Query 020495
Match_columns 325
No_of_seqs 159 out of 771
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2971 RNA-binding protein re 100.0 4.5E-73 9.8E-78 520.8 19.2 262 1-280 1-266 (299)
2 COG5154 BRX1 RNA-binding prote 100.0 4E-61 8.7E-66 432.8 16.0 235 43-285 23-257 (283)
3 KOG2963 RNA-binding protein re 100.0 1.1E-45 2.3E-50 352.4 21.1 244 49-295 24-347 (405)
4 PF04427 Brix: Brix domain; I 100.0 5.9E-42 1.3E-46 305.2 8.9 186 55-248 1-191 (191)
5 KOG3031 Protein required for b 100.0 3E-38 6.6E-43 294.4 12.0 218 45-286 22-250 (307)
6 smart00879 Brix Brix domain. T 100.0 1.7E-36 3.6E-41 266.2 20.4 176 54-243 1-180 (180)
7 KOG2781 U3 small nucleolar rib 100.0 2.6E-35 5.6E-40 270.6 20.4 202 50-273 82-286 (290)
8 KOG2780 Ribosome biogenesis pr 100.0 1.3E-34 2.7E-39 268.8 15.9 193 50-262 96-291 (302)
9 COG5106 RPF2 Uncharacterized c 100.0 1.1E-28 2.3E-33 226.8 9.8 219 45-287 22-258 (316)
10 COG2136 IMP4 Predicted exosome 99.8 3.3E-19 7.2E-24 161.2 16.9 181 51-251 2-187 (191)
11 PRK03972 ribosomal biogenesis 99.8 6.7E-17 1.5E-21 147.5 18.4 180 53-252 2-194 (208)
12 PRK00933 ribosomal biogenesis 97.6 0.0019 4.2E-08 57.6 13.7 97 53-159 1-97 (165)
13 PRK10178 D-alanyl-D-alanine di 28.4 67 0.0015 29.3 3.5 53 230-282 6-59 (184)
14 COG4064 MtrG Tetrahydromethano 27.6 4.5 9.9E-05 31.4 -3.5 22 263-284 10-31 (75)
15 PF05508 Ran-binding: RanGTP-b 26.1 45 0.00097 32.8 2.1 21 234-254 186-206 (302)
16 PRK03972 ribosomal biogenesis 26.0 4.3E+02 0.0092 24.7 8.4 73 53-135 107-187 (208)
No 1
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-73 Score=520.85 Aligned_cols=262 Identities=60% Similarity=0.970 Sum_probs=235.0
Q ss_pred CCcc--ccccccCC--CCCCCCCCccCCccccccCcCCcccccccCCCCccccCCeEEEEecCCCCHHHHHHHHHHHhcC
Q 020495 1 MGKK--RKHTEIIE--PTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL 76 (325)
Q Consensus 1 ~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~kvLI~~sr~~s~~~r~LmkDLr~L~ 76 (325)
||++ +|+++.++ +.++.+..+|++|.|+. ...++.. +..+.|.|+++|||++|||++.++||||+||..||
T Consensus 1 Mg~~~k~k~~~~~~~~~~~~~~e~~~~~pqr~~-~~~~~~~----pk~~~w~NK~rvlv~ssRgis~R~RhLm~di~~Ll 75 (299)
T KOG2971|consen 1 MGRKYKRKKSETAPKAEDKKSEENAPEPPQRNL-EESDDFV----PKKEKWKNKERVLVLSSRGISFRTRHLMKDISSLL 75 (299)
T ss_pred CcchhhhhhccccCcccccchhccCCCCCcccc-ccccccc----ccccccccceeEEEEecCCchHHHHHHHHHHHHhc
Confidence 6766 66676333 33344455788887771 1122222 23677999999999999999999999999999999
Q ss_pred CCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCCeEEEEecceeehhhhhccCCCCCCCCC
Q 020495 77 PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRP 156 (325)
Q Consensus 77 P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GPTi~F~I~n~~~~~elk~~gn~~kgsrP 156 (325)
||+++++|++++. ++..|+++|++++|+.++||+++|+++.||||++.|+|||++|.|+|+|||+|++++|||++||+|
T Consensus 76 ph~k~dsk~d~~k-~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpSvkFlv~n~hTM~ElkmtgN~lkgsrp 154 (299)
T KOG2971|consen 76 PHSKKDSKLDRKK-KLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPSVKFLVHNVHTMAELKMTGNCLKGSRP 154 (299)
T ss_pred ccccccchhhhcc-hHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCceEEehhhhhhHHHhCCccccccCCcc
Confidence 9999999999777 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCEEEEEEEEEeccCCCccccccCCcCceEEEE
Q 020495 157 LLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVE 236 (325)
Q Consensus 157 lLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~I~fRhY~I~~k~ses~~~~~~~~~~v~L~E 236 (325)
+|+|+++|++.|||+++|+||++.|++|..|++|+||+|||++|++.||+||||+|+|... ..+.|+|
T Consensus 155 lLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfRnyqI~~~------------ed~~L~E 222 (299)
T KOG2971|consen 155 LLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFRNYQISEE------------EDKTLIE 222 (299)
T ss_pred eeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEEEeEeccc------------cCcceee
Confidence 9999999999999999999999999999999999999999999999999999999999733 2478999
Q ss_pred ecceeeEEEEEEecCCCCCCeeeeCCCcCCHHHHHHHhhhhccc
Q 020495 237 VGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHF 280 (325)
Q Consensus 237 IGPRf~LkL~KI~~G~f~G~vLy~n~~~~Sp~~~r~~~k~~~~l 280 (325)
|||||+|++++|++|+|+|.+||+|+.|+||+++|+..|+.++-
T Consensus 223 iGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~k~~~a~ 266 (299)
T KOG2971|consen 223 IGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVIKKQAAG 266 (299)
T ss_pred eccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876553
No 2
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-61 Score=432.81 Aligned_cols=235 Identities=44% Similarity=0.750 Sum_probs=219.6
