--~~~~~----~L~-~~G~k~~~~~~P~i~~~~ 88 (325)
+..+-++++++++.|+ ..+.+- -+.+..++=..|...||+ | ++++. .|+ ..|+||.-|+. .+.-+-
T Consensus 16 ~~nl~~l~~ri~~~~~--~tV~Lq-af~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMP-vlaf~l 91 (294)
T PF14883_consen 16 ERNLDKLIQRIKDMGI--NTVYLQ-AFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMP-VLAFDL 91 (294)
T ss_pred HHHHHHHHHHHHHcCC--CEEEEE-eeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeee-hhhccC
Confidence 4667788889988887 555554 122223444566778887 1 34443 445 45999887754 111110
Q ss_pred -Cccccccccccceeee-cCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CCccEEEe
Q 020492 89 -GYFVYDSGSKIDVWIQ-KADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWN 151 (325)
Q Consensus 89 -~~~~~~~~~~~~~~~~-~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~ 151 (325)
+....+ .... .++.. ...-++.++|++++-.++..+.|.. ..|||+-+
T Consensus 92 p~~~~~~------~~~~~~~~~~---------~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 92 PKVKRAD------EVRTDRPDPD---------GYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred CCcchhh------hccccCCCCC---------CceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 000000 0000 11111 1223789999999988888887776 48999987
No 116
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=49.24 E-value=21 Score=35.31 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCCCCce------------eeeecCCCccCCCCCChHH
Q 020492 63 KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPF------------IGEVWPGPCVFPDYTQSKV 130 (325)
Q Consensus 63 ~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~w~g~~~~~Df~~p~a 130 (325)
+++.+..+++|++++.-+.-+|..++. .+. .++++|..+.+|.|. .|+.|.-+..-.+--..+-
T Consensus 201 ~~~~~yA~~~Gi~L~gDLpigV~~dsa-DvW---a~~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~P~y~w~~l~~~g 276 (497)
T PRK14508 201 KALKAYANDKGIEIIGDLPIYVAYDSA-DVW---ANPELFKLDEDGKPTVVAGVPPDYFSETGQLWGNPVYNWDALRKDG 276 (497)
T ss_pred HHHHHHHHHCCCEEEEeeecccCCCCH-HHH---cChhhhcCCCCCCcceeeeCCCCCCCcccCcCCCCCcCHHHHHhcC
Confidence 455666788999877666656666542 222 455556555554331 2444543332111111223
Q ss_pred HHHHHHHHHhhhhCCccEEEec
Q 020492 131 RSWWGSLVKDFIYNGVDGIWND 152 (325)
Q Consensus 131 ~~w~~~~~~~~~~~Gvdg~~~D 152 (325)
-+||.++++...+ -+|.+.+|
T Consensus 277 y~ww~~rlr~~~~-~~~~lRID 297 (497)
T PRK14508 277 YRWWIERLRRSFK-LYDIVRID 297 (497)
T ss_pred cHHHHHHHHHHHH-hCCeEEec
Confidence 5899999987553 23334444
No 117
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=48.93 E-value=56 Score=34.46 Aligned_cols=62 Identities=8% Similarity=0.110 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCC----Cce----e-eeecCCCCC---ChHHHHHHHHHCCCEEEeeeCC
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMD----GFR----C-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~~----~-f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P 82 (325)
+-+.+.+.++.+++.|| +.|++-+-+.. .+| + +..|+ .|- +++.+++.+|++|+++++-+.|
T Consensus 14 tf~~~~~~L~YL~~LGv--~~V~lsPi~~a~~gs~hGYdv~D~~~idp-~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGV--SHLYLSPILTAVPGSTHGYDVVDHSEINP-ELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCC--CEEEeCcCccCCCCCCCCCCCCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 56778899999999887 88988765532 111 2 22332 444 3689999999999999998766
No 118
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=48.50 E-value=88 Score=24.97 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHh-cCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCC-ccc
Q 020492 19 DKRVREICRTFRE-KGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP-GIK 85 (325)
Q Consensus 19 ~~~v~~~~~~~~~-~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P-~i~ 85 (325)
.+++.+.++.+++ .+++..-+ ...||+..+.-.|- =|+..+.++.|.++|+|-++.+.| |+.
T Consensus 40 ~~~~~~~~~~v~~~l~~~~~~~--~~~fqS~~g~~~Wl---~P~~~~~l~~l~~~G~~~i~v~p~gF~~ 103 (135)
T cd00419 40 PDQCEETARLVAERLGLPFDEY--ELAYQSRFGPGEWL---EPSTDDALEELAKEGVKNVVVVPIGFVS 103 (135)
T ss_pred HHHHHHHHHHHHHHhCCCCCCE--EEEecCCCCCCCCC---CCCHHHHHHHHHHcCCCeEEEECCcccc
Confidence 4667777777654 55444332 23566544422232 277899999999999998888888 444
No 119
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=46.75 E-value=1.1e+02 Score=22.36 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=35.5
Q ss_pred HHHHHHHH-HHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHC-CCE
Q 020492 20 KRVREICR-TFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN-GFK 75 (325)
Q Consensus 20 ~~v~~~~~-~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~-G~k 75 (325)
+++...++ .++++++|...+-....+-...-.|-+..+.-+|+.++++.|... +.|
T Consensus 25 ~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~R 82 (88)
T PF04468_consen 25 EEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKTR 82 (88)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCce
Confidence 34444444 455678766555433333233445667788889999999999986 544
No 120
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=46.69 E-value=23 Score=32.89 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCC--ceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCcccc
Q 020492 20 KRVREICRTFREKGIP--CDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKH 86 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP--~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~ 86 (325)
++-.+.++++++.|+- +.++.+-.+| +...|.-++++++..++.|+++++-++|-|-.
T Consensus 16 ~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~---------~~~~~~~~~ell~~Anklg~~vivDvnPsil~ 75 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRIFTSLLIPEED---------AELYFHRFKELLKEANKLGLRVIVDVNPSILK 75 (360)
T ss_pred hhHHHHHHHHHHcCccceeeecccCCch---------HHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHh
Confidence 4456889999998864 2222222121 23456667899999999999999999996543
No 121
>PRK13663 hypothetical protein; Provisional
Probab=46.15 E-value=1.8e+02 Score=28.20 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEee
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~ 79 (325)
+++|+.+++.||+.|+-+.+++|- .|.+ =|.-..+.++|..+|+|+-..
T Consensus 91 d~dVLRLiD~fr~~gl~V~sVVIT-qy~~-----------qp~a~~F~~rLe~~GIkvy~H 139 (493)
T PRK13663 91 DQDVLRLIDDFRELGLYVGSVVIT-QYDG-----------QPAADAFRNRLERLGIKVYRH 139 (493)
T ss_pred hHHHHHHHHHHHhcCceeeeEEEE-ecCC-----------ChHHHHHHHHHHHCCCceEEe
Confidence 588999999999999999999986 3321 123468999999999998764
No 122
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=45.71 E-value=78 Score=26.05 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCC-hHHHHHHHHHCCCEEEeee
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD-PKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd-~~~~~~~L~~~G~k~~~~~ 80 (325)
.+..++.++.+.+.|||.++-++. -+|=|+ +.++++..+++|+++++-.
T Consensus 15 ~~~mk~Aa~~L~~fgi~ye~~VvS-------------AHRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 15 WDTMKKAAEILEEFGVPYEVRVVS-------------AHRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEe-------------ccCCHHHHHHHHHHHHHCCCeEEEec
Confidence 455667788888999999998876 446676 4788999999999998764
No 123
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=45.30 E-value=31 Score=30.16 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=40.6
Q ss_pred HHHHHHHhc--CCCceEEEEe--c-ccC-----CCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccc
Q 020492 24 EICRTFREK--GIPCDVIWMD--I-DYM-----DGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIK 85 (325)
Q Consensus 24 ~~~~~~~~~--~iP~d~i~iD--~-~w~-----~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~ 85 (325)
++++.+|+. ++|+|+..+= + .|. .+-...++--|.=+++..+++.+|+.|+|.++.++|...
T Consensus 47 ~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp 118 (220)
T PRK08883 47 PICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATP 118 (220)
T ss_pred HHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 345556653 6888877532 1 111 122234444454467899999999999999999999653
No 124
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=45.14 E-value=2.8e+02 Score=28.71 Aligned_cols=125 Identities=13% Similarity=0.052 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEE-ecccC--C-CceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCccccc
Q 020492 19 DKRVREICRTFREKGIPCDVIWM-DIDYM--D-GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 94 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~i-D~~w~--~-~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~ 94 (325)
++.+.+.++.|+++|+.. +-+ ...|. . ..+.|.|. +-|.. +++.+++.|+++++-..|.-.. +...
T Consensus 29 ~~~w~ddl~~mk~~G~N~--V~ig~faW~~~eP~eG~fdf~---~~D~~-~l~~a~~~Gl~vil~t~P~g~~----P~Wl 98 (673)
T COG1874 29 RETWMDDLRKMKALGLNT--VRIGYFAWNLHEPEEGKFDFT---WLDEI-FLERAYKAGLYVILRTGPTGAP----PAWL 98 (673)
T ss_pred HHHHHHHHHHHHHhCCCe--eEeeeEEeeccCccccccCcc---cchHH-HHHHHHhcCceEEEecCCCCCC----chHH
Confidence 488899999999999854 444 33442 2 23444443 44555 7999999999998876572111 1222
Q ss_pred cccccceeeecCCCCceeeeecCCCccCCCCCChHHHHH---HHHHHH-hhhhC--CccEEEecCCCCCc
Q 020492 95 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSW---WGSLVK-DFIYN--GVDGIWNDMNEPAV 158 (325)
Q Consensus 95 ~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w---~~~~~~-~~~~~--Gvdg~~~D~~e~~~ 158 (325)
....+.++..++++....- |....+.+++|-=++. ..++++ +++.. +|-+|.+|. |...
T Consensus 99 ~~~~PeiL~~~~~~~~~~~----g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-eY~~ 163 (673)
T COG1874 99 AKKYPEILAVDENGRVRSD----GARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-EYGG 163 (673)
T ss_pred hcCChhheEecCCCcccCC----CcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-ccCC
Confidence 2244566666666643221 1222367777722222 222333 22333 367788885 5443
No 125
>PHA02119 hypothetical protein
Probab=44.25 E-value=12 Score=26.10 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=32.3
Q ss_pred HHHhcCCCceEEEEecccCCCceeeeecCCCCCC--hHHHHHHHHHCCCE
Q 020492 28 TFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD--PKSLAADLHLNGFK 75 (325)
Q Consensus 28 ~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd--~~~~~~~L~~~G~k 75 (325)
.+++.=-|+.-++.|.--....-..+++-.+||. +++.++.|++.|+.
T Consensus 20 elkrklapvgkfvademi~~r~f~isf~~~kfp~i~~~divdylr~lgy~ 69 (87)
T PHA02119 20 ELKRKLAPVGKFVADEMIRQRSFKISFDVAKFPAIMPKDIVDYLRSLGYD 69 (87)
T ss_pred HHHHhccchhhHHHHHHHHhheeEEEeccccCCccccHHHHHHHHHccch
Confidence 3344445787777763322222234678889998 59999999999974
No 126
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=44.17 E-value=34 Score=30.01 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=40.4
Q ss_pred HHHHHHHhc--CCCceEEEEe--c-ccC-----CCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCcccc
Q 020492 24 EICRTFREK--GIPCDVIWMD--I-DYM-----DGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKH 86 (325)
Q Consensus 24 ~~~~~~~~~--~iP~d~i~iD--~-~w~-----~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~ 86 (325)
++++.+|+. ++|+|+..+= + .|. .+-...++--+.=+++..+++.+|+.|+|.++.++|....
T Consensus 51 ~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~ 123 (223)
T PRK08745 51 MVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPV 123 (223)
T ss_pred HHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCH
Confidence 355666664 6888876531 1 111 1222234444444678999999999999999999997543
No 127
>PF11308 GHL1-3: Glycosyl hydrolases related to GH101 family, GHL1-GHL3; InterPro: IPR021459 Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed. Currently no function is known.
