Query 020493
Match_columns 325
No_of_seqs 186 out of 527
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 02:50:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 1.4E-57 3E-62 411.6 0.5 137 146-314 79-215 (215)
2 PF00564 PB1: PB1 domain; Int 97.1 0.0013 2.8E-08 50.5 5.7 68 202-298 3-71 (84)
3 cd06398 PB1_Joka2 The PB1 doma 96.9 0.0032 6.9E-08 51.5 7.0 68 202-298 2-72 (91)
4 cd06407 PB1_NLP A PB1 domain i 96.8 0.0045 9.7E-08 49.6 6.7 57 202-287 2-58 (82)
5 smart00666 PB1 PB1 domain. Pho 96.5 0.014 3.1E-07 44.7 7.5 65 203-297 4-69 (81)
6 cd05992 PB1 The PB1 domain is 96.5 0.015 3.2E-07 44.2 7.5 66 202-297 2-69 (81)
7 cd06396 PB1_NBR1 The PB1 domai 96.3 0.013 2.9E-07 47.4 6.5 53 203-285 3-55 (81)
8 cd06401 PB1_TFG The PB1 domain 95.8 0.045 9.8E-07 44.5 7.4 72 203-301 3-78 (81)
9 cd06403 PB1_Par6 The PB1 domai 94.8 0.083 1.8E-06 42.9 5.8 72 203-302 3-76 (80)
10 cd06402 PB1_p62 The PB1 domain 94.6 0.13 2.9E-06 42.1 6.6 59 201-287 1-65 (87)
11 cd06409 PB1_MUG70 The MUG70 pr 94.5 0.072 1.6E-06 43.5 4.9 53 210-287 7-61 (86)
12 cd06404 PB1_aPKC PB1 domain is 94.5 0.12 2.7E-06 42.2 6.1 56 203-287 3-58 (83)
13 cd06397 PB1_UP1 Uncharacterize 92.0 0.54 1.2E-05 38.5 6.1 66 203-298 3-69 (82)
14 cd06408 PB1_NoxR The PB1 domai 84.6 3.3 7.1E-05 34.0 6.1 64 202-297 4-68 (86)
15 cd06399 PB1_P40 The PB1 domain 52.2 25 0.00054 29.5 4.2 39 216-284 22-60 (92)
16 PF10411 DsbC_N: Disulfide bon 46.5 16 0.00034 27.2 2.0 17 271-287 34-50 (57)
17 cd06395 PB1_Map2k5 PB1 domain 41.2 40 0.00087 28.1 3.8 50 208-286 9-58 (91)
18 cd06406 PB1_P67 A PB1 domain i 25.8 3.2E+02 0.0069 22.4 6.5 65 202-297 4-69 (80)
19 COG5153 CVT17 Putative lipase 24.8 46 0.00099 33.8 1.9 49 275-324 149-214 (425)
20 KOG4540 Putative lipase essent 24.8 46 0.00099 33.8 1.9 49 275-324 149-214 (425)
21 KOG3957 Predicted L-carnitine 20.6 1.1E+02 0.0025 31.3 3.7 80 212-308 177-256 (387)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=1.4e-57 Score=411.61 Aligned_cols=137 Identities=53% Similarity=0.887 Sum_probs=6.0
Q ss_pred CCCCCCCccccCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEecCcccceeecCCCCCChH
Q 020493 146 KRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYE 225 (325)
Q Consensus 146 ~r~a~aqVVGWPPVRS~RKN~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~fVKV~MDGvpIGRKVDL~~y~sYe 225 (325)
.+.++++||||||||+||+|++.... ....++||||+|||+||||||||++|+||+
T Consensus 79 ~p~~~~~~vgwpp~~s~r~n~~~~~~------------------------~~~~~~~vKV~mdG~~igRkVDL~~~~sY~ 134 (215)
T PF02309_consen 79 PPASKAQVVGWPPVRSFRKNSLSEKQ------------------------SSSSRSYVKVNMDGVPIGRKVDLSAYSSYE 134 (215)
T ss_dssp -------BTTBS----S---------------------------------------------------------------
T ss_pred CCcccccccCCCcccccccccccccc------------------------cccCCceeEEEecCcccceecCHHHhhCHH
Confidence 34567899999999999999876220 112378999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeEecCCcChhHHhhcceEeEEecCc
Q 020493 226 KLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSS 305 (325)
Q Consensus 226 eLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwMLVGDVPWemFv~SvKRLrImk~s 305 (325)
+|+.+|++||.+|.+.++.+. ...+..+.++++++ +|+|||||+||||||||||||+|||++|||||||+.+
T Consensus 135 ~L~~~L~~MF~~~~i~~~~~~-------~~~~~~~~~~~~~~-~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~ 206 (215)
T PF02309_consen 135 ELSSALEKMFSCFSIEQCGSH-------GLNESGLLDLLNGS-EYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSS 206 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCCccccccc-------cccchhhccccCCc-ceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHH
