BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020495
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SZZ0|BRX1_BOVIN Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1
PE=2 SV=1
Length = 353
Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 165/230 (71%), Gaps = 14/230 (6%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE++L+ SR INFR RHLM ++ L+PH K D K++ K K +NE+ E+K+C
Sbjct: 54 GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP+GPS KFLV +HT+ ELK+TGN LK SRPLL+F F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
+ H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI E D
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R+V+
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVI 269
>sp|Q8TDN6|BRX1_HUMAN Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1
PE=1 SV=2
Length = 353
Score = 258 bits (658), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 165/230 (71%), Gaps = 14/230 (6%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE++L+ SR INFR RHLM ++ L+PH K D K++ K K +NE+ E+K+C
Sbjct: 54 GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP+GPS KFLV +HT+ ELK+TGN LK SRPLL+F F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
+ H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI E D
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R+V+
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVI 269
>sp|Q8UVY2|BRX1_XENLA Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1
PE=2 SV=1
Length = 339
Score = 257 bits (657), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 122/250 (48%), Positives = 170/250 (68%), Gaps = 14/250 (5%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE+VL+ SR INFR RHLM ++ SL+PH + + K++ K K +NE+ E+K+C
Sbjct: 47 GKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNC 105
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP GPS KFLV +HT+ ELK++GN LK SRP+L+F F
Sbjct: 106 NKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAF 165
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
++ + L+KE++ QIFGTP+ H +S+P+ DH+F FSI D+ IWFRNYQI E D
Sbjct: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EED-- 219
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKS 284
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R+++ + K
Sbjct: 220 -------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAKVKE 272
Query: 285 LCSICIVDKI 294
+ V K+
Sbjct: 273 KQQVKEVQKL 282
>sp|Q9DCA5|BRX1_MOUSE Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1
PE=2 SV=3
Length = 353
Score = 257 bits (656), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 128/259 (49%), Positives = 176/259 (67%), Gaps = 17/259 (6%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE++L+ SR INFR RHLM ++ L+PH K D K++ K K +NE+ E+K+C
Sbjct: 54 GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP+GPS KFLV +HT+ ELK+TGN LK SRPLL+F F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI E D
Sbjct: 173 DDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLL---HFE 281
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R+V+ + + E
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRE 279
Query: 282 RKSLCSICIVDKIVLKTLM 300
R+ + + + K KT++
Sbjct: 280 RQQVKDVQKLRKKEPKTIL 298
>sp|Q4QQT6|BRX1_RAT Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus
GN=Brix1 PE=2 SV=1
Length = 352
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 163/230 (70%), Gaps = 14/230 (6%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE++L+ SR INFR RHLM ++ L+PH K D K++ K K +NE+ E+K+C
Sbjct: 53 GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 111
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP+GPS KFLV +HT+ ELK+TGN LK SRPLL+F F
Sbjct: 112 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 171
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI E D
Sbjct: 172 DDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 225
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R+V+
Sbjct: 226 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVV 268
>sp|Q5RAN2|BRX1_PONAB Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1
PE=2 SV=1
Length = 353
