Query 020497
Match_columns 325
No_of_seqs 139 out of 237
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:52:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 2E-138 3E-143 1038.6 24.1 313 1-324 58-373 (478)
2 TIGR03777 RPE4 Rickettsial pal 54.4 5.5 0.00012 27.0 0.6 9 278-286 24-32 (32)
3 PF15468 DUF4636: Domain of un 40.3 15 0.00033 35.0 1.3 39 200-243 25-63 (243)
4 COG3114 CcmD Heme exporter pro 24.9 1.7E+02 0.0037 23.0 4.6 39 230-268 9-56 (67)
5 PF15444 TMEM247: Transmembran 21.9 1.1E+02 0.0023 28.8 3.5 23 92-114 193-215 (218)
6 PF01956 DUF106: Integral memb 21.5 41 0.00089 29.5 0.8 29 78-107 6-35 (168)
7 PF09060 L27_N: L27_N; InterP 18.1 1.3E+02 0.0028 22.4 2.5 18 294-311 26-43 (49)
8 PF09878 DUF2105: Predicted me 17.9 79 0.0017 29.9 1.8 46 209-259 158-206 (212)
9 PF10751 DUF2535: Protein of u 17.2 91 0.002 25.5 1.8 17 192-208 50-66 (83)
10 PF13198 DUF4014: Protein of u 16.8 3.1E+02 0.0067 21.9 4.6 31 223-262 19-49 (72)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=1.5e-138 Score=1038.57 Aligned_cols=313 Identities=61% Similarity=1.053 Sum_probs=297.7
Q ss_pred CchhHHHHHHhhchhhcccccccccCcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhhhhhh--hccccccc-CCCcc
Q 020497 1 MVLGFISLILTFGQSYISKICIPSKVADTMLPCKADGKHDASDTSGDEHEHRRRLLWFQHRYLA--AAATSTEC-EKGSE 77 (325)
Q Consensus 1 MLLGFISLLLtv~q~~IskICIp~~~~~~~lPC~~~~~~~~~~~~~~~~~~~~~~l~~~rR~L~--~~~~~~~C-~~Gkv 77 (325)
|||||||||||++|++|+|||||++++++|+||+.+++.++.+ ++ ..+||+|+ +++++++| +||||
T Consensus 58 MlLGfiSLlLt~~q~~IskICIp~~~~~~~lPC~~~~~~~~~~-----~~------~~~r~ll~~~~~~~~~~C~~kGkv 126 (478)
T PF03094_consen 58 MLLGFISLLLTVFQNPISKICIPSSYASTMLPCKPPEESSKEG-----SS------HNRRRLLASGAAEGSDYCPKKGKV 126 (478)
T ss_pred HHHHHHHHHHHHHHHhHhHeecChhHHhcccCCCCcccccccc-----cc------hhhhhhhhhhcccccCcccccCcc
Confidence 8999999999999999999999999999999999655443321 11 14577776 34457899 46999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccCCCCCceeEeeeccccccccCCCCCC
Q 020497 78 PLITVEALHQLHILIFFLAVFHVLYSAITMMLGRLKIRGWKKWEEETSTHDYEFSNDPSRFRLTHETSFVRAHTSFWTRI 157 (325)
Q Consensus 78 pliS~e~LhQLHIFIFVLAv~HV~ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~~p~~~~~~~qt~F~~~h~~~ws~~ 157 (325)
||+|+|||||||||||||||+||+|||+||+||++|||+||+||+|+++++++.++||+|+|++||++|+|+|.++|+++
T Consensus 127 pliS~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~~ 206 (478)
T PF03094_consen 127 PLISAEGLHQLHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSKS 206 (478)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhHhhhCcCcchhhHHHHHHhHhhhhcCCCCCCcHHHHHHHHHhhccccceeechHHHHHHHHHHHhccCCcc
Q 020497 158 PFFFYVGCFFRQFFRSVSRADYLTLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWH 237 (325)
Q Consensus 158 ~~l~w~~cFfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FdFh~Yi~RsLE~DFk~VVGIS~~lW~~vviflllnv~gw~ 237 (325)
+++.|++|||||||+||+|+||+|||+|||++|++|++||||||||+||||||||+||||||++|++||+|+|+|++|||