Confidence 999999999987755443321 11112233455665 9999999999999999999999999999999999999
Q ss_pred ccccccccC
Q 020493 306 EVSALSREK 314 (325)
Q Consensus 306 Ea~~l~~~~ 314 (325)
|+.+|+|++
T Consensus 207 e~~~~~~r~ 215 (215)
T PF02309_consen 207 EAKGLAPRA 215 (215)
T ss_dssp ---------
T ss_pred HhcccCCCC
Confidence 999999974
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.09 E-value=0.0013 Score=50.45 Aligned_cols=68 Identities=24% Similarity=0.398 Sum_probs=54.0
Q ss_pred ceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCe
Q 020493 202 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR 281 (325)
Q Consensus 202 fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDw 281 (325)
-|||+..|. +=|.+.+..--+|++|...+...|.. . ...+.|.|.|.||||
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~--------------------------~--~~~~~l~Y~D~dgD~ 53 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGL--------------------------L--DEDFQLKYKDEDGDL 53 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTT--------------------------S--TSSEEEEEEETTSSE
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCC--------------------------C--CccEEEEeeCCCCCE
Confidence 379999995 43458888888999999999999962 0 136999999999999
Q ss_pred EecCC-cChhHHhhcceE
Q 020493 282 MLVGD-VPWHMFVSTVTR 298 (325)
Q Consensus 282 MLVGD-VPWemFv~SvKR 298 (325)
..+-+ .=|.+.++.+++
T Consensus 54 V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 54 VTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHh
Confidence 98885 457888877753
No 3
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=96.94 E-value=0.0032 Score=51.49 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=53.7
Q ss_pred ceEEEecCcccceeecCC---CCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCC
Q 020493 202 FVKINMDGVPIGRKVDLN---AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNE 278 (325)
Q Consensus 202 fVKV~MDGvpIGRKVDL~---~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkE 278 (325)
-|||.-+|.-+=-++++. .--+|+.|...+.+.|.- ....+|+|.|.|.|
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l---------------------------~~~~~~~l~Y~Ded 54 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL---------------------------SPDADLSLTYTDED 54 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC---------------------------CCCCcEEEEEECCC
Confidence 489999998665666664 567999999999999951 11247999999999
Q ss_pred CCeEecCCcChhHHhhcceE
Q 020493 279 GDRMLVGDVPWHMFVSTVTR 298 (325)
Q Consensus 279 GDwMLVGDVPWemFv~SvKR 298 (325)
|||+.+-.. .+|...+.+
T Consensus 55 gd~V~l~~D--~DL~~a~~~ 72 (91)
T cd06398 55 GDVVTLVDD--NDLTDAIQY 72 (91)
T ss_pred CCEEEEccH--HHHHHHHHH
Confidence 999999887 677766665
No 4
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=96.80 E-value=0.0045 Score=49.61 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=42.9
Q ss_pred ceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCe
Q 020493 202 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR 281 (325)
Q Consensus 202 fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDw 281 (325)
=|||...|.- +.+-|..--+|++|...+.++|.. +..+.|.|-|.|.||||
T Consensus 2 ~vK~~~~~d~--~r~~l~~~~~~~~L~~~i~~r~~~---------------------------~~~~~f~LkY~Ddegd~ 52 (82)
T cd06407 2 RVKATYGEEK--IRFRLPPSWGFTELKQEIAKRFKL---------------------------DDMSAFDLKYLDDDEEW 52 (82)
T ss_pred EEEEEeCCeE--EEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCCCeeEEEEECCCCCe
Confidence 3899998864 344455555999999999999961 01137999999999999
Q ss_pred EecCCc
Q 020493 282 MLVGDV 287 (325)
Q Consensus 282 MLVGDV 287 (325)
.++--.
