Query 020499
Match_columns 325
No_of_seqs 125 out of 146
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 03:53:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qg8_A Protein (spore coat pol 83.9 3 0.0001 35.1 7.3 118 183-323 87-214 (255)
2 1xhb_A Polypeptide N-acetylgal 59.4 11 0.00039 35.5 5.3 40 182-221 112-151 (472)
3 2ffu_A Ppgalnact-2, polypeptid 59.2 8.5 0.00029 36.9 4.4 40 182-221 144-183 (501)
4 3bcv_A Putative glycosyltransf 52.4 9.6 0.00033 31.6 3.2 38 183-220 83-120 (240)
5 4fix_A UDP-galactofuranosyl tr 45.3 22 0.00076 36.3 5.1 37 184-220 268-305 (657)
6 2d7i_A Polypeptide N-acetylgal 31.5 61 0.0021 31.9 5.6 210 107-323 111-338 (570)
7 2c0n_A A197; thermophil protei 25.4 23 0.00078 32.2 1.2 31 183-217 52-85 (203)
8 3sd4_A PHD finger protein 20; 25.2 39 0.0013 24.8 2.3 15 138-152 42-56 (69)
9 2eqm_A PHD finger protein 20-l 19.8 55 0.0019 25.5 2.3 24 138-161 49-73 (88)
10 4dix_A Plectin-related protein 18.4 1E+02 0.0034 28.5 3.9 39 122-168 105-143 (230)
No 1
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=83.94 E-value=3 Score=35.12 Aligned_cols=118 Identities=8% Similarity=-0.030 Sum_probs=66.2
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhh-CCccccCcc-----CCCCCccccceeeeecCcccceeeeeccCCCCCCC
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPAL-----DPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDD 256 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~-gLeISQPAL-----d~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~C~~ 256 (325)
+..|||++.|+|..++.-.++++++.++++ +..+..+.. +.+ +...+.. . .+...+. .
T Consensus 87 a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~----------~--- 150 (255)
T 1qg8_A 87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNEN-RDIVKET-V-RPAAQVT----------W--- 150 (255)
T ss_dssp CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC----CEEEEE-E-ECCCSCB----------S---
T ss_pred cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCC-Ccchhhc-c-CchHHHH----------H---
Confidence 678999999999999888888999888876 666655543 221 1111110 0 0000000 0
Q ss_pred CCCCCCccceEeeeeccccHHHHHHHhhhh----cCCCcceehhhhhhhhhhccCCCCCeEEEeeeeEEec
Q 020499 257 YSTAPPCIGWVEMMAPVFSRAAWRCAWYMI----QNDLIHAWGLDIQLGYCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 257 ~~~~ppctgfVEiMAPVFSr~Awrcvw~mi----QNDLvhGWGLD~~~~~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
....++-..+=+|+|++++.+=..+ ..+.....+-|+.+...+.. ..++..++...+.|+
T Consensus 151 -----~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~--~g~~~~~~~~~~~~r 214 (255)
T 1qg8_A 151 -----NAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNH--FYPFYPLDEELDLNY 214 (255)
T ss_dssp -----CCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTT--TCCBEEEEEEEEEEE
T ss_pred -----hhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHH--hCCEEEecCcEEEEE
Confidence 0011222234478999999874222 11222344567776654432 246999998877764
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=59.36 E-value=11 Score=35.45 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=33.3
Q ss_pred hccccEEEEecccccCCCCChHHHHHHHHhhCCccccCcc
Q 020499 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPAL 221 (325)
Q Consensus 182 va~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPAL 221 (325)
.+..|||++.|+|..++.--++++++.+++..-.+.-|.+
T Consensus 112 ~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~ 151 (472)
T 1xhb_A 112 VSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPII 151 (472)
T ss_dssp HCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred hccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeee
Confidence 3668999999999999999999999999887655555554
No 3
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=59.17 E-value=8.5 Score=36.88 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=35.1
Q ss_pred hccccEEEEecccccCCCCChHHHHHHHHhhCCccccCcc
Q 020499 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPAL 221 (325)
Q Consensus 182 va~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPAL 221 (325)
.+..|||++.|+|..++.--++++++.+++..-.+..|.+
T Consensus 144 ~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~ 183 (501)
T 2ffu_A 144 AAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPII 183 (501)
T ss_dssp HCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred hcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeee
Confidence 3678999999999999999999999999988777777764
No 4
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=52.41 E-value=9.6 Score=31.57 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=31.8
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhhCCccccCc
Q 020499 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPA 220 (325)
+..|||++.|+|..++.--++++++.+++.+.++...+
T Consensus 83 a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (240)
T 3bcv_A 83 ATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG 120 (240)
T ss_dssp CCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred cCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 56899999999999988889999999998777766544
No 5
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=45.30 E-value=22 Score=36.31 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=30.1
Q ss_pred cccEEEEecccccCCCCChHHHHHHHHhh-CCccccCc
Q 020499 184 EYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPA 220 (325)
Q Consensus 184 ~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~-gLeISQPA 220 (325)
.+|||++.|+|..++.-.++++++.+++. ..-+.+|.
