Citrus Sinensis ID: 020494

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFDRVLWL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEEEEcccEEEEEEEccccccccccEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccccccccccccEEcccccccccccccccccccHHHHHHHHccccccccccEEEEEcccccEEEEcccccccccccccEEEEEEEEEcHEEEEEEEcccccccccccEEEEEccHHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEccccEEEEEcccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAYYRRAKAALDAFRNlsskavpkspvqescsrvysngsansakfssgfysySCISQrlrnsycnpnfntakryyyvdryhvqhfrprgprkwlqnprTVFIVVVIGSGAFITLYLgnletvpytkrTHFVLLSKAVERQLGESQFQQMKAAFKgkilpaihpdsVRVRLIAKDIIEALQRGLkhetvwsdmgyastetdfvnegRAARDTLRALSensergktegkwhqedeilddkWVQQSRKKGQEKGLQSAtshldglnweVLVVNEpvinafclpggkivVFTGLLEHFRTDAEIATIighedgngsrLYRAAFDRVLWL
Flexible Loop (DISEMBL)
MAYYRRAKAAldafrnlsskavpkspvqesCSRVYSNgsansakfsSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFrprgprkwlqnpRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRglkhetvwsdmgyastetdfvnegRAARDTLRalsensergktegkwhqedeilddKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATiighedgngsrlyRAAFDRVLWL
Low Complexity Region (SEG)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFDRVLWL
Disordered region (IsUnstruct)
********************************************FSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFV*******************************************************HLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFDRVLW*
Disordered Region (DISOPRED)
**Y***AKAALD*****************************************************PNFNTAKRYYYVDRYHVQ*F*PRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVN**********************************KWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAA*D*VLWL
Disordered Region (DISEMBL)
MAYYRRAKAALDAFRNLSS***************YSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRAL**************QEDEILDDKWVQ**************TSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFDRVLWL
Disordered Region (DISPRO)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFV*EGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFDRVLWL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFDRVLWL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
P36163	345	Mitochondrial metalloendo	yes	no	0.156	0.147	0.490	1e-07
Q9P7G4	337	Mitochondrial metalloendo	yes	no	0.147	0.142	0.392	1e-06
Q96E52	524	Metalloendopeptidase OMA1	yes	no	0.101	0.062	0.408	2e-05
Q9D8H7	521	Metalloendopeptidase OMA1	yes	no	0.089	0.055	0.444	2e-05
D3ZS74	504	Metalloendopeptidase OMA1	yes	no	0.141	0.091	0.456	3e-05
Q3SZN3	523	Metalloendopeptidase OMA1	yes	no	0.092	0.057	0.456	3e-05
E9QBI7	478	Metalloendopeptidase OMA1	yes	no	0.169	0.115	0.381	3e-05

>sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           S LDG+ WE+ VVN+P    NAF LPGGK+ +F+ +L     D  IAT++ HE
Sbjct: 152 SLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHE 204

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Can cleave the misfolded multi-pass membrane protein OXA1.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGN 310
           A S +  L WE+ V+ +P  NAF LPGGK+ VF G+L   + +  +A ++ HE  +
Sbjct: 144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHETAH 199

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           +  +NW + VV+ P+INAF LP G++ VFTG L       +++ ++GHE
Sbjct: 280 ISQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHE 328

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           NW V VV+ P +NAF LP G++ +FTGLL       +++ ++GHE
Sbjct: 280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLGHE 324

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus GN=Oma1 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           +NW V VV+ P +NAF LP G++ VFTGLL       +++ ++GHE
Sbjct: 262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHE 307

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           +NW + VV+ P INAF LP G++ VFTGLL       +++ ++GHE
Sbjct: 283 INWIIHVVDSPDINAFVLPNGQVFVFTGLLNSVTDIHQLSFLLGHE 328

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 257 SHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNG 311
           + +  + W V VV+ P +NAF LP G+I VFTG+L       ++  I+GHE  + 
Sbjct: 247 AEISAVPWTVHVVDSPTMNAFVLPNGEIFVFTGMLNAVTDIHQLTFILGHEMAHA 301

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of opa1 at S1 position, leading to opa1 inactivation and negative regulation of mitochondrial fusion.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
255539649	482	peptidase, putative [Ricinus communis] g	0.987	0.665	0.624	1e-119
449460776	440	PREDICTED: uncharacterized protein LOC10	0.932	0.688	0.663	1e-113
449499671	440	PREDICTED: uncharacterized LOC101206881	0.932	0.688	0.663	1e-113
356530935	448	PREDICTED: uncharacterized protein LOC10	0.941	0.683	0.633	1e-109
225455604	434	PREDICTED: mitochondrial metalloendopept	0.966	0.723	0.623	1e-108
224122540	382	predicted protein [Populus trichocarpa]	0.769	0.654	0.726	1e-106
297792483	436	peptidase M48 family protein [Arabidopsi	0.987	0.736	0.529	1e-96
10177873	485	unnamed protein product [Arabidopsis tha	0.978	0.655	0.532	1e-96
30696099	442	Peptidase family M48 family protein [Ara	0.978	0.719	0.532	2e-96
356517492	445	PREDICTED: uncharacterized protein LOC10	0.932	0.680	0.560	3e-92

>gi|255539649|ref|XP_002510889.1| peptidase, putative [Ricinus communis] gi|223550004|gb|EEF51491.1| peptidase, putative [Ricinus communis]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/341 (62%), Positives = 268/341 (78%), Gaps = 20/341 (5%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPV-QESCSRVYSNGSANSA-----KFSSGFYSYSC 54
           M  +++AK A+D FRN +SK   ++P+ QES SR+Y NGS++ +     KFS GFY YS 
Sbjct: 32  MERFKKAKLAIDTFRNYASKINHRAPLHQESISRIYQNGSSSVSSSNQSKFS-GFYPYSS 90

Query: 55  ISQRL--------RNSYCNPNF-NTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVV 105
           +SQRL        +  + NP   ++ KR+YYVDRY V HF+PRGPR+W QNPR+V IV +
Sbjct: 91  VSQRLGLGFQMGTKKIHSNPFLGSSGKRFYYVDRYQVHHFKPRGPRRWFQNPRSVLIVFL 150

Query: 106 IGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDS 165
           +GSG FIT+Y GNLETVPYTKR HFVLL+K++E+++GE+QF+QMKAAFKGK+LPAIHP+S
Sbjct: 151 VGSGVFITVYFGNLETVPYTKRKHFVLLAKSMEKKIGENQFEQMKAAFKGKMLPAIHPES 210

Query: 166 VRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTE 225
           VRVRLIAKDIIEALQRGL+ ETVWSDMGYAS+E D  +E    R+TLRAL+EN E  K E
Sbjct: 211 VRVRLIAKDIIEALQRGLRQETVWSDMGYASSENDMKHEA-TGRETLRALTENEE--KVE 267

Query: 226 GKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIV 285
            KW++EDE+LDD W+Q SRKKGQE+G ++ TSHL+GLNWEVLVVN+PV+NA CLPGGKI+
Sbjct: 268 TKWYKEDEVLDDNWIQHSRKKGQERGSRAETSHLEGLNWEVLVVNDPVVNALCLPGGKII 327

Query: 286 VFTGLLEHFRTDAEIATIIGHEDGNG-SRLYRAAFDRVLWL 325
           VFTGLL+HF+TDAEIATIIGHE G+  +R       + LW 
Sbjct: 328 VFTGLLDHFKTDAEIATIIGHEVGHAVARHVAEGITKNLWF 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460776|ref|XP_004148121.1| PREDICTED: uncharacterized protein LOC101206881 [Cucumis sativus]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/312 (66%), Positives = 242/312 (77%), Gaps = 9/312 (2%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNG---SANSAKFSSGFYSYSCISQ 57
           M  +R++K   DAFRN SSK  PK  +Q S SR+   G   S+     S GF S S I +
Sbjct: 1   MNCFRKSKFVFDAFRNPSSKIFPKDLIQGSRSRISHTGYSFSSGKTSNSHGFQSVSPIVR 60

Query: 58  RLR--NSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLY 115
           R        NP F  +KR+YYVDRY +QHF+PRGPR+W Q+PRT+ IVVV+GSG FIT+Y
Sbjct: 61  RFGEIGRRYNPFFGDSKRFYYVDRYRIQHFKPRGPRRWFQDPRTLLIVVVLGSGVFITVY 120

Query: 116 LGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDI 175
            GNLETVPYTKR HFVLLSK +ER++GES+F+QMKAAFKGKILPAIHP+SVRVRLIAKDI
Sbjct: 121 YGNLETVPYTKRRHFVLLSKPMERKIGESEFEQMKAAFKGKILPAIHPESVRVRLIAKDI 180

Query: 176 IEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEIL 235
           IEALQRGL+ E VW+D+GYAS       EG +  +TL AL ++    K EGKW++EDEIL
Sbjct: 181 IEALQRGLRQENVWNDLGYASEAVIGAPEG-SGHETLMALKDSGSE-KLEGKWYREDEIL 238

Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFR 295
           DDKWV+ SRKKGQ  G Q+ TSHLDGLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHFR
Sbjct: 239 DDKWVEHSRKKGQ--GSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFR 296

Query: 296 TDAEIATIIGHE 307
           +DAEIATIIGHE
Sbjct: 297 SDAEIATIIGHE 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499671|ref|XP_004160882.1| PREDICTED: uncharacterized LOC101206881 [Cucumis sativus]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/312 (66%), Positives = 242/312 (77%), Gaps = 9/312 (2%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNG---SANSAKFSSGFYSYSCISQ 57
           M  +R++K   DAFRN SSK  PK  +Q S SR+   G   S+     S GF S S I +
Sbjct: 1   MNCFRKSKFVFDAFRNPSSKIFPKDLIQGSRSRISHTGYSFSSGRTSNSHGFQSVSPIVR 60

Query: 58  RLR--NSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLY 115
           R        NP F  +KR+YYVDRY +QHF+PRGPR+W Q+PRT+ IVVV+GSG FIT+Y
Sbjct: 61  RFGEIGRRYNPFFGDSKRFYYVDRYRIQHFKPRGPRRWFQDPRTLLIVVVLGSGVFITVY 120

Query: 116 LGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDI 175
            GNLETVPYTKR HFVLLSK +ER++GES+F+QMKAAFKGKILPAIHP+SVRVRLIAKDI
Sbjct: 121 YGNLETVPYTKRRHFVLLSKPMERKIGESEFEQMKAAFKGKILPAIHPESVRVRLIAKDI 180

Query: 176 IEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEIL 235
           IEALQRGL+ E VW+D+GYAS       EG +  +TL AL ++    K EGKW++EDEIL
Sbjct: 181 IEALQRGLRQENVWNDLGYASEAVIGAPEG-SGHETLMALKDSGSE-KLEGKWYREDEIL 238

Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFR 295
           DDKWV+ SRKKGQ  G Q+ TSHLDGLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHFR
Sbjct: 239 DDKWVEHSRKKGQ--GSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFR 296