Probab=44.09 E-value=61 Score=29.97 Aligned_cols=55 Identities=27% Similarity=0.375 Sum_probs=36.0
Q ss_pred ccccceeeecCCCCceeeeecCCCc---cCCCCCChHHHHHHHHHHHhhhh-CCccEEEecCC
Q 020492 96 GSKIDVWIQKADGTPFIGEVWPGPC---VFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMN 154 (325)
Q Consensus 96 ~~~~~~~~~~~~g~~~~~~~w~g~~---~~~Df~~p~a~~w~~~~~~~~~~-~Gvdg~~~D~~ 154 (325)
...++.-|+.+||++..+-.|.+.. +.+.+..|.+ ++.++++++ .|++++-+|.-
T Consensus 70 ~~~~~~~v~~~dGt~~~gf~w~~g~~~~~~p~~~~~~v----~~r~~~i~~~~~~ns~FlDv~ 128 (307)
T PF11308_consen 70 GLYEDAAVRNADGTKKEGFRWGGGRYLNVCPTCALPYV----KRRVEEILKGIGFNSWFLDVD 128 (307)
T ss_pred cccccceeecCCCCCccceecCCcceeccCcccccHHH----HHHHHHHHHhCCCCeEEEecc
Confidence 3445667888999988877665432 2255555544 446666555 78999999853
No 128
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=43.71 E-value=51 Score=26.43 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCCc-eEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEee
Q 020492 19 DKRVREICRTFREKGIPC-DVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~-d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~ 79 (325)
..+-.+.+...++.|+|- ..|.+|.++ +..+-+++..--|=++.+.+.|+..|++++++
T Consensus 76 ~~dA~~A~~~A~~lG~p~gt~IYfavD~--d~~~~~~~~~i~~Y~~g~~~~l~~~gY~~GvY 135 (136)
T PF08924_consen 76 VADARDAVAAARALGFPAGTPIYFAVDY--DATDAECDSAILPYFRGWNSALGASGYRPGVY 135 (136)
T ss_dssp HHHHHHHHHHHHHTT--SS-EEEEE--T--S-B-HH-------HHHHHHHHHGGGT-EEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEeec--CCCchhhhhHHHHHHHHHHHHHhhCCCcceee
Confidence 356678888899999997 566677764 23334444444555799999999999998764
No 129
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=42.99 E-value=82 Score=28.16 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCC
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P 82 (325)
+.+.++++.....++|...|+.|..|. +...+++.|.+.|+.++.-+..
T Consensus 170 ~la~~~i~~a~~~g~~~~~vvaDs~y~--------------~~~~f~~~l~~~~~~~i~~vr~ 218 (273)
T PF13546_consen 170 ELALEMIDRARQAGIPARWVVADSWYG--------------SSPAFRKALRERGLHYIGRVRS 218 (273)
T ss_pred HHHHHHHHHHHhcccccceEEeccccC--------------ChHHHHHHHHHCCceEEEeecc
Confidence 556788899999999999999995542 3457899999999988877654
No 130
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=42.01 E-value=1.8e+02 Score=28.71 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCC--ceee-eecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCccccccc
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDG--FRCF-TFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSG 96 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~~~f-~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~ 96 (325)
...++-++.+++.|+ ++.=+...|..= .+.= .+|++-.-=-..+|+.|+++|++.++.+.=+-. +..+.
T Consensus 73 hry~eDi~Lm~~lG~--~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dl---P~~L~--- 144 (478)
T PRK09593 73 HHYKEDIALFAEMGF--KTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDC---PMHLI--- 144 (478)
T ss_pred HhhHHHHHHHHHcCC--CEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCC---CHHHH---
Confidence 456778888888887 445445556321 0000 011111111258999999999998876542211 10111
Q ss_pred cccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CC--ccEEEecCCCCCccC
Q 020492 97 SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NG--VDGIWNDMNEPAVFK 160 (325)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~G--vdg~~~D~~e~~~~~ 160 (325)
+.-| -|.|+++.++|.+.-+.+++ .| |+ .|+=+|||..+.
T Consensus 145 --------~~~G---------------GW~n~~~v~~F~~YA~~~~~~fgdrVk-~WiT~NEP~~~~ 187 (478)
T PRK09593 145 --------EEYG---------------GWRNRKMVGFYERLCRTLFTRYKGLVK-YWLTFNEINMIL 187 (478)
T ss_pred --------hhcC---------------CCCChHHHHHHHHHHHHHHHHhcCcCC-EEEeecchhhhh
Confidence 0001 35678888988888776664 33 66 678899997653
No 131
>PLN03059 beta-galactosidase; Provisional
Probab=41.85 E-value=72 Score=33.67 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccC---CCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccC
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYM---DGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHE 87 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~ 87 (325)
..+..++.++++|+.|+. +|-.=..|- ...+.|+|.. .-|+..+++..++.|+.+++=.-|+|..+
T Consensus 57 ~p~~W~d~L~k~Ka~GlN--tV~tYV~Wn~HEp~~G~~dF~G--~~DL~~Fl~la~e~GLyvilRpGPYIcAE 125 (840)
T PLN03059 57 TPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPSPGNYYFED--RYDLVKFIKVVQAAGLYVHLRIGPYICAE 125 (840)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEEecccccCCCCCeeeccc--hHHHHHHHHHHHHcCCEEEecCCcceeee
Confidence 578899999999999975 443333452 2356677643 34899999999999999999889999765
No 132
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=41.80 E-value=1e+02 Score=28.35 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHh
Q 020492 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD 140 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~ 140 (325)
.+++.++.+|++|+|+++.+--. . + . .....++.++-+.+.+.+
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~----~-------------------~----------~---~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGA----N-------------------G----------H---VDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCC----C-------------------C----------c---cccCCHHHHHHHHHHHHH
Confidence 35777889999999999875311 0 0 0 012345555555555555
Q ss_pred hh-hCCccEEEecCC
Q 020492 141 FI-YNGVDGIWNDMN 154 (325)
Q Consensus 141 ~~-~~Gvdg~~~D~~ 154 (325)
++ +.|+||+=+|.=
T Consensus 105 ~~~~~g~DGiDiD~E 119 (312)
T cd02871 105 IIKEYGFDGLDIDLE 119 (312)
T ss_pred HHHHhCCCeEEEecc
Confidence 44 589999999873
No 133
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=41.05 E-value=29 Score=27.43 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=42.3
Q ss_pred CCCccchhhhhhcCCCC------------CHHHHHHHHHHHHhcCCCceEEEEecccCCCc-eeeeecCCCCCChHHHHH
Q 020492 1 MPPKWSLGYHQCRWSYD------------SDKRVREICRTFREKGIPCDVIWMDIDYMDGF-RCFTFDKERFPDPKSLAA 67 (325)
Q Consensus 1 lpP~walG~~~s~~~y~------------~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~-~~f~~d~~~FPd~~~~~~ 67 (325)
++|..+++-|.+-.... .++||..+++.++++||.+.+++.-.-..... -...+. .=-||..+.+
T Consensus 37 ~~~~~~l~~~~aF~~~~~G~A~~~Gd~vll~~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~--~~gdp~~lA~ 114 (123)
T PF07485_consen 37 LPPPMGLTSWIAFEPDGDGKAMVMGDFVLLEDEVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIW--GVGDPAKLAR 114 (123)
T ss_pred cCCccccceeEEEEECCCCcEEEeecEEecHHHHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEE--ecCCHHHHHH
Confidence 45666676665554432 37999999999999999999987542221111 111111 1236777777
Q ss_pred HHHH
Q 020492 68 DLHL 71 (325)
Q Consensus 68 ~L~~ 71 (325)
.+++
T Consensus 115 ~vr~ 118 (123)
T PF07485_consen 115 KVRA 118 (123)
T ss_pred HHHH
Confidence 7765
No 134
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=40.83 E-value=20 Score=35.64 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=39.4
Q ss_pred HHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCC-CCc------ee-----eeecCCCccCCCCCChHHHH
Q 020492 65 LAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKAD-GTP------FI-----GEVWPGPCVFPDYTQSKVRS 132 (325)
Q Consensus 65 ~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~-g~~------~~-----~~~w~g~~~~~Df~~p~a~~ 132 (325)
+.+..+++|++++.-+.-+|..++. .+. ...++|..+.+ |.| -- |+.|..+..-.+--..+--.
T Consensus 217 l~~yA~~~~I~L~gDlpi~v~~dsa-DvW---a~~~~F~l~~~~GaP~~agvpPd~Fs~~GQ~WG~P~y~w~~l~~~gy~ 292 (513)
T TIGR00217 217 LKRYANDMGIGLYGDLPVFVAYDSA-DVW---ADPELFCLRASAGAPKPAGLGPDYFLEQGQNWGLPPYDWNVLKARGYE 292 (513)
T ss_pred HHHHHhcCCcEEEEeCcceeCCCcH-HHH---hCHHHhCCCcccCCCCCCCCCCCcccccCCCCCCCCcCHHHHHhcCcH
Confidence 3344555777777666556666542 222 34444544433 444 22 56665554322222233458
Q ss_pred HHHHHHHhhhh
Q 020492 133 WWGSLVKDFIY 143 (325)
Q Consensus 133 w~~~~~~~~~~ 143 (325)
||.++++..++
T Consensus 293 ww~~rlr~~~~ 303 (513)
T TIGR00217 293 WWIKRLGANMQ 303 (513)
T ss_pred HHHHHHHHHHH
Confidence 99999987553
No 135
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=39.81 E-value=1.5e+02 Score=27.03 Aligned_cols=57 Identities=11% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCce-e-eeec-CCCCCChHHHHHHHHHCCCEEEee
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFR-C-FTFD-KERFPDPKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~-~-f~~d-~~~FPd~~~~~~~L~~~G~k~~~~ 79 (325)
.++|++++..+.++ --+|++.|=|+..- . =-+| ...|....+-+.+++++|+|++..
T Consensus 128 pd~VldlL~e~~~r----~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~H 187 (312)
T COG1242 128 PDDVLDLLAEYNKR----YEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTH 187 (312)
T ss_pred cHHHHHHHHHHhhh----eEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEE
Confidence 35666666666655 23566666553210 0 0011 123445567777777778777653
No 136
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=39.65 E-value=48 Score=29.33 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.4
Q ss_pred HHHhhhhCCccEEEecCC
Q 020492 137 LVKDFIYNGVDGIWNDMN 154 (325)
Q Consensus 137 ~~~~~~~~Gvdg~~~D~~ 154 (325)
.++++.+.||||+..|.-
T Consensus 222 ~~~~l~~~GVdgIiTD~p 239 (249)
T PRK09454 222 RARELLRWGVDCICTDRI 239 (249)
T ss_pred HHHHHHHcCCCEEEeCCh
Confidence 466777899999999864
No 137
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised. ; PDB: 3BH1_B.
Probab=38.00 E-value=1.3e+02 Score=29.04 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEee
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~ 79 (325)
+++|+.+++.||+.|+-+.+++|- .|.+ =|.-..+.++|..+|+|+-..
T Consensus 90 d~dVLRLid~fr~~gl~V~sVVIT-~y~~-----------q~~a~~F~~kLe~~gIkvy~H 138 (491)
T PF08903_consen 90 DQDVLRLIDDFRSRGLYVGSVVIT-QYEG-----------QPAADAFKNKLERLGIKVYRH 138 (491)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEE-CE-T------------HHHHHHHHHHHTTT-EEEEE
T ss_pred hHHHHHHHHHHHhcCceeeeEEEE-ecCC-----------CHHHHHHHHHHHHCCCcEEEe
Confidence 588999999999999999999986 3321 122468999999999998765
No 138
>PLN02645 phosphoglycolate phosphatase
Probab=37.74 E-value=1.2e+02 Score=27.90 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeC
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~ 81 (325)
.+++.++++. .+.+.+|.+ |.+--+.+.||.-.+.++.|+++|+++++..+
T Consensus 18 ~~~~~~~~~~-------~~~~~~D~D-----Gtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN 68 (311)
T PLN02645 18 LENADELIDS-------VETFIFDCD-----GVIWKGDKLIEGVPETLDMLRSMGKKLVFVTN 68 (311)
T ss_pred HHHHHHHHHh-------CCEEEEeCc-----CCeEeCCccCcCHHHHHHHHHHCCCEEEEEeC
Confidence 4555555553 478888844 33222345789999999999999999887654
No 139
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=37.62 E-value=49 Score=30.61 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.6
Q ss_pred hHHHHHHHHHCCCEEEee
Q 020492 62 PKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 62 ~~~~~~~L~~~G~k~~~~ 79 (325)
+..+++.+|+.|.+|.+|
T Consensus 253 ~~~f~~~~~~~g~~V~~~ 270 (309)
T cd08613 253 PNRFLARMEAAGTRVILV 270 (309)
T ss_pred CHHHHHHHHHcCCeEEEE
Confidence 578899999999998887
No 140
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.76 E-value=84 Score=21.21 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCceEEEEecccC--CCceeeeecCCCCCChHHHHHHHHHCCCEE
Q 020492 21 RVREICRTFREKGIPCDVIWMDIDYM--DGFRCFTFDKERFPDPKSLAADLHLNGFKA 76 (325)
Q Consensus 21 ~v~~~~~~~~~~~iP~d~i~iD~~w~--~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~ 76 (325)
.+.++++.+.++++.+..+.....-. .+...+.++.. .+.+...+.|+++|+++
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ--EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH--HHHHHHHHHHHHcCCcC
Confidence 57788999999999998776543211 22234555421 26789999999999863
No 141
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=36.75 E-value=1.4e+02 Score=23.59 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEe
Q 020492 14 WSYDSDKRVREICRTFREKG-IPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIW 78 (325)
Q Consensus 14 ~~y~~~~~v~~~~~~~~~~~-iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~ 78 (325)
|++.+.....++++...+.+ +-+..|..-++=..+...-...++-|+++.++.+.+.++|+.+-+
T Consensus 12 Yg~q~a~~A~~fA~all~~gh~~v~iFly~DgV~~~~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~ 77 (126)
T COG1553 12 YGTESAFSALRFAEALLEQGHELVRLFLYQDGVHNGNKGQKPASDEFNLIQAWLELLTEQGVPVKL 77 (126)
T ss_pred CccHHHHHHHHHHHHHHHcCCeEEEEEEeeccccccccCCCCcccccchHHHHHHHHHHcCCcEee
Confidence 45555677788888888875 666666555454433333444555799999999999999997654
No 142
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=36.38 E-value=25 Score=31.17 Aligned_cols=59 Identities=8% Similarity=0.159 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCceEEEEecccCC---CceeeeecCCCCCChHHHHHHHHHCCCEEEeeeC
Q 020492 21 RVREICRTFREKGIPCDVIWMDIDYMD---GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 21 ~v~~~~~~~~~~~iP~d~i~iD~~w~~---~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~ 81 (325)
.+.+.++.+++.|+. +|=|-..|.. ...++..+...+..++++++.+++.|+++++-++
T Consensus 22 ~~~~~~~~~~~~G~n--~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 22 ITEADFDQLKALGFN--TVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp SHHHHHHHHHHTTES--EEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHCCCC--EEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 677888899999974 4444444521 1112234444455578999999999999988655
No 143
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=35.74 E-value=1e+02 Score=29.21 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCCh-HHHHHHHHHCCCEEEe
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDP-KSLAADLHLNGFKAIW 78 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~-~~~~~~L~~~G~k~~~ 78 (325)
-++|++++.++++.++|+-++++.+= +..-| |...-|++ .++.+..++.|+.+++
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPI-QsEGG----DnhaSp~Ff~kLrdi~~Kh~v~fiv 310 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPI-QSEGG----DNHASPDFFRKLRDITKKHGVAFIV 310 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeech-hccCC----CccCCHHHHHHHHHHHHhcCeEEEe
Confidence 37899999999999999999998842 22112 35566774 7888888889988775
No 144
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=35.73 E-value=1.5e+02 Score=26.89 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.4
Q ss_pred CCCChHHHHHHHHHCCCEEEeeeC
Q 020492 58 RFPDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 58 ~FPd~~~~~~~L~~~G~k~~~~~~ 81 (325)
.-|.+.+-|+.++++|+|+++.+-
T Consensus 57 ~c~~~~~dI~~cq~~G~KVlLSIG 80 (280)
T cd02877 57 NCPQLGADIKHCQSKGKKVLLSIG 80 (280)
T ss_pred cchhHHHHHHHHHHCCCEEEEEcc
Confidence 356789999999999999999753
No 145
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=35.64 E-value=66 Score=24.15 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=20.2
Q ss_pred cCCCCCChHHHHHHHHHCCCEEEee
Q 020492 55 DKERFPDPKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 55 d~~~FPd~~~~~~~L~~~G~k~~~~ 79 (325)
..+.+|.-.++++.|+++|.++.+.
