Query 020497
Match_columns 325
No_of_seqs 139 out of 237
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:52:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 21.6 1.4E+02 0.0047 22.7 4.9 23 113-135 40-62 (79)
2 1wy3_A Villin; structural prot 14.6 25 0.00086 23.2 -0.7 12 208-219 3-14 (35)
3 1und_A Advillin, P92; actin bi 14.2 26 0.0009 23.3 -0.7 12 208-219 5-16 (37)
4 2kv9_B Integrin beta-3; platel 11.7 75 0.0026 24.3 1.0 27 109-135 32-58 (75)
5 1jek_B ENV polyprotein; envelo 11.7 62 0.0021 21.6 0.5 11 116-126 1-11 (36)
6 1vf6_C Maguk P55 subfamily mem 10.9 1.2E+02 0.0042 22.9 2.0 18 294-311 40-57 (72)
7 1iyc_A Scarabaecin; antifungal 10.6 79 0.0027 20.6 0.7 8 70-77 16-23 (36)
8 2xz2_A CSTF-50, isoform B; RNA 9.9 82 0.0028 23.6 0.7 14 274-288 42-55 (66)
9 2ztb_A Crystal protein; beta-h 8.9 58 0.002 30.3 -0.6 17 281-297 203-219 (252)
10 3si5_X Protein CASC5; BUBR1-bl 8.9 1.4E+02 0.0047 18.2 1.2 12 195-206 9-20 (24)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.60 E-value=1.4e+02 Score=22.69 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=16.5
Q ss_pred HHhhhhhhhhhhcccccccCCCC
Q 020497 113 KIRGWKKWEEETSTHDYEFSNDP 135 (325)
Q Consensus 113 Kir~Wk~WE~e~~~~~~~~~~~p 135 (325)
.-|.++++|+|-++...+..++|
T Consensus 40 DrrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 40 DRKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHhcccccCCCC
Confidence 37899999999876655444555
No 2
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=14.56 E-value=25 Score=23.18 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=10.6
Q ss_pred hhccccceeech
Q 020497 208 EDDFKIVVGVSP 219 (325)
Q Consensus 208 E~DFk~VVGIS~ 219 (325)
++||+.|.|+|-
T Consensus 3 d~dF~~vFgmsr 14 (35)
T 1wy3_A 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 689999999985
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=14.16 E-value=26 Score=23.33 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.7
Q ss_pred hhccccceeech
Q 020497 208 EDDFKIVVGVSP 219 (325)
Q Consensus 208 E~DFk~VVGIS~ 219 (325)
++||+.|.|+|-
T Consensus 5 d~dF~~vFgmsr 16 (37)
T 1und_A 5 EQDFVSVFGITR 16 (37)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 689999999985
No 4
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=11.70 E-value=75 Score=24.34 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=18.3
Q ss_pred HHHHHHhhhhhhhhhhcccccccCCCC
Q 020497 109 LGRLKIRGWKKWEEETSTHDYEFSNDP 135 (325)
Q Consensus 109 Lg~~Kir~Wk~WE~e~~~~~~~~~~~p 135 (325)
+.+---|.+++.|+|-++...+..++|
T Consensus 32 ~~i~DrREyaKFEkEr~~akw~~~eNP 58 (75)
T 2kv9_B 32 ITIHDRKEFAKFEEERARAKWDTANNP 58 (75)
T ss_dssp HHHHHCHHHHHHHHHHHHGGGSSTTSH
T ss_pred HhhHHHHHHHHHHHHHHHhccccccCC
Confidence 334446899999999876655544555
No 5
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=11.69 E-value=62 Score=21.59 Aligned_cols=11 Identities=45% Similarity=1.241 Sum_probs=7.6
Q ss_pred hhhhhhhhhcc
Q 020497 116 GWKKWEEETST 126 (325)
Q Consensus 116 ~Wk~WE~e~~~ 126 (325)
.|..||+|+..
T Consensus 1 TWqqWereI~~ 11 (36)
T 1jek_B 1 XWQQWEEEIEQ 11 (36)
T ss_dssp -CHHHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 38888888753
No 6
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=10.85 E-value=1.2e+02 Score=22.89 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhhhHHH
Q 020497 294 QLVLHLIHFALFQVLNCL 311 (325)
Q Consensus 294 ~llL~LIhfiLFQNAFel 311 (325)
.+++.|.|=.=|||||.+
T Consensus 40 ~lllqL~~~~DFQ~A~kI 57 (72)
T 1vf6_C 40 SLLLQLVQNRDFQNAFKI 57 (72)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 688899999999999976
No 7
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=10.64 E-value=79 Score=20.60 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=6.5
Q ss_pred cccCCCcc
Q 020497 70 TECEKGSE 77 (325)
Q Consensus 70 ~~C~~Gkv 77 (325)
..|+||||
T Consensus 16 sncpkgkv 23 (36)
T 1iyc_A 16 SNCPKGKV 23 (36)
T ss_dssp SCCCSSCE
T ss_pred cCCCCcce
Confidence 46999987
No 8
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=9.91 E-value=82 Score=23.65 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=10.4
Q ss_pred ccccccccccCCCcc
Q 020497 274 VVQGIPLVQGSDQYF 288 (325)
Q Consensus 274 ~v~g~~~v~psD~lF 288 (325)
.++-+| .-|||.||
T Consensus 42 ~v~~~~-c~PSdrL~ 55 (66)
T 2xz2_A 42 LVKADQ-CAPSERLL 55 (66)
T ss_dssp HHTCCC-CCCCCHHH
T ss_pred hcCCCC-CCcHHHHH
Confidence 455667 89999775
No 9
>2ztb_A Crystal protein; beta-hairpin, toxin; 2.38A {Bacillus thuringiensis serovar dakota}
Probab=8.93 E-value=58 Score=30.27 Aligned_cols=17 Identities=41% Similarity=0.847 Sum_probs=12.7
Q ss_pred cccCCCccccCCchHHH
Q 020497 281 VQGSDQYFWFGRPQLVL 297 (325)
Q Consensus 281 v~psD~lFWF~rP~llL 297 (325)
|-|++++|||..++-+|
T Consensus 203 v~~~gHyfWf~~v~~ll 219 (252)
T 2ztb_A 203 VGPGGHYFWFNPARDVL 219 (252)
T ss_dssp ETTTTEEEEEEEHHHHS
T ss_pred ccCCCcEEEeCCHHHHh
Confidence 45788888888877665
No 10
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=8.86 E-value=1.4e+02 Score=18.18 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=10.0
Q ss_pred CCCcHHHHHHHH
Q 020497 195 SKFNFQKYIKRS 206 (325)
Q Consensus 195 ~~FdFh~Yi~Rs 206 (325)
.|.||.++|+|-
T Consensus 9 kKinfndFIKRL 20 (24)
T 3si5_X 9 NKIDFNDFIKRL 20 (26)
T ss_pred hhccHHHHHHHH
Confidence 388999999984
Done!