Query: 296 TDAEIATIIGHE 307
           +DAEIATIIGHE
Sbjct: 297 SDAEIATIIGHE 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530935|ref|XP_003534034.1| PREDICTED: uncharacterized protein LOC100799127 [Glycine max]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 250/322 (77%), Gaps = 16/322 (4%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANS-AKFSS--GFYSYSCISQ 57
           M +YRR K ALD FR L+S+  P++P+ +  +R+ S+G  +S +K +S  GF S+   SQ
Sbjct: 1   MGWYRRGKLALDHFRRLASRVTPQNPIFQRGARICSSGYLDSGSKVASFNGFSSFCSTSQ 60

Query: 58  RLRNSYC---NPNFNT-----AKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSG 109
           RL        N NF+      AKR+YYVD  +V+HF+PRGP  W +NPR VFIVV++GSG
Sbjct: 61  RLGTRGVVGVNRNFHNSVLFGAKRFYYVDPRNVRHFKPRGPWHWFENPRHVFIVVMVGSG 120

Query: 110 AFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVR 169
             IT+Y GN+ETVPYTKRTH +LLSKA+ER+LGES+F+Q+K  FKGKILP IHP+SVRV 
Sbjct: 121 VLITVYFGNIETVPYTKRTHLILLSKAMERKLGESEFEQIKTGFKGKILPPIHPESVRVT 180

Query: 170 LIAKDIIEALQRGL-KHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKW 228
           +IAKDII+ALQRGL K E VWSD+GYAS     V EG   R+TL AL+ + E  K EG W
Sbjct: 181 MIAKDIIDALQRGLRKEEQVWSDLGYASEHAMLV-EGD-GRETLNALAGSEE--KIEGNW 236

Query: 229 HQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFT 288
            +EDEILDDKW+QQSRKKGQE+G Q+ATSHLDGLNWE+LVVNEPV+NAFCLPGGKIVVFT
Sbjct: 237 AKEDEILDDKWIQQSRKKGQERGSQAATSHLDGLNWEILVVNEPVVNAFCLPGGKIVVFT 296

Query: 289 GLLEHFRTDAEIATIIGHEDGN 310
           GLLEHF++DAEIATIIGHE G+
Sbjct: 297 GLLEHFKSDAEIATIIGHEVGH 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455604|ref|XP_002269952.1| PREDICTED: mitochondrial metalloendopeptidase OMA1 [Vitis vinifera]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/332 (62%), Positives = 254/332 (76%), Gaps = 18/332 (5%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSA----NSAKFSSGFYSYSCIS 56
           M++YRRAK+A +A R+    A+P++P+QE  SR+  N S+    N+++ S GF  +S IS
Sbjct: 1   MSFYRRAKSAFNALRS----AIPRTPIQEPTSRITHNPSSIYSSNNSRVS-GFSPFSLIS 55

Query: 57  QR--LRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITL 114
            +  L+  Y NP    A+RYYYVDRY VQHFRPRGPR+W QNPRTVFIVVV+GSG  IT+
Sbjct: 56  CQIGLKRCYPNPFLGGARRYYYVDRYRVQHFRPRGPRRWFQNPRTVFIVVVVGSGVLITV 115

Query: 115 YLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKD 174
           Y GNLE +PYT RTHFVLLS+++ER++GE+QF+Q+K  FKGKILPAIHPDSVRVRLI+ D
Sbjct: 116 YFGNLEAIPYTNRTHFVLLSRSMERRIGEAQFEQLKGTFKGKILPAIHPDSVRVRLISND 175

Query: 175 IIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI 234
           II+ALQRGL HE VWSD GYA+ E DF+ +    R+TL AL +        GKWH++DEI
Sbjct: 176 IIKALQRGLSHERVWSDPGYAA-EGDFMVDEARTRETLAALMDTP-----PGKWHKDDEI 229

Query: 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHF 294
           LDDKWV QSRK+ QE+G +  T HL+GLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHF
Sbjct: 230 LDDKWVHQSRKEAQERGSRPTTQHLEGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHF 289

Query: 295 RTDAEIATIIGHEDGNG-SRLYRAAFDRVLWL 325
           RTDAEIATIIGHE G+  +R       + LW 
Sbjct: 290 RTDAEIATIIGHEIGHAVARHAAEGITKNLWF 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122540|ref|XP_002318862.1| predicted protein [Populus trichocarpa] gi|222859535|gb|EEE97082.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/256 (72%), Positives = 220/256 (85%), Gaps = 6/256 (2%)

Query: 71  AKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHF 130
           AKR+YYVDRY VQHF+PRGP++W +NPRTV IVV++GSGAFIT+Y GNLETVPYTKR HF
Sbjct: 18  AKRFYYVDRYRVQHFKPRGPKRWFRNPRTVLIVVLVGSGAFITVYYGNLETVPYTKRRHF 77

Query: 131 VLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWS 190
           VLLSK +ER++GE+QF+QMKAAFKGK+LPA+HP+SVR+RLIA+DII+ALQRGLK E VWS
Sbjct: 78  VLLSKTMERKMGETQFEQMKAAFKGKMLPALHPESVRMRLIAQDIIDALQRGLKREQVWS 137

Query: 191 DMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEK 250
           DMGYAS E+D  +E  +A +TL+ALSE  E  K EGKW++EDEILDD WVQQ RKK  EK
Sbjct: 138 DMGYASQESDMAHEA-SAHETLKALSEREE--KIEGKWYKEDEILDDNWVQQCRKK--EK 192

Query: 251 GLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGN 310
           GL++  SHLDGLNWE+LVVNEPV+NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE G+
Sbjct: 193 GLKADASHLDGLNWEILVVNEPVVNAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVGH 252

Query: 311 G-SRLYRAAFDRVLWL 325
             +R       + LW+
Sbjct: 253 AVARHAAEGITKNLWV 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792483|ref|XP_002864126.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] gi|297309961|gb|EFH40385.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 173/327 (52%), Positives = 238/327 (72%), Gaps = 6/327 (1%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRL 59
           M++YRR K   D+ R N++ K +P+S +    + + S+G ++ +    G  S++ + Q  
Sbjct: 1   MSWYRRTKLVFDSLRRNINPKILPRSHLPSRINPIGSSGFSSISSRQVGLRSWTSLGQNT 60

Query: 60  RNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNL 119
                NP  +  KR YYVDRY V+HF+PRGP +W QNPRTVF VV++GS A ITLY+GNL
Sbjct: 61  NRIAYNPFLSVPKRNYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVIVGSVALITLYVGNL 120

Query: 120 ETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEAL 179
           ETVPYTKRTHF+LLSK +E+ LGE+QF+Q+K  +KGKILPAIHP+S+RVRLIAK++I+AL
Sbjct: 121 ETVPYTKRTHFILLSKPMEKLLGETQFEQIKKTYKGKILPAIHPESIRVRLIAKEVIDAL 180

Query: 180 QRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKW 239
           QRGL +E VWSD+GYASTE+      +  ++   A+S   E   T+ KW + D++LDD+W
Sbjct: 181 QRGLSNERVWSDLGYASTESSLGGGDKGVKEIEMAMS--GEDTMTDMKWSKADQVLDDEW 238

Query: 240 VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAE 299
           +QQSRKK  +    +A+SHL+G++WEVLVVNEP++NAFCLP GKIVVFTGLL+ F++DAE
Sbjct: 239 IQQSRKKDSKA--HAASSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGLLDIFKSDAE 296

Query: 300 IATIIGHEDGNG-SRLYRAAFDRVLWL 325
           +AT+IGHE G+  +R       + LW 
Sbjct: 297 VATVIGHEVGHAVARHVAEGITKNLWF 323

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177873|dbj|BAB11243.1| unnamed protein product [Arabidopsis thaliana]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 179/336 (53%), Positives = 242/336 (72%), Gaps = 18/336 (5%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
           M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct: 44  MSWYRRTKLVFDSLRRNINPKILPRSHV---TSRINNPIGSSNPSAKFSSISSREVGLRS 100

Query: 52  YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
           ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct: 101 WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 160

Query: 112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
           ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct: 161 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 220

Query: 172 AKDIIEALQRGLKHETVWSDMGYASTETDF-VNEGRAARDTLRALSENSERGKTEGKWHQ 230
           AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct: 221 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 278

Query: 231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
           ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct: 279 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 336

Query: 291 LEHFRTDAEIATIIGHEDGNG-SRLYRAAFDRVLWL 325
           L HF++DAE+AT+IGHE G+  +R       + LW 
Sbjct: 337 LNHFKSDAEVATVIGHEVGHAVARHVAEGITKNLWF 372

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696099|ref|NP_199987.2| Peptidase family M48 family protein [Arabidopsis thaliana] gi|26451602|dbj|BAC42898.1| unknown protein [Arabidopsis thaliana] gi|332008738|gb|AED96121.1| Peptidase family M48 family protein [Arabidopsis thaliana]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 179/336 (53%), Positives = 242/336 (72%), Gaps = 18/336 (5%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
           M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct: 1   MSWYRRTKLVFDSLRRNINPKILPRSHV---TSRINNPIGSSNPSAKFSSISSREVGLRS 57

Query: 52  YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
           ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct: 58  WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 117

Query: 112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
           ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct: 118 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 177

Query: 172 AKDIIEALQRGLKHETVWSDMGYASTETDF-VNEGRAARDTLRALSENSERGKTEGKWHQ 230
           AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct: 178 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 235

Query: 231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
           ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct: 236 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 293

Query: 291 LEHFRTDAEIATIIGHEDGNG-SRLYRAAFDRVLWL 325
           L HF++DAE+AT+IGHE G+  +R       + LW 
Sbjct: 294 LNHFKSDAEVATVIGHEVGHAVARHVAEGITKNLWF 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517492|ref|XP_003527421.1| PREDICTED: uncharacterized protein LOC100800848 [Glycine max]

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 181/323 (56%), Positives = 232/323 (71%), Gaps = 20/323 (6%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANS----AKFSSGFYSYSC-I 55
           M +YRR K ALD F +L+S+ VP++P+ +  SR++ +G  +S    A+FS    S  C I
Sbjct: 1   MGWYRRGKLALDRFHSLASRVVPQNPIFQHSSRIWQSGYLDSGSKGARFSG--LSLCCSI 58

Query: 56  SQRL--------RNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIG 107
           SQRL          ++ NP    A R+YYVD  +V+HF+PRGPR W QN R +F+ V++G
Sbjct: 59  SQRLGAQGVVGVNGNFHNPFLLGANRFYYVDPCNVRHFKPRGPRHWFQNSRHIFVAVMVG 118

Query: 108 SGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVR 167
               IT++ GNLETVPYTKRTH +LLSKA+ER+LGESQF+Q+KA F+GKILP IHP+SVR
Sbjct: 119 W-VLITVFFGNLETVPYTKRTHLILLSKAMERRLGESQFEQIKADFEGKILPPIHPESVR 177

