Query 020495
Match_columns 325
No_of_seqs 159 out of 771
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 03:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020495.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020495hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cxha1 c.51.1.2 (A:13-192) Pr 99.9 3.6E-27 2.6E-31 207.9 13.8 152 52-215 3-162 (180)
2 d1w94a1 c.51.1.2 (A:1-154) Pro 99.7 3.3E-19 2.4E-23 152.9 5.9 134 53-212 1-134 (154)
3 d2z3va1 c.26.2.4 (A:2-136) Hyp 16.7 28 0.002 25.0 1.8 26 91-116 86-111 (135)
4 d1rutx4 g.39.1.3 (X:114-146) L 13.3 23 0.0017 20.9 0.4 13 310-322 12-24 (33)
5 d1jf8a_ c.44.1.1 (A:) Arsenate 9.5 64 0.0046 23.5 2.0 15 49-63 1-15 (130)
6 d1mjha_ c.26.2.4 (A:) "Hypothe 9.1 65 0.0048 23.5 1.9 33 91-123 106-138 (160)
7 d1i42a_ d.15.1.2 (A:) p47 {Rat 8.1 1.5E+02 0.011 20.3 3.4 29 117-145 13-41 (89)
8 d1z2ma2 d.15.1.1 (A:79-154) In 7.6 1.5E+02 0.011 19.3 3.1 26 121-146 6-31 (76)
9 d1wy5a1 c.26.2.5 (A:1-216) Til 6.2 1.5E+02 0.011 23.3 3.0 66 44-109 18-90 (216)
10 d2zeqa1 d.15.1.1 (A:1-78) Ubiq 5.9 2.1E+02 0.015 18.8 3.2 27 120-146 4-30 (78)
No 1
>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=99.94 E-value=3.6e-27 Score=207.89 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=130.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCC--
Q 020495 52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGP-- 129 (325)
Q Consensus 52 kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GP-- 129 (325)
|||||+||++|+++++|++||+.++||+.. ++|+++.+++|+++|..+|||++++++++++.| +||++++|+||
T Consensus 3 kvLITTSr~ps~~~r~f~kdL~~v~Pns~~---~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~lP~GP~~ 78 (180)
T d2cxha1 3 RILVTTSRRPSPRIRSFVKDLSATIPGAFR---FTRGHYSMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPER 78 (180)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHTTSTTEEE---CCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEE-EEEEEEECCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCCEE---eecCCCcHHHHHHHHHHCCCCeEEEEEccCCCC-cEEEEECCCCCCC
Confidence 799999999999999999999999999875 456666999999999999999999999998766 79999999999
Q ss_pred ---eEEEEecceeehhhhhccCCC---CCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEe
Q 020495 130 ---SVKFLVNAVHTMEELKLTGNH---LKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIV 203 (325)
Q Consensus 130 ---Ti~F~I~n~~~~~elk~~gn~---~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~ 203 (325)
|++|+|.|+.+.+|++..... ...+.|.++|+ +|.+..+. ++..+|...|+.|... .++|++|+++
T Consensus 79 ~~~t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~liln-nf~t~Lg~-~~~~~f~~lf~~p~~~------~~~vvt~~n~ 150 (180)
T d2cxha1 79 PDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDS-GVAVEFAD-AFVIAFHARLKPPEAA------GYVEAVIESL 150 (180)
T ss_dssp CEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSS-STHHHHHH-HHHHHHCCBSSCCSSS------CEEEEEEEEE
T ss_pred ccceEEEEEEEEEEehhhccccCCCCCCccccchhHhc-ccchHHHH-HHHHHHHhhCCCchhc------CcEEEEEEec
Confidence 999999999999999753211 12357888886 99876643 5788999999765432 4899999999
Q ss_pred CCEEEEEEEEEe
Q 020495 204 DDHIWFRNYQIT 215 (325)
Q Consensus 204 dd~I~fRhY~I~ 215 (325)
+|.||+|+|++.
T Consensus 151 ~d~if~~~~~~~ 162 (180)
T d2cxha1 151 DARTVAVTFRYG 162 (180)
T ss_dssp ETTEEEEEEECS
T ss_pred CCeEEEEEEecC
Confidence 999999999974
No 2
>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=99.75 E-value=3.3e-19 Score=152.87 Aligned_cols=134 Identities=10% Similarity=0.073 Sum_probs=113.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCCeEE
Q 020495 53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVK 132 (325)
Q Consensus 53 vLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GPTi~ 132 (325)
+|||+||.+|+++++|++||..++|++ . ++|++..++++.+.| .++++++.+.++.|+.|.+ ++|+|||+.