Q ss_pred CCCccccCCeEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEE
Q 020495 43 APGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWM 122 (325)
Q Consensus 43 ~~~~~~n~~kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i 122 (325)
....|.|++++||++|||++.+.||||+||..|+||+++++|++.+. ++.+|+++|+.++|++++||+++|+.+.|||+
T Consensus 23 n~~~f~~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk-~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ 101 (283)
T COG5154 23 NSAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKK-NLGQLNELAELYNCNNMLFFESRKRSDLYLMG 101 (283)
T ss_pred chhcccccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhh-hHHHHHHHHHHhcCCceEEEeecccccceeee
Confidence 36678999999999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred EeCCCCCeEEEEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEE
Q 020495 123 AKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSI 202 (325)
Q Consensus 123 ~rlP~GPTi~F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~ 202 (325)
+|.|+|||++|+++|.|||+|+.++|||++||+|.|+|++.|++.|||+++|+++++.|+.|++.+.|+||+|||++|++
T Consensus 102 ar~pnGptvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i 181 (283)
T COG5154 102 ARIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFI 181 (283)
T ss_pred ccCCCCCeEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEEEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCCCCCCeeeeCCCcCCHHHHHHHhhhhccccc
Q 020495 203 VDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFER 282 (325)
Q Consensus 203 ~dd~I~fRhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~f~G~vLy~n~~~~Sp~~~r~~~k~~~~l~~ 282 (325)
.||+||+|.|.|.-. .| .+...|+|+||||||+|.+++|.+|+|+|.+||.|.+|+||+++|++.+.+++-+.
T Consensus 182 ~DgkIWvR~YeI~re-~e------d~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vra~ir~qaae~~ 254 (283)
T COG5154 182 LDGKIWVRCYEIGRE-NE------DKSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVRAAIRNQAAENL 254 (283)
T ss_pred ecCeEEEEEEeeccc-cc------cccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHHHHHHHHHHHHH
Confidence 999999999999632 21 12346999999999999999999999999999999999999999999986555444
Q ss_pred ccc
Q 020495 283 KSL 285 (325)
Q Consensus 283 k~~ 285 (325)
+..
T Consensus 255 ~~R 257 (283)
T COG5154 255 FAR 257 (283)
T ss_pred Hhh
Confidence 433
No 3
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-45 Score=352.36 Aligned_cols=244 Identities=20% Similarity=0.285 Sum_probs=207.6
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHhcC-CCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCC
Q 020495 49 NKEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPN 127 (325)
Q Consensus 49 n~~kvLI~~sr~~s~~~r~LmkDLr~L~-P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~ 127 (325)
..+.+++..++-++..+++|..|||++| ||++..+|..++| +++|++.+|...|+||+++++.+.. ..+|.|+|+|.
T Consensus 24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N-~iKDfv~~~gplGVTH~l~lskt~~-nlslki~R~Pq 101 (405)
T KOG2963|consen 24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRN-KLKDFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQ 101 (405)
T ss_pred cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhh-hhhhHHhhcccccceEEEEEecccC-ceeEEEEecCC
Confidence 3567777777778899999999999999 9999999866666 9999999999999999999998875 78999999999
Q ss_pred CCeEEEEecceeehhhhhccC------CCCCCCCCeEEEcCCCCCh--hhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEE
Q 020495 128 GPSVKFLVNAVHTMEELKLTG------NHLKASRPLLTFSSNFGKD--AHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFV 199 (325)
Q Consensus 128 GPTi~F~I~n~~~~~elk~~g------n~~kgsrPlLvF~~~F~~~--~hlklik~lf~~~F~~p~~~~~s~~~~drVis 199 (325)
|||++|+|..|++.+|+.... |..--++|+||+| +|++. +|++|+..|||||||+++++.+++..++||++
T Consensus 102 GPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmN-gFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcll 180 (405)
T KOG2963|consen 102 GPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLN-GFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLL 180 (405)
T ss_pred CCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEc-cCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEE
Confidence 999999999999999996421 2233489999997 99986 89999999999999999999999999999999
Q ss_pred EEEe--CCEEEEEEEEEeccCC----------------------------------------Cccc--------------
Q 020495 200 FSIV--DDHIWFRNYQITVPHN----------------------------------------ESDK-------------- 223 (325)
Q Consensus 200 F~~~--dd~I~fRhY~I~~k~s----------------------------------------es~~-------------- 223 (325)
++|. ++.|.||||.|.+... |||.