Query: 168 VRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGK 227
           V +IA +II+AL R L  E  W+D GYAS E     EG   R+TL AL  + E  K EG 
Sbjct: 178 VTMIANEIIDALLRRLMKEQGWNDFGYAS-EHAMPVEGDG-RETLSALVGSEE--KVEGS 233

Query: 228 WHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVF 287
            H+E++ILD KWV+ SRK GQE+G   ATSHL GL+WE+LVVN+P +NAFCLPGGKIVVF
Sbjct: 234 CHKENKILDGKWVRLSRKNGQERGSLIATSHLVGLDWEILVVNKPDLNAFCLPGGKIVVF 293

Query: 288 TGLLEHFRTDAEIATIIGHEDGN 310
           TGL +HF++DAEIATIIGHE G+
Sbjct: 294 TGLFDHFKSDAEIATIIGHEVGH 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2165356	442	AT5G51740 [Arabidopsis thalian	0.975	0.717	0.534	9.3e-91
ASPGD|ASPL0000044232	376	AN1850 [Emericella nidulans (t	0.150	0.130	0.44	9.2e-13
POMBASE|SPAP14E8.04	337	oma1 "metallopeptidase Oma1 (p	0.163	0.157	0.415	7.4e-12
SGD|S000001795	345	OMA1 "Metalloendopeptidase of	0.156	0.147	0.490	2.3e-11
CGD|CAL0001997	336	orf19.3827 [Candida albicans (	0.243	0.235	0.285	1.8e-09
RGD|1304821	504	Oma1 "zinc metallopeptidase ho	0.141	0.091	0.456	1e-07
UNIPROTKB|E1C7A6	468	OMA1 "Uncharacterized protein"	0.150	0.104	0.448	1.2e-07
UNIPROTKB|H7BZX2	328	OMA1 "Metalloendopeptidase OMA	0.141	0.140	0.434	1.4e-07
DICTYBASE|DDB_G0289335	687	DDB_G0289335 "Metalloendopepti	0.276	0.131	0.373	2e-07
MGI|MGI:1914263	521	Oma1 "OMA1 homolog, zinc metal	0.138	0.086	0.444	3e-07

TAIR|locus:2165356 AT5G51740 [Arabidopsis thaliana (taxid:3702)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 179/335 (53%), Positives = 242/335 (72%)

Query:     1 MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
             M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct:     1 MSWYRRTKLVFDSLRRNINPKILPRSHVT---SRINNPIGSSNPSAKFSSISSREVGLRS 57

Query:    52 YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
             ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct:    58 WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 117

Query:   112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
             ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct:   118 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 177

Query:   172 AKDIIEALQRGLKHETVWSDMGYASTETDFVN-EGRAARDTLRALSENSERGKTEGKWHQ 230
             AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct:   178 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 235

Query:   231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
             ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct:   236 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 293

Query:   291 LEHFRTDAEIATIIGHEDGNG-SRLYRAAFDRVLW 324
             L HF++DAE+AT+IGHE G+  +R       + LW
Sbjct:   294 LNHFKSDAEVATVIGHEVGHAVARHVAEGITKNLW 328

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

ASPGD|ASPL0000044232 AN1850 [Emericella nidulans (taxid:162425)]

 Score = 125 (49.1 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
 Identities = 22/50 (44%), Positives = 36/50 (72%)

Query:   259 LDGLNWEVLVVNEP-VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             +DG +W+V V+ +  ++NAF LPGGK+ VFTG+L   + +  +A ++GHE
Sbjct:   186 IDGADWKVHVIKDDNMVNAFVLPGGKVFVFTGILPICKDEDGLAAVLGHE 235

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

POMBASE|SPAP14E8.04 oma1 "metallopeptidase Oma1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 121 (47.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query:   255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             A S +  L WE+ V+ +P  NAF LPGGK+ VF G+L   + +  +A ++ HE
Sbjct:   144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHE 196

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

SGD|S000001795 OMA1 "Metalloendopeptidase of the mitochondrial inner membrane" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 133 (51.9 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:   257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             S LDG+ WE+ VVN+P    NAF LPGGK+ +F+ +L     D  IAT++ HE
Sbjct:   152 SLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHE 204

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0001997 orf19.3827 [Candida albicans (taxid:5476)]

 Score = 104 (41.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query:    94 LQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAF 153
             L N +T++I      G  +  Y+ NL   PYT R+ F+ +   +E ++G+  ++Q+   F
Sbjct:    39 LTNRKTLYI-----GGGLLGFYVYNLHDAPYTHRSRFIWVPYWLETKIGDYSYRQIYQQF 93

Query:   154 KGKILPAIHPDSVRVRLIAKDIIE 177
             + +ILP  +P   RV  I   +++
Sbjct:    94 QSQILPHSNPLYNRVSTIMNKLLD 117

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

RGD|1304821 Oma1 "zinc metallopeptidase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query:   262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             +NW V VV+ P +NAF LP G++ VFTGLL       +++ ++GHE
Sbjct:   262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHE 307

GO:0002024 "diet induced thermogenesis" evidence=ISO;ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=ISO;ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO;ISS

GO:0006629 "lipid metabolic process" evidence=ISO;ISS

GO:0006950 "response to stress" evidence=ISO;ISS

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO;ISS

GO:0034982 "mitochondrial protein processing" evidence=IEA;ISO

GO:0042407 "cristae formation" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0097009 "energy homeostasis" evidence=ISO;ISS

UNIPROTKB|E1C7A6 OMA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 119 (46.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query:   259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             +  L W + VV+EP +NAF LP G++ VFTGLL       +++ I+GHE
Sbjct:   237 VSALTWAIHVVDEPEVNAFVLPNGEVFVFTGLLNAVSDIHQLSFILGHE 285

GO:0002024 "diet induced thermogenesis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0034982 "mitochondrial protein processing" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|H7BZX2 OMA1 "Metalloendopeptidase OMA1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query:   262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             +NW + VV+ P+INAF LP G++ VFTG L       +++ ++GHE
Sbjct:   125 INWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHE 170

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

DICTYBASE|DDB_G0289335 DDB_G0289335 "Metalloendopeptidase OMA1, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 133 (51.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query:   220 ERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL 279
             E G  E K    D  L +    Q+R +   K +   T   D L WE  VVN  V+NA  L
Sbjct:   397 EMGYEEMKTQLSDYFLPENNALQNRVREVAKRIIDVTDRPD-LAWECHVVNSEVVNACVL 455

Query:   280 PGGKIVVFTGLLEHFRTDAEIATIIGHEDGN 310
             P GKI VF+ L +   ++ E+A++I HE G+
Sbjct:   456 PNGKIFVFSKLFDICESEDELASVISHEIGH 486

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

MGI|MGI:1914263 Oma1 "OMA1 homolog, zinc metallopeptidase (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query:   263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             NW V VV+ P +NAF LP G++ +FTGLL       +++ ++GHE
Sbjct:   280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLGHE 324

GO:0002024 "diet induced thermogenesis" evidence=ISO

GO:0004222 "metalloendopeptidase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IGI

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0034982 "mitochondrial protein processing" evidence=IMP

GO:0042407 "cristae formation" evidence=IGI

GO:0046872 "metal ion binding" evidence=IEA

GO:0097009 "energy homeostasis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038511001 SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (434 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
pfam01435	223	pfam01435, Peptidase_M48, Peptidase family M48	9e-12
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	4e-09
COG0501	302	COG0501, HtpX, Zn-dependent protease with chaperon	8e-09
COG4784	479	COG4784, COG4784, Putative Zn-dependent protease [	9e-08

>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48

 Score = 63.2 bits (154), Expect = 9e-12
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLL 291
           L +  +Q+     +     + ++      WEV VV+ P  NAF L GGK   +VV TGLL
Sbjct: 29  LRNARLQR---VVER---LADSAGAGFPPWEVYVVDSPQPNAFALGGGKNKRVVVTTGLL 82

Query: 292 EHFRTDAEIATIIGHEDG 309
               T+ E+A ++GHE G
Sbjct: 83  LA-LTEDELAAVLGHEIG 99

Length = 223

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDG 309
           A + L    +   +VN+  INAF  PGG +VV TGLL     ++E+A +I HE G
Sbjct: 85  AAADLVKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAENESELAGVIAHEIG 139

Length = 484

>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

 Score = 55.3 bits (133), Expect = 8e-09
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHE 307
           A         EV ++  P  NAF L G    G++VV TGLL+    D E+  ++ HE
Sbjct: 109 ARQAGIPHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHE 164

Length = 302

>gnl|CDD|227123 COG4784, COG4784, Putative Zn-dependent protease [General function prediction only]

 Score = 52.9 bits (127), Expect = 9e-08
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 211 TLRALSENSERGKTEGKWHQE------DEILDDKWVQQSRKKGQEKGLQSATSHLDGLNW 264
           T+  + +N    +   + H         E  D K  +   +     G  +A S      +
Sbjct: 32  TVDNVQKNDPLAQMGARQHPRILATYGGEYRDPKLERMVARIV---GALTAVSENPQQTY 88

Query: 265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDG 309
            + ++N P INAF LPGG + +  GLL      +E+A ++ HE G
Sbjct: 89  RITILNSPNINAFALPGGYLYITRGLLALANDSSEVAAVLAHEMG 133

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
KOG2661	424	consensus Peptidase family M48 [Posttranslational	100.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.8
COG4784	479	Putative Zn-dependent protease [General function p	99.76
COG0501	302	HtpX Zn-dependent protease with chaperone function	99.49
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	99.44
PRK03982	288	heat shock protein HtpX; Provisional	99.38
PRK02870	336	heat shock protein HtpX; Provisional	99.36
PRK01345	317	heat shock protein HtpX; Provisional	99.36
PRK03072	288	heat shock protein HtpX; Provisional	99.29
PRK04897	298	heat shock protein HtpX; Provisional	99.29
PRK03001	283	M48 family peptidase; Provisional	99.28
PRK05457	284	heat shock protein HtpX; Provisional	99.24
PRK02391	296	heat shock protein HtpX; Provisional	99.23
PRK01265	324	heat shock protein HtpX; Provisional	99.2
KOG2719	428	consensus Metalloprotease [General function predic	97.41
PF13203	292	DUF2201_N: Putative metallopeptidase domain	96.91
PF05569	299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	96.25
PF06114	122	DUF955: Domain of unknown function (DUF955); Inter	95.15
PF04228	292	Zn_peptidase: Putative neutral zinc metallopeptida	94.09
smart00731	146	SprT SprT homologues. Predicted to have roles in t	92.97
PF13699	79	DUF4157: Domain of unknown function (DUF4157)	92.65
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	91.73
PRK04351	149	hypothetical protein; Provisional	90.65
PF01863	205	DUF45: Protein of unknown function DUF45; InterPro	90.02
PF12388	211	Peptidase_M57: Dual-action HEIGH metallo-peptidase	88.79
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	87.58
COG4219	337	MecR1 Antirepressor regulating drug resistance, pr	87.54
PF13485	128	Peptidase_MA_2: Peptidase MA superfamily	87.54
PF10026	195	DUF2268: Predicted Zn-dependent protease (DUF2268)	87.16
COG1451	223	Predicted metal-dependent hydrolase [General funct	85.91
COG2856	213	Predicted Zn peptidase [Amino acid transport and m	83.74
COG2321	295	Predicted metalloprotease [General function predic	82.38
PF00413	154	Peptidase_M10: Matrixin This Prosite motif covers	81.32
PRK04860	160	hypothetical protein; Provisional	81.13