T Consensus 53 v~ltsd 58 (82)
T cd06407 53 VLLTCD 58 (82)
T ss_pred EEeecH
Confidence 987543
No 5
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=96.52 E-value=0.014 Score=44.68 Aligned_cols=65 Identities=25% Similarity=0.374 Sum_probs=50.4
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493 203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 282 (325)
Q Consensus 203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM 282 (325)
|||.-.| --|.+-+..--+|++|...+.+.|.. . ...+.|.|.|.||||+
T Consensus 4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~---------------------------~-~~~~~l~Y~Dedgd~v 53 (81)
T smart00666 4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGL---------------------------D-NQSFTLKYQDEDGDLV 53 (81)
T ss_pred EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCC---------------------------C-CCCeEEEEECCCCCEE
Confidence 7887754 35777777788999999999999951 0 1368999999999999
Q ss_pred ecCC-cChhHHhhcce
Q 020493 283 LVGD-VPWHMFVSTVT 297 (325)
Q Consensus 283 LVGD-VPWemFv~SvK 297 (325)
.+.+ .=|.+.++.++
T Consensus 54 ~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 54 SLTSDEDLEEAIEEYD 69 (81)
T ss_pred EecCHHHHHHHHHHHH
Confidence 7765 56777777665
No 6
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.51 E-value=0.015 Score=44.24 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=50.2
Q ss_pred ceEEEecCcccceeecCC-CCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCC
Q 020493 202 FVKINMDGVPIGRKVDLN-AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGD 280 (325)
Q Consensus 202 fVKV~MDGvpIGRKVDL~-~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGD 280 (325)
-|||+-.|. -|.+=+. .--+|++|...|.+.|... ...+.+.|.|.|||
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~----------------------------~~~~~l~y~D~e~d 51 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD----------------------------AVSFKLKYPDEDGD 51 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC----------------------------CCcEEEEeeCCCCC
Confidence 378888764 2444444 7889999999999999620 03689999999999
Q ss_pred eEecCC-cChhHHhhcce
Q 020493 281 RMLVGD-VPWHMFVSTVT 297 (325)
Q Consensus 281 wMLVGD-VPWemFv~SvK 297 (325)
|..+.+ .=|++.++.++
T Consensus 52 ~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 52 LVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEEeCCHHHHHHHHHHHh
Confidence 999988 56777777665
No 7
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.32 E-value=0.013 Score=47.38 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=45.6
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493 203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 282 (325)
Q Consensus 203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM 282 (325)
|||.-.|.-+--+++-+..-+|++|...+.++|. ++ .|.|.|-|.||||+
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~---------------------------l~---~f~lKYlDde~e~v 52 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG---------------------------LN---DIQIKYVDEENEEV 52 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC---------------------------CC---cceeEEEcCCCCEE
Confidence 7999999877778888888899999999999995 11 58999999999998
Q ss_pred ecC
Q 020493 283 LVG 285 (325)
Q Consensus 283 LVG 285 (325)
++-
T Consensus 53 ~ls 55 (81)
T cd06396 53 SVN 55 (81)