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~l 36 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFL 36 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEE
Confidence 3557899999999999999987764
No 146
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=35.11 E-value=57 Score=28.76 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=40.6
Q ss_pred HHHHHHh-cCCCceEEEE--ec-ccC-----CCceeeeecCCC-CCChHHHHHHHHHCCCEEEeeeCCcccc
Q 020492 25 ICRTFRE-KGIPCDVIWM--DI-DYM-----DGFRCFTFDKER-FPDPKSLAADLHLNGFKAIWMLDPGIKH 86 (325)
Q Consensus 25 ~~~~~~~-~~iP~d~i~i--D~-~w~-----~~~~~f~~d~~~-FPd~~~~~~~L~~~G~k~~~~~~P~i~~ 86 (325)
+++.+|+ -++|+|+-.+ ++ .|. .+-...++.-+. ..++..+++.+|+.|+|.++.++|....
T Consensus 50 ~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~ 121 (229)
T PRK09722 50 FVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPV 121 (229)
T ss_pred HHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 4445554 4688887754 22 221 122234555564 3578999999999999999999997543
No 147
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=34.99 E-value=56 Score=29.24 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=13.6
Q ss_pred HHHhhhhCCccEEEecC
Q 020492 137 LVKDFIYNGVDGIWNDM 153 (325)
Q Consensus 137 ~~~~~~~~Gvdg~~~D~ 153 (325)
.++++.++||||+-.|.
T Consensus 244 ~~~~l~~~GVdgIiTD~ 260 (264)
T cd08575 244 DFEEAFDLGADGVMTDS 260 (264)
T ss_pred HHHHHHhcCCCEEEeCC
Confidence 46677789999998885
No 148
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=34.89 E-value=1.2e+02 Score=34.73 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCC----ce----e-eeecCCCCC---ChHHHHHHHHHCCCEEEeeeCC
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDG----FR----C-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~----~~----~-f~~d~~~FP---d~~~~~~~L~~~G~k~~~~~~P 82 (325)
+-+.+.+.++.+++.|| +.|++-+-+... ++ + +.+|+ .|- +++.+++.+|++|+++++-+.|
T Consensus 756 tf~~~~~~l~Yl~~LGv--~~i~lsPi~~a~~gs~hGYdv~D~~~idp-~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGI--SHVYASPILKARPGSTHGYDIVDHSQINP-EIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCC--CEEEECCCcCCCCCCCCCCCCCCCCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 56778899999988886 889988766521 11 1 12232 333 3689999999999999998776
No 149
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=34.85 E-value=1.4e+02 Score=26.68 Aligned_cols=68 Identities=16% Similarity=0.353 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhc--CCCceEEE-EecccCC------------CceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCC
Q 020492 18 SDKRVREICRTFREK--GIPCDVIW-MDIDYMD------------GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~--~iP~d~i~-iD~~w~~------------~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P 82 (325)
|.+.+.++++.+|+. ++|+..+. .++=+.- +.....+...-+....++++.+++.|++.++.++|
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECC
Confidence 457889999999865 78976442 1110100 11111111122233578888888999988888888
Q ss_pred ccc
Q 020492 83 GIK 85 (325)
Q Consensus 83 ~i~ 85 (325)
...
T Consensus 150 ~T~ 152 (256)
T TIGR00262 150 NAD 152 (256)
T ss_pred CCC
Confidence 653
No 150
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=34.67 E-value=1.4e+02 Score=24.87 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEe-cccCCCceeeeecCCC-----C----CC-hHHHHHHHHHCCCEEEee
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMD-IDYMDGFRCFTFDKER-----F----PD-PKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD-~~w~~~~~~f~~d~~~-----F----Pd-~~~~~~~L~~~G~k~~~~ 79 (325)
+.++.++.++.+++.|| |.+++- .++.+ ..+-+.. | +| +..+++...+.|+|+.+-
T Consensus 18 ~~~~W~~~~~~m~~~Gi--dtlIlq~~~~~~----~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~G 84 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGI--DTLILQWTGYGG----FAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVG 84 (166)
T ss_pred CHHHHHHHHHHHHHcCC--cEEEEEEeecCC----cccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEe
Confidence 57889999999999997 555543 33322 2211222 2 23 367788888889998764
No 151
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=34.61 E-value=1.2e+02 Score=29.72 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCC--ceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCcccccccc
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDG--FRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 97 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 97 (325)
...++-++.+++.|+.. .=+...|..= .+.=.+|++-.---+++|+.|+++|++.++.+.=+- -+..+
T Consensus 53 hry~eDi~L~~~lG~~~--yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~d---lP~~L----- 122 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNG--IRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFD---TPEAL----- 122 (467)
T ss_pred hhHHHHHHHHHHcCCCE--EEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCC---CcHHH-----
Confidence 34567778888888744 4444456320 010011111111136999999999999887654221 11011
Q ss_pred ccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CC-ccEEEecCCCCCccC
Q 020492 98 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NG-VDGIWNDMNEPAVFK 160 (325)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~G-vdg~~~D~~e~~~~~ 160 (325)
.+. | -|.|+++.++|.+.-+.+++ .| |+ .|+=+|||..+.
T Consensus 123 ------~~~-G---------------GW~n~~~v~~F~~YA~~~f~~fgdVk-~WiT~NEP~~~~ 164 (467)
T TIGR01233 123 ------HSN-G---------------DFLNRENIEHFIDYAAFCFEEFPEVN-YWTTFNEIGPIG 164 (467)
T ss_pred ------HHc-C---------------CCCCHHHHHHHHHHHHHHHHHhCCCC-EEEEecchhhhh
Confidence 111 1 45789999998887776654 23 66 678899997653
No 152
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=34.55 E-value=2e+02 Score=27.04 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHCCCEEEeeeCCccc
Q 020492 61 DPKSLAADLHLNGFKAIWMLDPGIK 85 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~P~i~ 85 (325)
++++.++.+|+.|.|+.+.++..+.
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~N~~~~ 74 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAVNTLLH 74 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccc
Confidence 4799999999999998887665443
No 153
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=33.87 E-value=2.2e+02 Score=27.81 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCcccccccc
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 97 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 97 (325)
+.+.+++.++...+-||.- ++++-=--+..-.+-.+....|+.+++.+..+.-|+|+-+.+. ..++ ++-
T Consensus 181 n~qR~kDYAR~laSiGINg--~v~NNVNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin----faSP--~~l--- 249 (684)
T COG3661 181 NDQRMKDYARALASIGING--TVLNNVNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN----FASP--MEL--- 249 (684)
T ss_pred chHHHHHHHHHHhhcCcce--EEecccccchhhhheechHhHHHHHHHHHHhhhccceEEEEec----cCCc--ccc---
Confidence 4567778888887777753 4333111111122334444457788999999999999888754 1121 111
Q ss_pred ccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhhC--CccEE--Eec
Q 020492 98 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN--GVDGI--WND 152 (325)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~~--Gvdg~--~~D 152 (325)
|.. ---|--.++++.||++....+++. .+-|| |.|
T Consensus 250 ----------GgL----------~TADPLDe~VrawWkeka~~IY~yIPDFGGFLVKAd 288 (684)
T COG3661 250 ----------GGL----------KTADPLDEAVRAWWKEKADEIYKYIPDFGGFLVKAD 288 (684)
T ss_pred ----------CCc----------CcCCcccHHHHHHHHHHHHHHHHhcccccceEEecc
Confidence 100 002555699999999998887762 35555 444
No 154
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=33.85 E-value=1.5e+02 Score=19.92 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEE
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAI 77 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~ 77 (325)
-.+.++++.+.++|+.++++..-.. .+...+..+ +.|++...+.|+++|+++.
T Consensus 13 G~La~v~~~l~~~~inI~~i~~~~~--~~~~~~rl~---~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 13 GRLAAVTEILSEAGINIRALSIADT--SEFGILRLI---VSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred ChHHHHHHHHHHCCCCEEEEEEEec--CCCCEEEEE---ECCHHHHHHHHHHCCCEEE
Confidence 3567888999999999998876322 122334332 3457799999999999864
No 155
>PLN02950 4-alpha-glucanotransferase
Probab=32.62 E-value=53 Score=35.13 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=43.4
Q ss_pred HHHHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCC-CCc-----eeeeecCCCccCCCCCChHHHHHHHH
Q 020492 63 KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKAD-GTP-----FIGEVWPGPCVFPDYTQSKVRSWWGS 136 (325)
Q Consensus 63 ~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~-g~~-----~~~~~w~g~~~~~Df~~p~a~~w~~~ 136 (325)
++..+..+++|++++.-+.-+|..++. .+. ..+++|..+.. |.| ..|+.|.-+..-.+--..+..+||.+
T Consensus 464 ~~~~~yA~~~Gi~L~GDLpigV~~dSa-DvW---a~p~lF~l~~~aGaPPD~Fs~~GQ~WG~P~ynw~~l~~~gy~ww~~ 539 (909)
T PLN02950 464 SEAAEYARKKGVVLKGDLPIGVDRNSV-DTW---VYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRA 539 (909)
T ss_pred HHHHHHHHHCCCEEEEEeeceeCCCcH-HHh---cCHHHhcCCCccCCCCCcCCcccccCCCCCcCHHHHHhcCcHHHHH
Confidence 456667788999877766666766542 121 33334433221 322 23667765553333223445689999
Q ss_pred HHHhhhh
Q 020492 137 LVKDFIY 143 (325)
Q Consensus 137 ~~~~~~~ 143 (325)
+++...+
T Consensus 540 Rlr~~~~ 546 (909)
T PLN02950 540 RLTQMAK 546 (909)
T ss_pred HHHHHHH
Confidence 9987653
No 156
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=32.39 E-value=1.5e+02 Score=24.49 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=29.4
Q ss_pred CceEEEEecccCCCceeeeecC-CCCCChHHHHHHHHHCCCEEEeee
Q 020492 35 PCDVIWMDIDYMDGFRCFTFDK-ERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 35 P~d~i~iD~~w~~~~~~f~~d~-~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
.+..+++|.+-. . ...+. ..||+..++++.|+++|+++++..
T Consensus 24 ~v~~vv~D~Dgt--l--~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~S 66 (170)
T TIGR01668 24 GIKGVVLDKDNT--L--VYPDHNEAYPALRDWIEELKAAGRKLLIVS 66 (170)
T ss_pred CCCEEEEecCCc--c--ccCCCCCcChhHHHHHHHHHHcCCEEEEEe
Confidence 457788885421 1 11122 568999999999999999987653
No 157
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=31.68 E-value=1.6e+02 Score=19.76 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEe
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIW 78 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~ 78 (325)
+...+.++++..++.|+. ++.+- + ...+.+...+.+..++.|++++.