>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-55  Score=423.20  Aligned_cols=245  Identities=28%  Similarity=0.420  Sum_probs=224.8

Q ss_pred             ChhhhhhHHHHHHHhh-cccCCCCCCCcccccc-ccccCC----CCCccccccccccceehhhccccccCCCCCCCCcce
Q 020494            1 MAYYRRAKAALDAFRN-LSSKAVPKSPVQESCS-RVYSNG----SANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRY   74 (325)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   74 (325)
                      |.|||+.|+.+|.+++ ++++|.|++....+.+ .+.++.    .+...+.+.+++++.+.-+.+++.-+|+|.+.+.+|
T Consensus        44 ~~~~~~~~~~~~~l~~~~~~~i~~~t~~~t~~n~~~~~~~~~~~~t~v~S~~v~l~~~~~s~Rn~Ng~~y~rFqsnp~~y  123 (424)
T KOG2661|consen   44 HFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLSVLLPLSPASIRNINGHTYPRFQSNPVPY  123 (424)
T ss_pred             eeeeeecchhcccccccCCccceecccccceehhhhhhccchhhhhcccccccccccchhhhhccCccccchhhcCCccH
Confidence            7899999999999999 9999999999987776 333222    344477789999999999999999999999999999


Q ss_pred             EEeecceeeeecCCCCCCcccCCchhHHHHHHHHHHHHHHHhhccCcCCCccchhccCCCHHHHHHHHHHHHHHHHHHhc
Q 020494           75 YYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFK  154 (325)
Q Consensus        75 y~~~~~~~~hf~~rg~~~w~~~~r~~~~~v~~g~g~~~~~y~~~letvP~TgR~rfillS~~~E~~Lge~~y~qil~e~~  154 (325)
                      |+.+++.|+||+|+++.+|++|+|++++++.+|+.++++|||+|+|++|+|||+||+++|.++|+-||+.+|+++++||+
T Consensus       124 s~~~r~~~~sfkpn~~dk~f~n~rk~f~~lf~G~~~~~vfyfthlE~~Pit~Rsrfillskp~ekllge~~ye~im~eyq  203 (424)
T KOG2661|consen  124 SLMIRKWWQSFKPNKKDKVFENIRKNFWKLFLGLLLFVVFYFTHLEVSPITGRSRFILLSKPQEKLLGELEYEAIMEEYQ  203 (424)
T ss_pred             HHHHHHHHHhcCCCCccchhhhHHHHHHHHHhhccceEEEEEeeeeeeccCCcceeeeccCHHHHHhhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999876677899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHhcccccccccccCCCCccccccccchhhhhHHhhhhcccccccccCcccccccc
Q 020494          155 GKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI  234 (325)
Q Consensus       155 ~kiLP~~hp~s~rVr~Ia~rIi~a~~~~l~~~~~~~~~gy~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l  234 (325)
                      ++|||+.||++.+|++|+.+||+++..                                                     
T Consensus       204 ~~mLp~~hp~sl~V~~vlk~iIea~~~-----------------------------------------------------  230 (424)
T KOG2661|consen  204 NDMLPEKHPRSLAVKEVLKHIIEANKD-----------------------------------------------------  230 (424)
T ss_pred             CccCCcCCchhhHHHHHHHHHHHHhcc-----------------------------------------------------
Confidence            999999999999999999999998520                                                     


Q ss_pred             cchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcC
Q 020494          235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRL  314 (325)
Q Consensus       235 l~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalpgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~r  314 (325)
                                           ...+++..|+++||+||.+||||+|||+|||+||+|..|++||+||+|||||+||.++|
T Consensus       231 ---------------------~~slsgIkWeihVVndPipNAFvLPgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaVar  289 (424)
T KOG2661|consen  231 ---------------------VPSLSGIKWEIHVVNDPIPNAFVLPGGKVFVFTGILNSCKDDDGLATVLGHEIAHAVAR  289 (424)
T ss_pred             ---------------------CCcccCceeEEEEecCCCCceeeccCCeEEEEechhhcccChHHHHHHHHHHHHHHHHH
Confidence                                 01256789999999999999999999999999999999999999999999999999999


Q ss_pred             cHHhh
Q 020494          315 YRAAF  319 (325)
Q Consensus       315 H~~~~  319 (325)
                      |++|.
T Consensus       290 H~AEk  294 (424)
T KOG2661|consen  290 HAAEK  294 (424)
T ss_pred             HHHHh
Confidence            99953

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.80  E-value=3.4e-19  Score=178.89  Aligned_cols=118  Identities=29%  Similarity=0.370  Sum_probs=98.7

Q ss_pred             cCCCccchhccCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChh-HHHHHHHHHHHHHHHHhcccccccccccCCCCccc
Q 020494          121 TVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPD-SVRVRLIAKDIIEALQRGLKHETVWSDMGYASTET  199 (325)
Q Consensus       121 tvP~TgR~rfillS~~~E~~Lge~~y~qil~e~~~kiLP~~hp~-s~rVr~Ia~rIi~a~~~~l~~~~~~~~~gy~~~~~  199 (325)
                      ..|.+|....-.+|+++|..+|...+.|+..+  ..++  .||+ ...|+.++++|+++                     
T Consensus        32 ~lp~ig~~~~s~ls~~qev~~g~~~~~Qlr~~--~~~i--~D~el~~yv~~~g~rL~~~---------------------   86 (484)
T COG4783          32 LLPDIGVSAGSTLSPAQEVALGDPANAQLRGS--VPLI--RDPELEEYVNSLGQRLAAA---------------------   86 (484)
T ss_pred             hcchhhhhhhhcCCHHHHHHhhHHHHHHhccC--CCCc--CCHHHHHHHHHHHHHHHHh---------------------
Confidence            46788999999999999999999988877654  2333  3444 44666666666654                     


Q ss_pred             cccccchhhhhHHhhhhcccccccccCcccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEEEe
Q 020494          200 DFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL  279 (325)
Q Consensus       200 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ll~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfal  279 (325)
                                                                               +++++.+++|.+|+|+.+||||+
T Consensus        87 ---------------------------------------------------------a~~~~~~f~f~lV~d~~iNAFA~  109 (484)
T COG4783          87 ---------------------------------------------------------ADLVKTPFTFFLVNDDSINAFAT  109 (484)
T ss_pred             ---------------------------------------------------------cCCCCCCeEEEEecCCccchhhc
Confidence                                                                     33457789999999999999999


Q ss_pred             CCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHhhh
Q 020494          280 PGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFD  320 (325)
Q Consensus       280 pgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~~~  320 (325)
                      |||.|+|+||||-..+||.|||+||||||||+..||.++..
T Consensus       110 ~Gg~v~vntGLll~ae~esElagViAHEigHv~qrH~aR~~  150 (484)
T COG4783         110 PGGYVVVNTGLLLTAENESELAGVIAHEIGHVAQRHLARSM  150 (484)
T ss_pred             CCceEEEehHHHHhcCCHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            99999999999999999999999999999999999998654

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=99.76  E-value=2e-18  Score=168.06  Aligned_cols=123  Identities=23%  Similarity=0.330  Sum_probs=101.3

Q ss_pred             ccCcCCCccchhccCCCHHHHHH-HHHHHHHHHHHHhcCCCCCCCChhHH-HHHHHHHHHHHHHHhcccccccccccCCC
Q 020494          118 NLETVPYTKRTHFVLLSKAVERQ-LGESQFQQMKAAFKGKILPAIHPDSV-RVRLIAKDIIEALQRGLKHETVWSDMGYA  195 (325)
Q Consensus       118 ~letvP~TgR~rfillS~~~E~~-Lge~~y~qil~e~~~kiLP~~hp~s~-rVr~Ia~rIi~a~~~~l~~~~~~~~~gy~  195 (325)
                      .|...|-|+-.-+..+++.++.. ||.++-..|+++|++..   +||-.+ .|.+|+.++..                  
T Consensus        21 ~~~~~Ps~~p~~v~~v~~n~~laqmgar~hprIla~yggeY---~D~Kler~Vari~g~lt~------------------   79 (479)
T COG4784          21 ESGVQPSDNPQTVDNVQKNDPLAQMGARQHPRILATYGGEY---RDPKLERMVARIVGALTA------------------   79 (479)
T ss_pred             ccccCCCCCcchHHHhhccChHhHhhhhhChhHHHhcCCcc---CCHHHHHHHHHHHhHhhh------------------
Confidence            56778999999999999998776 99999999999999765   344433 44444443322                  


Q ss_pred             CccccccccchhhhhHHhhhhcccccccccCcccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCc
Q 020494          196 STETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVIN  275 (325)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ll~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~N  275 (325)
                                                                                  .++-++..|.+.|+|+|.+|
T Consensus        80 ------------------------------------------------------------~S~~p~q~YriTilnSP~IN   99 (479)
T COG4784          80 ------------------------------------------------------------VSENPQQTYRITILNSPNIN   99 (479)
T ss_pred             ------------------------------------------------------------hccCCCceEEEEEecCCCcc
Confidence                                                                        22345778999999999999


Q ss_pred             EEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHhhhh
Q 020494          276 AFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFDR  321 (325)
Q Consensus       276 AfalpgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~~~~  321 (325)
                      ||++|||.++|+.|||.++.+..|+|+||+|||||+.++|..+..+
T Consensus       100 AFALPGGYlYitRGLlAland~sEvAAVl~HEmgHVtAnHgi~rQ~  145 (479)
T COG4784         100 AFALPGGYLYITRGLLALANDSSEVAAVLAHEMGHVTANHGIQRQQ  145 (479)
T ss_pred             ccccCCceEEEehhHHHHcCCHHHHHHHHHhhhhheecchhHHHHH
Confidence            9999999999999999999999999999999999999999985543

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3.6e-14  Score=132.31  Aligned_cols=57  Identities=35%  Similarity=0.510  Sum_probs=53.9

Q ss_pred             CCCeEEEEEeCCCCcEEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHh
Q 020494          261 GLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAA  318 (325)
Q Consensus       261 ~~~w~v~Vv~~~~~NAfalpg----G~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~  318 (325)
                      ...|+++|+++|.+||||+|+    |.|+|++||++.+ |||||++|||||+||+.++|+..
T Consensus       115 ~~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd~~~  175 (302)
T COG0501         115 PHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRHTLV  175 (302)
T ss_pred             CCCCeeEEecCCCccceecCCCCCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhcccHHH
Confidence            457999999999999999999    7999999999976 99999999999999999999986