T Consensus 181 inyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~ 260 (405)
T KOG2963|consen 181 INYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDV 260 (405)
T ss_pred EecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccc
Confidence 9994 4689999999986541 1110
Q ss_pred ---cc--------c---CCcCceEEEEecceeeEEEEEEecCCCCCCeeeeCCCcCCHHHHHHHhhh-hccccccccccc
Q 020495 224 ---VA--------R---GGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSF-LLHFERKSLCSI 288 (325)
Q Consensus 224 ---~~--------~---~~~~~v~L~EIGPRf~LkL~KI~~G~f~G~vLy~n~~~~Sp~~~r~~~k~-~~~l~~k~~~~~ 288 (325)
+. + .++..|+|+|||||+||+|+||++|.++|+||||.+..+|++|+.++.+. +|....|+++++
T Consensus 261 ~~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eEi~~l~~~~ekk~~lKeqRkk 340 (405)
T KOG2963|consen 261 KEEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEEIKALRKRHEKKRRLKEQRKK 340 (405)
T ss_pred hhhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1 23678999999999999999999999999999999999999999999873 555667777777
Q ss_pred cchhHHH
Q 020495 289 CIVDKIV 295 (325)
Q Consensus 289 ~~~~~~~ 295 (325)
.|-..+.
T Consensus 341 eQ~env~ 347 (405)
T KOG2963|consen 341 EQEENVA 347 (405)
T ss_pred HHHHHHH
Confidence 6655443
No 4
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=5.9e-42 Score=305.22 Aligned_cols=186 Identities=36% Similarity=0.586 Sum_probs=78.0
Q ss_pred EEecCCCCHHHHHHHHHHHhcC-CCCcccchhhccCC-ChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCCeEE
Q 020495 55 VTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSS-KGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVK 132 (325)
Q Consensus 55 I~~sr~~s~~~r~LmkDLr~L~-P~skk~~K~~~kn~-~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GPTi~ 132 (325)
|++|+++|+++++|++||+.++ ||+.+ +.+++. .++++.++|..++|++++++++++++|++|||+|+|+|||++
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~---~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~ 77 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLFPPNSKK---LNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLE 77 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS-TTEEE------TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEE---EeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEE
Confidence 6899999999999999999999 88876 444443 789999999999999999999998889999999999999999
Q ss_pred EEecceeehhhhhccCCCCCCCCCeEEEcCCCC--ChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCE-EEE
Q 020495 133 FLVNAVHTMEELKLTGNHLKASRPLLTFSSNFG--KDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDH-IWF 209 (325)
Q Consensus 133 F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~--~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~-I~f 209 (325)
|+|.+|++++|++.......+++|+|+|+ +|. .+++++++++||++||+++..+.+.++++||||+|++++|. |||
T Consensus 78 f~I~~~~~~~~~~~~~~~~~~~~P~lif~-g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~f 156 (191)
T PF04427_consen 78 FSIENYKLMKDIKSSSKRPKGSRPLLIFN-GFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFF 156 (191)
T ss_dssp EEEEEEE-HHHHT-------S---EEEEE---------------------------------------------------
T ss_pred EEEEeEEEhhHhcccccCCCCCCeEEEEE-eccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999986655455889999998 443 35899999999999999999999999999999999999888 999
Q ss_pred EEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEE
Q 020495 210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 248 (325)
Q Consensus 210 RhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI 248 (325)
||| |..+.++. .+...+.|+|+||||||+|+|+||
T Consensus 157 R~Y-i~~~~~~~---~~~~~~~v~L~EiGPr~~l~l~kI 191 (191)
T PF04427_consen 157 RHY-IFKSGSKN---PKKLLPRVELVEIGPRFTLKLRKI 191 (191)
T ss_dssp ---------------------------------------
T ss_pred ccc-cccccccc---ccccccccccccccccccccccCC
Confidence 999 72221110 001125699999999999999987
No 5
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-38 Score=294.41 Aligned_cols=218 Identities=17% Similarity=0.282 Sum_probs=202.1
Q ss_pred CccccCCeEEEEecCCCCHHHHHHHHHHHhcC-CCCcccchhhccC-----CChhhHHHHhhhCCCCeEEEEEeecCCCC
Q 020495 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKS-----SKGATLNELVELKSCSSCLFFECRKHKDL 118 (325)
Q Consensus 45 ~~~~n~~kvLI~~sr~~s~~~r~LmkDLr~L~-P~skk~~K~~~kn-----~~lk~l~~~a~~~~~s~~i~f~~~KK~~~ 118 (325)
.-.+|....|++.+..++..+.++|.||..+. |.+.. ++++| ++...+++++++++|+.+++.+++||+|+
T Consensus 22 klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i~---~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~ 98 (307)