T Consensus 13 ~~~~~~~~~~~a~~~g~~--~v~iT-D-----------h~~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 13 GALSPEELVKRAKELGLK--AIAIT-D-----------HGNLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred ccCCHHHHHHHHHHcCCC--EEEEe-e-----------CCcccCHHHHHHHHHHcCCeEEE
Confidence 345577888888888874 34332 1 11344445666777778887664
No 158
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=31.52 E-value=92 Score=28.20 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=29.8
Q ss_pred ceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeC
Q 020492 36 CDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 36 ~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~ 81 (325)
.+++.+|.+ |..--..+.||.-++.++.|+++|+++++..+
T Consensus 8 y~~~l~DlD-----Gvl~~G~~~ipga~e~l~~L~~~g~~~iflTN 48 (269)
T COG0647 8 YDGFLFDLD-----GVLYRGNEAIPGAAEALKRLKAAGKPVIFLTN 48 (269)
T ss_pred cCEEEEcCc-----CceEeCCccCchHHHHHHHHHHcCCeEEEEeC
Confidence 356677732 22223467899999999999999999887544
No 159
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=31.25 E-value=96 Score=27.15 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=28.9
Q ss_pred ceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeC
Q 020492 36 CDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 36 ~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~ 81 (325)
++.+.+|.+ +..--..+.||+..++++.|+++|+++.+-.+
T Consensus 8 ~~~~~~D~d-----G~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN 48 (242)
T TIGR01459 8 YDVFLLDLW-----GVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSN 48 (242)
T ss_pred CCEEEEecc-----cccccCCccCccHHHHHHHHHHCCCEEEEEeC
Confidence 467777742 12111245699999999999999999877544
No 160
>PLN02801 beta-amylase
Probab=31.18 E-value=1.3e+02 Score=29.76 Aligned_cols=86 Identities=17% Similarity=0.338 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEecccC--C--CceeeeecCCCCCChHHHHHHHHHCCCEEEee--eCC---cccc
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWMDIDYM--D--GFRCFTFDKERFPDPKSLAADLHLNGFKAIWM--LDP---GIKH 86 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~--~--~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~--~~P---~i~~ 86 (325)
..+.+.+.+-++.+++.|+ |.|.+|.-|- . +-+.|+ |..-+++++-+++.|+|+... ++- .|..
T Consensus 33 l~~~~~l~~~L~~LK~~GV--dGVmvDVWWGiVE~~~P~~Yd-----WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD 105 (517)
T PLN02801 33 LEDEEGLEKQLKRLKEAGV--DGVMVDVWWGIVESKGPKQYD-----WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGD 105 (517)
T ss_pred cCCHHHHHHHHHHHHHcCC--CEEEEeeeeeeeccCCCCccC-----cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCC
Confidence 3456778888888887775 9999997772 1 223333 345789999999999997544 331 1111
Q ss_pred CC----Cccccccc-cccceeeecCCC
Q 020492 87 ED----GYFVYDSG-SKIDVWIQKADG 108 (325)
Q Consensus 87 ~~----~~~~~~~~-~~~~~~~~~~~g 108 (325)
+- +..+.+.+ .+++++.++..|
T Consensus 106 ~~~IpLP~WV~~~g~~~pDi~ftDr~G 132 (517)
T PLN02801 106 AVNIPIPQWVRDVGDSDPDIFYTNRSG 132 (517)
T ss_pred cccccCCHHHHHhhccCCCceeecCCC
Confidence 10 11222322 445788888777
No 161
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=31.18 E-value=60 Score=30.68 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccc
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIK 85 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~ 85 (325)
+.++..+.++.+++.|+- .|..-..--.. -..+....++++++.+|+.|+++++-|+|.+-
T Consensus 12 ~~~~~~~yi~~a~~~Gf~--~iFTSL~ipe~-----~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFK--RIFTSLHIPED-----DPEDYLERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp -HHHHHHHHHHHHCTTEE--EEEEEE--------------HHHHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred CHHHHHHHHHHHHHCCCC--EEECCCCcCCC-----CHHHHHHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 467888999999988863 33222110000 01223445789999999999999999998653
No 162
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=31.07 E-value=1.8e+02 Score=25.90 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCC-CceeeeecCCCCCChHHHHHHHHHCCCEEEee-eCCcccc
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMD-GFRCFTFDKERFPDPKSLAADLHLNGFKAIWM-LDPGIKH 86 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~-~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~-~~P~i~~ 86 (325)
.+.+-+++++.+.+.|+|+-+-+.- .+.. ....-..-..+|-+.++|.+.|++++++.++- .+||-..
T Consensus 10 GT~egr~la~~L~~~g~~v~~Svat-~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~ 79 (248)
T PRK08057 10 GTSEARALARALAAAGVDIVLSLAG-RTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQ 79 (248)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHH
Confidence 4577889999999899886554433 2322 11111233467888899999999999999886 5698643
No 163
>PRK06769 hypothetical protein; Validated
Probab=31.01 E-value=61 Score=26.88 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.4
Q ss_pred CCCCChHHHHHHHHHCCCEEEee
Q 020492 57 ERFPDPKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 57 ~~FPd~~~~~~~L~~~G~k~~~~ 79 (325)
+.||+.+++++.|+++|+++++.
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~ 50 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSF 50 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEE
Confidence 35899999999999999998775
No 164
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=30.83 E-value=1.5e+02 Score=30.43 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=32.1
Q ss_pred CCCCChHHHHHHHHHHHhhhhCCccEEEecCCCCCcc
Q 020492 123 PDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVF 159 (325)
Q Consensus 123 ~Df~~p~a~~w~~~~~~~~~~~Gvdg~~~D~~e~~~~ 159 (325)
+|..+|-+|+-.-++-++-.+.|+||+-+|.++-..|
T Consensus 359 lnhq~P~VRAILLEmQRRK~n~GaDGIRVDGgQDFk~ 395 (811)
T PF14872_consen 359 LNHQNPVVRAILLEMQRRKINTGADGIRVDGGQDFKF 395 (811)
T ss_pred ccccChHHHHHHHHHHHhhcccCCceeEeccccccee
Confidence 8999999999999888877789999999999975543
No 165
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=30.83 E-value=82 Score=28.21 Aligned_cols=73 Identities=22% Similarity=0.268 Sum_probs=51.9
Q ss_pred chhhhhhcCCCCCHHHHHHHHHHHHhc-------CCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHH---CCCE
Q 020492 6 SLGYHQCRWSYDSDKRVREICRTFREK-------GIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHL---NGFK 75 (325)
Q Consensus 6 alG~~~s~~~y~~~~~v~~~~~~~~~~-------~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~---~G~k 75 (325)
.+||-.+.++-.+.++|++-|+++.+- ++.+|.|.+|.--. +....+=++.+.+.+|+ .+-.
T Consensus 70 vlGYV~T~Yg~R~~~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfDE~p~--------~~~~~~y~~~l~~~vk~~~~~~~~ 141 (253)
T PF12138_consen 70 VLGYVHTSYGSRPLSEVKADIDTYASWYGQSEDYGYRVDGIFFDEAPN--------DYANLPYYQNLYNYVKSAFGLGGD 141 (253)
T ss_pred EEEEEEccccCCCHHHHHHHHHHHhhccccccCCCcccceEEEecCCC--------cHHHHHHHHHHHHHHHhccccCCC
Confidence 578988999888899999999999986 58999999994221 11233345777888888 4333
Q ss_pred EEeeeCCcccc
Q 020492 76 AIWMLDPGIKH 86 (325)
Q Consensus 76 ~~~~~~P~i~~ 86 (325)
-.+..+|....
T Consensus 142 ~~VV~NPGt~~ 152 (253)
T PF12138_consen 142 GLVVLNPGTAV 152 (253)
T ss_pred CEEEeCCCCCC
Confidence 44556787743
No 166
>PLN02161 beta-amylase
Probab=30.59 E-value=1.4e+02 Score=29.64 Aligned_cols=87 Identities=11% Similarity=0.131 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEecccC--C--CceeeeecCCCCCChHHHHHHHHHCCCEEEee--eCC---cccc
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWMDIDYM--D--GFRCFTFDKERFPDPKSLAADLHLNGFKAIWM--LDP---GIKH 86 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~--~--~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~--~~P---~i~~ 86 (325)
..+...+.+-++.+++.| +|.|.+|.-|- . +-+.|+ |..-+++++-+++.|+|+... ++- .+..
T Consensus 113 v~~~~al~~~L~~LK~~G--VdGVmvDVWWGiVE~~~p~~Yd-----WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd 185 (531)
T PLN02161 113 IKRLKALTVSLKALKLAG--VHGIAVEVWWGIVERFSPLEFK-----WSLYEELFRLISEAGLKLHVALCFHSNMHLFGG 185 (531)
T ss_pred cCCHHHHHHHHHHHHHcC--CCEEEEEeeeeeeecCCCCcCC-----cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCC
Confidence 345667777777877766 59999997772 1 222333 345789999999999997554 331 1221
Q ss_pred CC----Cccccccc-cccceeeecCCCC
Q 020492 87 ED----GYFVYDSG-SKIDVWIQKADGT 109 (325)
Q Consensus 87 ~~----~~~~~~~~-~~~~~~~~~~~g~ 109 (325)
+- +..+.+.+ .+++++.+|..|.
T Consensus 186 ~~~IpLP~WV~~~g~~~pDi~ftDr~G~ 213 (531)
T PLN02161 186 KGGISLPLWIREIGDVNKDIYYRDKNGF 213 (531)
T ss_pred ccCccCCHHHHhhhccCCCceEEcCCCC
Confidence 11 11222322 4558888888773
No 167
>PLN02803 beta-amylase
Probab=30.58 E-value=1.3e+02 Score=29.92 Aligned_cols=87 Identities=11% Similarity=0.187 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEecccC--C--CceeeeecCCCCCChHHHHHHHHHCCCEEEee--eCC---cccc
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWMDIDYM--D--GFRCFTFDKERFPDPKSLAADLHLNGFKAIWM--LDP---GIKH 86 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~--~--~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~--~~P---~i~~ 86 (325)
..+.+.+.+-++.+++.|+ |.|.+|.-|- . +-+.|+ |..-+++++-+++.|+|+... ++- .|..
T Consensus 103 ~~~~~~l~~~L~~LK~~GV--dGVmvDVWWGiVE~~~p~~Yd-----WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD 175 (548)
T PLN02803 103 LNKPRAMNASLMALRSAGV--EGVMVDAWWGLVEKDGPMKYN-----WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGD 175 (548)
T ss_pred ccCHHHHHHHHHHHHHcCC--CEEEEEeeeeeeccCCCCcCC-----cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCC
Confidence 3456777888888887764 9999997772 1 223343 345789999999999997554 331 1111
Q ss_pred C----CCccccccc-cccceeeecCCCC
Q 020492 87 E----DGYFVYDSG-SKIDVWIQKADGT 109 (325)
Q Consensus 87 ~----~~~~~~~~~-~~~~~~~~~~~g~ 109 (325)
+ =+..+.+.+ .++++|.+|..|.
T Consensus 176 ~~~IpLP~WV~e~~~~~pDi~ftDr~G~ 203 (548)
T PLN02803 176 SCSIPLPPWVLEEMSKNPDLVYTDRSGR 203 (548)
T ss_pred cccccCCHHHHHhhhcCCCceEecCCCC
Confidence 1 011223322 4468888888773
No 168
>COG1878 Kynurenine formamidase [Amino acid transport and metabolism]
Probab=30.46 E-value=1.1e+02 Score=26.69 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCCh-HHHHHHHHHCCCEEEeeeCC
Q 020492 24 EICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDP-KSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 24 ~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~-~~~~~~L~~~G~k~~~~~~P 82 (325)
+.++.....+ |.+.+.+-.+|.+.+++-..=...||.+ ++.++.|.++|+|.+..=.+
T Consensus 96 ~~~~a~~~~~-~g~~v~i~Tgw~~~~~~~~~f~~~~Pg~~~eaa~~L~e~~VkaVGiDt~ 154 (218)
T COG1878 96 DDIEAWDAEH-PGDIVLIRTGWSKRWGDEPAFQYHFPGISIEAAEYLIERGVKAVGIDTP 154 (218)
T ss_pred HHhhhhcccC-CccEEEEEccchhhcCCcchhhccCcccCHHHHHHHHHcCCeEEEecCC
Confidence 3445554555 8899999999977655311004568887 79999999999997765333
No 169
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=30.10 E-value=1.9e+02 Score=20.19 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCCce---eeeecCCCCCChHHHHHHHHHCC
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDGFR---CFTFDKERFPDPKSLAADLHLNG 73 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~---~f~~d~~~FPd~~~~~~~L~~~G 73 (325)
-...++.--+|-.++|++++....-+....+ -...+.++++|...+++.|++++
T Consensus 17 p~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~~ 73 (73)
T cd03078 17 PECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPALLTSGTKISGPEKIIEYLRKQG 73 (73)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEEEECCEEecChHHHHHHHHHcC
Confidence 4566767777778999988765544543222 24556778999999999998764
No 170
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=29.86 E-value=59 Score=28.00 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=25.9
Q ss_pred ecCCCCCChHHHHHHHHHCCCEEEeeeCCcccc
Q 020492 54 FDKERFPDPKSLAADLHLNGFKAIWMLDPGIKH 86 (325)
Q Consensus 54 ~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~ 86 (325)
+--+..+++..+++.+++.|+|+++.++|....