T ss_pred EEE
Confidence 874
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=95.83 E-value=0.045 Score=44.48 Aligned_cols=72 Identities=25% Similarity=0.526 Sum_probs=48.4
Q ss_pred eEEEecCcccceeecCCCCC-ChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCe
Q 020493 203 VKINMDGVPIGRKVDLNAYD-SYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR 281 (325)
Q Consensus 203 VKV~MDGvpIGRKVDL~~y~-sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDw 281 (325)
+|+...| .| |.+=+..-. +|.+|...+.+.|... +..+..+.+.|.|.|||+
T Consensus 3 iK~~~g~-Di-R~~~~~~~~~t~~~L~~~v~~~F~~~-------------------------~~~~~~flIKYkD~dGDl 55 (81)
T cd06401 3 LKAQLGD-DI-RRIPIHNEDITYDELLLMMQRVFRGK-------------------------LGSSDDVLIKYKDEDGDL 55 (81)
T ss_pred EEEEeCC-eE-EEEeccCccccHHHHHHHHHHHhccc-------------------------cCCcccEEEEEECCCCCE
Confidence 6776655 35 444444323 9999999999999731 112357999999999999
Q ss_pred EecCCc---ChhHHhhcceEeEE
Q 020493 282 MLVGDV---PWHMFVSTVTRLRV 301 (325)
Q Consensus 282 MLVGDV---PWemFv~SvKRLrI 301 (325)
.=|-+- -|..=.....||+|
T Consensus 56 VTIts~~dL~~A~~~~~~~~l~~ 78 (81)
T cd06401 56 ITIFDSSDLSFAIQCSRILKLTL 78 (81)
T ss_pred EEeccHHHHHHHHhcCcceEEEE
Confidence 999875 33333334445555
No 9
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=94.80 E-value=0.083 Score=42.93 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=51.0
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493 203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 282 (325)
Q Consensus 203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM 282 (325)
||...|+.=-=-.+|.....+|+++..-|+.||.- . .-.|+|-|.|.+||.+
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l---------------------------~-~~~f~i~Y~D~~gDLL 54 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI---------------------------P-NVDFLIGYTDPHGDLL 54 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC---------------------------C-CCcEEEEEeCCCCCEe
Confidence 56666665333356666679999999999999961 1 1369999999999999
Q ss_pred ecC-CcChhHHhhcceE-eEEe
Q 020493 283 LVG-DVPWHMFVSTVTR-LRVL 302 (325)
Q Consensus 283 LVG-DVPWemFv~SvKR-LrIm 302 (325)
=+- |+-...=++++++ |||+
T Consensus 55 PInNDdNf~kAlssa~plLRl~ 76 (80)
T cd06403 55 PINNDDNFLKALSSANPLLRIF 76 (80)
T ss_pred cccCcHHHHHHHHcCCCceEEE
Confidence 775 4555555667764 4443
No 10
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=94.57 E-value=0.13 Score=42.06 Aligned_cols=59 Identities=32% Similarity=0.501 Sum_probs=43.1
Q ss_pred CceEEEecC----ccccee--ecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEE
Q 020493 201 PFVKINMDG----VPIGRK--VDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVY 274 (325)
Q Consensus 201 ~fVKV~MDG----vpIGRK--VDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltY 274 (325)
+.||.+..| ..| |. ||=...-+|+.|...+.++|... .+ ..|+|.|
T Consensus 1 ~~vkayl~~~~~~~EI-RRf~l~~~~~~s~~~L~~~V~~~f~~l--------------------------~~-~~ftlky 52 (87)
T cd06402 1 LTVKAYLLGKDANAEI-RRFAIDEDVSTSYEYLVEKVAAVFPSL--------------------------RG-KNFQLFW 52 (87)
T ss_pred CeEEEeecCCCCccce-EEEEecCCCCcCHHHHHHHHHHHcccc--------------------------CC-CcEEEEE
Confidence 357777766 333 44 34466779999999999999621 11 3799999
Q ss_pred ecCCCCeEecCCc
Q 020493 275 EDNEGDRMLVGDV 287 (325)
Q Consensus 275 EDkEGDwMLVGDV 287 (325)
.|.|||..-+...