T KOG3031|consen 22 KLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEIR---YNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPN 98 (307)
T ss_pred hhchhhhhhhccCchhhchHHHHHHHHHHHhccCceee---eccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCC
Confidence 44778889999999999999999999999998 98775 66776 56679999999999999999999999999
Q ss_pred eEEEEeCCCC---CeEEEEecceeehhhhhccCCCCCCCCCeEEEc-CCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 020495 119 YLWMAKSPNG---PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFS-SNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYH 194 (325)
Q Consensus 119 ~L~i~rlP~G---PTi~F~I~n~~~~~elk~~gn~~kgsrPlLvF~-~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~ 194 (325)
+|++||++++ +|++|+|+||.+..||+..+ +..|++|+|+|+ ..|++++.+++++++|.|+|+++.++.+.+.++
T Consensus 99 nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~k-~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl 177 (307)
T KOG3031|consen 99 NLVIGRTFDYEVLDMIELGIENYKSLSDFKAAK-ITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGL 177 (307)
T ss_pred ceEEEEecCchhhHHHHHhhhhhhhhhhhhccC-CCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccc
Confidence 9999999999 99999999999999999864 778999999999 999999999999999999999999999999999
Q ss_pred CEEEEEEEeCC-EEEEEEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCCCCCCeeeeCCCcCCHHHHHHH
Q 020495 195 DHVFVFSIVDD-HIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273 (325)
Q Consensus 195 drVisF~~~dd-~I~fRhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~f~G~vLy~n~~~~Sp~~~r~~ 273 (325)
+||++|++.++ .|+||||.+..+++ ++..|+|+|+||||+++|+++++ ...|++.++++
T Consensus 178 ~~v~vfta~~~~~v~~r~Y~lklkKs------~~~~PRiELeE~GPsldf~irR~--------------~~asddL~k~A 237 (307)
T KOG3031|consen 178 EYVIVFTATEETNVLFRVYRLKLKKS------GTRTPRIELEEMGPSLDFEIRRT--------------KLASDDLYKEA 237 (307)
T ss_pred cEEEEEEeecCceeeeeeeeeeeeec------cCCCCceehhhcCCceeEEEEec--------------cCCCHHHHHHH
Confidence 99999999876 59999999999987 67789999999999999999999 88999999999
Q ss_pred hhhhccccccccc
Q 020495 274 LSFLLHFERKSLC 286 (325)
Q Consensus 274 ~k~~~~l~~k~~~ 286 (325)
+++|+||+.|.+|
T Consensus 238 ~k~PK~l~~K~kK 250 (307)
T KOG3031|consen 238 LKKPKQLEKKKKK 250 (307)
T ss_pred hcCchhccccccc
Confidence 9999998766554
No 6
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=100.00 E-value=1.7e-36 Score=266.15 Aligned_cols=176 Identities=39% Similarity=0.568 Sum_probs=152.9
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhC-CCCeEEEEEee-cCCCCeEEEEeCCCCCeE
Q 020495 54 LVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELK-SCSSCLFFECR-KHKDLYLWMAKSPNGPSV 131 (325)
Q Consensus 54 LI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~-~~s~~i~f~~~-KK~~~~L~i~rlP~GPTi 131 (325)
||++||++|.++++|++||+.++|++.. ..++++++.++.++|... +|+++++++.+ +++|++||++|+|+|||+
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~---~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l 77 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTK---INRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL 77 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEe---ecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence 6899999999999999999999987665 334444667788887777 88888888876 677999999999999999
Q ss_pred EEEecceeehhhhhc--cCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCEEEE
Q 020495 132 KFLVNAVHTMEELKL--TGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWF 209 (325)
Q Consensus 132 ~F~I~n~~~~~elk~--~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~I~f 209 (325)
.|.+.++.+++|+.. .+|+..+++|+|+|+ +|....+ ++++++|+++|+.+..+.++++++|||++|++.+|.|||
T Consensus 78 ~f~i~~v~~~~~~~~~~~~~~~~~~~P~li~~-~~~~~~~-~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~ 155 (180)
T smart00879 78 DFKILNVSLRKELKGFKTGNCLTGSRPLLIFN-NFFTELG-KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFF 155 (180)
T ss_pred EEEEECcccHhhhhhhhcCCCcCCCccEEEEC-CCCCchH-HHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEE
Confidence 999999999999986 568889999999998 6665544 789999999999999998899999999999999999999
Q ss_pred EEEEEeccCCCccccccCCcCceEEEEecceeeE
Q 020495 210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 243 (325)
Q Consensus 210 RhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~L 243 (325)
|||+|.+. .+.++++|+||||||+|
T Consensus 156 R~y~i~~~---------~~~~~v~l~eiGPr~~l 180 (180)