T Consensus 86 ~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~ 118 (201)
T PF00834_consen 86 FHAEATEDPKETIKYIKEAGIKAGIALNPETPV 118 (201)
T ss_dssp EEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-G
T ss_pred EcccchhCHHHHHHHHHHhCCCEEEEEECCCCc
Confidence 344566789999999999999999999996544
No 171
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=29.58 E-value=2.1e+02 Score=23.64 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCC-hHHHHHHHHHCCCEEEeeeC
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd-~~~~~~~L~~~G~k~~~~~~ 81 (325)
....++..+.+++.|||+|+-+.- -+|-|+ ..++++..+++|.++++-+.
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~S-------------aHRtp~~~~~~~~~a~~~g~~viIa~A 61 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVS-------------AHRTPELMLEYAKEAEERGIKVIIAGA 61 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEC-------------cccCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345567777888999999888765 335555 57888999999998876543
No 172
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=29.45 E-value=1.6e+02 Score=26.26 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHCCCEEEeeeC
Q 020492 61 DPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~ 81 (325)
...+-++.+++.|+|+++.+-
T Consensus 60 ~~~~~i~~~~~~g~KVllSiG 80 (256)
T cd06546 60 TLWTELAILQSSGVKVMGMLG 80 (256)
T ss_pred HHHHHHHHHHhCCCEEEEEEC
Confidence 444556678889999998753
No 173
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=29.19 E-value=1.5e+02 Score=27.90 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=39.1
Q ss_pred CCCh-HHHHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHH-HH
Q 020492 59 FPDP-KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWW-GS 136 (325)
Q Consensus 59 FPd~-~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~-~~ 136 (325)
|-++ ++++..-|++|+|+++.. .. . .....+|+.|+-| .+
T Consensus 62 ~~~~~~~~~~~A~~~~v~v~~~~--------~~-~-----------------------------~~~l~~~~~R~~fi~s 103 (358)
T cd02875 62 FGDIDDELLCYAHSKGVRLVLKG--------DV-P-----------------------------LEQISNPTYRTQWIQQ 103 (358)
T ss_pred cCCCCHHHHHHHHHcCCEEEEEC--------cc-C-----------------------------HHHcCCHHHHHHHHHH
Confidence 4443 699999999999988531 00 0 0124578877654 44
Q ss_pred HHHhhhhCCccEEEecCCC
Q 020492 137 LVKDFIYNGVDGIWNDMNE 155 (325)
Q Consensus 137 ~~~~~~~~Gvdg~~~D~~e 155 (325)
.++-+.+.|+||+-+|+--
T Consensus 104 iv~~~~~~gfDGIdIDwE~ 122 (358)
T cd02875 104 KVELAKSQFMDGINIDIEQ 122 (358)
T ss_pred HHHHHHHhCCCeEEEcccC
Confidence 4555556899999999843
No 174
>PF11181 YflT: Heat induced stress protein YflT
Probab=28.93 E-value=70 Score=24.13 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEE
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWM 41 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~i 41 (325)
|.|++++.+.|+.+++.|+.-+-|.+
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy~~ddI~V 31 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGYSEDDIYV 31 (103)
T ss_pred ECCHHHHHHHHHHHHHcCCCcccEEE
Confidence 67899999999999999998777653
No 175
>PRK15063 isocitrate lyase; Provisional
Probab=28.45 E-value=1.5e+02 Score=28.66 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=24.4
Q ss_pred eeeecCCCCCC--hHHHHHHHHHCCCEEEeeeCC
Q 020492 51 CFTFDKERFPD--PKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 51 ~f~~d~~~FPd--~~~~~~~L~~~G~k~~~~~~P 82 (325)
.|+|.+. |.| ++.++++|.++|+++.++.-.
T Consensus 316 sfnW~~~-~~~~~~~~f~~eL~~~Gy~~~~~~la 348 (428)
T PRK15063 316 SFNWKKN-LDDATIAKFQRELGAMGYKFQFITLA 348 (428)
T ss_pred Ccccccc-cCHHHHHHHHHHHHHcCceEEEechH
Confidence 5778775 766 589999999999998887443
No 176
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=28.10 E-value=93 Score=26.34 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCceE-EEEecccCCCceeeeecCCCCC-ChHHHHHHHHHCCC-EEEeeeCCc
Q 020492 20 KRVREICRTFREKGIPCDV-IWMDIDYMDGFRCFTFDKERFP-DPKSLAADLHLNGF-KAIWMLDPG 83 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~-i~iD~~w~~~~~~f~~d~~~FP-d~~~~~~~L~~~G~-k~~~~~~P~ 83 (325)
+|...+++.++..+++.+. +++|...... +.... ..+.+++++++.|. ++++...+.
T Consensus 74 ~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~-------~~~~~~~~~~F~~~v~~~g~~~~~iY~~~~ 133 (192)
T cd06522 74 AEARYFANTAKSLGLSKNTVMVADMEDSSS-------SGNATANVNAFWQTMKAAGYKNTDVYTSAS 133 (192)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEeecCCC-------cchHHHHHHHHHHHHHHcCCCCcEEEccHH
Confidence 4455566676777776554 4567543211 11111 24799999999998 788887763
No 177
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.94 E-value=1.8e+02 Score=18.97 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEEe-cccCCCceeeeecCCCCCChHHHHHHHHHCCCEE
Q 020492 20 KRVREICRTFREKGIPCDVIWMD-IDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKA 76 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD-~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~ 76 (325)
-.+.++++.+.++++.+..+..- ... .+.....+.-+. .+...+.|+++|+++
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~~~~~~-~~~~~v~~~ve~---~~~~~~~L~~~G~~v 64 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYAFVEKK-GGKALLIFRTED---IEKAIEVLQERGVEL 64 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEEEccCC-CCeEEEEEEeCC---HHHHHHHHHHCCceE
Confidence 35677888899999998776541 111 123333333222 789999999999875
No 178
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=27.59 E-value=98 Score=26.84 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=13.4
Q ss_pred HHHhhhhCCccEEEecC
Q 020492 137 LVKDFIYNGVDGIWNDM 153 (325)
Q Consensus 137 ~~~~~~~~Gvdg~~~D~ 153 (325)
.++++.+.||||+-.|.
T Consensus 213 ~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 213 DMKRLKDLGVDGIITNY 229 (230)
T ss_pred HHHHHHHCCCCEEeCCC
Confidence 56677778999998874
No 179
>PLN00197 beta-amylase; Provisional
Probab=27.03 E-value=1.7e+02 Score=29.36 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEEecccC--C--CceeeeecCCCCCChHHHHHHHHHCCCEEEee--eCC---ccccC
Q 020492 17 DSDKRVREICRTFREKGIPCDVIWMDIDYM--D--GFRCFTFDKERFPDPKSLAADLHLNGFKAIWM--LDP---GIKHE 87 (325)
Q Consensus 17 ~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~--~--~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~--~~P---~i~~~ 87 (325)
.+.+.+.+-++.+++.|+ |.|.+|.-|- . +.+.|+ |...+++++-+++.|+|+... ++- .|..+
T Consensus 124 ~~~~~l~~~L~~LK~~GV--dGVmvDvWWGiVE~~~p~~Yd-----WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~ 196 (573)
T PLN00197 124 NRRKAMKASLQALKSAGV--EGIMMDVWWGLVERESPGVYN-----WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDS 196 (573)
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEEeeeeeeeccCCCCcCC-----cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCc
Confidence 355677888888887764 9999997772 1 223333 345789999999999997544 331 11111
Q ss_pred ----CCccccccc-cccceeeecCCCC
Q 020492 88 ----DGYFVYDSG-SKIDVWIQKADGT 109 (325)
Q Consensus 88 ----~~~~~~~~~-~~~~~~~~~~~g~ 109 (325)
=+..+.+.+ .++++|.+|..|.
T Consensus 197 ~~IpLP~WV~~~g~~dpDifftDr~G~ 223 (573)
T PLN00197 197 CTIPLPKWVVEEVDKDPDLAYTDQWGR 223 (573)
T ss_pred ccccCCHHHHHhhccCCCceeecCCCC
Confidence 011222322 4568888888773
No 180
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=27.00 E-value=1.5e+02 Score=27.07 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=38.8
Q ss_pred hHHHHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhh
Q 020492 62 PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 141 (325)
Q Consensus 62 ~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~ 141 (325)
...+++..|++|+|+++.|.=.-. + .++ ...+ .. =+.+|++|+-+.+.+.++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~---~--~~~-------------~~~~--------~~--~l~~~~~r~~fi~~iv~~ 98 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTN---G--NFD-------------SELA--------HA--VLSNPEARQRLINNILAL 98 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCC---C--CCC-------------HHHH--------HH--HhcCHHHHHHHHHHHHHH
Confidence 468999999999999976531100 0 010 0000 00 123677777655555554
Q ss_pred h-hCCccEEEecCC
Q 020492 142 I-YNGVDGIWNDMN 154 (325)
Q Consensus 142 ~-~~Gvdg~~~D~~ 154 (325)
+ +.|+||+-+|+-
T Consensus 99 l~~~~~DGidiDwE 112 (313)
T cd02874 99 AKKYGYDGVNIDFE 112 (313)
T ss_pred HHHhCCCcEEEecc
Confidence 4 589999999973
No 181
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=26.36 E-value=82 Score=26.03 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=19.9
Q ss_pred CCCChHHHHHHHHHCCCEEEeee
Q 020492 58 RFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 58 ~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
.||+..++++.|+++|+++++..
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~T 65 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFT 65 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEe
Confidence 36999999999999999988753
No 182
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=26.14 E-value=82 Score=26.03 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=19.7
Q ss_pred CCCChHHHHHHHHHCCCEEEee
Q 020492 58 RFPDPKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 58 ~FPd~~~~~~~L~~~G~k~~~~ 79 (325)
.||+..++++.|+++|+++++.
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~ 48 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLV 48 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEE
Confidence 4899999999999999998764
No 183
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=26.11 E-value=72 Score=29.21 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCCh-HHHHHHHHHCCCEEEeeeCCc
Q 020492 21 RVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDP-KSLAADLHLNGFKAIWMLDPG 83 (325)
Q Consensus 21 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~-~~~~~~L~~~G~k~~~~~~P~ 83 (325)
-|.++++-+++++ +|.|.||..+... =|++.|..+ +++.+.||+.|..+.+.+.|.
T Consensus 91 fi~~iv~~l~~~~--~DGidiDwE~~~~-----~d~~~~~~fl~~lr~~l~~~~~~lsv~~~p~ 147 (313)
T cd02874 91 LINNILALAKKYG--YDGVNIDFENVPP-----EDREAYTQFLRELSDRLHPAGYTLSTAVVPK 147 (313)
T ss_pred HHHHHHHHHHHhC--CCcEEEecccCCH-----HHHHHHHHHHHHHHHHhhhcCcEEEEEecCc
Confidence 3455566665665 5999888666321 022334443 666777777787766666654
No 184
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=25.92 E-value=1.8e+02 Score=25.62 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHh
Q 020492 61 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD 140 (325)
Q Consensus 61 d~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~ 140 (325)
++..+++.+|+.|+|+++.+.- ... ..+ .. =..+|+.|+-+.+.+-+
T Consensus 47 ~~~~~~~~~~~~~~kvl~sigg----~~~-~~~-------------------------~~---~~~~~~~r~~fi~~lv~ 93 (253)
T cd06545 47 ELNSVVNAAHAHNVKILISLAG----GSP-PEF-------------------------TA---ALNDPAKRKALVDKIIN 93 (253)
T ss_pred HHHHHHHHHHhCCCEEEEEEcC----CCC-Ccc-------------------------hh---hhcCHHHHHHHHHHHHH
Confidence 4578899999999999987541 110 000 00 12357777655555544
Q ss_pred -hhhCCccEEEecCCC
Q 020492 141 -FIYNGVDGIWNDMNE 155 (325)
Q Consensus 141 -~~~~Gvdg~~~D~~e 155 (325)
+.+.|+||+-+|.-.
T Consensus 94 ~~~~~~~DGIdiDwE~ 109 (253)
T cd06545 94 YVVSYNLDGIDVDLEG 109 (253)
T ss_pred HHHHhCCCceeEEeec
Confidence 446899999999843
No 185
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=25.64 E-value=2.2e+02 Score=19.89 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCC--ChHHHHHHHHHC
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP--DPKSLAADLHLN 72 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FP--d~~~~~~~L~~~ 72 (325)
..-+.++.+.+.+++|++|.+... ..--.|+.+...+. ...+++++|++-
T Consensus 15 ~g~~~~If~~la~~~I~vd~I~~s----~~~isftv~~~~~~~~~l~~l~~el~~~ 66 (73)
T cd04934 15 HGFLARIFAILDKYRLSVDLISTS----EVHVSMALHMENAEDTNLDAAVKDLQKL 66 (73)
T ss_pred cCHHHHHHHHHHHcCCcEEEEEeC----CCEEEEEEehhhcChHHHHHHHHHHHHh
Confidence 345667888889999999999752 23346788877775 357888888883
No 186
>PLN02905 beta-amylase
Probab=25.64 E-value=1.8e+02 Score=29.67 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEecccC--C--CceeeeecCCCCCChHHHHHHHHHCCCEEEee--eCC---cccc
Q 020492 16 YDSDKRVREICRTFREKGIPCDVIWMDIDYM--D--GFRCFTFDKERFPDPKSLAADLHLNGFKAIWM--LDP---GIKH 86 (325)
Q Consensus 16 y~~~~~v~~~~~~~~~~~iP~d~i~iD~~w~--~--~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~--~~P---~i~~ 86 (325)
..+...+.+-++.+++.| +|.|.+|.-|- . +-+.|+ |...+++++-+++.|+|+... ++- .|..