Score = 255 bits (651), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/259 (49%), Positives = 177/259 (68%), Gaps = 17/259 (6%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE++L+ SR INFR RHLM ++ L+PH K D K++ K K +NE+ E+K+C
Sbjct: 54 GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP+GPS KFLV +HT+ ELK+TGN LK SRPLL+F F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
+ H+ L+KE++IQI TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI E D
Sbjct: 173 DELPHYALLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV---LSFLLHFE 281
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R+V ++ + E
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVTRSITAAKYRE 279
Query: 282 RKSLCSICIVDKIVLKTLM 300
++ + + + K KTL+
Sbjct: 280 KQQVKDVQKLRKKEPKTLL 298
>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2
Length = 291
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/268 (46%), Positives = 171/268 (63%), Gaps = 6/268 (2%)
Query: 47 FRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSS 106
F NK++ L+ SR +N+R+RHL+ ++ LLPH +K+ K++ K LNE+ EL +C++
Sbjct: 27 FMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDL-QQLNEIAELYNCNN 85
Query: 107 CLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGK 166
LFFE RKH+DLYLW++K PNGP++KF + +HTM+EL TGN LK SRP+L+F F
Sbjct: 86 VLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFES 145
Query: 167 DAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA- 225
H++LIKE+++ FG P RKSKP+ DHV FSIVDD IW R Y+I+ H+ +K
Sbjct: 146 SPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEIS--HSTKNKEEY 203
Query: 226 RGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSL 285
G + ++LVE+GPRF + I I GSFGGP +YEN YVSPN VR + E KS
Sbjct: 204 EDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSR 263
Query: 286 CSICIVDKIVLKTLMDSLGTSRMSLDML 313
+ KI K + L +S D L
Sbjct: 264 AEAAVERKI--KRRENVLAADPLSNDAL 289
>sp|P34524|BRX1_CAEEL Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans
GN=K12H4.3 PE=3 SV=1
Length = 352
Score = 227 bits (579), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 155/228 (67%), Gaps = 15/228 (6%)
Query: 46 VFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCS 105
++ N+E+VLV CSR + R R+LM ++ LLPH K D+K++ + S LNE+ E+K+C+
Sbjct: 58 LWTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLN-VLNEIAEMKNCT 116
Query: 106 SCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFG 165
++FE RK KD YLWM+ GPS+KFLV+ VHTM+ELK++GN L+ASRP+L+F F
Sbjct: 117 KVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFD 176
Query: 166 KDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVD-DHIWFRNYQITVPHNESDKV 224
K KLIK +++Q GTP H +S+P+ DHVF FS+ + D IWFRN+QI +ES
Sbjct: 177 KKPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIV---DES--- 230
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRK 272
+ L EVGPRF L +++F GSF G LY+NP YVSPN +R+
Sbjct: 231 -------LQLQEVGPRFVLEMVRLFAGSFEGAVLYDNPNYVSPNVIRR 271
>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1
Length = 295
Score = 224 bits (570), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 152/225 (67%), Gaps = 8/225 (3%)
Query: 50 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLF 109
K+KVLV SR + +R RHL+ ++VS++PH KKD+K+++K + LNEL EL +C++ F
Sbjct: 42 KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKD-RLYQLNELAELYNCNNIFF 100
Query: 110 FECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAH 169
FE R+ +DLYL +A++PNGP+VKF V +HTM+EL +TGN LK SRP+L+F F H
Sbjct: 101 FESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPH 160
Query: 170 WKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 229
K++KE++ Q FG PK R+SKP+ D V +I D IWFRNY+I ++S
Sbjct: 161 LKVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSK------- 213
Query: 230 DKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
D +TL+E+GPRF + I I GSFGGP +Y+N +VS VR +
Sbjct: 214 DPVTLIEIGPRFVMTIINILEGSFGGPVIYKNDTFVSSTMVRAAI 258
>sp|Q54JN0|BRX1_DICDI Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium
discoideum GN=bxdc2 PE=3 SV=1
Length = 326
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 147/222 (66%), Gaps = 10/222 (4%)
Query: 50 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLF 109