T smart00879 156 RHYRIKFG---------KKKPRVELQEIGPRFTL 180 (180)
T ss_pred EEEEEEcc---------CCCCceEEEEecCCccC
Confidence 99999862 12368999999999986
No 7
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=270.62 Aligned_cols=202 Identities=21% Similarity=0.315 Sum_probs=184.8
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCC
Q 020495 50 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGP 129 (325)
Q Consensus 50 ~~kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GP 129 (325)
.||||||+||.+|+++.+|+|+|+.++||+.+ ++|+|..+..+++.|..+|+|.+|++.++++.|..|.++++|-||
T Consensus 82 dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr---~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPfGP 158 (290)
T KOG2781|consen 82 DPKIMVTTSRDPSSRLKMFAKELKLVFPNAQR---LNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPFGP 158 (290)
T ss_pred CCcEEEEeCCCchHHHHHHHHhheEeccChhh---hcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCCCC
Confidence 79999999999999999999999999999886 889998899999999999999999999999999999999999999
Q ss_pred eEEEEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCEEEE
Q 020495 130 SVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWF 209 (325)
Q Consensus 130 Ti~F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~I~f 209 (325)
|+.|.+.|+.+.+|+...|+ ++..+|.|+|+ ||++..+. .+++++..+||.|... .+|||+|.+.+|.|-|
T Consensus 159 Ta~Fsl~nvVmRhdip~~G~-msE~~phlIfd-Nf~t~lG~-Rv~~iLkhLFP~pk~d------s~Rvvtf~N~~DyIsF 229 (290)
T KOG2781|consen 159 TAFFSLHNVVMRHDIPDIGT-MSEQKPHLIFD-NFTTKLGK-RVKTILKHLFPVPKDD------SKRVVTFANRNDYISF 229 (290)
T ss_pred ceEeeeeeeeeccccccccc-ccccCceEEec-cccchHHH-HHHHHHHHhCCCCcCC------cccEEEEecCCceEEE
Confidence 99999999999999998886 45679999997 99998886 5899999999988765 5899999999999999
Q ss_pred EEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCCCC---CCeeeeCCCcCCHHHHHHH
Q 020495 210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYENPFYVSPNQVRKV 273 (325)
Q Consensus 210 RhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~f~---G~vLy~n~~~~Sp~~~r~~ 273 (325)
|||.|.... ...++|.|+||||.|+|+.|-.|+++ +++.|....|......|..
T Consensus 230 Rhhvy~~~~----------~k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR~~ 286 (290)
T KOG2781|consen 230 RHHVYKKTD----------GKEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKRDF 286 (290)
T ss_pred EEEEEecCC----------CceEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhhhh
Confidence 999998543 24699999999999999999999986 9999999999887766654
No 8
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=268.79 Aligned_cols=193 Identities=21% Similarity=0.327 Sum_probs=171.6
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCC
Q 020495 50 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGP 129 (325)
Q Consensus 50 ~~kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GP 129 (325)
.+||||+++.+++.....|+..|+.++||+.- ..+.+..++.++++|...++|+++++...++.++.|.|+++|+||
T Consensus 96 spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~---~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GP 172 (302)
T KOG2780|consen 96 SPKVLITTSKNPKRTTYKFASELLDIIPNSTV---KKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGP 172 (302)
T ss_pred CccEEEEcCCCCcccHHHHHHHHHHhCCCceE---EecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCC
Confidence 59999999999999999999999999999874 234466899999999999999999998777779999999999999
Q ss_pred eEEEEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCEEEE
Q 020495 130 SVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWF 209 (325)
Q Consensus 130 Ti~F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~I~f 209 (325)
|++|.+.||.+.+|++..|++ .+..|.|+.+ ||++..+.. +.+||+.+||.++... .+||++||+++|.|+|
T Consensus 173 T~~Fkls~~~~~kdi~k~g~~-t~h~PElIlN-NFtTrlG~~-v~r~f~sLfp~~p~f~-----gRrvvtFhnQrD~IfF 244 (302)
T KOG2780|consen 173 TAYFKLSNVVLTKDIKKHGRP-TSHIPELILN-NFTTRLGMT-VGRLFASLFPHDPQFT-----GRRVVTFHNQRDYIFF 244 (302)
T ss_pred ceEEEeecccchhhhhhcCCc-ccccchhhhh-cccchhhHH-HHHHHHHhCCCCcccc-----ceeEEEEEecCceEEE
Confidence 999999999999999999954 4589999997 999998875 8999999998766432 5999999999999999
Q ss_pred EEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCCCC---CCeeeeCC
Q 020495 210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYENP 262 (325)
Q Consensus 210 RhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~f~---G~vLy~n~ 262 (325)
|||+|.+++.+ .++.|+|+||||||+|.+.++|.|+ |+.-|...