T Consensus 282 l~~~~al~a~L~aLK~aG--VdGVmvDVWWGiVE~~gP~~Yd-----WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD 354 (702)
T PLN02905 282 LADPDGLLKQLRILKSIN--VDGVKVDCWWGIVEAHAPQEYN-----WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGD 354 (702)
T ss_pred ccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeecCCCCcCC-----cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCC
Confidence 345677788888887766 49999997772 1 223333 345789999999999997544 331 1111
Q ss_pred C----CCccccccc-cccceeeecCCCC
Q 020492 87 E----DGYFVYDSG-SKIDVWIQKADGT 109 (325)
Q Consensus 87 ~----~~~~~~~~~-~~~~~~~~~~~g~ 109 (325)
+ =+..+.+.+ .++++|.++..|.
T Consensus 355 ~~~IPLP~WV~e~g~~nPDifftDrsG~ 382 (702)
T PLN02905 355 DVCIPLPHWVAEIGRSNPDIFFTDREGR 382 (702)
T ss_pred cccccCCHHHHHhhhcCCCceEecCCCC
Confidence 1 011233322 3568888888773
No 187
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=25.59 E-value=2e+02 Score=24.90 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeee
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 80 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~ 80 (325)
+...+.++++.+++.+.....|.+- ++ ++-..|+...+++.|+++|+++.+=.
T Consensus 54 ~~~~~~~I~~~i~~~~~~~~~V~lT----GG------EP~~~~~l~~Ll~~l~~~g~~~~lET 106 (212)
T COG0602 54 TPMSADEILADIKSLGYKARGVSLT----GG------EPLLQPNLLELLELLKRLGFRIALET 106 (212)
T ss_pred CccCHHHHHHHHHhcCCCcceEEEe----CC------cCCCcccHHHHHHHHHhCCceEEecC
Confidence 4456677788888776666666664 22 24456789999999999999987643
No 188
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=25.51 E-value=1.8e+02 Score=27.86 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCC
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P 82 (325)
++++.++.++..++.|| |+|.+|.+-... ++ -..++.+.+...+.|+|+.+.++-
T Consensus 15 t~~dw~~di~~A~~~GI--DgFaLNig~~d~---~~-----~~~l~~a~~AA~~~gFKlf~SfD~ 69 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGI--DGFALNIGSSDS---WQ-----PDQLADAYQAAEAVGFKLFFSFDM 69 (386)
T ss_pred CHHHHHHHHHHHHHcCC--CEEEEecccCCc---cc-----HHHHHHHHHHHHhcCCEEEEEecc
Confidence 68888888999989887 999999762111 11 123678888888899999988764
No 189
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=25.49 E-value=88 Score=25.74 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=19.9
Q ss_pred CCCCChHHHHHHHHHCCCEEEee
Q 020492 57 ERFPDPKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 57 ~~FPd~~~~~~~L~~~G~k~~~~ 79 (325)
.-||+..++++.|+++|+++++.
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~Iv 51 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMV 51 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEE
Confidence 35899999999999999997764
No 190
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=25.26 E-value=54 Score=28.64 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=23.4
Q ss_pred eecCCCCCChHHHHHHHHHCCCEEEeeeC
Q 020492 53 TFDKERFPDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 53 ~~d~~~FPd~~~~~~~L~~~G~k~~~~~~ 81 (325)
......||+..++++.|+++|+++.+..+
T Consensus 91 ~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn 119 (220)
T TIGR01691 91 ELTSHLYPDVPPALEAWLQLGLRLAVYSS 119 (220)
T ss_pred CcccCcCcCHHHHHHHHHHCCCEEEEEeC
Confidence 34456799999999999999999876543
No 191
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.25 E-value=1.2e+02 Score=26.78 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=13.5
Q ss_pred HHHhhhhCCccEEEecC
Q 020492 137 LVKDFIYNGVDGIWNDM 153 (325)
Q Consensus 137 ~~~~~~~~Gvdg~~~D~ 153 (325)
.++.+.+.||||+..|.
T Consensus 225 ~~~~l~~~gVdgIiTD~ 241 (249)
T cd08561 225 EMRRLLDLGVDGIITDR 241 (249)
T ss_pred HHHHHHhcCCCEEEcCC
Confidence 45667778999999885
No 192
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=24.92 E-value=60 Score=30.40 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCCh-HHHHHHHHHC--CCEEEeeeCC
Q 020492 22 VREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDP-KSLAADLHLN--GFKAIWMLDP 82 (325)
Q Consensus 22 v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~-~~~~~~L~~~--G~k~~~~~~P 82 (325)
|..+++-+++.+ +|.|.||..|-...+.-.-|++.|..+ +++.+.|++. ++.+.+.+.|
T Consensus 101 i~~iv~~l~~~~--~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~av~~ 162 (362)
T cd02872 101 IKSAIAFLRKYG--FDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAPRLLLTAAVSA 162 (362)
T ss_pred HHHHHHHHHHcC--CCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEEecC
Confidence 455666666666 599999866543221111123345443 6777777777 5554444443
No 193
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=24.92 E-value=89 Score=24.98 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.8
Q ss_pred CCCChHHHHHHHHHCCCEEEee
Q 020492 58 RFPDPKSLAADLHLNGFKAIWM 79 (325)
Q Consensus 58 ~FPd~~~~~~~L~~~G~k~~~~ 79 (325)
-||+..++++.|+++|+++++.
T Consensus 28 ~~~g~~~~l~~Lk~~g~~~~I~ 49 (147)
T TIGR01656 28 LRPGAVPALLTLRAAGYTVVVV 49 (147)
T ss_pred EcCChHHHHHHHHHCCCEEEEE
Confidence 4899999999999999998765
No 194
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=24.85 E-value=2e+02 Score=26.39 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHH
Q 020492 60 PDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK 139 (325)
Q Consensus 60 Pd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~ 139 (325)
-|+|=+...|.++|+|++..--|......+++- ..++|.|-+.|-...++
T Consensus 49 ~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~------------------------------~~~~n~er~~~~~~ll~ 98 (297)
T PF06342_consen 49 NDFKYIRPPLDEAGIRFIGINYPGFGFTPGYPD------------------------------QQYTNEERQNFVNALLD 98 (297)
T ss_pred cchhhhhhHHHHcCeEEEEeCCCCCCCCCCCcc------------------------------cccChHHHHHHHHHHHH
Confidence 367889999999999999988887766443110 35678887777777666
Q ss_pred hh
Q 020492 140 DF 141 (325)
Q Consensus 140 ~~ 141 (325)
++
T Consensus 99 ~l 100 (297)
T PF06342_consen 99 EL 100 (297)
T ss_pred Hc
Confidence 53
No 195
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=24.57 E-value=54 Score=26.89 Aligned_cols=72 Identities=22% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCCCcEEEEccccC--CCCcce-eeecCCCCCCchHHHHHHHHHHHccccCCCcccccCCCCCCCCCh-h
Q 020492 198 STYEGMKLADKDKRPFVLTRAGFI--GSQRYA-ATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATP-R 273 (325)
Q Consensus 198 ~~~e~~~~~~~~~r~~~~srs~~~--G~qr~~-~~w~GD~~s~W~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~-e 273 (325)
-||+.+++..+++|.+++=|+--. .+-.-. -.-.||. +..++. +..-=.+..+.+.|+|+- +.++ .
T Consensus 41 RTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi-------~~tl~~-~~~~g~~a~laHaD~G~g--~~~~d~ 110 (160)
T PF12692_consen 41 RTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDI-------RETLPA-LARFGAGAALAHADIGTG--DKEKDD 110 (160)
T ss_dssp HHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-H-------HHHHHH-HHHH-S-EEEEEE----S---HHHHH
T ss_pred ccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccH-------HHHhHH-HHhcCCceEEEEeecCCC--CcchhH
Confidence 378889999999999999997321 110001 1455654 455555 444445678899999963 3222 3
Q ss_pred HHHHHH
Q 020492 274 LFGRWM 279 (325)
Q Consensus 274 L~~RW~ 279 (325)
-..+|+
T Consensus 111 a~a~~l 116 (160)
T PF12692_consen 111 ATAAWL 116 (160)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 455676
No 196
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=24.47 E-value=84 Score=28.68 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=24.2
Q ss_pred eeecCCCCCCchHHHHHHHHHHHccccCCCcccc
Q 020492 228 ATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGP 261 (325)
Q Consensus 228 ~~w~GD~~s~W~~L~~~i~~~l~~~l~G~~~~g~ 261 (325)
.+|--|.. .|+..+..+...++.|+.+|..
T Consensus 261 ~Vw~~d~~----Sl~~K~~~a~~~~l~Gva~W~l 290 (298)
T cd06549 261 EVWMLDAV----TLFNQLKAVQRLGPAGVALWRL 290 (298)
T ss_pred EEEeccHH----HHHHHHHHHHHcCCCcEEEEec
Confidence 36766665 4888888889999999999984
No 197
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=24.36 E-value=1.4e+02 Score=26.27 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCC----------Cceeeeec------------CCCCCChHHHHHHHHHCCCEEE
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMD----------GFRCFTFD------------KERFPDPKSLAADLHLNGFKAI 77 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~----------~~~~f~~d------------~~~FPd~~~~~~~L~~~G~k~~ 77 (325)
+++...++.+...+=..+++++|.+=.. .++.-.+| ....|...++++.|+++|++++
T Consensus 61 ~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf 140 (229)
T TIGR01675 61 DEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIF 140 (229)
T ss_pred HHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEE
Confidence 3344444444444446789999976320 11211122 1233445789999999999977
Q ss_pred ee
Q 020492 78 WM 79 (325)
Q Consensus 78 ~~ 79 (325)
+.
T Consensus 141 ~l 142 (229)
T TIGR01675 141 LL 142 (229)
T ss_pred EE
Confidence 65
No 198
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=24.18 E-value=1.6e+02 Score=27.46 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEEe
Q 020492 20 KRVREICRTFREKGIPCDVIWMD 42 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD 42 (325)
..|+++|+.+++.|.|+|.|-+.
T Consensus 204 ~~~~nlI~~LkekG~pIDgiG~Q 226 (345)
T COG3693 204 NYVLNLIEELKEKGAPIDGIGIQ 226 (345)
T ss_pred HHHHHHHHHHHHCCCCccceeee
Confidence 45566666666666666666554
No 199
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=24.05 E-value=1.3e+02 Score=27.57 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=13.5
Q ss_pred HHHhhhhCCccEEEecC
Q 020492 137 LVKDFIYNGVDGIWNDM 153 (325)
Q Consensus 137 ~~~~~~~~Gvdg~~~D~ 153 (325)
.++++.++||||+-.|.
T Consensus 274 ~~~~l~~~GVdgIiTD~ 290 (300)
T cd08612 274 EFERAFELGADGVMTDY 290 (300)
T ss_pred HHHHHHhcCCCEEEeCC
Confidence 46677788999998884
No 200
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=23.81 E-value=96 Score=32.39 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCEEEeeeCCccccCCCccccccccccceeeecCC-CCc-----eeeeecCCCccCCCCCChHHHHHHHHH
Q 020492 64 SLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKAD-GTP-----FIGEVWPGPCVFPDYTQSKVRSWWGSL 137 (325)
Q Consensus 64 ~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~-g~~-----~~~~~w~g~~~~~Df~~p~a~~w~~~~ 137 (325)
+..+..+++|++++.-+.-+|..++. .+. ..+++|..+.. |.| ..|+.|.-+..-.+--..+--+||.+.
T Consensus 278 ~~~~yA~~~GI~L~GDLPIgVa~dSa-DvW---a~p~lF~ld~~aGAPPD~FS~~GQnWG~P~YnW~~l~~dgY~WWr~R 353 (745)
T PLN03236 278 RAAAHAAAKGVILKGDLPIGVDKASV-DTW---MHPKLFRMDTSTGAPPDAFDANGQNWGFPTYDWEEMAEDDYAWWRAR 353 (745)
T ss_pred HHHHHHHHCCCEEEEEeeceeCCCcH-HHh---cCHHHhcCCCCcCCCCCCCCcccCcCCCCCcCHHHHHhcCcHHHHHH
Confidence 44555778899877666666665541 111 23333332211 211 236667555432222223345899999
Q ss_pred HHhhh
Q 020492 138 VKDFI 142 (325)
Q Consensus 138 ~~~~~ 142 (325)
++...