T Consensus 53 ~DeeGDlvtIssd 65 (87)
T cd06402 53 KDEEGDLVAFSSD 65 (87)
T ss_pred ECCCCCEEeecCH
Confidence 9999999887764
No 11
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.49 E-value=0.072 Score=43.52 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=37.8
Q ss_pred cccceeecCC--CCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeEecCCc
Q 020493 210 VPIGRKVDLN--AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDV 287 (325)
Q Consensus 210 vpIGRKVDL~--~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwMLVGDV 287 (325)
.|-||.+=++ ...||.+|..++.+=|+. .... .+.|.|.|.|.||||+|.-=.
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~-----------------------d~~~--~~~~~L~YlDDEgD~VllT~D 61 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGD-----------------------DDFE--THLYALSYVDDEGDIVLITSD 61 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCC-----------------------cccc--CCcccEEEEcCCCCEEEEecc
Confidence 4566655444 478999999999998852 0000 236999999999999987533
No 12
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=94.48 E-value=0.12 Score=42.19 Aligned_cols=56 Identities=27% Similarity=0.328 Sum_probs=43.8
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493 203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 282 (325)
Q Consensus 203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM 282 (325)
||++-.|.-.--.+|. .-+|+.|.+.+.+||.- .. ...|++.|.|.|||-.
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~--------------------------~~-~q~ft~kw~DEEGDp~ 53 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF--------------------------HN-DQPFTLKWIDEEGDPC 53 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC--------------------------CC-CCcEEEEEECCCCCce
Confidence 7899999755555666 67899999999999962 11 1369999999999988
Q ss_pred ecCCc
Q 020493 283 LVGDV 287 (325)
Q Consensus 283 LVGDV 287 (325)
-+...
T Consensus 54 tiSS~ 58 (83)
T cd06404 54 TISSQ 58 (83)
T ss_pred eecCH
Confidence 77654
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=91.97 E-value=0.54 Score=38.49 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=49.0
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeE
Q 020493 203 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 282 (325)
Q Consensus 203 VKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwM 282 (325)
-||+-.|. .|++-...-=+|..|...|+.+|.-. .. .+.|||.|.|||.+
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp---------------------------~~-~~~vtYiDeD~D~I 52 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLP---------------------------EI-KVGVTYIDNDNDEI 52 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCC---------------------------hh-HeEEEEEcCCCCEE
Confidence 47777773 68888888889999999999999621 01 27999999999988
Q ss_pred ecCC-cChhHHhhcceE
Q 020493 283 LVGD-VPWHMFVSTVTR 298 (325)
Q Consensus 283 LVGD-VPWemFv~SvKR 298 (325)
-+-| .=-++|.+-..|
T Consensus 53 Tlssd~eL~d~~~~~~~ 69 (82)
T cd06397 53 TLSSNKELQDFYRLSHR 69 (82)
T ss_pred EecchHHHHHHHHhccc
Confidence 5554 555566654444
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=84.59 E-value=3.3 Score=34.04 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=47.2
Q ss_pred ceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCe
Q 020493 202 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR 281 (325)
Q Consensus 202 fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDw 281 (325)
=|||+-.|. -|-|-+..-=+|++|...+.++|.- ...++|-|.|. ||.