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=99.44  E-value=1.3e-13  Score=122.89  Aligned_cols=77  Identities=29%  Similarity=0.365  Sum_probs=58.9

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEEEeCCCe---EEEcHhHHhhcCCHHHHHHHHHHHHHHHh
Q 020494          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLLEHFRTDAEIATIIGHEDGNGS  312 (325)
Q Consensus       236 ~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalpgG~---I~V~tGLL~~~~~ddELAaVLaHEiaHv~  312 (325)
                      +++++++.++.      +++..+.....++++|++++.+|||++|+|.   |+|++||++.+ ++|||++|||||+||+.
T Consensus        29 ~~~~L~~~v~~------l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~ll~~~-~~~el~aVlaHElgH~~  101 (226)
T PF01435_consen   29 EDPELRRIVEE------LARRAGLGIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSGLLESL-SEDELAAVLAHELGHIK  101 (226)
T ss_dssp             HHHHHHHHHHH------HHHHHHCTSS--EEEEE--SSEEEEEETTTC--EEEEEHHHHHHS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------HHHHhcCCCCCCeEEEEcCCCCcEEEEccCCCcEEEEeChhhhcc-cHHHHHHHHHHHHHHHH
Confidence            45666666653      2222333455689999999999999999999   99999999765 99999999999999999


Q ss_pred             cCcHHhh
Q 020494          313 RLYRAAF  319 (325)
Q Consensus       313 ~rH~~~~  319 (325)
                      .+|....
T Consensus       102 ~~h~~~~  108 (226)
T PF01435_consen  102 HRHILKS  108 (226)
T ss_dssp             TTHCCCC
T ss_pred             cCCcchH
Confidence            9998654

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

>PRK03982 heat shock protein HtpX; Provisional

Probab=99.38  E-value=1.1e-12  Score=124.82  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=59.9

Q ss_pred             hHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEEEeC----CCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHh
Q 020494          237 DKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEDGNGS  312 (325)
Q Consensus       237 D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalp----gG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~  312 (325)
                      +|++++.+++      +++..+++  ..+++|++++.+|||+++    ++.|+|++||++.+ |+|||++|||||+||+.
T Consensus        67 ~p~L~~~v~~------la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~  137 (288)
T PRK03982         67 APELYRIVER------LAERANIP--KPKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIK  137 (288)
T ss_pred             hHHHHHHHHH------HHHHcCCC--CCeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHH
Confidence            4566666543      23334444  358999999999999994    46789999999998 99999999999999999


Q ss_pred             cCcHHhhh
Q 020494          313 RLYRAAFD  320 (325)
Q Consensus       313 ~rH~~~~~  320 (325)
                      ++|.....
T Consensus       138 ~~h~~~~~  145 (288)
T PRK03982        138 NRDTLIQT  145 (288)
T ss_pred             cCCHHHHH
Confidence            99987554

>PRK02870 heat shock protein HtpX; Provisional

Probab=99.36  E-value=2.9e-12  Score=125.28  Aligned_cols=56  Identities=23%  Similarity=0.326  Sum_probs=51.9

Q ss_pred             CeEEEEEeCCCCcEEEe----CCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHhh
Q 020494          263 NWEVLVVNEPVINAFCL----PGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAF  319 (325)
Q Consensus       263 ~w~v~Vv~~~~~NAfal----pgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~~  319 (325)
                      .++|+|++++.+||||+    +++.|+|++||++.+ ++|||++|||||+||+.++|....
T Consensus       133 ~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHik~~di~~~  192 (336)
T PRK02870        133 MPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLEKL-DRDELQAVMAHELSHIRHGDIRLT  192 (336)
T ss_pred             CCeEEEEcCCCCceEEecCCCCCcEEEEehHHhhhC-CHHHHHHHHHHHHHHHHcccHHHH
Confidence            47999999999999999    478999999999998 999999999999999999998654

>PRK01345 heat shock protein HtpX; Provisional

Probab=99.36  E-value=1.4e-12  Score=126.16  Aligned_cols=76  Identities=18%  Similarity=0.235  Sum_probs=60.5

Q ss_pred             hHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHHHh
Q 020494          237 DKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEDGNGS  312 (325)
Q Consensus       237 D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalpg----G~I~V~tGLL~~~~~ddELAaVLaHEiaHv~  312 (325)
                      +|++.+.+++      ++...+++  ..+|+|++++.+|||+++.    +.|+|++|||+.+ |+|||++||||||||+.
T Consensus        66 ~p~L~~~v~~------La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L-~~dEL~aVlAHElgHi~  136 (317)
T PRK01345         66 APELYRMVRD------LARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRL-SPEEVAGVMAHELAHVK  136 (317)
T ss_pred             CHHHHHHHHH------HHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechHHHhhC-CHHHHHHHHHHHHHHHH
Confidence            4555555543      23445555  3589999999999999953    4799999999998 89999999999999999


Q ss_pred             cCcHHhhhh
Q 020494          313 RLYRAAFDR  321 (325)
Q Consensus       313 ~rH~~~~~~  321 (325)
                      ++|......
T Consensus       137 ~~d~~~~~l  145 (317)
T PRK01345        137 NRDTLTMTI  145 (317)
T ss_pred             cCCHHHHHH
Confidence            999976543

>PRK03072 heat shock protein HtpX; Provisional

Probab=99.29  E-value=6.5e-12  Score=119.97  Aligned_cols=77  Identities=13%  Similarity=0.119  Sum_probs=61.9

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHHH
Q 020494          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEDGNG  311 (325)
Q Consensus       236 ~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalpg----G~I~V~tGLL~~~~~ddELAaVLaHEiaHv  311 (325)
                      +||++.+.+++      ++...+++  ..+++|++++.+|||+.+.    ..|+|++||++.+ ++|||++|||||+||+
T Consensus        68 ~~p~L~~~v~~------la~~~g~p--~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi  138 (288)
T PRK03072         68 QAPAMYRIVRE------LSTAARQP--MPRLYISPTAAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGHELSHV  138 (288)
T ss_pred             hhHHHHHHHHH------HHHHcCCC--CCCEEEecCCCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHHHHHHH
Confidence            46667666653      33445554  4689999999999999952    2499999999998 9999999999999999


Q ss_pred             hcCcHHhhhh
Q 020494          312 SRLYRAAFDR  321 (325)
Q Consensus       312 ~~rH~~~~~~  321 (325)
                      .++|......
T Consensus       139 ~~~d~~~~~~  148 (288)
T PRK03072        139 YNRDILISSV  148 (288)
T ss_pred             hcCCHHHHHH
Confidence            9999887654

>PRK04897 heat shock protein HtpX; Provisional

Probab=99.29  E-value=7.4e-12  Score=119.98  Aligned_cols=77  Identities=19%  Similarity=0.242  Sum_probs=61.9

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHHH
Q 020494          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEDGNG  311 (325)
Q Consensus       236 ~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalpg----G~I~V~tGLL~~~~~ddELAaVLaHEiaHv  311 (325)
                      ++|++.+.+++      ++...+++  ..++++++++.+|||+++.    +.|+|++||++.+ ++|||++|||||+||+
T Consensus        78 ~~p~L~~~v~~------la~~~gip--~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi  148 (298)
T PRK04897         78 EAPELWHIVED------MAMVAQIP--MPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIM-NREELEGVIGHEISHI  148 (298)
T ss_pred             hhHHHHHHHHH------HHHHcCCC--CCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhC-CHHHHHHHHHHHHHHH
Confidence            35666666653      23445554  3589999999999999973    5799999999998 9999999999999999


Q ss_pred             hcCcHHhhhh
Q 020494          312 SRLYRAAFDR  321 (325)
Q Consensus       312 ~~rH~~~~~~  321 (325)
                      .++|....+.
T Consensus       149 ~~~d~~~~~~  158 (298)
T PRK04897        149 RNYDIRLSTI  158 (298)
T ss_pred             hcCCHHHHHH
Confidence            9999876553

>PRK03001 M48 family peptidase; Provisional

Probab=99.28  E-value=8.4e-12  Score=118.39  Aligned_cols=56  Identities=23%  Similarity=0.255  Sum_probs=51.1

Q ss_pred             eEEEEEeCCCCcEEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHhhh
Q 020494          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFD  320 (325)
Q Consensus       264 w~v~Vv~~~~~NAfalpg----G~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~~~  320 (325)
                      .+++|++++.+|||+.+.    +.|+|++||++.+ ++|||++|||||+||+.++|.....
T Consensus        85 p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~~~~~  144 (283)
T PRK03001         85 PKVYLINEDQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDILIST  144 (283)
T ss_pred             CeEEEecCCCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCChHHHH
Confidence            589999999999999964    3599999999988 9999999999999999999998654

>PRK05457 heat shock protein HtpX; Provisional

Probab=99.24  E-value=1.8e-11  Score=116.87  Aligned_cols=64  Identities=23%  Similarity=0.325  Sum_probs=54.2

Q ss_pred             ccccCCCCCCeEEEEEeCCCCcEEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHhhh
Q 020494          254 SATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFD  320 (325)
Q Consensus       254 ~~~s~l~~~~w~v~Vv~~~~~NAfalpg----G~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~~~  320 (325)
                      ++..+++  ..+++|++++.+|||+.+.    +.|+|++||++.+ |+|||++|||||+||+.++|....+
T Consensus        87 a~~~g~p--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlAHElgHi~~~d~~~~~  154 (284)
T PRK05457         87 ARQAGIG--MPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNM-SRDEVEAVLAHEISHIANGDMVTMT  154 (284)
T ss_pred             HHhCCCC--CCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhC-CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3444554  5689999999999999974    3589999999998 9999999999999999999987643

>PRK02391 heat shock protein HtpX; Provisional

Probab=99.23  E-value=2.1e-11  Score=117.15  Aligned_cols=77  Identities=21%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHHH
Q 020494          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEDGNG  311 (325)
Q Consensus       236 ~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalpg----G~I~V~tGLL~~~~~ddELAaVLaHEiaHv  311 (325)
                      ++|++.+.++.      ++...+++  ..+++|++++.+|||+.+.    +.|+|++||++.+ |+|||++|||||+||+
T Consensus        74 ~~p~L~~~v~~------la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlaHElgHi  144 (296)
T PRK02391         74 EYPELHAMVER------LCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRL-DPDELEAVLAHELSHV  144 (296)
T ss_pred             hCHHHHHHHHH------HHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHHHHhhC-CHHHHHHHHHHHHHHH
Confidence            35566655543      23444554  3589999999999999963    3599999999998 8999999999999999


Q ss_pred             hcCcHHhhhh
Q 020494          312 SRLYRAAFDR  321 (325)
Q Consensus       312 ~~rH~~~~~~  321 (325)
                      .++|......
T Consensus       145 ~~~di~~~~i  154 (296)
T PRK02391        145 KNRDVAVMTI  154 (296)
T ss_pred             HcCCHHHHHH
Confidence            9999876543