T Consensus 245 RhhRY~Fkee~---------~kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~ 291 (302)
T KOG2780|consen 245 RHHRYEFKEEE---------IKVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHK 291 (302)
T ss_pred EEEEEeecccc---------cccchhhcCCceeeeehhhhhccccccceeeeeeec
Confidence 99999998532 4789999999999999999999997 77777743
No 9
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=1.1e-28 Score=226.82 Aligned_cols=219 Identities=15% Similarity=0.208 Sum_probs=195.5
Q ss_pred CccccCCeEEEEecCCCCHHHHHHHHHHHhcC-CCCcccchhhccC-----CChhhHHHHhhhCCCCeEEEEEeecCCCC
Q 020495 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKS-----SKGATLNELVELKSCSSCLFFECRKHKDL 118 (325)
Q Consensus 45 ~~~~n~~kvLI~~sr~~s~~~r~LmkDLr~L~-P~skk~~K~~~kn-----~~lk~l~~~a~~~~~s~~i~f~~~KK~~~ 118 (325)
...++.+..|++.+-..++.+.+.|-|+..+. |.... +.++| ++..++++++++++|+..++|++.+|+++
T Consensus 22 klve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~i~---f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~h 98 (316)
T COG5106 22 KLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEIG---FIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRH 98 (316)
T ss_pred hhhhhhhheEeccCcccchhhhhhhcchhhhccchhhc---cccCCcccccccCCHHHHHHHhhhhhhhhhhhhcccccc
Confidence 44677788888888889999999999999998 87665 66776 66678999999999999999999999999
Q ss_pred eEEEEeCCCC---CeEEEEecceeehhhhhccCCCCCCCCCeEEEc-CCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 020495 119 YLWMAKSPNG---PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFS-SNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYH 194 (325)
Q Consensus 119 ~L~i~rlP~G---PTi~F~I~n~~~~~elk~~gn~~kgsrPlLvF~-~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~ 194 (325)
+|+++|+++. +|++|.|.+|.+..|+..+| ...|.+|+++|+ .+|+.+|.|+.++++|.|||++.........++
T Consensus 99 nlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~-~~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagl 177 (316)
T COG5106 99 NLTIGRAFNYELIDMIELKINRYKSVSDFECAG-PELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGL 177 (316)
T ss_pred ceeEEeecchHHHHHHHHhhhhhhehhhhhccC-CccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcce
Confidence 9999999999 89999999999999998876 456899999999 999999999999999999999988777777889
Q ss_pred CEEEEEEEeCC--------EEEEEEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCCCCCCeeeeCCCcCC
Q 020495 195 DHVFVFSIVDD--------HIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVS 266 (325)
Q Consensus 195 drVisF~~~dd--------~I~fRhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~f~G~vLy~n~~~~S 266 (325)
.+||+-+.++. .+.||+|.....++ .++.|+++|+|+|||++++++++ ...|
T Consensus 178 s~Vi~~t~~g~~~d~~plp~v~fRVyk~k~~kt------~~~lpr~elee~GPrldf~i~R~--------------~~~s 237 (316)
T COG5106 178 SWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKT------KTNLPRLELEECGPRLDFEIVRS--------------YHCS 237 (316)
T ss_pred eEEEEEecchhhhccccccceeeeeeecccccc------cCCCCceehhhcccceeeEEEee--------------cCCC
Confidence 99999998542 48999999887655 46789999999999999999999 7799
Q ss_pred HHHHHHHhhhhcccccccccc
Q 020495 267 PNQVRKVLSFLLHFERKSLCS 287 (325)
Q Consensus 267 p~~~r~~~k~~~~l~~k~~~~ 287 (325)
++++.+++++|+++|+|.+|-
T Consensus 238 ~d~~~ealkkPk~~e~KpkKN 258 (316)
T COG5106 238 DDLYKEALKKPKTQEPKPKKN 258 (316)
T ss_pred hHHHHHHhcCccccCCCcccc
Confidence 999999999999999988763
No 10
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=99.82 E-value=3.3e-19 Score=161.17 Aligned_cols=181 Identities=22% Similarity=0.272 Sum_probs=157.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeC-CCCC
Q 020495 51 EKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKS-PNGP 129 (325)
Q Consensus 51 ~kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rl-P~GP 129 (325)
+++||||||++|.++++|++||..++|++.. ..+.+.++..+.+.|...|.+.+++..+.++.|..|.+.++ |.||
T Consensus 2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~---~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~ 78 (191)
T COG2136 2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYF---LRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGL 78 (191)
T ss_pred CcEEEEecCCccHHHHHHHHHHHHhCCcceE---EecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCc
Confidence 6899999999999999999999999999875 33444477899999999999999999999999999999999 9999
Q ss_pred eEEEEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhc----CCCCCCCCCCCCCCCEEEEEEEeCC
Q 020495 130 SVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQI----FGTPKEHRKSKPYHDHVFVFSIVDD 205 (325)
