Query 020499
Match_columns 325
No_of_seqs 125 out of 146
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 02:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 4E-121 8E-126 863.0 22.0 250 70-325 4-253 (294)
2 cd04185 GT_2_like_b Subfamily 91.5 0.62 1.3E-05 39.7 6.4 97 183-324 78-174 (202)
3 TIGR01556 rhamnosyltran L-rham 90.7 1.1 2.3E-05 41.0 7.6 127 183-323 72-201 (281)
4 cd04186 GT_2_like_c Subfamily 90.6 0.73 1.6E-05 36.9 5.7 92 184-324 74-166 (166)
5 cd02526 GT2_RfbF_like RfbF is 84.9 2.2 4.8E-05 37.0 5.6 48 273-323 157-204 (237)
6 cd02510 pp-GalNAc-T pp-GalNAc- 77.2 14 0.00031 34.1 8.4 137 183-323 82-225 (299)
7 cd02520 Glucosylceramide_synth 77.1 3.2 7E-05 35.7 3.9 93 183-323 85-177 (196)
8 cd02525 Succinoglycan_BP_ExoA 73.3 11 0.00024 32.5 6.2 127 183-324 80-209 (249)
9 cd06442 DPM1_like DPM1_like re 73.0 3.6 7.8E-05 35.3 3.1 35 183-217 77-111 (224)
10 cd04195 GT2_AmsE_like GT2_AmsE 71.2 2.7 5.7E-05 35.6 1.9 119 183-322 79-200 (201)
11 PF12621 DUF3779: Phosphate me 69.9 3.6 7.8E-05 33.7 2.3 52 174-230 34-87 (95)
12 cd06433 GT_2_WfgS_like WfgS an 66.0 9.9 0.00022 31.3 4.2 36 183-218 74-110 (202)
13 PF01762 Galactosyl_T: Galacto 64.3 23 0.00049 31.3 6.4 177 92-306 6-186 (195)
14 PLN02726 dolichyl-phosphate be 58.9 18 0.00039 32.3 4.9 37 183-219 92-128 (243)
15 cd06434 GT2_HAS Hyaluronan syn 56.8 6.5 0.00014 34.0 1.6 41 183-223 76-116 (235)
16 COG1216 Predicted glycosyltran 53.8 58 0.0012 30.7 7.5 132 185-323 85-220 (305)
17 PF00535 Glycos_transf_2: Glyc 52.3 11 0.00024 29.6 2.2 38 183-220 77-114 (169)
18 cd06421 CESA_CelA_like CESA_Ce 50.7 13 0.00029 31.9 2.6 124 183-323 83-211 (234)
19 PF13641 Glyco_tranf_2_3: Glyc 48.9 8 0.00017 33.4 0.9 126 183-323 85-210 (228)
20 cd04188 DPG_synthase DPG_synth 45.0 12 0.00027 32.2 1.5 36 183-218 81-116 (211)
21 cd06435 CESA_NdvC_like NdvC_li 44.4 14 0.0003 32.2 1.7 37 184-220 84-120 (236)
22 PF12996 DUF3880: DUF based on 33.9 20 0.00042 28.0 0.9 25 179-213 13-37 (79)
23 cd06437 CESA_CaSu_A2 Cellulose 33.9 25 0.00055 30.8 1.7 127 183-323 86-213 (232)
24 cd00761 Glyco_tranf_GTA_type G 33.6 38 0.00082 25.7 2.4 36 184-219 77-113 (156)
25 PTZ00260 dolichyl-phosphate be 32.2 64 0.0014 31.4 4.3 191 107-317 69-286 (333)
26 PF07976 Phe_hydrox_dim: Pheno 31.9 68 0.0015 28.5 4.1 72 77-157 34-125 (169)
27 cd06423 CESA_like CESA_like is 31.6 32 0.00069 26.8 1.8 38 184-221 78-116 (180)
28 PF09451 ATG27: Autophagy-rela 30.3 44 0.00095 31.8 2.8 26 18-43 201-226 (268)
29 PF13506 Glyco_transf_21: Glyc 29.6 37 0.0008 30.0 2.0 117 183-317 30-148 (175)
30 cd04184 GT2_RfbC_Mx_like Myxoc 28.9 46 0.00099 28.0 2.4 37 183-219 82-119 (202)
31 cd04196 GT_2_like_d Subfamily 26.6 52 0.0011 27.6 2.3 45 273-322 158-202 (214)
32 cd02522 GT_2_like_a GT_2_like_ 26.0 49 0.0011 28.2 2.1 40 183-222 71-110 (221)
33 PRK10927 essential cell divisi 25.3 55 0.0012 32.9 2.5 26 22-47 34-59 (319)
34 cd06439 CESA_like_1 CESA_like_ 24.7 45 0.00098 29.3 1.7 40 183-222 108-147 (251)
35 cd04192 GT_2_like_e Subfamily 24.5 59 0.0013 27.6 2.3 37 183-219 81-117 (229)
36 TIGR02165 cas_GSU0054 CRISPR-a 24.3 15 0.00032 37.6 -1.7 34 258-303 75-108 (465)
37 PLN02867 Probable galacturonos 24.0 33 0.00072 36.6 0.8 34 174-208 334-367 (535)
38 KOG2547 Ceramide glucosyltrans 23.2 1.3E+02 0.0028 31.4 4.7 80 108-210 113-196 (431)
39 KOG1555 26S proteasome regulat 23.2 47 0.001 33.3 1.6 41 254-294 80-120 (316)
40 PF14538 Raptor_N: Raptor N-te 22.6 63 0.0014 28.8 2.2 11 136-146 90-100 (154)
41 TIGR03469 HonB hopene-associat 22.0 83 0.0018 30.8 3.1 33 185-217 134-166 (384)
42 cd06427 CESA_like_2 CESA_like_ 20.8 90 0.002 27.7 2.8 38 183-220 83-122 (241)
43 COG3040 Blc Bacterial lipocali 20.2 82 0.0018 29.2 2.4 32 186-217 133-164 (174)
44 KOG2264 Exostosin EXT1L [Signa 20.1 1.3E+02 0.0028 33.1 4.2 96 116-212 631-752 (907)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=3.6e-121 Score=863.00 Aligned_cols=250 Identities=62% Similarity=1.133 Sum_probs=242.9
Q ss_pred cCCCCCCCCCCCCceecCCCcceecCCCCCCCCCCCCCCCcEEEEEeccccccchhHHhhcCCCCCcEEEEEEecCccCc
Q 020499 70 QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDE 149 (325)
Q Consensus 70 q~~~~g~e~Lp~giv~~~sd~~~r~Lwg~p~~~~~~~~~k~Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmLfhYDg~vd~ 149 (325)
||+|+|+|+||+|||+++||||||||||+|+++. +.++|||||||||+|||++||++|+|| ++|||||||||||+||+
T Consensus 4 ~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~-~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~ 81 (294)
T PF05212_consen 4 PCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL-PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDE 81 (294)
T ss_pred CCCCCccccCCCCccccCCCceeeecCCCccccc-cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCc
Confidence 8999999999999999999999999999999886 568899999999999999999999999 99999999999999999
Q ss_pred cccccccCceeEEEeecccceeeeccccCcchhccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCCCCccc
Q 020499 150 WKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVH 229 (325)
Q Consensus 150 w~d~ews~~aiHv~a~kqtKWwfakrfLhPdiva~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~~s~~~ 229 (325)
|+|||||++||||+++|||||||||||||||||++|||||||||||+||+|+|+|||+|||+|||||||||||+++|++|
T Consensus 82 w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~ 161 (294)
T PF05212_consen 82 WDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIH 161 (294)