T Consensus 4 kVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-----------------------------~~~~~iKykDE-GD~ 51 (86)
T cd06408 4 RVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-----------------------------KRRLKIKMKDD-GDM 51 (86)
T ss_pred EEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-----------------------------CCceEEEEEcC-CCC
Confidence 488888886 4556666666799999999999951 02689999999 999
Q ss_pred EecCCc-ChhHHhhcce
Q 020493 282 MLVGDV-PWHMFVSTVT 297 (325)
Q Consensus 282 MLVGDV-PWemFv~SvK 297 (325)
.-++|- =-++=+.++|
T Consensus 52 iti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 52 ITMGDQDDLDMAIDTAR 68 (86)
T ss_pred ccccCHHHHHHHHHHHH
Confidence 988874 2344444444
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=52.22 E-value=25 Score=29.49 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=30.4
Q ss_pred ecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeEec
Q 020493 216 VDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLV 284 (325)
Q Consensus 216 VDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwMLV 284 (325)
=||+.--+|.+|..-..+-|.. .+-+|-|.|.|||.+-+
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~------------------------------~dIaLNYrD~EGDLIRl 60 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQR------------------------------EDIALNYRDAEGDLIRL 60 (92)
T ss_pred cccccCccHHHHHHHHHHHhch------------------------------hheeeeeecCCCCEEEE
Confidence 3788888999998888888852 14579999999998543
No 16
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=46.49 E-value=16 Score=27.17 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=14.6
Q ss_pred EEEEecCCCCeEecCCc
Q 020493 271 TLVYEDNEGDRMLVGDV 287 (325)
Q Consensus 271 vltYEDkEGDwMLVGDV 287 (325)
-+.|.|.||+.+++|++
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 48899999999999985
No 17
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=41.22 E-value=40 Score=28.06 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=33.5
Q ss_pred cCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeEecCC
Q 020493 208 DGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGD 286 (325)
Q Consensus 208 DGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwMLVGD 286 (325)
+|..+--.||...+=+|.+++.++.+....- .--.+-|||.|||++-|--
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~a-----------------------------T~tAFeYEDE~gDRITVRS 58 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEA-----------------------------TTTAFEYEDEDGDRITVRS 58 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhcccc-----------------------------cccceeeccccCCeeEecc
Confidence 3445666677777777888887777755310 1124679999999988754
No 18
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=25.84 E-value=3.2e+02 Score=22.36 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=46.5
Q ss_pred ceEEEecCcccceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCC-C
Q 020493 202 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEG-D 280 (325)
Q Consensus 202 fVKV~MDGvpIGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEG-D 280 (325)
-|||+..+ - =.|-...=-+|.+|...|.+=+.- . + .+-+|.|.|.+. +
T Consensus 4 vvKV~f~~-t--IaIrvp~~~~y~~L~~ki~~kLkl--------------------------~-~-e~i~LsYkde~s~~ 52 (80)
T cd06406 4 VVKVHFKY-T--VAIQVARGLSYATLLQKISSKLEL--------------------------P-A-EHITLSYKSEASGE 52 (80)
T ss_pred EEEEEEEE-E--EEEEcCCCCCHHHHHHHHHHHhCC--------------------------C-c-hhcEEEeccCCCCC
Confidence 48999998 2 345556667899999998887641 0 1 235788988774 4
Q ss_pred eEecCCcChhHHhhcce
Q 020493 281 RMLVGDVPWHMFVSTVT 297 (325)
Q Consensus 281 wMLVGDVPWemFv~SvK 297 (325)
...++|-=|+.-.+.|+
T Consensus 53 ~v~l~d~dle~aws~~~ 69 (80)
T cd06406 53 DVILSDTNMEDVWSQAK 69 (80)
T ss_pred ccCcChHHHHHHHHhhc
Confidence 44459988888888887
No 19
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=24.79 E-value=46 Score=33.82 Aligned_cols=49 Identities=29% Similarity=0.393 Sum_probs=38.0
Q ss_pred ecCCCCeEecCCcChh-----------------HHhhcceEeEEecCcccccccccCcCCchhhhcc
Q 020493 275 EDNEGDRMLVGDVPWH-----------------MFVSTVTRLRVLKSSEVSALSREKFGNSRQDKIL 324 (325)
Q Consensus 275 EDkEGDwMLVGDVPWe-----------------mFv~SvKRLrImk~sEa~~l~~~~~~~~~~~k~~ 324 (325)
.+-||||.-||. ||. .|-+-++-+-|++.....-|++..-+-|.+||+.