>PRK01265 heat shock protein HtpX; Provisional

Probab=99.20  E-value=3.7e-11  Score=117.07  Aligned_cols=75  Identities=21%  Similarity=0.274  Sum_probs=60.1

Q ss_pred             hHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEEEeC----CCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHh
Q 020494          237 DKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEDGNGS  312 (325)
Q Consensus       237 D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalp----gG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~  312 (325)
                      ++++.+.+++      ++...+++  ..+++|++++.+||||.+    ++.|+|++||++.+ ++|||.+|||||+||+.
T Consensus        82 ~~~L~~~v~~------la~~~g~~--~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHik  152 (324)
T PRK01265         82 YGWLYSIVAE------VAKYNGIR--VPKVYIADVPFPNAFAYGSPIAGKRIAITLPLLKIL-NRDEIKAVAGHELGHLK  152 (324)
T ss_pred             cHHHHHHHHH------HHHHcCCC--CCeEEEecCCCCCeEEeccCCCCCEEEEehHHHhhC-CHHHHHHHHHHHHHHHH
Confidence            4555555543      23344554  468999999999999963    46899999999998 99999999999999999


Q ss_pred             cCcHHhhh
Q 020494          313 RLYRAAFD  320 (325)
Q Consensus       313 ~rH~~~~~  320 (325)
                      ++|.....
T Consensus       153 ~~d~~~~~  160 (324)
T PRK01265        153 HRDVELLM  160 (324)
T ss_pred             cccHHHHH
Confidence            99997654

>KOG2719 consensus Metalloprotease [General function prediction only]

Probab=97.41  E-value=0.00027  Score=71.63  Aligned_cols=57  Identities=21%  Similarity=0.217  Sum_probs=45.7

Q ss_pred             EEEEEeC--C--CCcEEEeCC---CeEEEcHhHH--hhcCCHHHHHHHHHHHHHHHhcCcHHhhhh
Q 020494          265 EVLVVNE--P--VINAFCLPG---GKIVVFTGLL--EHFRTDAEIATIIGHEDGNGSRLYRAAFDR  321 (325)
Q Consensus       265 ~v~Vv~~--~--~~NAfalpg---G~I~V~tGLL--~~~~~ddELAaVLaHEiaHv~~rH~~~~~~  321 (325)
                      +++|++.  +  ..||+-.+=   -.|++|.-|+  +...|+||++||+|||+||-.++|..+...
T Consensus       236 k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~~~eel~AVl~HELGHW~~~H~~K~~i  301 (428)
T KOG2719|consen  236 KYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHLNNEELVAVLAHELGHWKLNHVLKNII  301 (428)
T ss_pred             EEEEEecCCCCCCCCeeeeeccccceEEEehhhhhhhhccccHHHHHHHHHHhhHHHHhhHHHHHH
Confidence            5777772  2  489998864   3699999999  332389999999999999999999987653

>PF13203 DUF2201_N: Putative metallopeptidase domain

Probab=96.91  E-value=0.0016  Score=61.78  Aligned_cols=55  Identities=15%  Similarity=0.027  Sum_probs=47.6

Q ss_pred             EEEEEeCCCCcEEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHhhh
Q 020494          265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFD  320 (325)
Q Consensus       265 ~v~Vv~~~~~NAfalpgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~~~  320 (325)
                      .+.++.++.+..++..|..|+++-..+..+ +.+|+.+||+||+-|++.+|..+..
T Consensus        26 ~l~~~~~~~~~t~~tDg~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~r~~   80 (292)
T PF13203_consen   26 SLPPVEDDGIPTAATDGRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPWRRG   80 (292)
T ss_pred             hCeeeeCCCCceeeEcCcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchhhhc
Confidence            344555788889999999999999999887 8999999999999999999987543

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.25  E-value=0.0064  Score=57.75  Aligned_cols=52  Identities=21%  Similarity=0.195  Sum_probs=41.4

Q ss_pred             EEEEeCC-CCcEEEeCC--CeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHh
Q 020494          266 VLVVNEP-VINAFCLPG--GKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAA  318 (325)
Q Consensus       266 v~Vv~~~-~~NAfalpg--G~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~  318 (325)
                      +.++.++ ....|+++-  .+|++..++++.+ +++|+..||.||++|+..+|..-
T Consensus       160 ~~i~~s~~i~sP~~~G~~~p~I~lP~~~~~~~-~~~el~~il~HEl~Hikr~D~~~  214 (299)
T PF05569_consen  160 IRIRVSSGISSPFVFGFLRPVIVLPESLLEDL-SEEELRAILLHELAHIKRRDLLW  214 (299)
T ss_pred             eEEEEcCCCCCCeeecCcceEEEecCcccccc-CHHHHHHHHHHHHHHHHCCChHH
Confidence            3344443 346777643  5899999999887 99999999999999999999763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.

>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function

Probab=95.15  E-value=0.041  Score=43.45  Aligned_cols=50  Identities=14%  Similarity=0.143  Sum_probs=32.3

Q ss_pred             eEEEEEeCCC--CcEEEeC---CCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHh
Q 020494          264 WEVLVVNEPV--INAFCLP---GGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAA  318 (325)
Q Consensus       264 w~v~Vv~~~~--~NAfalp---gG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~  318 (325)
                      .+|...+...  ...++.+   .+.|+|++.     .++.+...+|+||+||+..+|...
T Consensus         6 i~v~~~~~~~~~~~~~~~~~~~~~~I~in~~-----~~~~~~~f~laHELgH~~~~~~~~   60 (122)
T PF06114_consen    6 IDVVYTDLGPKDLGGFSIPKENNPIIFINSN-----LSPERQRFTLAHELGHILLHHGDE   60 (122)
T ss_dssp             -EEEEE--TT--EEEETT----TTEEEEESS-----S-HHHHHHHHHHHHHHHHHHH-HH
T ss_pred             EEEEEEcCCCCCcCEEEEecCcCCEEEECCC-----CCHHHHHHHHHHHHHHHHhhhccc
Confidence            4555555443  3344443   568888876     368888999999999999998764

A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.

>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases

Probab=94.09  E-value=0.045  Score=53.35  Aligned_cols=44  Identities=18%  Similarity=0.283  Sum_probs=33.1

Q ss_pred             CCcEEEeCC-CeEEEcHhHHhhcC------CHHHHHHHHHHHHHHHhcCcH
Q 020494          273 VINAFCLPG-GKIVVFTGLLEHFR------TDAEIATIIGHEDGNGSRLYR  316 (325)
Q Consensus       273 ~~NAfalpg-G~I~V~tGLL~~~~------~ddELAaVLaHEiaHv~~rH~  316 (325)
                      ..|||=+|. .+|++-..+++.+.      .+-..+.|||||.||.+....
T Consensus       136 ~~gpFYCp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAHEyGHHVQ~l~  186 (292)
T PF04228_consen  136 ATGPFYCPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAHEYGHHVQNLL  186 (292)
T ss_pred             CCCCEeCCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHh
Confidence            457775565 79999998876553      244567899999999988765

The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.

>smart00731 SprT SprT homologues

Probab=92.97  E-value=0.14  Score=44.36  Aligned_cols=39  Identities=13%  Similarity=0.054  Sum_probs=33.0

Q ss_pred             CCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhc-------CcHHhhh
Q 020494          281 GGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSR-------LYRAAFD  320 (325)
Q Consensus       281 gG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~-------rH~~~~~  320 (325)
                      .+.|.++.-|++.. .+++|..||.|||+|+..       .|..++.
T Consensus        41 ~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~~~~g~~~~Hg~~f~   86 (146)
T smart00731       41 SAEIRLNPKLLTEN-GRDRLRETLLHELCHAALYLFGRGYGHGDEWK   86 (146)
T ss_pred             CCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHHHHhCCCCCcCHHHH
Confidence            68999999999864 789999999999999998       5776543

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PF13699 DUF4157: Domain of unknown function (DUF4157)

Probab=92.65  E-value=0.068  Score=42.41  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=28.8

Q ss_pred             CCcEEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcC
Q 020494          273 VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRL  314 (325)
Q Consensus       273 ~~NAfalpgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~r  314 (325)
                      ...||++ |+.|++-.|-...  +..+=..+|+||++|++..
T Consensus        37 ~A~A~T~-G~~I~f~~g~~~~--~s~~~~~llaHEl~Hv~Qq   75 (79)
T PF13699_consen   37 GARAFTV-GNDIYFAPGKYNP--DSPEGRALLAHELAHVVQQ   75 (79)
T ss_pred             CCeEEEE-CCEEEEcCCCcCC--CCCCcchhHhHHHHHHHhh
Confidence            4678887 7899998776553  2233457899999999753

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=91.73  E-value=0.27  Score=42.16  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=28.9

Q ss_pred             eEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCc
Q 020494          283 KIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLY  315 (325)
Q Consensus       283 ~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH  315 (325)
                      .|.++.-+++. .+++++..+|.|||+|+...+
T Consensus        44 ~I~ls~~~~~~-~~~~~~~~tL~HEm~H~~~~~   75 (157)
T PF10263_consen   44 EIRLSPKLLDR-NPEEELIDTLLHEMAHAAAYV   75 (157)
T ss_pred             EEEECHHHHHh-hHHHHHHHHHHHHHHHHHhhh
Confidence            79999999997 489999999999999998843

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>PRK04351 hypothetical protein; Provisional

Probab=90.65  E-value=0.38  Score=42.57  Aligned_cols=33  Identities=27%  Similarity=0.240  Sum_probs=28.7

Q ss_pred             eCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHh
Q 020494          279 LPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGS  312 (325)
Q Consensus       279 lpgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~  312 (325)
                      +....|-++.-+++.. .+++|..||.||++|+.
T Consensus        41 l~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~~   73 (149)
T PRK04351         41 LKDHHIEFNPKMLEEY-GLEELIGIIKHELCHYH   73 (149)
T ss_pred             cCCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHHH
Confidence            4567899999999864 89999999999999984

>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori

Probab=90.02  E-value=0.37  Score=42.84  Aligned_cols=54  Identities=15%  Similarity=0.053  Sum_probs=41.6

Q ss_pred             eEEEEEeCCCCcEEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHh-cCcHHhh
Q 020494          264 WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGS-RLYRAAF  319 (325)
Q Consensus       264 w~v~Vv~~~~~NAfalpgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~-~rH~~~~  319 (325)
                      -++.|-+...--.-|...|.|-++.-|+.  ..++-+..|+.||++|.. .+|..++
T Consensus       130 ~~i~ir~~ksrWGsc~~~~~I~ln~~L~~--~P~~~idYVvvHEL~Hl~~~nHs~~F  184 (205)
T PF01863_consen  130 PKIKIRDMKSRWGSCSSKGNITLNWRLVM--APPEVIDYVVVHELCHLRHPNHSKRF  184 (205)
T ss_pred             ceEEEeehhhccccCCCCCcEEeeccccc--CCccHHHHHHHHHHHHhccCCCCHHH
Confidence            35666666666666855799999999988  388899999999999995 4555554

The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.