T ss_pred hhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred cceeeeecCcccceeeeeccCCCCCCCCCCCCCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCC
Q 020499 230 HPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFY 309 (325)
Q Consensus 230 h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~ 309 (325)
|+||+|++++++||. .++.+.|.+++++||||||||||||||||+|||||||||||||+|||||||+|+||+ ++++
T Consensus 162 ~~iT~R~~~~~vhr~---~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~~~~ 237 (294)
T PF05212_consen 162 HPITKRRPDSEVHRK---TRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-GDRH 237 (294)
T ss_pred eeEEeecCCceeEec---cCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-cccc
Confidence 999999999999993 567778888999999999999999999999999999999999999999999999999 6889
Q ss_pred CCeEEEeeeeEEecCC
Q 020499 310 KPITSISHSLCCINGI 325 (325)
Q Consensus 310 ~kiGVVDa~~V~H~~~ 325 (325)
+||||||||+|+|+|+
T Consensus 238 ~kiGVVDs~~VvH~gv 253 (294)
T PF05212_consen 238 KKIGVVDSQYVVHTGV 253 (294)
T ss_pred ccEEEEeeEEEEEcCC
Confidence 9999999999999985
No 2
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.49 E-value=0.62 Score=39.67 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=63.2
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCCCCccccceeeeecCcccceeeeeccCCCCCCCCCCCCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 262 (325)
+.+||+++.|+|..++.--++++.+.+++.+..+..|..-...+ +
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 122 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-----------------------------------S 122 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-----------------------------------c
Confidence 57999999999999988777787777764455444433221101 1
Q ss_pred ccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEecC
Q 020499 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCING 324 (325)
Q Consensus 263 ctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H~~ 324 (325)
+.++ +++|++|+.+ ..+ .+.-..||=|..+.+-+.. ...+| .+.+..+.|..
T Consensus 123 ~~~~------~~~~~~~~~~-g~~-~~~~~~~~eD~~~~~r~~~-~G~~i-~~~~~~~~h~~ 174 (202)
T cd04185 123 FVGV------LISRRVVEKI-GLP-DKEFFIWGDDTEYTLRASK-AGPGI-YVPDAVVVHKT 174 (202)
T ss_pred eEEE------EEeHHHHHHh-CCC-ChhhhccchHHHHHHHHHH-cCCcE-EecceEEEEcc
Confidence 1222 4788888866 333 3334578878777654432 35678 99999999864
No 3
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=90.70 E-value=1.1 Score=40.97 Aligned_cols=127 Identities=15% Similarity=0.100 Sum_probs=70.8
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhh--CCccccCcc-CCCCCccccceeeeecCcccceeeeeccCCCCCCCCCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPAL-DPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 259 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~--gLeISQPAL-d~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~ 259 (325)
+.+|||++.|+|..++.-.++++++.+++. +.-+..|.. +.+ +....+..... ... .+... ... .+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~~~-------~~~-~~ 140 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRG-TSRRLPAIHLD-GLL-LRQIS-------LDG-LT 140 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCC-CcccCCceeec-ccc-eeeec-------ccc-cC
Confidence 379999999999999988888999888776 566777764 432 11122221111 100 00000 000 00
Q ss_pred CCCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEec
Q 020499 260 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 260 ~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
.+.-+.++=.-..+++|++++.+ .++..++ -.++-|..|..=+.. ...+|.++....+.|.
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~i-G~fde~~-fi~~~D~e~~~R~~~-~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRL-GMMDEEL-FIDHVDTEWSLRAQN-YGIPLYIDPDIVLEHR 201 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHh-CCccHhh-cccchHHHHHHHHHH-CCCEEEEeCCEEEEEe
Confidence 00000111000236899999987 4453443 235678776543332 3568999998888885
No 4
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.60 E-value=0.73 Score=36.92 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=59.2
Q ss_pred cccEEEEecccccCCCCChHHHHHHHHhh-CCccccCccCCCCCccccceeeeecCcccceeeeeccCCCCCCCCCCCCC
Q 020499 184 EYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (325)
Q Consensus 184 ~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~-gLeISQPALd~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 262 (325)
.+|||++.|+|...+...+.++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence 79999999999998877777777654432 22222111
Q ss_pred ccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEecC
Q 020499 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCING 324 (325)
Q Consensus 263 ctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H~~ 324 (325)
+=.-+.+|++++++.+ .-+ ++.-..+|-|..+...+.. ...+|..+....+.|.+
T Consensus 112 ----~~~~~~~~~~~~~~~~-~~~-~~~~~~~~eD~~~~~~~~~-~g~~i~~~~~~~~~h~~ 166 (166)
T cd04186 112 ----VSGAFLLVRREVFEEV-GGF-DEDFFLYYEDVDLCLRARL-AGYRVLYVPQAVIYHHG 166 (166)
T ss_pred ----CceeeEeeeHHHHHHc-CCC-ChhhhccccHHHHHHHHHH-cCCeEEEccceEEEecC
Confidence 0113447899999865 233 2222237778777765432 35789999999999964
No 5
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=84.89 E-value=2.2 Score=37.02 Aligned_cols=48 Identities=15% Similarity=-0.044 Sum_probs=30.7
Q ss_pred cccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEec
Q 020499 273 VFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 273 VFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
+|+|++++.+= .+..++ ...|-|+.+..-+. ....++..+....|.|.