T Consensus 1 vLITTSr~PS~rtr~F~keL~~i~P~~-~---~~Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~ 71 (154)
T d1w94a1 1 MLLTTSRKPSQRTRSFSQRLSRIMGWR-Y---INRGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERG 71 (154)
T ss_dssp CEEEECSSCCHHHHHHHHHHHHHHTCE-E---CCCTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEE
T ss_pred CEEECCCCccHHHHHHHHHHHHhCCCe-E---EEcCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEE
Confidence 589999999999999999999999974 3 567666888887766 4788888888888999988 999999999
Q ss_pred EEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCEEEEEEE
Q 020495 133 FLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNY 212 (325)
Q Consensus 133 F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~I~fRhY 212 (325)
|.+.|+.+.+| +|.++++ +|.+....+ +.++|..+|+.+.... +-++|++|++++|.|+++||
T Consensus 72 f~l~~v~l~~e-----------~p~li~~-~f~t~lg~~-v~~~L~~lf~~~~~~~----~~~~~itf~n~~d~i~~~~~ 134 (154)
T d1w94a1 72 YILFNPSFEMK-----------KPELADK-AVRVSSCPP-GSEGLCNLMGLEVDES----SSRDAWSIRTDEEYAWVMEL 134 (154)
T ss_dssp EEEEEEEECSS-----------CCCCSSC-CCEESCCCT-TCHHHHHHHTCEECCS----CCTTEEEEECCSSSSEEEEE
T ss_pred EEEeeEEcccc-----------CCcCccc-ccccccchh-HHHHHHHHcCCChhhc----ceeeEEEEecCCCEEEEEEE
Confidence 99999987765 6888886 899876654 6689999999776543 12559999999999999999
No 3
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}
Probab=16.71 E-value=28 Score=24.96 Aligned_cols=26 Identities=0% Similarity=-0.123 Sum_probs=21.5
Q ss_pred ChhhHHHHhhhCCCCeEEEEEeecCC
Q 020495 91 KGATLNELVELKSCSSCLFFECRKHK 116 (325)
Q Consensus 91 ~lk~l~~~a~~~~~s~~i~f~~~KK~ 116 (325)
....|.++++.++++.+++.++.+..
T Consensus 86 ~~~~I~~~a~~~~~dliV~G~~~~~~ 111 (135)
T d2z3va1 86 PAEAILQAARAEKADLIVMGTRGLGA 111 (135)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSCSSS
T ss_pred hHHHHHHHhhhhheeeEEeccCCCCc
Confidence 55689999999999999998776543
No 4
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.28 E-value=23 Score=20.86 Aligned_cols=13 Identities=38% Similarity=0.955 Sum_probs=11.0
Q ss_pred cccccceeEeEEE
Q 020495 310 LDMLGYVVGTIFC 322 (325)
Q Consensus 310 ~~~~~~~~~~~~~ 322 (325)
-|-.-||-|++||
T Consensus 12 GDRFHyvNG~lfC 24 (33)
T d1rutx4 12 GDRFHYINGSLFC 24 (33)
T ss_dssp TCEEEEETTEEEE
T ss_pred CceeEEecCEEEE
Confidence 3777899999999
No 5
>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus aureus [TaxId: 1280]}
Probab=9.54 E-value=64 Score=23.50 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=12.6
Q ss_pred cCCeEEEEecCCCCH
Q 020495 49 NKEKVLVTCSRRINF 63 (325)
Q Consensus 49 n~~kvLI~~sr~~s~ 63 (325)
|+++||++|.++...