T Consensus 354 lr~~~ 358 (745)
T PLN03236 354 MQHLE 358 (745)
T ss_pred HHHHH
Confidence 98754
No 201
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=23.66 E-value=1e+02 Score=26.20 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCc-eEEEEecccCCCceeeeecCCCC-CChHHHHHHHHHCCCEEEeeeCCc
Q 020492 22 VREICRTFREKGIPC-DVIWMDIDYMDGFRCFTFDKERF-PDPKSLAADLHLNGFKAIWMLDPG 83 (325)
Q Consensus 22 v~~~~~~~~~~~iP~-d~i~iD~~w~~~~~~f~~d~~~F-Pd~~~~~~~L~~~G~k~~~~~~P~ 83 (325)
.+-+++..+..++|. ..+++|....... +++.- ...+.++++|++.|++++++..+.
T Consensus 73 A~~f~~~~~~~~l~~~~~~~lDvE~~~~~-----~~~~~~~~~~~f~~~v~~~G~~~~iYt~~~ 131 (196)
T cd06415 73 ADYFLNSAQQAGLPKGSYLALDYEQGSGN-----SKAANTSAILAFMDTIKDAGYKPMLYSYKP 131 (196)
T ss_pred HHHHHHHhhhcCCCCCCEEEEEEecCCCC-----CHHHHHHHHHHHHHHHHHhCCCcEEEecHH
Confidence 333666667667754 5577886643211 11111 124788999999999998887653
No 202
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=23.28 E-value=2.6e+02 Score=26.06 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHh-cCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccC
Q 020492 19 DKRVREICRTFRE-KGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHE 87 (325)
Q Consensus 19 ~~~v~~~~~~~~~-~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~ 87 (325)
.+++++.++.+++ .|+|.+-+. ..||++.+.-.|= =|+-.+.++.|.++|+|-++.+.|.+..+
T Consensus 206 ~~q~~~t~~li~e~lg~~~~~~~--~~~QS~~G~~~WL---~P~t~~~l~~L~~~g~k~iiv~pigFvsD 270 (320)
T COG0276 206 PQQCQETTRLIAEALGLPEEEYD--LTFQSRFGPEPWL---QPYTDDLLEELGEKGVKKIIVVPIGFVSD 270 (320)
T ss_pred HHHHHHHHHHHHHHcCCCchhee--EEeecCCCCCCCC---CCCHHHHHHHHHhcCCCeEEEECCchhhh
Confidence 4666676666654 565444332 3566543322221 26779999999999999888888865543
No 203
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.15 E-value=71 Score=26.77 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=19.3
Q ss_pred hHHHHHHHHHC-CCEEEeeeCCcc
Q 020492 62 PKSLAADLHLN-GFKAIWMLDPGI 84 (325)
Q Consensus 62 ~~~~~~~L~~~-G~k~~~~~~P~i 84 (325)
...+++.|++. |.+++++..+..
T Consensus 105 ~~~f~~~v~~~~G~~~~iY~~~~~ 128 (184)
T cd06525 105 VLRFIEEFEKLSGLKVGIYTYTSF 128 (184)
T ss_pred HHHHHHHHHHHHCCCeEEEecHHH
Confidence 47899999998 999999887743
No 204
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=22.90 E-value=1.3e+02 Score=27.84 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=35.4
Q ss_pred HHHHHHHHHHH-HhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHC-CCEEEee
Q 020492 19 DKRVREICRTF-REKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN-GFKAIWM 79 (325)
Q Consensus 19 ~~~v~~~~~~~-~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~-G~k~~~~ 79 (325)
..-++.++.+. ...++|+.++++|.+| .||..-++.+++.+. |+.+++.
T Consensus 50 S~VlLhLa~kaf~~~~~~~pvl~VDTG~------------~FpEt~efrD~~a~~~gl~Liv~ 100 (312)
T PRK12563 50 SVVMLHLAMKAFRPTRPPFPLLHVDTTW------------KFREMIDFRDRRAKELGLDLVVH 100 (312)
T ss_pred HHHHHHHHHHhhcccCCCeeEEEeCCCC------------CCHHHHHHHHHHHHHhCCcEEEe
Confidence 34456666554 2347889999999776 589888888888775 8876654
No 205
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=22.87 E-value=2.5e+02 Score=23.81 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHC---CCEEEeee
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN---GFKAIWML 80 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~---G~k~~~~~ 80 (325)
+.|.+.+.+.+..|.++..|.||.|.. +.+-++...+.+.|+++ ++++.+.-
T Consensus 27 ~~i~~~l~~W~~~G~~v~giQIDfDa~---------t~~L~~Y~~fL~~LR~~LP~~~~LSIT~ 81 (181)
T PF11340_consen 27 ARILQLLQRWQAAGNNVAGIQIDFDAA---------TSRLPAYAQFLQQLRQRLPPDYRLSITA 81 (181)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecCcc---------ccchHHHHHHHHHHHHhCCCCceEeeEE
Confidence 455666667778999999999997764 34667778999999986 66665543
No 206
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=22.80 E-value=2.1e+02 Score=26.54 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHh-cCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccC
Q 020492 20 KRVREICRTFRE-KGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHE 87 (325)
Q Consensus 20 ~~v~~~~~~~~~-~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~ 87 (325)
+++.+.++.+.+ .+++- ....||+..+.=.|= =|+.++.+++|+++|+|-++.+.|.+..+
T Consensus 207 ~~~~~t~~~i~~~l~~~~----~~~~fQS~~g~~~WL---~P~~~~~l~~l~~~G~~~V~v~p~gFv~D 268 (316)
T PF00762_consen 207 AQCEETARLIAERLGLPE----WRLAFQSRFGPGEWL---GPSTEDVLEELAKEGVKRVVVVPPGFVSD 268 (316)
T ss_dssp HHHHHHHHHHHHHTTTSS----EEEEEES-SSSS-BS---SSBHHHHHHHHHHCT-SEEEEEETT-SSS
T ss_pred HHHHHHHHHHHHHcCCCc----eEEEEECCCCCCCCc---cccHHHHHHHHHhcCCCeEEEECCccccc
Confidence 455555555543 45543 234566554432331 27789999999999999888888865543
No 207
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.71 E-value=3.9e+02 Score=22.89 Aligned_cols=50 Identities=10% Similarity=-0.004 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCC
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 82 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P 82 (325)
+.++..+.++++.+.+ +|+|++..- .-......+++++++|++++..-.+
T Consensus 40 d~~~q~~~i~~~i~~~--~d~Iiv~~~-------------~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 40 DPEEQIEQIEQAISQG--VDGIIVSPV-------------DPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp THHHHHHHHHHHHHTT--ESEEEEESS-------------STTTTHHHHHHHHHTTSEEEEESST
T ss_pred CHHHHHHHHHHHHHhc--CCEEEecCC-------------CHHHHHHHHHHHhhcCceEEEEecc
Confidence 4556667777777777 577776521 1234578999999999988876555
No 208
>PRK08005 epimerase; Validated
Probab=22.58 E-value=2.4e+02 Score=24.50 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=38.6
Q ss_pred HHHHHHh-cCCCceEEEEe--c-ccC-----CCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCcccc
Q 020492 25 ICRTFRE-KGIPCDVIWMD--I-DYM-----DGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKH 86 (325)
Q Consensus 25 ~~~~~~~-~~iP~d~i~iD--~-~w~-----~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~ 86 (325)
+++.+|+ -.+|+|+..+= + .|. .+-...++.-+.=+++..+++.+|+.|+|.++.++|....
T Consensus 49 ~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~ 119 (210)
T PRK08005 49 TIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPL 119 (210)
T ss_pred HHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCH
Confidence 3444443 36788876532 1 121 1112234444444678999999999999999999997433
No 209
>PLN02814 beta-glucosidase
Probab=22.37 E-value=2.2e+02 Score=28.33 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCC--ceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCcccccccc
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDG--FRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 97 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 97 (325)
...++-++.+++.|+. +.=+...|..= .+.=.+|++-.-=-+.+|+.|.++|++.++.+.=+-. +..+
T Consensus 77 hry~EDI~L~k~lG~~--ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl---P~~L----- 146 (504)
T PLN02814 77 HKYKEDVKLMAEMGLE--SFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL---PQSL----- 146 (504)
T ss_pred HhhHHHHHHHHHcCCC--EEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC---CHHH-----
Confidence 3467778888888874 44444556320 0100111111101268999999999998876542211 1001
Q ss_pred ccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-C--CccEEEecCCCCCcc
Q 020492 98 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-N--GVDGIWNDMNEPAVF 159 (325)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~--Gvdg~~~D~~e~~~~ 159 (325)
.+.-| -|.|+++.++|.+..+.+++ . -|+ .|+=+|||..+
T Consensus 147 ------~~~yG---------------GW~n~~~i~~F~~YA~~~f~~fgdrVk-~WiT~NEP~~~ 189 (504)
T PLN02814 147 ------EDEYG---------------GWINRKIIEDFTAFADVCFREFGEDVK-LWTTINEATIF 189 (504)
T ss_pred ------HHhcC---------------CcCChhHHHHHHHHHHHHHHHhCCcCC-EEEeccccchh
Confidence 11101 35788999998888877665 3 366 56779999765
No 210
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=22.20 E-value=2.8e+02 Score=27.25 Aligned_cols=107 Identities=15% Similarity=0.076 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCCceEEEEecccCCC--ceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCccccccccc
Q 020492 21 RVREICRTFREKGIPCDVIWMDIDYMDG--FRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSK 98 (325)
Q Consensus 21 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~~ 98 (325)
..++.++.+++.|+ .+.=+...|..= .++=.+|++-.-=-..+|+.|+++|++.++.+.-+-. +..+
T Consensus 55 ry~eDi~L~~~lG~--~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl---P~~L------ 123 (469)
T PRK13511 55 RYPEDLKLAEEFGV--NGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDT---PEAL------ 123 (469)
T ss_pred hhHHHHHHHHHhCC--CEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC---cHHH------
Confidence 45677778877776 444444556320 0100111111111268999999999998876553211 1011
Q ss_pred cceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-C-CccEEEecCCCCCccC
Q 020492 99 IDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-N-GVDGIWNDMNEPAVFK 160 (325)
Q Consensus 99 ~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~-Gvdg~~~D~~e~~~~~ 160 (325)
.+. | -|.|+++.+++.+.-+.+++ . +|+ .|+=+|||..+.
T Consensus 124 -----~~~-G---------------GW~n~~~v~~F~~YA~~~~~~fgdVk-~W~T~NEP~~~~ 165 (469)
T PRK13511 124 -----HSN-G---------------DWLNRENIDHFVRYAEFCFEEFPEVK-YWTTFNEIGPIG 165 (469)
T ss_pred -----HHc-C---------------CCCCHHHHHHHHHHHHHHHHHhCCCC-EEEEccchhhhh
Confidence 111 1 45789999998888776664 1 266 668899997654
No 211
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=22.09 E-value=78 Score=29.11 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCceEEEEe-cccCCCceeeeecCCCCCC-hHHHHHHHHHCCCEEEeeeCCcc
Q 020492 22 VREICRTFREKGIPCDVIWMD-IDYMDGFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGI 84 (325)
Q Consensus 22 v~~~~~~~~~~~iP~d~i~iD-~~w~~~~~~f~~d~~~FPd-~~~~~~~L~~~G~k~~~~~~P~i 84 (325)
|..+++-+++.+ +|.|-|| ..+-...+. .-|++.|-. ++++.+.||+.|..+.+.+.|..
T Consensus 97 i~s~~~~~~~~~--~DGidiD~we~p~~~~~-~~d~~~~~~~l~el~~~l~~~~~~l~~~v~~~~ 158 (318)
T cd02876 97 IKLLVTTAKKNH--FDGIVLEVWSQLAAYGV-PDKRKELIQLVIHLGETLHSANLKLILVIPPPR 158 (318)
T ss_pred HHHHHHHHHHcC--CCcEEEechhhhcccCC-HHHHHHHHHHHHHHHHHHhhcCCEEEEEEcCcc
Confidence 344555555665 6888887 333221110 001222322 36677777888888888777654
No 212
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=21.97 E-value=38 Score=31.21 Aligned_cols=12 Identities=50% Similarity=0.825 Sum_probs=10.1
Q ss_pred CcccccCCCCCC
Q 020492 257 PFSGPDIGGFDG 268 (325)
Q Consensus 257 ~~~g~DigGf~~ 268 (325)
+++|+|||||..
T Consensus 131 iMfGPDICG~~t 142 (406)
T KOG0674|consen 131 IMFGPDICGFGT 142 (406)
T ss_pred cccCCcccCCCC
Confidence 679999999953
No 213
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=21.85 E-value=1.2e+02 Score=27.86 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=18.7
Q ss_pred CChHHHHHHHHHCCCEEEeeeC
Q 020492 60 PDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 60 Pd~~~~~~~L~~~G~k~~~~~~ 81 (325)
|+..++++.|+++|++++++..