K++VL T +R I +YRHLM +++SL+PH KK++K++ + + + +NE E+KSC+ +
Sbjct: 74 KKRVLFTSTRGIGSKYRHLMADLISLIPHSKKEDKIDDRKTL-SLINETCEMKSCNYAIL 132
Query: 110 FECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAH 169
F+ RK D +LWMAK+P GP+VKF + VHT++EL++TGN LK SRP L F +F + H
Sbjct: 133 FDVRKGTDCFLWMAKTPLGPTVKFHITNVHTLDELQMTGNCLKGSRPFLHFDKSFDSEVH 192
Query: 170 WKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 229
+LIKE+I QI+ TPK H KSKP+ DHVF F D IWFRNYQI+ + D +
Sbjct: 193 LQLIKELITQIYSTPKGHVKSKPFFDHVFSFFYQDGRIWFRNYQISDQEFKKDSL----- 247
Query: 230 DKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVR 271
L E+GPR ++ KIF FGG LY NP YVSPN R
Sbjct: 248 ----LTEIGPRMIMHIDKIFSDGFGGSVLYSNPNYVSPNNTR 285
>sp|Q9VZE6|BRX1_DROME Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster
GN=CG11583 PE=2 SV=2
Length = 359
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 154/228 (67%), Gaps = 16/228 (7%)
Query: 49 NKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCL 108
NK++VLV +R I+ R RHLM ++ +L+PH + ++K+E +S + +NE+ E+K C+ +
Sbjct: 48 NKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKME-RSKTLSVVNEMCEMKHCNKAM 106
Query: 109 FFECRKHKDLYLWMAKSP--NGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGK 166
FE R+ +DLY+W++ + GPS KFL+ +HTM ELK+TGN L+ SRPLL+F S F +
Sbjct: 107 LFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKFDE 166
Query: 167 DAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVAR 226
H KL+KE+ +Q + P H KS+P+ DHVF F+ +D IWFRN+QI
Sbjct: 167 LPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQIL--------SED 218
Query: 227 GGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
GGL EVGPR+ +NP+KIF GSF G T++ENP YVSP++ R+VL
Sbjct: 219 GGLS-----EVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQRQVL 261
>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp4 PE=3 SV=1
Length = 289
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 33/207 (15%)
Query: 52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNK---VEAKSSKGATLNELVELKSCSSCL 108
KVLVT SR + R V L+P+ + N+ V + A N++ ++ +
Sbjct: 85 KVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDI-----VI 139
Query: 109 FFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTF---SSNFG 165
E R D L ++ P GP++ F ++ V ++ TG + + P L F +S G
Sbjct: 140 LHEHRGIPD-GLVISHLPYGPTLSFSLHNVVLRHDIPNTGT-MSEAYPHLIFENLTSKLG 197
Query: 166 KDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA 225
K +K + +F P + + + P V F+ DD+I FR++ A
Sbjct: 198 -----KRVKTALSALF--PPDPKDTTP---RVVTFANTDDYISFRHH----------IYA 237
Query: 226 RGGLDKMTLVEVGPRFCLNPIKIFGGS 252
+ G ++ L E GPRF + +I G+
Sbjct: 238 KTGPKQIILSEAGPRFEMKLFEITLGT 264
>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1
Length = 306
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 42/240 (17%)
Query: 17 DDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKV---LVTCSRRINFRYRHLMLNVV 73
D+++ E++P L + E+K+ E F + KV LVT S+R + + ++
Sbjct: 62 DETIIEDKPDEEL-----QAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELL 116
Query: 74 SLLPHC---KKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPS 130
P+ K+ +E + E + + L + K L + PNGPS
Sbjct: 117 DCFPNAEFRKRTGDIEVHE-----IAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPS 171
Query: 131 VKFLVNAVHTMEELKLTGNHLKASR--PLL---TFSSNFGKDAHWKLIKEMIIQIFGTPK 185
F ++ + T +E+ NH +++ P L FS+ G + + + IQ TP+
Sbjct: 172 FYFTLSNLQTAKEI---SNHGRSTGHIPELIINNFSTRLGMTVA-RAFQSLFIQ---TPQ 224
Query: 186 EHRKSKPYHDHVFVFSIVDDHIWFR--NYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 243
+ V D ++FR Y N D + G L E+GPRF +
Sbjct: 225 IQGR------QVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTG------LQELGPRFTM 272
>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans
GN=ZK795.3 PE=4 SV=1
Length = 292
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%)
Query: 52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKK------DNKVEAKSSKGATLNELVELKSCS 105
K+++T SR + R + + + P+ ++ D K ++SK +L+
Sbjct: 79 KIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLI------ 132
Query: 106 SCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFG 165
+F E R + D L + P GP+ F + V ++ G + P L F +