T Consensus 157 ~~rr~~~~~~g-gfd~~~-~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 157 LISLEALEKVG-GFDEDL-FIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHE 204 (237)
T ss_pred EEcHHHHHHhC-CCCHHH-cCccchHHHHHHHH-HcCCcEEEEcCeEEEec
Confidence 58999999873 332232 23355777665443 23568988888888775
No 6
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=77.22 E-value=14 Score=34.13 Aligned_cols=137 Identities=14% Similarity=0.066 Sum_probs=72.2
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCCCC-ccccceeeee-c---CcccceeeeeccCCCCCCCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKS-EVHHPITARR-R---NSKAHRRMYKYKGSGRCDDY 257 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~~s-~~~h~iT~R~-~---~~~vHr~~~~~~~~~~C~~~ 257 (325)
+..|||.+.|.|..++.--++++++.+.+..-.+.-|.+..-.+ ...++-.... . ...++...........+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67899999999999999999999999998877777776543211 1222211110 0 00111100000000000111
Q ss_pred CCCCCccceEeeeeccccHHHHHHHhhhhcCCCcceeh-hhhhhh-hhhccCCCCCeEEEeeeeEEec
Q 020499 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG-LDIQLG-YCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 258 ~~~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWG-LD~~~~-~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
...|.-+.++-..+=+++|++|+-+ ..+... ...|| =|.-+. ++.+ .+.+|-++-...|.|-
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~v-GgfDe~-~~~~~~ED~Dl~~R~~~--~G~~i~~~p~a~v~H~ 225 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLEL-GGYDEG-MDIWGGENLELSFKVWQ--CGGSIEIVPCSRVGHI 225 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHh-CCCCCc-ccccCchhHHHHHHHHH--cCCeEEEeeccEEEEe
Confidence 1122222333333446899999877 344333 35555 344433 2322 2457888888888884
No 7
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=77.12 E-value=3.2 Score=35.70 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=53.2
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCCCCccccceeeeecCcccceeeeeccCCCCCCCCCCCCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 262 (325)
+.+|||++.|.|..++.--++++++... +|..+--.|. |
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~-------~~~~~~v~~~--------------------------~-------- 123 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLM-------DPGVGLVTCL--------------------------C-------- 123 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhh-------CCCCCeEEee--------------------------c--------
Confidence 6799999999998876666666555432 2322211000 0
Q ss_pred ccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEec
Q 020499 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 263 ctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
++ ..+=+|+|++++.+=.+ .....-.+=|+.+..-+.. ...+|..++...+.|.
T Consensus 124 ~~----g~~~~~r~~~~~~~ggf--~~~~~~~~eD~~l~~rl~~-~G~~i~~~~~~~~~~~ 177 (196)
T cd02520 124 AF----GKSMALRREVLDAIGGF--EAFADYLAEDYFLGKLIWR-LGYRVVLSPYVVMQPL 177 (196)
T ss_pred cc----CceeeeEHHHHHhccCh--HHHhHHHHHHHHHHHHHHH-cCCeEEEcchheeccC
Confidence 01 12337889998866322 1111223568888766543 3678988887655443
No 8
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=73.26 E-value=11 Score=32.53 Aligned_cols=127 Identities=10% Similarity=-0.006 Sum_probs=66.3
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCCCCccccceeeeecCcccceeeeeccCCCCCCCC-C-CC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDY-S-TA 260 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~C~~~-~-~~ 260 (325)
+.+|||.+.|+|..++.-.+++.++..++.+..+.+............. +.......... .......... . ..
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~ 154 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQK-AIAVAQSSPLG----SGGSAYRGGAVKIGY 154 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHH-HHHHHhhchhc----cCCcccccccccccc
Confidence 4799999999999998888899998888877777665432211111010 00000000000 0000000000 0 00
Q ss_pred CCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhh-hhccCCCCCeEEEeeeeEEecC
Q 020499 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGY-CAQVIFYKPITSISHSLCCING 324 (325)
Q Consensus 261 ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~-c~q~~~~~kiGVVDa~~V~H~~ 324 (325)
.++.+.. +|+|++|+.+ ..+.... ..|-|+.+.. +.+ ...++..+....+.|..
T Consensus 155 ~~~~~~~-----~~~~~~~~~~-g~~~~~~--~~~eD~~l~~r~~~--~G~~~~~~~~~~~~~~~ 209 (249)
T cd02525 155 VDTVHHG-----AYRREVFEKV-GGFDESL--VRNEDAELNYRLRK--AGYKIWLSPDIRVYYYP 209 (249)
T ss_pred ccccccc-----eEEHHHHHHh-CCCCccc--CccchhHHHHHHHH--cCcEEEEcCCeEEEEcC
Confidence 0111111 5799999876 2332232 3466776663 443 35688888888888753
No 9
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=73.01 E-value=3.6 Score=35.28 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=24.4
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccc
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 217 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeIS 217 (325)
+.-|||++.|+|..++.-.++++++.+.+.+-.+.