T Consensus 207 ~~~~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~ 286 (478)
T PF03094_consen 207 PVLSWIVCFFRQFYGSVTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWH 286 (478)
T ss_pred hhHHhHHHHHHHhhccccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhccccccccccccCCCccccCCchHHHHHHHHHHHhhhHHHHHHHHH
Q 020497 238 ALFWASLIPLIIILAIGTELQSILTKMALEISERHAVVQGIPLVQGSDQYFWFGRPQLVLHLIHFALFQVLNCLFFVLIS 317 (325)
Q Consensus 238 ~yfWlsfiPlillL~VGtKLq~II~~la~ei~e~~~~v~g~~~v~psD~lFWF~rP~llL~LIhfiLFQNAFelAfF~W~ 317 (325)
+|||+||||++++|+||||||+||++||+|++|++++++|+|+|||||++|||||||+||+||||||||||||||||+|+
T Consensus 287 ~yfW~sfipl~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~ 366 (478)
T PF03094_consen 287 TYFWLSFIPLILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWI 366 (478)
T ss_pred eEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccC
Q 020497 318 DLRYLLK 324 (325)
Q Consensus 318 ~~~~~~~ 324 (325)
||+||.+
T Consensus 367 ~~~~g~~ 373 (478)
T PF03094_consen 367 WWQFGFD 373 (478)
T ss_pred HhcCCCc
Confidence 9999986
No 2
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=54.36 E-value=5.5 Score=26.99 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=7.4
Q ss_pred ccccccCCC
Q 020497 278 IPLVQGSDQ 286 (325)
Q Consensus 278 ~~~v~psD~ 286 (325)
+|+||||||
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 588999986
No 3
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=40.27 E-value=15 Score=34.98 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=27.7
Q ss_pred HHHHHHHHhhccccceeechHHHHHHHHHHHhccCCcchhhhhh
Q 020497 200 QKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWHALFWAS 243 (325)
Q Consensus 200 h~Yi~RsLE~DFk~VVGIS~~lW~~vviflllnv~gw~~yfWls 243 (325)
++|=.| +||.-.++| |..||-||+|++|.=. .+.++|++
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wms 63 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWMS 63 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 455444 899888887 7899999998775533 45556654
No 4
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=24.88 E-value=1.7e+02 Score=22.99 Aligned_cols=39 Identities=21% Similarity=0.503 Sum_probs=21.8
Q ss_pred HhccCCcchhhhhh----hHHHHHHHHHHh-----hHHHHHHHHHHHH
Q 020497 230 LLNVNGWHALFWAS----LIPLIIILAIGT-----ELQSILTKMALEI 268 (325)
Q Consensus 230 llnv~gw~~yfWls----fiPlillL~VGt-----KLq~II~~la~ei 268 (325)
++|..|.-.|-|++ .+|++++.+.-- -|+.|--+.|-|.
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aRea 56 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVARQRAREA 56 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777876 566665554432 2444455555553
No 5
>PF15444 TMEM247: Transmembrane protein 247
Probab=21.94 E-value=1.1e+02 Score=28.76 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020497 92 IFFLAVFHVLYSAITMMLGRLKI 114 (325)
Q Consensus 92 IFVLAv~HV~ys~lTm~Lg~~Ki 114 (325)
||+|---|-+||+.+++|+..|.
