BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020499
         (325 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EJ6|A Chain A, Reovirus Core
 pdb|2CSE|U Chain U, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1289

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 93  RPLWSSP---SKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDE 149
           +PL   P    K++   PP ++      + +  IVD + R FPS D+  +    D VVD 
Sbjct: 526 QPLVIEPWIQGKISGVPPPSSVRQFGYDVARGAIVD-LARPFPSGDYQFVYSDVDQVVDG 584

Query: 150 WKDL 153
             DL
Sbjct: 585 HDDL 588


>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
           Aerophilum
 pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
           Aerophilum
          Length = 409

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 108 PMNLLAIAAGIKQKKIVD---QIVRKFPSKDF-VVMLFHYDGVVDEWKDLVWADRAIHVS 163
           P NL AIA+ I+Q+ +     Q  + +P+ DF   + F+Y G+  E+   ++A   +   
Sbjct: 316 PQNLFAIASAIEQEVLSHPYFQQRKLYPNVDFWSGIAFYYMGIPYEYFTPIFAMSRVVGW 375

Query: 164 AANQTKWWFAKRFLHP 179
            A+  ++W   R   P
Sbjct: 376 VAHVLEYWENNRIFRP 391


>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
 pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
 pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
 pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
 pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
 pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
 pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
          Length = 350

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 60  SAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIK 119
           + K    +     LP  EA+ EG    + N+EM P W++    N  R P  ++ +  G+ 
Sbjct: 56  TGKSTAVRALAALLPEIEAV-EGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVS 114

Query: 120 QKKIV 124
           + ++V
Sbjct: 115 EDRVV 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,135,123
Number of Sequences: 62578
Number of extensions: 413119
Number of successful extensions: 683
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 20
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)