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 45699999999977765556677776555554443
No 10
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=71.22 E-value=2.7 Score=35.56 Aligned_cols=119 Identities=10% Similarity=0.014 Sum_probs=63.6
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhh-CCccccCccCCC--CCccccceeeeecCcccceeeeeccCCCCCCCCCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPV--KSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 259 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~-gLeISQPALd~~--~s~~~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~ 259 (325)
+.+|||++.|+|..++.-.+++.++.++++ +..+..+....- .+..++... .+. ..+..++. ....|.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~-~~~~~~---- 149 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR--LPT--SHDDILKF-ARRRSP---- 149 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc--CCC--CHHHHHHH-hccCCC----
Confidence 679999999999888877788888877543 566665543210 121111111 000 00000000 001111
Q ss_pred CCCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEe
Q 020499 260 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCI 322 (325)
Q Consensus 260 ~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H 322 (325)
+..++=+|.|++++.+-.+- .. -++-|+.+...+- ....++..+....+.+
T Consensus 150 -------~~~~~~~~rr~~~~~~g~~~-~~---~~~eD~~~~~r~~-~~g~~~~~~~~~~~~y 200 (201)
T cd04195 150 -------FNHPTVMFRKSKVLAVGGYQ-DL---PLVEDYALWARML-ANGARFANLPEILVKA 200 (201)
T ss_pred -------CCChHHhhhHHHHHHcCCcC-CC---CCchHHHHHHHHH-HcCCceecccHHHhhc
Confidence 11112268999998875443 22 4677888876543 2356788776655543
No 11
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=69.91 E-value=3.6 Score=33.67 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=40.4
Q ss_pred ccccCcchhccccEEEEecccccCCCCChHHHHHHHHhhCCccccCc--cCCCCCcccc
Q 020499 174 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA--LDPVKSEVHH 230 (325)
Q Consensus 174 krfLhPdiva~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPA--Ld~~~s~~~h 230 (325)
.-|+||.+.++--.|||+-|++|+-... ++-.++.|+.||.-+ |+. +|.+.|
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA~lde-kgkv~~ 87 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGATLDE-KGKVVW 87 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCeEEcc-CCCEEE
Confidence 4499999999999999999999997644 445677788888766 555 355554
No 12
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.98 E-value=9.9 Score=31.29 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=26.2
Q ss_pred ccccEEEEecccccCCCCChHHHHHHH-HhhCCcccc
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQ 218 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Iv-r~~gLeISQ 218 (325)
+..|||++.|+|..++.-.+.+.++.. +..+..+..
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVY 110 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEE
Confidence 568999999999999888888887444 333444443
No 13
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=64.34 E-value=23 Score=31.25 Aligned_cols=177 Identities=18% Similarity=0.227 Sum_probs=94.8
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEecccc--ccchhHHhhcCCCCCcEEEEEEecCccCccccccccCceeEEEeecccc
Q 020499 92 MRPLWSSPSKLNNQRPPMNLLAIAAGIKQ--KKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTK 169 (325)
Q Consensus 92 ~r~Lwg~p~~~~~~~~~k~Lla~~VG~kq--k~~Vd~~v~kf~~~nF~vmLfhYDg~vd~w~d~ews~~aiHv~a~kqtK 169 (325)
+|.-||++.... ..+.-+.+-+|... ...++..|++-....=||+++-+ +|.+..+.. +.+. ..+
T Consensus 6 IR~TW~~~~~~~---~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt~--K~~~-----~~~ 72 (195)
T PF01762_consen 6 IRETWGNQRNFK---GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLTL--KTLA-----GLK 72 (195)
T ss_pred HHHHHhcccccC---CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhhH--HHHH-----HHH
Confidence 467788776432 24455666678777 45567766654233337776543 454544431 1111 123
Q ss_pred eeeeccccCcchhccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCCCCccccceeeeecCcccc--eeeee
Q 020499 170 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAH--RRMYK 247 (325)
Q Consensus 170 WwfakrfLhPdiva~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~~s~~~h~iT~R~~~~~vH--r~~~~ 247 (325)
|- .+.+ .+++||+.-|||+-| ++.++++..++.-.+.+.+.+.. +.....-..|++.++.+ ...|.
T Consensus 73 w~-~~~c------~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g--~~~~~~~~~r~~~~kw~v~~~~y~ 140 (195)
T PF01762_consen 73 WA-SKHC------PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYG--GCIKNGPPIRDPSSKWYVSEEEYP 140 (195)
T ss_pred HH-HhhC------CchhheeecCcEEEE---ehHHhhhhhhhcccCcccccccc--ccccCCccccccccCceeeeeecc
Confidence 32 2212 358999999999987 66777777776633333333333 22223233444443311 11111
Q ss_pred ccCCCCCCCCCCCCCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhcc
Q 020499 248 YKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQV 306 (325)
Q Consensus 248 ~~~~~~C~~~~~~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~ 306 (325)
...-|| |....+=++|+++-+.+....+.- ..-+-=|--+|.|++.
T Consensus 141 ---------~~~yP~---y~~G~~yvls~~~v~~i~~~~~~~-~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 141 ---------DDYYPP---YCSGGGYVLSSDVVKRIYKASSHT-PFFPLEDVFIGILAEK 186 (195)
T ss_pred ---------cccCCC---cCCCCeEEecHHHHHHHHHHhhcC-CCCCchHHHHHHHHHH
Confidence 112333 334567789999998877655322 2333446666888764
No 14
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=58.85 E-value=18 Score=32.33 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=30.0
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQP 219 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQP 219 (325)
+..|||++.|.|...+.-.++++++.+.+.+.++...
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 5789999999999888888888888887777666443
No 15
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=56.80 E-value=6.5 Score=34.03 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=35.5
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 223 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~ 223 (325)
+.+|||++.|+|..++.-.+++.++.+...+..+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 57999999999999998889999999888888888876543
No 16
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=53.84 E-value=58 Score=30.69 Aligned_cols=132 Identities=13% Similarity=0.013 Sum_probs=76.0
Q ss_pred ccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCCCCccccceeeeecCcccceeeeeccCCCCCCC----CCCC
Q 020499 185 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDD----YSTA 260 (325)
Q Consensus 185 YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~C~~----~~~~ 260 (325)
|+|++++++|..++.-.++++++.+++.+-...=+++-.+...-.+. ..+.......... .....+.. ....