T Consensus 193 vfflfskhylfciaaillclikt 215 (218)
T PF15444_consen 193 VFFLFSKHYLFCIAAILLCLIKT 215 (218)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 46677779999999999999884
No 6
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=21.49 E-value=41 Score=29.53 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=18.9
Q ss_pred cccchhhhHHHHHHHHHHHH-HHHHHHHHHH
Q 020497 78 PLITVEALHQLHILIFFLAV-FHVLYSAITM 107 (325)
Q Consensus 78 pliS~e~LhQLHIFIFVLAv-~HV~ys~lTm 107 (325)
|+++ -.+.-+++.|+++|+ +|.+-..++=
T Consensus 6 p~i~-~~~~P~~i~v~~~~~~~~~~s~l~~~ 35 (168)
T PF01956_consen 6 PLIR-WVLLPITIVVFLIAILRGLISELLQK 35 (168)
T ss_pred chHh-hhhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 5666 667778889999985 4444444433
No 7
>PF09060 L27_N: L27_N; InterPro: IPR015145 The L27_N domain plays a role in the biogenesis of tight junctions and in the establishment of cell polarity in epithelial cells. Each L27_N domain consists of three alpha-helices, the first two of which form an antiparallel coiled-coil. Two L27 domains come together to form a four-helical bundle with the antiparallel coiled-coils formed by the first two helices. The third helix of each domain forms another coiled-coil packing at one end of the four-helix bundle, creating a large hydrophobic interface: the hydrophobic interactions are the major force that drives heterodimer formation []. ; PDB: 1Y76_B 3UIT_B 1VF6_C.
Probab=18.14 E-value=1.3e+02 Score=22.39 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhhhHHH
Q 020497 294 QLVLHLIHFALFQVLNCL 311 (325)
Q Consensus 294 ~llL~LIhfiLFQNAFel 311 (325)
.++|.|.|=.=|||||-|
T Consensus 26 ~lllqLl~~~dFq~A~~I 43 (49)
T PF09060_consen 26 ELLLQLLQNSDFQNAFKI 43 (49)
T ss_dssp HHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHhhHhHHHHHHH
Confidence 688999999999999976
No 8
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=17.89 E-value=79 Score=29.85 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=25.8
Q ss_pred hccccceeechHHHHHHHHHHHhccCCcchhhhhhhHH---HHHHHHHHhhHHH
Q 020497 209 DDFKIVVGVSPVLWTSFVVFLLLNVNGWHALFWASLIP---LIIILAIGTELQS 259 (325)
Q Consensus 209 ~DFk~VVGIS~~lW~~vviflllnv~gw~~yfWlsfiP---lillL~VGtKLq~ 259 (325)
|-...+-||.|-+|++.-+-.++. .-.|+.++= .-+++=||+|+--
T Consensus 158 egi~~~SGiaWalWi~gF~~Ff~~-----P~~Wl~~L~lAg~gl~iKV~sKlgL 206 (212)
T PF09878_consen 158 EGIEGVSGIAWALWIAGFIGFFLF-----PQYWLLALMLAGCGLLIKVGSKLGL 206 (212)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHHh-----HHHHHHHHHHHhcchhhhhhhhhhh
Confidence 345667788888888765433332 234554332 2355666777643
No 9
>PF10751 DUF2535: Protein of unknown function (DUF2535); InterPro: IPR019687 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=17.21 E-value=91 Score=25.48 Aligned_cols=17 Identities=35% Similarity=0.872 Sum_probs=13.9
Q ss_pred CCCCCCcHHHHHHHHHh
Q 020497 192 APGSKFNFQKYIKRSLE 208 (325)
Q Consensus 192 ~~~~~FdFh~Yi~RsLE 208 (325)
.+...|.|++|++|.|-
T Consensus 50 ~~~~vYSFreYlKr~lK 66 (83)
T PF10751_consen 50 SPRKVYSFREYLKRVLK 66 (83)
T ss_pred CCCceeeHHHHHHHhcC
Confidence 34568999999999984
No 10
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=16.84 E-value=3.1e+02 Score=21.90 Aligned_cols=31 Identities=23% Similarity=0.648 Sum_probs=22.5
Q ss_pred HHHHHHHHhccCCcchhhhhhhHHHHHHHHHHhhHHHHHH
Q 020497 223 TSFVVFLLLNVNGWHALFWASLIPLIIILAIGTELQSILT 262 (325)
Q Consensus 223 ~~vviflllnv~gw~~yfWlsfiPlillL~VGtKLq~II~ 262 (325)
+|.++|+++ . ++..|++++.++|--.|.++.
T Consensus 19 LF~ilfIvl--------m-ipI~pll~~~~i~~~~E~l~e 49 (72)
T PF13198_consen 19 LFFILFIVL--------M-IPISPLLFVWIIGKIIEPLFE 49 (72)
T ss_pred HHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHH
Confidence 456666655 2 788999999999986666543
Done!