>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57

Probab=88.79  E-value=0.29  Score=45.90  Aligned_cols=38  Identities=26%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             CCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHh-cCcHHhhh
Q 020494          280 PGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGS-RLYRAAFD  320 (325)
Q Consensus       280 pgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~-~rH~~~~~  320 (325)
                      |++.|.| .|+-.  .+-+.++.||.|||||.+ .||+-.++
T Consensus       116 P~~~I~I-~~~~~--~~~~~~~hvi~HEiGH~IGfRHTD~~~  154 (211)
T PF12388_consen  116 PYKFIQI-YGLSN--YSVNVIEHVITHEIGHCIGFRHTDYFN  154 (211)
T ss_pred             CCceEEE-EecCC--CchhHHHHHHHHHhhhhccccccCcCC
Confidence            4567888 45533  267889999999999987 68875444

The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=87.58  E-value=1.5  Score=40.75  Aligned_cols=34  Identities=15%  Similarity=0.114  Sum_probs=29.1

Q ss_pred             CeEEEcHhHHhhcCC----HHHHHHHHHHHHHHHhcCc
Q 020494          282 GKIVVFTGLLEHFRT----DAEIATIIGHEDGNGSRLY  315 (325)
Q Consensus       282 G~I~V~tGLL~~~~~----ddELAaVLaHEiaHv~~rH  315 (325)
                      ..|.+++..|....+    .+|+.+||-|||.|+...-
T Consensus        74 ~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~  111 (205)
T PF04450_consen   74 KEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWD  111 (205)
T ss_pred             cEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcC
Confidence            689999999997753    3699999999999998754

>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]

Probab=87.54  E-value=1.1  Score=44.73  Aligned_cols=43  Identities=30%  Similarity=0.211  Sum_probs=36.7

Q ss_pred             CcEEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHH
Q 020494          274 INAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRA  317 (325)
Q Consensus       274 ~NAfalpgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~  317 (325)
                      +=.|-++-..|++-+.+.+.+ +++|+.-|++||.+|+..++..
T Consensus       165 P~v~gl~kp~IvlP~d~~~r~-~~ee~~yIilHEl~Hlk~gD~i  207 (337)
T COG4219         165 PMVFGLVKPCIVLPADFVERL-TDEELKYIILHELSHLKRGDAI  207 (337)
T ss_pred             ceeeccCcceEEccHHHHhhc-CHHhhhhhHhHHHhhhhcccHH
Confidence            444555557899999999998 9999999999999999988864

>PF13485 Peptidase_MA_2: Peptidase MA superfamily

Probab=87.54  E-value=0.47  Score=37.67  Aligned_cols=23  Identities=9%  Similarity=-0.048  Sum_probs=19.4

Q ss_pred             CCHHHHHHHHHHHHHHHhcCcHH
Q 020494          295 RTDAEIATIIGHEDGNGSRLYRA  317 (325)
Q Consensus       295 ~~ddELAaVLaHEiaHv~~rH~~  317 (325)
                      .+++.+..||+||++|.......
T Consensus        20 ~~~~~~~~~l~HE~~H~~~~~~~   42 (128)
T PF13485_consen   20 SDEDWLDRVLAHELAHQWFGNYF   42 (128)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHc
Confidence            57888899999999999876654

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function

Probab=87.16  E-value=1.1  Score=40.73  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=25.4

Q ss_pred             CeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCc
Q 020494          282 GKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLY  315 (325)
Q Consensus       282 G~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH  315 (325)
                      |+|+++-  +..-.+.++|.++||||.-|+..-.
T Consensus        49 ~~i~l~~--~~~~~~~~~l~~~iaHE~hH~~r~~   80 (195)
T PF10026_consen   49 GYIFLFL--LPNDYSLEELPALIAHEYHHNCRYE   80 (195)
T ss_pred             CEEEEEe--cCCcccHHHHHHHHHHHHHHHHHHh
Confidence            5788775  4544588999999999999997544

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]

Probab=85.91  E-value=1.5  Score=41.22  Aligned_cols=49  Identities=16%  Similarity=0.090  Sum_probs=38.4

Q ss_pred             EEEEeCCCCcEEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcH
Q 020494          266 VLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYR  316 (325)
Q Consensus       266 v~Vv~~~~~NAfalpgG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~  316 (325)
                      +.+-+-...-+-|...|.|.++.-|..  ..++.|..|+.||++|....++
T Consensus       143 ~~ik~~k~~WGScs~~~~i~~~~~l~~--~p~~~i~YVvvHELaHLke~nH  191 (223)
T COG1451         143 IKLKNMKRRWGSCSKAGEIRFNWRLVM--APEEVIDYVVVHELAHLKEKNH  191 (223)
T ss_pred             eeeeeccceeeeecCCCcEEeehhhhc--CCHHHHHHHHHHHHHHHhhhhc
Confidence            333355567788888898888887776  3899999999999999986654

>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]

Probab=83.74  E-value=1  Score=42.10  Aligned_cols=30  Identities=13%  Similarity=0.026  Sum_probs=23.3

Q ss_pred             CeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcH
Q 020494          282 GKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYR  316 (325)
Q Consensus       282 G~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~  316 (325)
                      +.|++++-     .+++.-.++||||+||++++-.
T Consensus        59 ~~I~iN~n-----~~~~r~rFtlAHELGH~llH~~   88 (213)
T COG2856          59 PVIYINAN-----NSLERKRFTLAHELGHALLHTD   88 (213)
T ss_pred             ceEEEeCC-----CCHHHHHHHHHHHHhHHHhccc
Confidence            57777653     3777888999999999987644

>COG2321 Predicted metalloprotease [General function prediction only]

Probab=82.38  E-value=1.2  Score=43.54  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             EEEeCC-CeEEEcHhHHhhcC------CHHHHHHHHHHHHHHHhcC
Q 020494          276 AFCLPG-GKIVVFTGLLEHFR------TDAEIATIIGHEDGNGSRL  314 (325)
Q Consensus       276 Afalpg-G~I~V~tGLL~~~~------~ddELAaVLaHEiaHv~~r  314 (325)
                      -|-+|+ .++++...+++.|+      .|=.-|.|+|||++|++.+
T Consensus       136 PFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGHHVQn  181 (295)
T COG2321         136 PFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGHHVQN  181 (295)
T ss_pred             CeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhHHHHH
Confidence            455566 79999999999875      4556679999999998764

>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site

Probab=81.32  E-value=1  Score=37.98  Aligned_cols=21  Identities=14%  Similarity=0.150  Sum_probs=16.6

Q ss_pred             CHHHHHHHHHHHHHHHh-cCcH
Q 020494          296 TDAEIATIIGHEDGNGS-RLYR  316 (325)
Q Consensus       296 ~ddELAaVLaHEiaHv~-~rH~  316 (325)
                      +..++..|+.|||||++ +.|.
T Consensus       101 ~~~~~~~v~~HEiGHaLGL~H~  122 (154)
T PF00413_consen  101 SGNDLQSVAIHEIGHALGLDHS  122 (154)
T ss_dssp             SSEEHHHHHHHHHHHHTTBESS
T ss_pred             hhhhhhhhhhhccccccCcCcC
Confidence            55578899999999995 4554

; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....

>PRK04860 hypothetical protein; Provisional

Probab=81.13  E-value=1.7  Score=38.90  Aligned_cols=34  Identities=21%  Similarity=0.068  Sum_probs=27.6

Q ss_pred             CCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCc
Q 020494          281 GGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLY  315 (325)
Q Consensus       281 gG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH  315 (325)
                      .+.|-++--++..- .+++|..||.||++|+....
T Consensus        45 ~~~I~~Np~ll~~~-~~~~l~~~v~HEl~H~~~~~   78 (160)
T PRK04860         45 SNEIRLNPVLLLEN-QQAFIDEVVPHELAHLLVYQ   78 (160)
T ss_pred             cCCeeeCHHHHhhC-cHHHHHhHHHHHHHHHHHHH
Confidence            36677887777764 89999999999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
3c37_A	253	X-ray Structure Of The Putative Zn-dependent Peptid		2e-04

>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase Q74d82 At The Resolution 1.7 A. Northeast Structural Genomics Consortium Target Gsr143a Length = 253

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 268 VVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           VV +  +NAF +PGG++ V TGLL+    + E+A ++ HE
Sbjct: 68  VVKDDSVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHE 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	8e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253

 Score = 83.2 bits (206), Expect = 8e-19
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 254 SATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
            + +     ++   VV +  +NAF +PGG++ V TGLL+    + E+A ++ HE
Sbjct: 54  LSGARAVEFDYVFKVVKDDSVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHE 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 6e-10
 Identities = 43/325 (13%), Positives = 85/325 (26%), Gaps = 105/325 (32%)

Query: 8   KAALDAFRNLSSKAVPKSPVQES--CSRVY-------SNGSANSAKFSSGF--YSYSCIS 56
           K   D  +++ SK      +      S          S       KF       +Y  + 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 57  QRLRNSYCNPNFNTAKRYYYVDRYH------VQHFRPRGP-----RKWLQNPRTVFIVVV 105
             ++     P+  T       DR +       ++   R       R+ L   R    V++
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 106 IGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDS 165
            G                                         +  +  GK        +
Sbjct: 156 DG-----------------------------------------VLGS--GK--------T 164

Query: 166 VRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTE 225
                +       +Q  +  +  W ++   ++    +       + L+ L    +   T 
Sbjct: 165 WVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTS 215

Query: 226 GKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVL--VVNEPVINAF---CLP 280
              H  +  L    +Q   ++     L  +  + + L   VL  V N    NAF   C  
Sbjct: 216 RSDHSSNIKLRIHSIQAELRR-----LLKSKPYENCL--LVLLNVQNAKAWNAFNLSC-- 266

Query: 281 GGKIVVFTGLLEHFRTDAEIATIIG 305
             KI++ T      R   ++   + 
Sbjct: 267 --KILLTT------R-FKQVTDFLS 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	99.93
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	99.61
4aw6_A	482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	98.67
3dte_A	301	IRRE protein; radiotolerance, gene regulation, met	91.4
1r1h_A	696	Neprilysin; enkephalinase, glycoprotein, metallopr	81.0
3dwb_A	670	ECE-1, endothelin-converting enzyme 1; protein, di	80.8

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=99.93  E-value=1.4e-25  Score=206.95  Aligned_cols=117  Identities=22%  Similarity=0.357  Sum_probs=96.4