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 160 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYI-DRRGGESDGLTGG---WRASPLLEIAPDLSSY 160 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcch-heecccccccccc---ceecccccccccccch
Confidence 44999999999999999999999999998776666643321111111 1111110000000 00001111 0111
Q ss_pred CCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEec
Q 020499 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 261 ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
+.+.+++..-+-.++|++++.+=. + ..--=.+.-|.-|.+=+.. ...++..+=.-.|.|.
T Consensus 161 ~~~~~~~~G~~~li~~~~~~~vG~-~-de~~F~y~eD~D~~~R~~~-~G~~i~~~p~a~i~H~ 220 (305)
T COG1216 161 LEVVASLSGACLLIRREAFEKVGG-F-DERFFIYYEDVDLCLRARK-AGYKIYYVPDAIIYHK 220 (305)
T ss_pred hhhhhhcceeeeEEcHHHHHHhCC-C-CcccceeehHHHHHHHHHH-cCCeEEEeeccEEEEe
Confidence 234446777778899999998854 3 2234455667766654432 2447888877777774
No 17
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=52.30 E-value=11 Score=29.61 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=29.5
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCc
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPA 220 (325)
+..|||++.|+|..++.-.++++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 56779999999999998899999999999766554333
No 18
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=50.69 E-value=13 Score=31.89 Aligned_cols=124 Identities=11% Similarity=-0.051 Sum_probs=68.8
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHh-hCCccccCccC--CCCCccccceeeeec--CcccceeeeeccCCCCCCCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKD-EGLEISQPALD--PVKSEVHHPITARRR--NSKAHRRMYKYKGSGRCDDY 257 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~-~gLeISQPALd--~~~s~~~h~iT~R~~--~~~vHr~~~~~~~~~~C~~~ 257 (325)
+.+|||.+.|+|..++.-.++++++.+.+ .++.+.|+... ...+. ..++.+.. ...+.+.+.. +...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~--- 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPF--DWLADGAPNEQELFYGVIQP--GRDRW--- 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcc--hhHHHHHHHHHHHHHHHHHH--HHhhc---
Confidence 47999999999999999889999998887 67777776421 11111 00110000 0000000000 00000
Q ss_pred CCCCCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEec
Q 020499 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 258 ~~~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
++. ++=.+.=+|+|++++.+-.+- . ...+-|+.+..=+.. ...+|..++...+.|.
T Consensus 156 ----~~~-~~~g~~~~~r~~~~~~ig~~~-~---~~~~eD~~l~~r~~~-~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 156 ----GAA-FCCGSGAVVRREALDEIGGFP-T---DSVTEDLATSLRLHA-KGWRSVYVPEPLAAGL 211 (234)
T ss_pred ----CCc-eecCceeeEeHHHHHHhCCCC-c---cceeccHHHHHHHHH-cCceEEEecCcccccc
Confidence 111 122344478999999874432 2 345778888843321 3467888887776664
No 19
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=48.89 E-value=8 Score=33.41 Aligned_cols=126 Identities=17% Similarity=0.072 Sum_probs=62.1
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCCCCccccceeeeecCcccceeeeeccCCCCCCCCCCCCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 262 (325)
+.+|||++.|+|..++.-.++++++.+...+..+.|+........ ..++.-......+.. . ...........++
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~ 158 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWH---L-RFRSGRRALGVAF 158 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EET---T-TS-TT-B----S-
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhh---h-hhhhhhcccceee
Confidence 459999999999999999999999999888888888665332111 111111110000000 0 0000001011122
Q ss_pred ccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEec
Q 020499 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 263 ctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
++| -+=.|+|++++-+-. + +. ..-|=|+.+..-+.. ...+|.......|.|.
T Consensus 159 ~~G----~~~~~rr~~~~~~g~-f-d~--~~~~eD~~l~~r~~~-~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 159 LSG----SGMLFRRSALEEVGG-F-DP--FILGEDFDLCLRLRA-AGWRIVYAPDALVYHE 210 (228)
T ss_dssp B------TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHH-TT--EEEEEEEEEEE-
T ss_pred ccC----cEEEEEHHHHHHhCC-C-CC--CCcccHHHHHHHHHH-CCCcEEEECCcEEEEe
Confidence 222 123689999998743 3 22 444578888764433 4678999888888875
No 20
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=45.01 E-value=12 Score=32.22 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=25.1
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCcccc
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 218 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQ 218 (325)
+..|||++.|.|...+.-.+.++++.+.+.+..+..
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 446999999999887766667766665545544433
No 21
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=44.43 E-value=14 Score=32.19 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=30.3
Q ss_pred cccEEEEecccccCCCCChHHHHHHHHhhCCccccCc
Q 020499 184 EYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (325)
Q Consensus 184 ~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPA 220 (325)
.||||.+.|.|..++.-.+.++++.+++.+..+.|+.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP 120 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence 3999999999999988888888888876677776653
No 22
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=33.87 E-value=20 Score=28.01 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=19.1
Q ss_pred cchhccccEEEEecccccCCCCChHHHHHHHHhhC
Q 020499 179 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 213 (325)
Q Consensus 179 Pdiva~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~g 213 (325)
..+...|||||++|.+ .++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4778999999999964 455566666
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=33.86 E-value=25 Score=30.76 Aligned_cols=127 Identities=15% Similarity=0.079 Sum_probs=64.8
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCCCCcccccee-eeecCcccceeeeeccCCCCCCCCCCCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPIT-ARRRNSKAHRRMYKYKGSGRCDDYSTAP 261 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~~s~~~h~iT-~R~~~~~vHr~~~~~~~~~~C~~~~~~p 261 (325)
+.+|||++.|.|..++.-.++++..++...+..+.|+-+......-++ ++ .+.-....|-. .+..+. ..+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-----~~~ 156 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSL-LTRVQAMSLDYHFT---IEQVAR-----SST 156 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCch-hhHhhhhhHHhhhh---HhHhhH-----hhc
Confidence 579999999999999887788877776655555555543210000000 00 00000000000 000000 000
Q ss_pred CccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEec
Q 020499 262 PCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 262 pctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
.+...+=..+-+|+|++|+-+-.+- .+ ..+=|+.+...+. .+..++..++...|.|.