Sbjct: 133 --IFTETRGNPDGML-VCHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFDNLNS 188
Query: 166 KDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA 225
K H ++ +F PK P + FS +D+I FR++ V E+D
Sbjct: 189 KLGH--RFTTILKHLFPVPK------PDSKRIITFSNSEDYISFRHH---VYKTEND--- 234
Query: 226 RGGLDKMTLVEVGPRFCLNPIKIFGGSF 253
++ L E GPRF L P +I G+
Sbjct: 235 ----GEVELTEAGPRFELKPYQIKLGTL 258
>sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1
Length = 283
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 30/214 (14%)
Query: 33 KDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKG 92
+D+I+ + + G+ KV+VT SR + R V L P + N+ G
Sbjct: 63 QDEIDDEYSAMSGI--TDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNR------GG 114
Query: 93 ATLNELVEL-KSCSSCLFFECRKHKDLYLWMAKS--PNGPSVKFLVNAVHTMEELKLTGN 149
L LV K+ +S +H+ + M S P+GP+ F ++ V +L TGN
Sbjct: 115 TVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPDTGN 174
Query: 150 HLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWF 209
+ P L F NF D ++++ I++ P + S V F+ D I
Sbjct: 175 -MSEVHPHLIF-DNFTTDLGKRVVQ--ILKHLFPPGVKKDSA----RVITFANRGDFISV 226
Query: 210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 243
R + + V E + L EVGPRF +
Sbjct: 227 RQH-VYVKTREG----------VELAEVGPRFEM 249
>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2
Length = 389
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 232 MTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSL 285
+ L+E+GPR L IKI + GG LY + + S ++++ +F H + ++L
Sbjct: 287 IKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQDNF--HEQSRAL 338
>sp|Q8CV14|SPEE_OCEIH Probable spermidine synthase OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=speE PE=3
SV=1
Length = 512
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 78 HCKKDNKVEAKSSKGATLNELVELKSCSSCLFFE-CRKHKDLYLWMAKSPNGPSVKFLVN 136
+N+ + ++GA ++E VE+K+ + F E + D+ L PN S +N
Sbjct: 326 ELANENRHLLEINEGALMDEKVEVKNMDAFQFLEDTSEWYDVILVDLPDPNNES----LN 381
Query: 137 AVHTMEELKLTGNHLKASRPLLTFSSN--FGKDAHWKL 172
++T E L NHLK L+ +++ F ++ +W +
Sbjct: 382 KLYTKEFYSLVRNHLKPEGTLMVQATSPVFAREVYWTI 419
>sp|Q6F8J3|HEM1_ACIAD Glutamyl-tRNA reductase OS=Acinetobacter sp. (strain ADP1) GN=hemA
PE=3 SV=1
Length = 431
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 87 AKSSKGATLNELVELKSCSSCLFFECRKHKDLYL-WMAKSPNGPSVKFLVNAVHTMEELK 145
A+ A LN++V + +C+ + +H D+ L W+A++ NG +K L++ V+ E+ +
Sbjct: 33 AQQRNHAHLNDMVVVSTCNRTEVYAMTEHADILLNWLAQT-NGIDIKQLLHHVYRYEDAQ 91
Query: 146 LTGNHLKASRPL 157
+ ++ + L
Sbjct: 92 AVTHLMRVASGL 103
>sp|Q54DJ0|RPF2_DICDI Ribosome production factor 2 homolog OS=Dictyostelium discoideum
GN=bxdc1 PE=3 SV=1
Length = 307
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 195 DHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 243
DHV + + VDD I FR+Y + S + K+ L EVGP F +
Sbjct: 186 DHVVIMTAVDDKILFRHYTTIFSPSGSK------IPKVDLKEVGPSFDI 228
>sp|Q5BPS3|DOR_ARATH F-box protein DOR OS=Arabidopsis thaliana GN=DOR PE=1 SV=2
Length = 387
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 73 VSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSC-LFFECRKHKDLYLWMAKSPNGPS 130
V + C+ +K+ A + EL KSC+ L F C+KH++L+ + P+ P+
Sbjct: 39 VKSIARCRCVSKLWASILRLPYFTELYLTKSCARPRLLFACQKHRELFFFSTPQPHNPN 97
>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster
GN=CG6712 PE=2 SV=1
Length = 394
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 22/135 (16%)
Query: 126 PNGPSVKFLVNAVHTMEELKLTGNHLKASRP---LLTFSSNFGKDAHWKLIKEMIIQIFG 182
PNGP+ F ++ V ++K + RP L F++ G + M+ +F
Sbjct: 257 PNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLG-----LTVGRMLGALFH 311
Query: 183 TPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFC 242
E R + F D+I+FR+++ + + G ++ L E+GPRF
Sbjct: 312 HDPEFRGRR-----AVTFHNQRDYIFFRHHRY--------EFTKEG-KRVKLRELGPRFT 357
Query: 243 LNPIKIFGGSFGGPT 257
L + G+F T
Sbjct: 358 LKLRSLQEGTFDSKT 372
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,574,523
Number of Sequences: 539616
Number of extensions: 5235568
Number of successful extensions: 10278
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10241
Number of HSP's gapped (non-prelim): 22
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)