T Consensus 149 PgV~EaL~~LkekGikLaIaTS 170 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSY 170 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 4567999999999999988864
No 214
>PRK15447 putative protease; Provisional
Probab=21.73 E-value=1.8e+02 Score=26.71 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCcc
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGI 84 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i 84 (325)
..++++...+.+.| .|+|.+...-.+....|+ ..++++.++.+|+.|.|+.+. .|.|
T Consensus 15 ~~~~~~~~~~~~~g--aDaVY~g~~~~~~R~~f~-----~~~l~e~v~~~~~~gkkvyva-~p~i 71 (301)
T PRK15447 15 ETVRDFYQRAADSP--VDIVYLGETVCSKRRELK-----VGDWLELAERLAAAGKEVVLS-TLAL 71 (301)
T ss_pred CCHHHHHHHHHcCC--CCEEEECCccCCCccCCC-----HHHHHHHHHHHHHcCCEEEEE-eccc
Confidence 44677777777777 699998854433332232 236799999999999997764 4554
No 215
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=21.64 E-value=2.2e+02 Score=27.37 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCcc
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGI 84 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i 84 (325)
+-+.|.+-++.++++|+++.+.. ++.+.....++++++.+++.|++.+ .+.|.+
T Consensus 151 sf~~v~~~i~~l~~~gi~~~i~~------------vv~~~n~~~~~e~~~~~~~lg~~~~-~~~p~~ 204 (412)
T PRK13745 151 SFVKVMKGINLLKKHGVEWNAMA------------VVNDFNADYPLDFYHFFKELDCHYI-QFAPIV 204 (412)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEE------------EEcCCccccHHHHHHHHHHcCCCeE-EEEecc
Confidence 55778888888889998866542 3334456678899999999999854 334443
No 216
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=21.63 E-value=3.7e+02 Score=20.52 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHC-CCEEEee
Q 020492 19 DKRVREICRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN-GFKAIWM 79 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~-G~k~~~~ 79 (325)
...+...++.+.+.++ |+|++-.--..+. ....=|..+.+.+.|+++ |++++..
T Consensus 51 g~~~~~~~~~l~~~~~--d~IHlssC~~~~~-----~~~~CP~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGA--DVIHLSSCMVKGN-----PHGPCPHIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred hhHHHHHHHHHHHCCC--CEEEEcCCEecCC-----CCCCCCCHHHHHHHHHHHhCCCEeee
Confidence 4567888899988885 6888764332211 111568889999999999 9988764
No 217
>PLN02998 beta-glucosidase
Probab=21.56 E-value=2e+02 Score=28.51 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCC--ceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCccccCCCcccccccc
Q 020492 20 KRVREICRTFREKGIPCDVIWMDIDYMDG--FRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 97 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 97 (325)
...++.++.+++.|+.. .=+-..|..= .+.=.+|++-.-=-..+|+.|.++|++.++.+.-+-. +..+.
T Consensus 82 hry~EDi~lmk~lG~~~--YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dl---P~~L~---- 152 (497)
T PLN02998 82 HKYKEDVKLMADMGLEA--YRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDL---PQALE---- 152 (497)
T ss_pred HhhHHHHHHHHHcCCCe--EEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCC---CHHHH----
Confidence 34577788888888744 4444456310 0100111111111268999999999998876553211 10110
Q ss_pred ccceeeecCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHhhhh-CC--ccEEEecCCCCCccC
Q 020492 98 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NG--VDGIWNDMNEPAVFK 160 (325)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~w~g~~~~~Df~~p~a~~w~~~~~~~~~~-~G--vdg~~~D~~e~~~~~ 160 (325)
+.-| -|.|+++.+++.+..+.+++ .| |+ .|+=+|||..+.
T Consensus 153 -------~~yG---------------GW~n~~~v~~F~~YA~~~~~~fgdrVk-~WiT~NEP~~~~ 195 (497)
T PLN02998 153 -------DEYG---------------GWLSQEIVRDFTAYADTCFKEFGDRVS-HWTTINEVNVFA 195 (497)
T ss_pred -------HhhC---------------CcCCchHHHHHHHHHHHHHHHhcCcCC-EEEEccCcchhh
Confidence 1001 35678888998888877665 33 55 678899998654
No 218
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=21.46 E-value=1.2e+02 Score=27.89 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCCceEEEEecccCCCc--eeeeecCCCCCChHHHHHHHHHCCCEEEeeeC
Q 020492 22 VREICRTFREKGIPCDVIWMDIDYMDGF--RCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 22 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~ 81 (325)
+.+.++.+.+.| .+.|.+++.|.... +.=.|.+--.|-.+++++.+|+.|.++++.++
T Consensus 170 ~~~~~~~~~~~G--~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~c 229 (330)
T cd03465 170 IIRYADALIEAG--ADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNC 229 (330)
T ss_pred HHHHHHHHHHhC--CCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEEC
Confidence 444555555555 58899888774321 11012222345569999999999887777655
No 219
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=21.34 E-value=1.8e+02 Score=26.09 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=27.8
Q ss_pred eEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeC
Q 020492 37 DVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 37 d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~ 81 (325)
+.+.+|.+ |.+--..+.+|...+.++.|+++|+++++..+
T Consensus 3 ~~~~~D~D-----Gtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tn 42 (279)
T TIGR01452 3 QGFIFDCD-----GVLWLGERVVPGAPELLDRLARAGKAALFVTN 42 (279)
T ss_pred cEEEEeCC-----CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeC
Confidence 56666643 22222355788989999999999999876543
No 220
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=21.32 E-value=93 Score=26.26 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=18.6
Q ss_pred hHHHHHHHHHCCCEEEeeeCCc
Q 020492 62 PKSLAADLHLNGFKAIWMLDPG 83 (325)
Q Consensus 62 ~~~~~~~L~~~G~k~~~~~~P~ 83 (325)
.+.+++.|++.|.+++++..+.
T Consensus 115 ~~~f~~~v~~~G~~~~iY~~~~ 136 (191)
T cd06414 115 ANAFCETIEAAGYYPGIYANLS 136 (191)
T ss_pred HHHHHHHHHHcCCCeEEEecHH
Confidence 4788999999999999987764
No 221
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.18 E-value=1.6e+02 Score=26.22 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=13.3
Q ss_pred HHHhhhhCCccEEEecC
Q 020492 137 LVKDFIYNGVDGIWNDM 153 (325)
Q Consensus 137 ~~~~~~~~Gvdg~~~D~ 153 (325)
.++++.+.||||+-.|.
T Consensus 240 ~~~~l~~~GvdgiiTD~ 256 (265)
T cd08564 240 DYKVYLELGVDCICPND 256 (265)
T ss_pred HHHHHHHcCCCEEEcCC
Confidence 45666778999998885
No 222
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=21.16 E-value=1.7e+02 Score=24.71 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=30.5
Q ss_pred HHHHHhcCCCceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHC-CCEEEee
Q 020492 26 CRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN-GFKAIWM 79 (325)
Q Consensus 26 ~~~~~~~~iP~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~-G~k~~~~ 79 (325)
++.+++...++.++++|.++ .||+.-++++++.++ |+.++..
T Consensus 9 l~L~~~~~~~~~vifvDTg~------------~FpET~~~~d~~~~~~~l~i~~~ 51 (191)
T TIGR02055 9 VDLAAKVRPDVKVFFLDTGR------------LFKETYETIDQVRERYDILIDVL 51 (191)
T ss_pred HHHHHhcCCCCcEEEecCCC------------CCHHHHHHHHHHHHHhCCceEEE
Confidence 34444555668889999776 488888888888886 7766554
No 223
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=21.12 E-value=1.1e+02 Score=26.49 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCC-ceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCcc
Q 020492 19 DKRVREICRTFREKGIP-CDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGI 84 (325)
Q Consensus 19 ~~~v~~~~~~~~~~~iP-~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~i 84 (325)
..+..+.++..+++|+| -..|.+|.+.-... -+++..--|=++.+.+.|+..|++++++-+..+
T Consensus 88 ~~dA~~A~~~A~~lG~p~gs~IYfavD~d~~~--~~~~~~v~~Y~~a~~~~l~~~gY~~GiYg~~~~ 152 (212)
T cd06418 88 VKDARDAVAAARALGFPPGTIIYFAVDFDALD--DEVTEVILPYFRGWNDALHEAGYRIGIYGSRNV 152 (212)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEeecCCCc--chhHHHHHHHHHHHHHHHHhcCCceeEEcChHH
Confidence 46677888889999999 55666665542211 112222223358999999999999998866543
No 224
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=20.94 E-value=1.6e+02 Score=25.24 Aligned_cols=28 Identities=43% Similarity=0.567 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEeccc
Q 020492 18 SDKRVREICRTFREKGIPCDVIWMDIDY 45 (325)
Q Consensus 18 ~~~~v~~~~~~~~~~~iP~d~i~iD~~w 45 (325)
-.+.+...-+.+++.|||+|+|..|.+.
T Consensus 28 y~~~~~~~y~al~~~gi~vDvv~~~~dL 55 (207)
T PF08532_consen 28 YRDQVRGWYRALRELGIPVDVVSPDDDL 55 (207)
T ss_dssp HHHHHHHHHHHHHTTT--EEEE-TTS--
T ss_pred HHHHHHHHHHHHHHcCCceEEecCcCCc
Confidence 3577888889999999999999877543
No 225
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=20.81 E-value=2.5e+02 Score=24.32 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCC-ceEEEEecccCCCceeeeecCCCCCChHHHHHHHHHCCCEEEeeeCCc
Q 020492 20 KRVREICRTFREKGIP-CDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPG 83 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP-~d~i~iD~~w~~~~~~f~~d~~~FPd~~~~~~~L~~~G~k~~~~~~P~ 83 (325)
+.+.+.++.+....++ -+++++-++|..+ .-+...+.+++|++++.++ +|++|.
T Consensus 134 ~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~---------~~~~~~~~l~~l~~r~~rv-iwLnP~ 188 (222)
T PF05762_consen 134 QALREFLRQYARPDLRRTTVVIISDGWDTN---------DPEPLAEELRRLRRRGRRV-IWLNPL 188 (222)
T ss_pred HHHHHHHHHhhcccccCcEEEEEecccccC---------ChHHHHHHHHHHHHhCCEE-EEECCc
Confidence 4445555555544432 3566777676432 2233578899999999875 566774
No 226
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=20.53 E-value=91 Score=29.78 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=22.4
Q ss_pred ecCCCCCChHHHHHHHHHCCCEEEeeeC
Q 020492 54 FDKERFPDPKSLAADLHLNGFKAIWMLD 81 (325)
Q Consensus 54 ~d~~~FPd~~~~~~~L~~~G~k~~~~~~ 81 (325)
|++++| |++++++.+++.|+|+++.++
T Consensus 76 F~p~~f-D~~~Wa~~~k~AGakY~vlTa 102 (384)
T smart00812 76 FTAEKF-DPEEWADLFKKAGAKYVVLTA 102 (384)
T ss_pred CCchhC-CHHHHHHHHHHcCCCeEEeee
Confidence 556666 899999999999999887544
No 227
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=20.26 E-value=1.3e+02 Score=25.92 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=37.2
Q ss_pred ChhHHHHHHHhhcccccccccCCCCCCCCCccccChhhHHHHHHHHHHh
Q 020492 271 TPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 319 (325)
Q Consensus 271 ~~eL~~RW~q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~~~ 319 (325)
.-|+|.+|+-.|.++-++-+.-..-..+-.||.++..-.+++..+++-|
T Consensus 162 el~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~ 210 (237)
T COG3510 162 ELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREF 210 (237)
T ss_pred HHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhC
Confidence 4588999999999998876554332235789999888888888887765
No 228
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.16 E-value=2.9e+02 Score=24.30 Aligned_cols=60 Identities=18% Similarity=-0.004 Sum_probs=38.1
Q ss_pred HHHHHhcCCCceEEEEe--c-ccC-----CCceeeeecCCCCCChHHHHHHHHHCCC--EEEeeeCCcccc
Q 020492 26 CRTFREKGIPCDVIWMD--I-DYM-----DGFRCFTFDKERFPDPKSLAADLHLNGF--KAIWMLDPGIKH 86 (325)
Q Consensus 26 ~~~~~~~~iP~d~i~iD--~-~w~-----~~~~~f~~d~~~FPd~~~~~~~L~~~G~--k~~~~~~P~i~~ 86 (325)
++.++ ..+|+|+..+= + .|. .+-...++--|.=+++..+++.+|+.|+ |.++.++|....
T Consensus 62 i~~i~-~~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~ 131 (228)
T PRK08091 62 IKQFP-THCFKDVHLMVRDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPI 131 (228)
T ss_pred HHHhC-CCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCH
Confidence 34444 36787776531 1 121 1222334444445788999999999999 999999997544
No 229
>PRK11440 putative hydrolase; Provisional
Probab=20.08 E-value=3.2e+02 Score=22.77 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhcCCCceE
Q 020492 20 KRVREICRTFREKGIPCDV 38 (325)
Q Consensus 20 ~~v~~~~~~~~~~~iP~d~ 38 (325)
..+..+++.+|++|+|+=.
T Consensus 35 ~~i~~l~~~ar~~g~pVi~ 53 (188)
T PRK11440 35 ARAARLAAKFRASGSPVVL 53 (188)
T ss_pred HHHHHHHHHHHHcCCcEEE
Confidence 5678889999999999643
Done!