T Consensus 157 ~~~~~~~g~~~~~rr~~~~~vgg~~-~~---~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~ 213 (232)
T cd06437 157 GLFFNFNGTAGVWRKECIEDAGGWN-HD---TLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAE 213 (232)
T ss_pred CCeEEeccchhhhhHHHHHHhCCCC-CC---cchhhHHHHHHHH-HCCCeEEEeccceeeee
Confidence 0111111122379999998874332 22 2457887775553 24578988887777765
No 24
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=33.60 E-value=38 Score=25.68 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=23.9
Q ss_pred cccEEEEecccccCCCCChHHH-HHHHHhhCCccccC
Q 020499 184 EYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQP 219 (325)
Q Consensus 184 ~YdYIFlwDeDL~vd~f~~~ry-~~Ivr~~gLeISQP 219 (325)
.+||+++.|+|..++....+++ ....+..+..+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG 113 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec
Confidence 6999999999998877666665 23333334444443
No 25
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=32.18 E-value=64 Score=31.36 Aligned_cols=191 Identities=18% Similarity=0.210 Sum_probs=92.6
Q ss_pred CCCcEEEEEeccccccchhHHhhcC-----------CCCCcEEEEEEecCccCcccc--ccccCc------eeEEEe--e
Q 020499 107 PPMNLLAIAAGIKQKKIVDQIVRKF-----------PSKDFVVMLFHYDGVVDEWKD--LVWADR------AIHVSA--A 165 (325)
Q Consensus 107 ~~k~Lla~~VG~kqk~~Vd~~v~kf-----------~~~nF~vmLfhYDg~vd~w~d--~ews~~------aiHv~a--~ 165 (325)
.++--+++|+ ++..+++.++++.. +..++.|++ --||..|+=.+ -++.+. -+++.. .
T Consensus 69 ~~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIV-VDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 69 DVDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIII-VNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CeEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEE-EeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 4445667775 44445555555432 122566554 46888775322 112111 144432 2
Q ss_pred cccceeeeccccCcchhccccEEEEecccccCCCCChHHHHHHHHh---hCCccccCccCC-CCC-ccccceeeeec-Cc
Q 020499 166 NQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKD---EGLEISQPALDP-VKS-EVHHPITARRR-NS 239 (325)
Q Consensus 166 kqtKWwfakrfLhPdiva~YdYIFlwDeDL~vd~f~~~ry~~Ivr~---~gLeISQPALd~-~~s-~~~h~iT~R~~-~~ 239 (325)
|+.|-.=.+.=+ -.+..|||++.|.|...+.-+++++++.+++ .+.++....-.. ..+ ....+--.|+- ..
T Consensus 147 N~G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~ 223 (333)
T PTZ00260 147 NKGKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMY 223 (333)
T ss_pred CCChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHH
Confidence 334321111000 0256899999999999999999999998874 455443332111 001 00010001110 11
Q ss_pred ccceeeeeccCCCCCCCCCCCCCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEee
Q 020499 240 KAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISH 317 (325)
Q Consensus 240 ~vHr~~~~~~~~~~C~~~~~~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa 317 (325)
.+|.-. + -.|...-+ -+.+||- +|+|++++-+...+ ...+|+.|..+-..+.. .+.+|+-|--
T Consensus 224 ~~~~l~-~----~~~~~~i~-D~~~Gfk-----~~~r~~~~~i~~~~---~~~~~~fd~Ell~~a~~-~g~~I~EvPv 286 (333)
T PTZ00260 224 GFHFIV-N----TICGTNLK-DTQCGFK-----LFTRETARIIFPSL---HLERWAFDIEIVMIAQK-LNLPIAEVPV 286 (333)
T ss_pred HHHHHH-H----HHcCCCcc-cCCCCeE-----EEeHHHHHHHhhhc---cccCccchHHHHHHHHH-cCCCEEEEce
Confidence 111100 0 00111000 1122333 78999999764322 23689989888887753 3445554433
No 26
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=31.93 E-value=68 Score=28.48 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=37.7
Q ss_pred CCCCCCceecCCCcceecCCCCCCCCCCC-CCCCcEEEEEecccccc---chh----------HHhhcCCC------CCc
Q 020499 77 EALPEGIVSKTSNLEMRPLWSSPSKLNNQ-RPPMNLLAIAAGIKQKK---IVD----------QIVRKFPS------KDF 136 (325)
Q Consensus 77 e~Lp~giv~~~sd~~~r~Lwg~p~~~~~~-~~~k~Lla~~VG~kqk~---~Vd----------~~v~kf~~------~nF 136 (325)
++||+.-|.+-+|-...+|- +..+ ..+=.|++++--+.+.. .++ ..+++|.. .-|
T Consensus 34 ~Rlp~~~v~r~aD~~p~~l~-----~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~ 108 (169)
T PF07976_consen 34 RRLPSAKVVRHADGNPVHLQ-----DDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVF 108 (169)
T ss_dssp CB----EEEETTTTEEEEGG-----GG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSE
T ss_pred cccCCceEEEEcCCCChhHh-----hhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCee
Confidence 47999999999996666662 2222 23336666664443322 222 34456643 339
Q ss_pred EEEEEEecCccCccccccccC
Q 020499 137 VVMLFHYDGVVDEWKDLVWAD 157 (325)
Q Consensus 137 ~vmLfhYDg~vd~w~d~ews~ 157 (325)
|++|+| -..++++||.+
T Consensus 109 ~~~~I~----~~~~~~~e~~d 125 (169)
T PF07976_consen 109 DVLLIH----SSPRDEVELFD 125 (169)
T ss_dssp EEEEEE----SS-CCCS-GGG
T ss_pred EEEEEe----cCCCCceeHHH
Confidence 999999 34567788754
No 27
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=31.63 E-value=32 Score=26.80 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=25.5
Q ss_pred cccEEEEecccccCCCCChHHH-HHHHHhhCCccccCcc
Q 020499 184 EYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQPAL 221 (325)
Q Consensus 184 ~YdYIFlwDeDL~vd~f~~~ry-~~Ivr~~gLeISQPAL 221 (325)
.+|||.+.|+|..++.-.++++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 7999999999998877666666 3333444444444443
No 28
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=30.28 E-value=44 Score=31.80 Aligned_cols=26 Identities=27% Similarity=0.315 Sum_probs=18.2
Q ss_pred cchhhhhHHHHHHHHHhhhceeeeec
Q 020499 18 SCLCSLFIAAALICSVYFIGSSFVAK 43 (325)
Q Consensus 18 ~~~~~~~~~~~~~~~~~f~~~~~~~~ 43 (325)
+++..+|+.++|.+++|||++++.-.