Q Consensus 130 Ti~F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~----F~~p~~~~~s~~~~drVisF~~~dd 205 (325)
++.|.+.++++.+|+...++....+-|.++++ +|.+..+.+.+.++|..+ |+....- ....|+.++.+++
T Consensus 79 ~~~f~l~~v~l~re~~~~~~~~~~~~~~~I~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-----~~~~v~~~~~~~~ 152 (191)
T COG2136 79 TFSFKLSGVKLRREIPVLGPKSRLHGPELIFN-NFTTLLGFLKVAEAFSELLLVKFVPNPAW-----EHELVATGANKGD 152 (191)
T ss_pred eEEEEEecceEEEeccccCCcccCCCCceeee-cccccccchhhHHHHHhhcccccccCccc-----ceeeeeeccccce
Confidence 99999999999999988776445678999997 999988877788999888 6432221 2478999999999
Q ss_pred EEEEEEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecC
Q 020495 206 HIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGG 251 (325)
Q Consensus 206 ~I~fRhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G 251 (325)
.+.||.|.+.+.. ..+.+.|+||||+|++-++++|
T Consensus 153 f~~~~~~~~~~~~-----------~~~~~~~vgp~~~~r~~~~~~g 187 (191)
T COG2136 153 FKSLRRHRRVFEE-----------DGIGLEEVGPRLTLRLWRMEDG 187 (191)
T ss_pred EEEEEeeeeEeee-----------eeeeEEEeCceeeeehhhhhhc
Confidence 9999999888763 3689999999999999999988
No 11
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.75 E-value=6.7e-17 Score=147.49 Aligned_cols=180 Identities=15% Similarity=0.107 Sum_probs=138.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCC---C
Q 020495 53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---P 129 (325)
Q Consensus 53 vLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~G---P 129 (325)
+|||+|+.+|+++++|++||..++||+.. ++|++..+++|.+.|..+|.++++++.+.++.|+.|.|.++|+| |
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~Pns~~---i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP 78 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVFPNSLY---LTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY 78 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhCCCCEE---EecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence 79999999999999999999999999975 66777789999999999999999999999999999999999865 5
Q ss_pred eEEEEecceeehhhh--hccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCC--CCC------CCCCEEEE
Q 020495 130 SVKFLVNAVHTMEEL--KLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR--KSK------PYHDHVFV 199 (325)
Q Consensus 130 Ti~F~I~n~~~~~el--k~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~--~s~------~~~drVis 199 (325)
|++|+|+|+.+.+|+ +..|. ...+.|++|.+ +|.+.+.+......+-.-++.+-..+ .|+ .+.+-|++
T Consensus 79 Ta~FkLsnV~l~~ei~~~~~~~-~s~~~p~iItt-s~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLV 156 (208)
T PRK03972 79 LGYLYLHGIKLQREMGFRNLRP-IREDMPLVITT-AKRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGV 156 (208)
T ss_pred eEEEEEccEEEHHHcccCCCCC-ccccccEEEEc-CCCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEE
Confidence 999999999999999 44554 45689998885 99998865333444556666654444 232 23366666
Q ss_pred EEEeCCEEEEEEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCC
Q 020495 200 FSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGS 252 (325)
Q Consensus 200 F~~~dd~I~fRhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~ 252 (325)
+.----..-+-.|++...+ -.-+||-+-.+.-..++|-
T Consensus 157 V~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 194 (208)
T PRK03972 157 IERHPRGMAVNFYRLDVTK---------------ERPVGPLIFVKIWIMEDGR 194 (208)
T ss_pred EecCCCceEEEEEEecccc---------------ccccCCcEEEEEEEeccCc
Confidence 6543333456667776542 2457999888877776663
No 12
>PRK00933 ribosomal biogenesis protein; Validated
Probab=97.60 E-value=0.0019 Score=57.64 Aligned_cols=97 Identities=21% Similarity=0.227 Sum_probs=67.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCCeEE
Q 020495 53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVK 132 (325)
Q Consensus 53 vLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GPTi~ 132 (325)
++||||++++.++++++++|...+ ++.. +.|++..++++.+.| +...++++++.++.|+.|.+-..-+.+.+.
T Consensus 1 mIITTSrkPs~~t~~fAkeLa~~l-n~~y---v~Rgk~Sl~eL~~~~---~~~~llVV~E~kg~P~~L~iyd~~~~~~~~ 73 (165)
T PRK00933 1 MIITTSRKPSQRTRSLVKDLARFL-NCKY---VNRGKMSLQELLEEC---EARYLLIIGEYKGNPGALKFYDVEGNKLLS 73 (165)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHh-CCEE---EccCCccHHHHHHHh---ccCcEEEEECCCCCCceEEEEECCCCEEEE
Confidence 379999999999999999999999 7644 345544666665443 345888888888899999999987777666
Q ss_pred EEecceeehhhhhccCCCCCCCCCeEE
Q 020495 133 FLVNAVHTMEELKLTGNHLKASRPLLT 159 (325)
Q Consensus 133 F~I~n~~~~~elk~~gn~~kgsrPlLv 159 (325)
+.+. +..-.|... ...++.+|.+.