T Consensus 268 ~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~ 305 (657)
T 4fix_A 268 DCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQ 305 (657)
T ss_dssp CCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEE
T ss_pred CCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeE
Confidence 68999999999999998999999998875 33445544
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=31.51 E-value=61 Score=31.93 Aligned_cols=210 Identities=11% Similarity=0.019 Sum_probs=96.8
Q ss_pred CCCcEEEEEecccc----ccchhHHhhcCCCCC--cEEEEEEecCccCcc-cc-cc-cc--CceeEEEeecccceeeecc
Q 020499 107 PPMNLLAIAAGIKQ----KKIVDQIVRKFPSKD--FVVMLFHYDGVVDEW-KD-LV-WA--DRAIHVSAANQTKWWFAKR 175 (325)
Q Consensus 107 ~~k~Lla~~VG~kq----k~~Vd~~v~kf~~~n--F~vmLfhYDg~vd~w-~d-~e-ws--~~aiHv~a~kqtKWwfakr 175 (325)
.++.-|++|+=... ...++++++.- ..+ |.|++. =||..|+= .+ ++ +. ..-|++.....- -=++.-
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt-~~~~~~EIIVV-DDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n-~G~~~A 187 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRS-PPELVAEIVLV-DDFSDREHLKKPLEDYMALFPSVRILRTKKR-EGLIRT 187 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHS-CGGGEEEEEEE-ECSCCCGGGTHHHHHHHTTSTTEEEEECSSC-CCHHHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcC-CccCcEEEEEE-ECCCCcHHHHHHHHHHHHhCCeEEEEECCCC-CCHHHH
Confidence 45667777775543 23345555542 233 366555 47777654 22 11 11 112333221111 001100
Q ss_pred ccCcchhccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCC-CCcccccee----eeec-Ccccceeeeecc
Q 020499 176 FLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPV-KSEVHHPIT----ARRR-NSKAHRRMYKYK 249 (325)
Q Consensus 176 fLhPdiva~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~-~s~~~h~iT----~R~~-~~~vHr~~~~~~ 249 (325)
...-=-.+.-|||++.|+|..++.--++++++.+++..--+..|.++.. ...+.+... .+.. ...++.......
T Consensus 188 ~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (570)
T 2d7i_A 188 RMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIP 267 (570)
T ss_dssp HHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCC
T ss_pred HHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccc
Confidence 0000013568999999999999999999999998876544444443210 001111100 0000 000000000000
Q ss_pred CCCCCCCCCCCCCccceEeeeeccccHHHHHHHhhhhcCCCccee-hhhhhhhhhhccCCCCCeEEEeeeeEEec
Q 020499 250 GSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAW-GLDIQLGYCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 250 ~~~~C~~~~~~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGW-GLD~~~~~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
....-. ..+.|--+.++-.-+=+|+|++|+.+= .+ ++....| |=|+.+..-+.. ...+|.++....|.|.