T Consensus 201 g~f~wl~i~~~l~~~~Y~i~g~~~n~ 226 (268)
T PF09451_consen 201 GFFTWLFIILFLFLAAYLIFGSWYNY 226 (268)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhheee
Confidence 34456777777777899998876543
No 29
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=29.56 E-value=37 Score=29.99 Aligned_cols=117 Identities=17% Similarity=0.062 Sum_probs=65.0
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHh--hCCccccCccCCCCCccccceeeeecCcccceeeeeccCCCCCCCCCCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKD--EGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTA 260 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~--~gLeISQPALd~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~ 260 (325)
++||||++-|+|+.++.-.+.+...-+.+ .|+-=+.|-.-+.++... .+..-...+|-.++.. .
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~---~l~~~~~~~~~~~~~a-----~------ 95 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWS---RLEAAFFNFLPGVLQA-----L------ 95 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHH---HHHHHHHhHHHHHHHH-----h------
Confidence 88999999999999987666666655544 333222222222211111 1100000122111100 0
Q ss_pred CCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEee
Q 020499 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISH 317 (325)
Q Consensus 261 ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa 317 (325)
.=+.|+=.|+=.|.|++++.. .-+ +.+.+.-.=||.++..+.. +..+|.....
T Consensus 96 -~~~~~~~G~~m~~rr~~L~~~-GG~-~~l~~~ladD~~l~~~~~~-~G~~v~~~~~ 148 (175)
T PF13506_consen 96 -GGAPFAWGGSMAFRREALEEI-GGF-EALADYLADDYALGRRLRA-RGYRVVLSPY 148 (175)
T ss_pred -cCCCceecceeeeEHHHHHHc-ccH-HHHhhhhhHHHHHHHHHHH-CCCeEEEcch
Confidence 014567778888999999865 222 2334455669999987763 4677776653
No 30
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=28.90 E-value=46 Score=27.96 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=28.8
Q ss_pred ccccEEEEecccccCCCCChHHHHHHH-HhhCCccccC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 219 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Iv-r~~gLeISQP 219 (325)
+.+|||++.|+|-.++.-.+++.++.+ +..+..+.++
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999988877788888877 5555555544
No 31
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.64 E-value=52 Score=27.62 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=30.5
Q ss_pred cccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEe
Q 020499 273 VFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCI 322 (325)
Q Consensus 273 VFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H 322 (325)
+|+|++++-+-... .+. .|+=|+.+...+.. ..++..++...+.|
T Consensus 158 ~~r~~~~~~~~~~~-~~~--~~~~D~~~~~~~~~--~~~~~~~~~~~~~~ 202 (214)
T cd04196 158 AFNRELLELALPFP-DAD--VIMHDWWLALLASA--FGKVVFLDEPLILY 202 (214)
T ss_pred eEEHHHHHhhcccc-ccc--cccchHHHHHHHHH--cCceEEcchhHHHH
Confidence 69999999874433 221 67778777766643 45788888765554
No 32
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.04 E-value=49 Score=28.21 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=31.0
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD 222 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd 222 (325)
+..|||.+.|+|..++.-.+++.+..+...+..++.+...
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 110 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLR 110 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEee
Confidence 4589999999999998888888777777676666665543
No 33
>PRK10927 essential cell division protein FtsN; Provisional
Probab=25.27 E-value=55 Score=32.90 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHhhhceeeeechhhh
Q 020499 22 SLFIAAALICSVYFIGSSFVAKENKE 47 (325)
Q Consensus 22 ~~~~~~~~~~~~~f~~~~~~~~~~~~ 47 (325)
..+.++++.+++.|||+.|..++.|.
T Consensus 34 ~~m~alAvavlv~fiGGLyFith~k~ 59 (319)
T PRK10927 34 PAMVAIAAAVLVTFIGGLYFITHHKK 59 (319)
T ss_pred hHHHHHHHHHHHHHhhheEEEecCCC
Confidence 44566666778889999988777753
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=24.75 E-value=45 Score=29.30 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=31.4
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD 222 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd 222 (325)
+..|||++.|+|...+.-.+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 3469999999999999777888888887666666666543
No 35
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=24.49 E-value=59 Score=27.61 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=27.4
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQP 219 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQP 219 (325)
+.+|||++.|+|..++.--++++++.+.+.+-...+.
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~ 117 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAG 117 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEee
Confidence 5689999999999888777788877665555443333
No 36
>TIGR02165 cas_GSU0054 CRISPR-associated protein, GSU0054 family. This model represents a rare CRISPR-associated protein. So far, members are found in Geobacter sulfurreducens and in two unpublished genomes: Gemmata obscuriglobus and Actinomyces naeslundii.CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.