T Consensus 74 ~~~~-v~~~~~~~~--~~~~~~~p~~~ 97 (165)
T PRK00933 74 YRLS-VKLQREISG--PVFKNRRPIKS 97 (165)
T ss_pred EEEE-eeeecccCc--ceeecCCCccc
Confidence 6553 444444432 13445566443
No 13
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=28.35 E-value=67 Score=29.35 Aligned_cols=53 Identities=4% Similarity=-0.021 Sum_probs=43.0
Q ss_pred CceEEEEecceeeEEEEEEecCCCCCCeeeeC-CCcCCHHHHHHHhhhhccccc
Q 020495 230 DKMTLVEVGPRFCLNPIKIFGGSFGGPTLYEN-PFYVSPNQVRKVLSFLLHFER 282 (325)
Q Consensus 230 ~~v~L~EIGPRf~LkL~KI~~G~f~G~vLy~n-~~~~Sp~~~r~~~k~~~~l~~ 282 (325)
.=|.+.++-|.+.+.++=--...|.|.+||.. .-+..++..+++.+-++.|++
T Consensus 6 ~~V~i~~~~p~i~~DlrYat~~NF~g~~iY~~~~c~l~~~aA~aL~~a~~~l~~ 59 (184)
T PRK10178 6 RLVEITVAFHGVEIDLKYATADNLTGKPIYREARCLLHKDAEAALRKAVSIAQL 59 (184)
T ss_pred CcEEeeecCCCCEEEeeeccCCCcCCCccccCCeEEECHHHHHHHHHHHHHHHh
Confidence 35889999999999999999999999999975 456788777777766666543
No 14
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=27.62 E-value=4.5 Score=31.39 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.8
Q ss_pred CcCCHHHHHHHhhhhccccccc
Q 020495 263 FYVSPNQVRKVLSFLLHFERKS 284 (325)
Q Consensus 263 ~~~Sp~~~r~~~k~~~~l~~k~ 284 (325)
.+++|++.++..+|.-.++.|.
T Consensus 10 v~v~~~dfne~~kRLdeieekv 31 (75)
T COG4064 10 VVVDPDDFNEIHKRLDEIEEKV 31 (75)
T ss_pred cccCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988887664
No 15
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=26.14 E-value=45 Score=32.82 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=17.9
Q ss_pred EEEecceeeEEEEEEecCCCC
Q 020495 234 LVEVGPRFCLNPIKIFGGSFG 254 (325)
Q Consensus 234 L~EIGPRf~LkL~KI~~G~f~ 254 (325)
-.-|||-|+|.++.||.|--.
T Consensus 186 ~~qvGP~F~lslY~lF~~~sr 206 (302)
T PF05508_consen 186 PVQVGPTFTLSLYMLFYGHSR 206 (302)
T ss_pred ccccCCcEEEEeeheeccccc
Confidence 356999999999999988754
No 16
>PRK03972 ribosomal biogenesis protein; Validated
Probab=25.96 E-value=4.3e+02 Score=24.69 Aligned_cols=73 Identities=11% Similarity=0.203 Sum_probs=44.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHhcC--CCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEe------
Q 020495 53 VLVTCSRRINFRYRHLMLNVVSLL--PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAK------ 124 (325)
Q Consensus 53 vLI~~sr~~s~~~r~LmkDLr~L~--P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~r------ 124 (325)
.+||++.+++.......+.+...+ |+.. |++ .++.+++...++..++++..+- +...+.+-|
T Consensus 107 ~iItts~kt~~g~~~~Ak~lA~eLgi~yV~------R~k---~Sl~~L~~~~~~d~vLVV~~~~-~~~~~~~~~~~~~~~ 176 (208)
T PRK03972 107 LVITTAKRVGLDHMAFAQVFAELTGGKFVP------RGG---KSLQDIADKYNTDVLGVIERHP-RGMAVNFYRLDVTKE 176 (208)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCceeC------cCC---cCHHHHHhhhcCceEEEEecCC-CceEEEEEEeccccc
Confidence 478889999988888889988876 5533 222 2455655556666666554332 233444444
Q ss_pred CCCCCeEEEEe
Q 020495 125 SPNGPSVKFLV 135 (325)
Q Consensus 125 lP~GPTi~F~I 135 (325)
-|-||.+..++
T Consensus 177 ~~~~~~~~~~~ 187 (208)
T PRK03972 177 RPVGPLIFVKI 187 (208)
T ss_pred cccCCcEEEEE
Confidence 24556655554
Done!