T Consensus 1 ~k~~vlFvC~~N~cR 15 (130)
T d1jf8a_ 1 DKKTIYFISTGNSAR 15 (130)
T ss_dssp CCEEEEEEESSSSSH
T ss_pred CCCEEEEEeCCCcHH
Confidence 588999999998654
No 6
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.13 E-value=65 Score=23.47 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=24.7
Q ss_pred ChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEE
Q 020495 91 KGATLNELVELKSCSSCLFFECRKHKDLYLWMA 123 (325)
Q Consensus 91 ~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~ 123 (325)
....|.++|...+++.+++.++....-..+++|
T Consensus 106 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~G 138 (160)
T d1mjha_ 106 PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLG 138 (160)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSC
T ss_pred HHHHHhhhhhccccceEEeccCCCCcccccccC
Confidence 556899999999999999998765433344444
No 7
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.15 E-value=1.5e+02 Score=20.30 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCeEEEEecceeehhhhh
Q 020495 117 DLYLWMAKSPNGPSVKFLVNAVHTMEELK 145 (325)
Q Consensus 117 ~~~L~i~rlP~GPTi~F~I~n~~~~~elk 145 (325)
|....-.|+|+|-++.-+...-.++.++.
T Consensus 13 p~t~I~iRlPdG~~~~~~F~~~~tl~dv~ 41 (89)
T d1i42a_ 13 PTTNIQIRLADGGRLVQKFNHSHRISDIR 41 (89)
T ss_dssp CCEEEEEEETTTCCEEEEECSSSCGGGHH
T ss_pred CcEEEEEEcCCCCEEEEEECCchhHHHHH
Confidence 56667789999988888887777777765
No 8
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.56 E-value=1.5e+02 Score=19.31 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEeCCCCCeEEEEecceeehhhhhc
Q 020495 121 WMAKSPNGPSVKFLVNAVHTMEELKL 146 (325)
Q Consensus 121 ~i~rlP~GPTi~F~I~n~~~~~elk~ 146 (325)
++.+.++|-|+.+.|..-.|..++|.
T Consensus 6 i~Vk~~~G~~~~l~v~~~~tV~~lK~ 31 (76)
T d1z2ma2 6 ILVRNNKGRSSTYEVRLTQTVAHLKQ 31 (76)
T ss_dssp EEEECTTSCEEEEEECTTSBHHHHHH
T ss_pred EEEEcCCCCEEEEEECCCCcHHHHHH
Confidence 35688899999999888888887763
No 9
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}
Probab=6.21 E-value=1.5e+02 Score=23.32 Aligned_cols=66 Identities=11% Similarity=0.145 Sum_probs=42.0
Q ss_pred CCccccCCeEEEEecCCCCHHH-HHHHHHHHhcCCCCcc-cchhh---ccC--CChhhHHHHhhhCCCCeEEE
Q 020495 44 PGVFRNKEKVLVTCSRRINFRY-RHLMLNVVSLLPHCKK-DNKVE---AKS--SKGATLNELVELKSCSSCLF 109 (325)
Q Consensus 44 ~~~~~n~~kvLI~~sr~~s~~~-r~LmkDLr~L~P~skk-~~K~~---~kn--~~lk~l~~~a~~~~~s~~i~ 109 (325)
...+++.+||+|-.|+|+-+.+ -+++.++..-.+...- ..-++ +.. .....+..+|+..|..+.+.
T Consensus 18 ~~l~~~~~kv~Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r~~s~~~~~~~~~~~~~l~i~~~i~ 90 (216)
T d1wy5a1 18 EKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVG 90 (216)
T ss_dssp HCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HhccCCCCeEEEEeCCcHHHHHHHHHHHHHHHhcCCCcEEEEEeecccccchhhhhhHHHHHHHhhhhhhhhh
Confidence 3457778899999999987755 7888887665432110 00011 111 13456889999999887654
No 10
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.94 E-value=2.1e+02 Score=18.81 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=22.6
Q ss_pred EEEEeCCCCCeEEEEecceeehhhhhc
Q 020495 120 LWMAKSPNGPSVKFLVNAVHTMEELKL 146 (325)
Q Consensus 120 L~i~rlP~GPTi~F~I~n~~~~~elk~ 146 (325)
.++.++.+|-|+.+.|..-.+..++|.
T Consensus 4 ~I~Vk~~~g~t~~l~v~~~~tV~~lK~ 30 (78)
T d2zeqa1 4 IVFVRFNSSYGFPVEVDSDTSILQLKE 30 (78)
T ss_dssp EEEEESSSSSCEEEEECTTCBHHHHHH
T ss_pred EEEEEcCCCCEEEEEEcccccHHHHHH
Confidence 467788999999999988888888864
Done!