T Consensus 149 ip~dgdw~nv~~-~wn~T~pe~FGwdgDGlRghVF~nd~~~vv~~~~kgtSi~Gl~g~gTs~kDk~n 214 (425)
T COG5153 149 IPLDGDWRNVTE-PWNETVPETFGWDGDGLRGHVFGNDGKIVVAFKGKGTSIMGLEGGGTSRKDKLN 214 (425)
T ss_pred CCCCCcccccCC-CcccCCccccCcCCCCceeeeeccCCceEEEEEeccceEEeeccCCccccccch
Confidence 478999999996 776 6888899888888777776666555567888864
No 20
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=24.79 E-value=46 Score=33.82 Aligned_cols=49 Identities=29% Similarity=0.393 Sum_probs=38.0
Q ss_pred ecCCCCeEecCCcChh-----------------HHhhcceEeEEecCcccccccccCcCCchhhhcc
Q 020493 275 EDNEGDRMLVGDVPWH-----------------MFVSTVTRLRVLKSSEVSALSREKFGNSRQDKIL 324 (325)
Q Consensus 275 EDkEGDwMLVGDVPWe-----------------mFv~SvKRLrImk~sEa~~l~~~~~~~~~~~k~~ 324 (325)
.+-||||.-||. ||. .|-+-++-+-|++.....-|++..-+-|.+||+.
T Consensus 149 ip~dgdw~nv~~-~wn~T~pe~FGwdgDGlRghVF~nd~~~vv~~~~kgtSi~Gl~g~gTs~kDk~n 214 (425)
T KOG4540|consen 149 IPLDGDWRNVTE-PWNETVPETFGWDGDGLRGHVFGNDGKIVVAFKGKGTSIMGLEGGGTSRKDKLN 214 (425)
T ss_pred CCCCCcccccCC-CcccCCccccCcCCCCceeeeeccCCceEEEEEeccceEEeeccCCccccccch
Confidence 478999999996 776 6888899888888777776666555567888864
No 21
>KOG3957 consensus Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase [Lipid transport and metabolism]
Probab=20.63 E-value=1.1e+02 Score=31.30 Aligned_cols=80 Identities=24% Similarity=0.250 Sum_probs=55.4
Q ss_pred cceeecCCCCCChHHHHHHHHHHHhhhhhcccCCCCCcccchhhhhHhhhcCCCCCCCeEEEEecCCCCeEecCCcChhH
Q 020493 212 IGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHM 291 (325)
Q Consensus 212 IGRKVDL~~y~sYeeLs~aLe~MF~~~~~~q~~~s~~~~~~~~~e~k~i~~lldgs~eyvltYEDkEGDwMLVGDVPWem 291 (325)
-|-.||-++..+-.-|+.-|..=+. ..+ -+... .++++|+.-+-=||+-+||-.|+||-+= .-
T Consensus 177 kGqviD~~m~eg~ayl~S~v~~~y~---~s~------------~ea~R-~~~~~G~~~~Y~tykTkDG~fmavga~e-pQ 239 (387)
T KOG3957|consen 177 KGQVIDCNMLEGVAYLLSFVQKNYL---QSL------------WEADR-YGTAHGSIPPYQTYKTKDGYFMAVGALE-PQ 239 (387)
T ss_pred CceEEEechhHhHHHHHHHHHHHhh---hhh------------ccccc-cccccCCCccceeeeccCceEEEecccc-HH
Confidence 4677888888777777766655442 211 11112 4567777666678999999999999873 36
Q ss_pred HhhcceEeEEecCcccc
Q 020493 292 FVSTVTRLRVLKSSEVS 308 (325)
Q Consensus 292 Fv~SvKRLrImk~sEa~ 308 (325)
|...|+++-.++..+..
T Consensus 240 F~~~l~~ll~~~~d~~p 256 (387)
T KOG3957|consen 240 FYELLKKLLGLKLDENP 256 (387)
T ss_pred HHHHHHHhhCcccccch
Confidence 99999998887766543
Done!