Q ss_pred             CCCccchhccCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChh-HHHHHHHHHHHHHHHHhcccccccccccCCCCcccc
Q 020494          122 VPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPD-SVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETD  200 (325)
Q Consensus       122 vP~TgR~rfillS~~~E~~Lge~~y~qil~e~~~kiLP~~hp~-s~rVr~Ia~rIi~a~~~~l~~~~~~~~~gy~~~~~~  200 (325)
                      +|.|||+|++++|+++|.++|++.++++.++++  +  ..+|. ..+|++|++++...+                     
T Consensus         3 ~~~tgr~~~~~~s~~~e~~lg~~~~~~~~~~~~--~--~~d~~l~~~l~~l~~~l~~~~---------------------   57 (253)
T 3c37_A            3 TSMTDIKGFNMISIEQEKELGNKFAVEIEKQQQ--P--VNDPEVQRYVDKVGKRLLSGA---------------------   57 (253)
T ss_dssp             ------CCCCCCCHHHHHHHHHHHHHHHHTTCC--B--CCCHHHHHHHHHHHHHHHHTS---------------------
T ss_pred             cCCCCchhhccCCHHHHHHHHHHHHHHHHHhCC--C--CCCHHHHHHHHHHHHHHHHhC---------------------
Confidence            477999999999999999999999999988764  3  34564 678998888886531                     


Q ss_pred             ccccchhhhhHHhhhhcccccccccCcccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEEEeC
Q 020494          201 FVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP  280 (325)
Q Consensus       201 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ll~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalp  280 (325)
                                                                               +.+..+|+|+|++++.+||||+|
T Consensus        58 ---------------------------------------------------------~~~~~~~~v~v~~~~~~NAfa~~   80 (253)
T 3c37_A           58 ---------------------------------------------------------RAVEFDYVFKVVKDDSVNAFAIP   80 (253)
T ss_dssp             ---------------------------------------------------------SCCCSCCEEEEECCCSCCEEEET
T ss_pred             ---------------------------------------------------------CCCCCCeEEEEEeCCCCCeeEcC
Confidence                                                                     11345899999999999999999


Q ss_pred             CCeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHhhh
Q 020494          281 GGKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFD  320 (325)
Q Consensus       281 gG~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~~~  320 (325)
                      ||+|+|++|||+.++|+|||++||||||||+..+|..+..
T Consensus        81 gg~I~v~~gLl~~l~~~~ELaaVLaHElgH~~~~H~~~~~  120 (253)
T 3c37_A           81 GGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTRQM  120 (253)
T ss_dssp             TTEEEEEHHHHHHCSSHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCeEEeeHHHHhhCCCHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            9999999999999999999999999999999999998653

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.61  E-value=1.6e-15  Score=123.77  Aligned_cols=56  Identities=25%  Similarity=0.281  Sum_probs=51.4

Q ss_pred             eEEEEEeCCCCcEEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHHhhh
Q 020494          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRAAFD  320 (325)
Q Consensus       264 w~v~Vv~~~~~NAfalpg----G~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~~~~  320 (325)
                      ++++|++++.+||||+|+    +.|+|++|||+.+ ++|||++|||||+||+..+|.....
T Consensus        44 ~~v~v~~~~~~NAf~~g~~~~~~~i~v~~gLl~~l-~~~El~aVlaHElgH~~~~h~~~~~  103 (107)
T 3cqb_A           44 PTVAIYDSADINAFATGAKRDDSLVAVSTGLLHNM-TRDEAEAVLAHEVSHIANGDMVTMT  103 (107)
T ss_dssp             CEEEEECCSSEEEEEECCC--CCEEEEEHHHHHHS-CHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEECCCcCEEEEecCCCCCEEEEcHHHHhhC-CHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            699999999999999985    4599999999999 9999999999999999999987543

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A

Probab=98.67  E-value=2.5e-08  Score=100.43  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=57.2

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEe----CCCCcEEEeCC---CeEEEcHhHHhh---------------
Q 020494          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVN----EPVINAFCLPG---GKIVVFTGLLEH---------------  293 (325)
Q Consensus       236 ~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~----~~~~NAfalpg---G~I~V~tGLL~~---------------  293 (325)
                      +|+++.+.++.      +++..+.+  -.+++|++    ++..|||+.+-   ..|++++.|++.               
T Consensus       230 ~dg~L~~~Ie~------la~~~~fp--~~~v~vv~gSkRs~~~NAy~~G~~~~krIVl~dtLl~~~~~~~~~~~~~~~~~  301 (482)
T 4aw6_A          230 PEGKLKEEIEV------MAKSIDFP--LTKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGME  301 (482)
T ss_dssp             CSSHHHHHHHH------HHHHTTCC--EEEEEEECGGGTBSCCCEEEEESSSCEEEEEEHHHHC----------------
T ss_pred             CcHHHHHHHHH------HHHHcCCC--CCcEEEEeCCCCCCCCceEEEcCCCCcEEEEEchHHHhccccccccccccccc
Confidence            44555555543      22333333  36999999    78899999864   369999999987               


Q ss_pred             ----------------------cCCHHHHHHHHHHHHHHHhcCcHHhhh
Q 020494          294 ----------------------FRTDAEIATIIGHEDGNGSRLYRAAFD  320 (325)
Q Consensus       294 ----------------------~~~ddELAaVLaHEiaHv~~rH~~~~~  320 (325)
                                            | ++|||++|||||+||+.++|.....
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~l-~~~El~aVlaHElgH~~~~~~~~~~  349 (482)
T 4aw6_A          302 PRNEEEGNSEEIKAKVKNKKQGC-KNEEVLAVLGHELGHWKLGHTVKNI  349 (482)
T ss_dssp             --------------------CCC-CHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             ccccccccchhhcccchhhccCC-CHHHHHHHHHHHHHHHHcccHHHHH
Confidence                                  5 8999999999999999999988664

>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A

Probab=91.40  E-value=0.23  Score=47.14  Aligned_cols=48  Identities=10%  Similarity=0.016  Sum_probs=34.3

Q ss_pred             EEEEEeCCCCcEEEeCC-CeEEEcHhHHhhcCCHHHHHHHHHHHHHHHhcCcHH
Q 020494          265 EVLVVNEPVINAFCLPG-GKIVVFTGLLEHFRTDAEIATIIGHEDGNGSRLYRA  317 (325)
Q Consensus       265 ~v~Vv~~~~~NAfalpg-G~I~V~tGLL~~~~~ddELAaVLaHEiaHv~~rH~~  317 (325)
                      .|...+-+....+..++ ..|+|+..+     +++...+.||||+||++++|..
T Consensus        65 ~V~~~~L~~~~G~~~~~~~~I~LN~~~-----~~~rqrFTLAHELGHllLh~~~  113 (301)
T 3dte_A           65 TLTFMPMGQRDGAYDPEHHVILINSQV-----RPERQRFTLAHEISHALLLGDD  113 (301)
T ss_dssp             EEEEECCTTCCEEEETTTTEEEEETTS-----CHHHHHHHHHHHHHHHHHHHCH
T ss_pred             EEEEEcCCCCCEEEECCCcEEEEcCCC-----ChhhHHHHHHHHHHHHHhcccc
Confidence            44444444445666665 468887752     7889999999999999998754

>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*

Probab=81.00  E-value=0.75  Score=47.49  Aligned_cols=47  Identities=36%  Similarity=0.541  Sum_probs=35.7

Q ss_pred             CCcEEEeCC-CeEEEcHhHHh--hcC-------CHHHHHHHHHHHHHHHhcCcHHhh
Q 020494          273 VINAFCLPG-GKIVVFTGLLE--HFR-------TDAEIATIIGHEDGNGSRLYRAAF  319 (325)
Q Consensus       273 ~~NAfalpg-G~I~V~tGLL~--~~~-------~ddELAaVLaHEiaHv~~rH~~~~  319 (325)
                      .+|||-.|. +.|+|-.|+|.  ...       +=..|.+||||||+|..-..+.+.
T Consensus       487 ~vNA~Y~p~~N~I~~Pa~iLq~Pff~~~~~~a~nyg~iG~vigHEi~H~FD~~G~~~  543 (696)
T 1r1h_A          487 VVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNF  543 (696)
T ss_dssp             CSCCEEETTTTEEEEEGGGSSTTTCCTTSCHHHHHHTHHHHHHHHHHGGGSTTTTSB
T ss_pred             ceeeEEcCcCCEEEeeHHHhCCcccCccccHHHHhhHHHHHHHHHHHHHhhhhhheE
Confidence            699999886 68999999995  221       234688999999999976655443

>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0

Probab=80.80  E-value=0.91  Score=46.83  Aligned_cols=48  Identities=25%  Similarity=0.463  Sum_probs=36.4

Q ss_pred             CCCcEEEeCC-CeEEEcHhHHhh--cC-------CHHHHHHHHHHHHHHHhcCcHHhh
Q 020494          272 PVINAFCLPG-GKIVVFTGLLEH--FR-------TDAEIATIIGHEDGNGSRLYRAAF  319 (325)
Q Consensus       272 ~~~NAfalpg-G~I~V~tGLL~~--~~-------~ddELAaVLaHEiaHv~~rH~~~~  319 (325)
                      ..+|||=.|. +.|+|-.|+|..  ..       +=..|.+||||||+|..-..+.+.
T Consensus       463 ~~vnAyY~p~~N~I~fPa~iLq~Pff~~~~p~a~nyg~iG~vigHEi~H~FD~~G~~~  520 (670)
T 3dwb_A          463 PMVNAYYSPTKNEIVFPAGILQAPFYTRSSPKALNFGGIGVVVGHELTHAFDDQGREY  520 (670)
T ss_dssp             TCSCCEEETTTTEEEEEGGGSSTTTCCTTSCHHHHHHTHHHHHHHHHHHTTSTTGGGB
T ss_pred             ceeEEEeccccccccccHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhccCcccceE
Confidence            3699998886 689999999862  21       234688999999999987665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	84.01
d1r55a_	203	ADAM33 {Human (Homo sapiens) [TaxId: 9606]}	82.02

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.01  E-value=0.21  Score=38.83  Aligned_cols=18  Identities=17%  Similarity=0.100  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHh-cCcH
Q 020494          299 EIATIIGHEDGNGS-RLYR  316 (325)
Q Consensus       299 ELAaVLaHEiaHv~-~rH~  316 (325)
                      -+..|+.|||||++ +.|.
T Consensus       116 ~~~~v~~HEiGHaLGL~H~  134 (169)
T d1rm8a_         116 DLFLVAVHELGHALGLEHS  134 (169)
T ss_dssp             EHHHHHHHHHHHHHTCCCC
T ss_pred             hhhhhhhhhhhhhhcCCCC
Confidence            36799999999997 3443

>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: ADAM33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.02  E-value=0.34  Score=39.73  Aligned_cols=18  Identities=22%  Similarity=0.222  Sum_probs=14.4

Q ss_pred             CHHHHHHHHHHHHHHHhc
Q 020494          296 TDAEIATIIGHEDGNGSR  313 (325)
Q Consensus       296 ~ddELAaVLaHEiaHv~~  313 (325)
                      ..-..|.|+||||||..-
T Consensus       128 ~~~~~a~v~AHElGH~lG  145 (203)
T d1r55a_         128 LPIGAAATMAHEIGHSLG  145 (203)
T ss_dssp             SHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHhcC
Confidence            345678899999999864