T Consensus 268 ~~~~~~-~~~~~~~~~~~~g~~~~irr~~~~~iG-gf-De~~~~~g~ED~dl~~Rl~~-~G~~i~~~p~~~v~H~ 338 (570)
T 2d7i_A 268 PELQKA-DPSDPFESPVMAGGLFAVDRKWFWELG-GY-DPGLEIWGGEQYEISFKVWM-CGGRMEDIPCSRVGHI 338 (570)
T ss_dssp TTTCCS-STTSCEECSSCCSSSEEEEHHHHHHTT-SS-CTTCCSSSSHHHHHHHHHHH-TTCEEEEEEEEEEEEC
T ss_pred hhhhcc-CCCcceecccccceEEEEEHHHHHhcC-CC-CCcccccCcchHHHHHHHHh-CCCeEEEccCeEEEEE
Confidence 000000 001111111222223468999999873 34 3344566 445555533321 3568999999889884
No 7
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=25.41 E-value=23 Score=32.17 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=23.7
Q ss_pred ccccEEEEeccc---ccCCCCChHHHHHHHHhhCCccc
Q 020499 183 AEYNYIFLWDED---IGVENFNPRRYLSIVKDEGLEIS 217 (325)
Q Consensus 183 a~YdYIFlwDeD---L~vd~f~~~ry~~Ivr~~gLeIS 217 (325)
..|||+++.|-| ++.+.-++-|++ +.|-+|.
T Consensus 52 ~~~dhllfIDAD~~~I~FdPe~V~rLl----~~g~DVV 85 (203)
T 2c0n_A 52 KDYDTLAFLDEDVVPIEIDFQKVEAKF----NEGYDVV 85 (203)
T ss_dssp TTCCEEEEECTTEEEEECCHHHHHHHH----HHTCSEE
T ss_pred CCCCEEEEEeCCCCccccCHHHHHHHH----hCCCCEE
Confidence 469999999999 887777777776 5566653
No 8
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=25.18 E-value=39 Score=24.77 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=11.1
Q ss_pred EEEEEecCccCcccc
Q 020499 138 VMLFHYDGVVDEWKD 152 (325)
Q Consensus 138 vmLfhYDg~vd~w~d 152 (325)
.+|.||||--+.|++
T Consensus 42 ~~~VhfdGw~~~~D~ 56 (69)
T 3sd4_A 42 KVLIHFKRWNHRYDE 56 (69)
T ss_dssp EEEEEETTSCGGGCE
T ss_pred EEEEEeCCCCCCCCE
Confidence 469999997666654
No 9
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=19.82 E-value=55 Score=25.46 Aligned_cols=24 Identities=17% Similarity=0.601 Sum_probs=17.6
Q ss_pred EEEEEecCccCcccc-ccccCceeE
Q 020499 138 VMLFHYDGVVDEWKD-LVWADRAIH 161 (325)
Q Consensus 138 vmLfhYDg~vd~w~d-~ews~~aiH 161 (325)
-+|.||||=-+.|++ ..++..-||
T Consensus 49 ~v~VHfdGW~~~yDeWv~~dS~~I~ 73 (88)
T 2eqm_A 49 KMLVHFERWSHRYDEWIYWDSNRLR 73 (88)
T ss_dssp EEEEEESSSTTTEEEEEETTSCCEE
T ss_pred EEEEEECCCCCcccEEeeCCCCcEe
Confidence 489999998877776 555555566
No 10
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=18.36 E-value=1e+02 Score=28.46 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=32.3
Q ss_pred cchhHHhhcCCCCCcEEEEEEecCccCccccccccCceeEEEeeccc
Q 020499 122 KIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQT 168 (325)
Q Consensus 122 ~~Vd~~v~kf~~~nF~vmLfhYDg~vd~w~d~ews~~aiHv~a~kqt 168 (325)
..|+++++|- ...|.|++.-+.|. +|.+.++|+-.+.-.
T Consensus 105 ~yVEaL~rk~-~tEFNVvv~q~nG~-------d~~s~sihvl~vgk~ 143 (230)
T 4dix_A 105 SYVEALVRKH-DVDFNVVVTQMSGE-------DHTSESIHLFHVGKM 143 (230)
T ss_dssp HHHHHHHTTS-EEEEEEEEEEETTE-------ECCCCCEEEEEEESS
T ss_pred HHHHHHhhcC-CCcEEEEEEEEcCc-------cCccceEEEEEeccE
Confidence 3699999996 78999999999997 677789998777544
Done!