Probab=24.26 E-value=15 Score=37.58 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=25.2
Q ss_pred CCCCCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhh
Q 020499 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYC 303 (325)
Q Consensus 258 ~~~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c 303 (325)
++.|.++.++|+ +-.|-||=++-|||+|+..|.-
T Consensus 75 ~~~pe~a~~~e~------------iv~~A~~i~hLGWGiDmv~G~a 108 (465)
T TIGR02165 75 PTAPEFADHKEA------------IVEAAQNINHLGWGIDMVAGDA 108 (465)
T ss_pred CCCchHHHHHHH------------HHHHHhhccccccchhhcccch
Confidence 455556666664 4478899999999999998753
No 37
>PLN02867 Probable galacturonosyltransferase
Probab=24.00 E-value=33 Score=36.57 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=30.7
Q ss_pred ccccCcchhccccEEEEecccccCCCCChHHHHHH
Q 020499 174 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSI 208 (325)
Q Consensus 174 krfLhPdiva~YdYIFlwDeDL~vd~f~~~ry~~I 208 (325)
.||+=||++.++|-|...|+|+-|.. |+..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 57788999999999999999999987 99888876
No 38
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=23.21 E-value=1.3e+02 Score=31.44 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=53.3
Q ss_pred CCcEEEEEeccccc---cchhHHhhcCCCCCcEEEEEEecCccCccccccccCceeEEEeecccceeeeccccCcch-hc
Q 020499 108 PMNLLAIAAGIKQK---KIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDI-VA 183 (325)
Q Consensus 108 ~k~Lla~~VG~kqk---~~Vd~~v~kf~~~nF~vmLfhYDg~vd~w~d~ews~~aiHv~a~kqtKWwfakrfLhPdi-va 183 (325)
+++=+-+.|-.+.- +.|..+++|++ |-|-=||.=.-.|. - +.-|| .++|-+ .+
T Consensus 113 ~~~ElLfcv~s~eDpAi~vv~~Ll~kyp--~VdAklf~gG~~vg------~-npKIn--------------N~mpgy~~a 169 (431)
T KOG2547|consen 113 HKYELLFCVESSEDPAIEVVERLLKKYP--NVDAKLFFGGEKVG------L-NPKIN--------------NMMPGYRAA 169 (431)
T ss_pred CceEEEEEEccCCCcHHHHHHHHHhhCC--CcceEEEEcccccc------c-Chhhh--------------ccCHHHHHh
Confidence 36666666665543 34778888986 77766665322221 1 12333 566775 78
Q ss_pred cccEEEEecccccCCCCChHHHHHHHH
Q 020499 184 EYNYIFLWDEDIGVENFNPRRYLSIVK 210 (325)
Q Consensus 184 ~YdYIFlwDeDL~vd~f~~~ry~~Ivr 210 (325)
.||||++-|+|+-+-.-++-.+-.-|.
T Consensus 170 ~ydlvlisDsgI~m~pdtildm~t~M~ 196 (431)
T KOG2547|consen 170 KYDLVLISDSGIFMKPDTILDMATTMM 196 (431)
T ss_pred cCCEEEEecCCeeecCchHHHHHHhhh
Confidence 999999999999998888777766665
No 39
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=23.20 E-value=47 Score=33.33 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=34.3
Q ss_pred CCCCCCCCCccceEeeeeccccHHHHHHHhhhhcCCCccee
Q 020499 254 CDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAW 294 (325)
Q Consensus 254 C~~~~~~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGW 294 (325)
|.-...+.-.|+|||-+-|||++.+.+-+-...+..++-||
T Consensus 80 ~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGW 120 (316)
T KOG1555|consen 80 FAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGW 120 (316)
T ss_pred eccccccceecccchhccHHHHHHHHHHHHhcCCcceEEee
Confidence 33334445578899999999999999999999999999999
No 40
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=22.64 E-value=63 Score=28.76 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=9.5
Q ss_pred cEEEEEEecCc
Q 020499 136 FVVMLFHYDGV 146 (325)
Q Consensus 136 F~vmLfhYDg~ 146 (325)
-+-+||||-|-
T Consensus 90 ~~RvLFHYnGh 100 (154)
T PF14538_consen 90 DERVLFHYNGH 100 (154)
T ss_pred CceEEEEECCC
Confidence 48999999985
No 41
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=22.00 E-value=83 Score=30.82 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=29.2
Q ss_pred ccEEEEecccccCCCCChHHHHHHHHhhCCccc
Q 020499 185 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 217 (325)
Q Consensus 185 YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeIS 217 (325)
+|||++.|.|..++.-.+++.++-+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999998889999999888776654
No 42
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=20.76 E-value=90 Score=27.69 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=28.5
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhh--CCccccCc
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPA 220 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~--gLeISQPA 220 (325)
+.+|||++.|.|..++.-.+++.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 678999999999999888888888766543 34444543
No 43
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=20.21 E-value=82 Score=29.24 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=26.1
Q ss_pred cEEEEecccccCCCCChHHHHHHHHhhCCccc
Q 020499 186 NYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 217 (325)
Q Consensus 186 dYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeIS 217 (325)
+|+||.-=-..++.-+.+||++++|+.|.+++
T Consensus 133 ~ylWlLsRtP~~s~~~~~~ml~~ak~~Gfdv~ 164 (174)
T COG3040 133 EYLWLLSRTPTLSQETLKRMLEIAKRRGFDVS 164 (174)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 56777666666777788999999999999874
No 44
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.11 E-value=1.3e+02 Score=33.14 Aligned_cols=96 Identities=21% Similarity=0.308 Sum_probs=67.8
Q ss_pred eccccccchhHHhhcCCCCCcEEEEEEecCc-------------------c-------CccccccccCceeEEEeecccc
Q 020499 116 AGIKQKKIVDQIVRKFPSKDFVVMLFHYDGV-------------------V-------DEWKDLVWADRAIHVSAANQTK 169 (325)
Q Consensus 116 VG~kqk~~Vd~~v~kf~~~nF~vmLfhYDg~-------------------v-------d~w~d~ews~~aiHv~a~kqtK 169 (325)
+|..-|+.-.++=-..+.++|+|+++-|.-. | +--+|+-|-+-.+-|.+..-.|
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPdigvPv~viR~~~ 710 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPDIGVPVEVIRVAE 710 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcCCCCceEEEEccc
Confidence 4566677777777778899999999988532 2 2234788877666666665555
Q ss_pred eeeeccccCcchhccccEEEEecccccCCCCChHHHHHHHHhh
Q 020499 170 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDE 212 (325)
Q Consensus 170 WwfakrfLhPdiva~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~ 212 (325)
==.-.|||--|.++ =|.|.-.|||..+-|-.|-==|..-|++
T Consensus 711 NsLNNRFlPwd~IE-TEAvLS~DDDahLrhdEI~fgFRVWRE~ 752 (907)
T KOG2264|consen 711 NSLNNRFLPWDRIE-TEAVLSLDDDAHLRHDEIIFGFRVWREN 752 (907)
T ss_pred ccccccccCchhhh-heeeeecccchhhhhhheeeeeehhhhc
Confidence 55678999888876 7999999999999776654334444433
Done!