BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020500
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DKA|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKA|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKC|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKC|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKD|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
pdb|2DKD|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
Length = 544
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 149/286 (52%), Gaps = 24/286 (8%)
Query: 14 SHFPPPPGVKLSYGTAGFRADASILQSTVYRVGILAALRSLKTQ-CVIGLMITASHNKVT 72
SH P P GV +YGTAGFR A L + VGI+A+LRS Q +G+MITASHN
Sbjct: 13 SH-PKPQGVTFTYGTAGFRMKADKLDYVTFTVGIIASLRSKYLQGKTVGVMITASHNPPE 71
Query: 73 DNGVKIADPSGGMLSQDWEPFSDQLANA-PDP--------QSLVSLIEEFVKKEKIPFNG 123
DNGVK+ DP G ML WE ++ LANA P P SLV +I+ V KI +
Sbjct: 72 DNGVKVVDPLGSMLESSWEKYATDLANASPSPSNDSEGEKNSLVEVIKNLVSDLKIDLS- 130
Query: 124 KHPAEILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHWMVRARNKGL--K 181
PA +++ RD+R S +L A G +V D G+ TTP+LH++ R N K
Sbjct: 131 -IPANVVIARDSRESSPALSMATIDGFQSVPNTKYQDFGLFTTPELHYVTRTLNDPDFGK 189
Query: 182 ATESDYFEQLLSSFRCLMNLIPDRGTSNETEDKLIVDGANGVGGEKLEVIKEKL--NELD 239
TE Y+ +L SF+ + + SN + + +D ANGVG K++ + EK E+
Sbjct: 190 PTEDGYYSKLAKSFQEIYTIC----ESNNEKIDITIDAANGVGAPKIQELLEKYLHKEIS 245
Query: 240 IEVRNSG-KEGGVLNEGVGADFVQKEKVVPHGFG--SNHAGISFSG 282
V N K+ +LN GAD+V+ + +P +N SF G
Sbjct: 246 FTVVNGDYKQPNLLNFDCGADYVKTNQKLPKNVKPVNNKLYASFDG 291
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 123 GKHPAEILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHWMVRARN 177
G+ +++GRDTR SGE L EA G+ + VG D+GI TP + W + N
Sbjct: 38 GRKKPLVVVGRDTRVSGEMLKEALISGLLS-VGCDVIDVGIAPTPAVQWATKHFN 91
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 61 GLMITASHNKVTDNGVKIADPSGGMLSQDWEPFSDQL 97
G +ITASHN NG+K+ +P+G L ++ E ++L
Sbjct: 95 GAVITASHNPPEYNGIKLLEPNGMGLKKEREAIVEEL 131
>pdb|3I3W|A Chain A, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
pdb|3I3W|B Chain B, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
Length = 443
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 48 LAALRSLKTQCVIGLMITASHNKVTDNGVKIADPSGGMLSQDWE 91
+ A ++K + G +ITA HNK TDNG+K+ +G L E
Sbjct: 82 VVAFXTVKHRAAAGFVITAXHNKFTDNGIKLFSSNGFKLDDALE 125
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 121 FNGKHPAEILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHWMVRA 175
F GK+ ++IL+GRD R G+ L++ + G+ + VG +D G+ TP L + V+
Sbjct: 33 FFGKN-SKILVGRDVRAGGDMLVKIVEGGLLS-VGVEVYDGGMAPTPALQYAVKT 85
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 61 GLMITASHNKVTDNGVKIADPSG 83
G++ITASHN NG+K+ D G
Sbjct: 91 GVVITASHNPAPYNGIKVVDKDG 113
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 42 VYRVGILAA------LRSLKTQCVIGLMITASHNKVTDNGVKIADPSGGMLSQDWE 91
V R+G+++ ++L Q G+MI+ASHN V DNG+K G L+ + E
Sbjct: 92 VMRLGVISTPGVAYLTKALDAQA--GVMISASHNPVQDNGIKFFGSDGFKLTDEQE 145
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 128 EILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHWMVRA 175
++++GRDTR SG L A G+ + GA +G+++TP + ++ +A
Sbjct: 63 KVIIGRDTRISGHMLEGALVAGLLS-TGAEVMRLGVISTPGVAYLTKA 109
>pdb|1TUO|A Chain A, Crystal Structure Of Putative Phosphomannomutase From
Thermus Thermophilus Hb8
Length = 464
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 50 ALRSLKTQCVIGLMITASHNKVTDNGVKIADPSGGMLSQD 89
A+R LK G M+TASHN GVK D +GG ++Q+
Sbjct: 94 AVRHLKAAG--GAMLTASHNPPQYLGVKFKDATGGPIAQE 131
>pdb|2FUV|A Chain A, Phosphoglucomutase From Salmonella Typhimurium.
pdb|2FUV|B Chain B, Phosphoglucomutase From Salmonella Typhimurium
Length = 549
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 61 GLMITASHNKVTDNGVKIADPSGGMLSQDWEPFSDQLANA 100
G++IT SHN D G+K P+GG + + ANA
Sbjct: 143 GIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANA 182
>pdb|3FXG|A Chain A, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|B Chain B, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|C Chain C, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|D Chain D, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|E Chain E, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|F Chain F, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|G Chain G, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|H Chain H, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
Length = 455
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 86 LSQDWEPFSDQLANAPDPQSLVSLIEEFVKKEKIPFNG 123
+SQ PF + LAN+PD +S++ + + E IP G
Sbjct: 336 ISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPIPTKG 373
>pdb|2P0I|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
Length = 456
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 86 LSQDWEPFSDQLANAPDPQSLVSLIEEFVKKEKIPFNG 123
+SQ PF + LAN+PD +S++ + + E IP G
Sbjct: 336 ISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPIPTKG 373
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 61 GLMITASHNKVTDNGVKIADPSGGMLSQDWEPFSDQLANA 100
G++IT SHN D G+K P+GG + + ANA
Sbjct: 164 GIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANA 203
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 61 GLMITASHNKVTDNGVKIADPSGGMLSQDWEPFSDQLANA 100
G++IT SHN D G+K P+GG + + ANA
Sbjct: 164 GIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANA 203
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 92
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 92
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 92
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 50 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 91
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 92
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 50 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 91
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 92
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 61 GLMITASHNKVTDNGVKIADPSGG 84
G+++T SHN D G K P+GG
Sbjct: 124 GVLLTPSHNPPEDGGFKYNPPTGG 147
>pdb|3N6O|A Chain A, Crystal Structure Of The Gef And P4m Domain Of DrraSIDM
FROM Legionella Pneumophila
pdb|3N6O|B Chain B, Crystal Structure Of The Gef And P4m Domain Of DrraSIDM
FROM Legionella Pneumophila
Length = 311
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 93 FSDQLANAPDPQSLVSLIEEFVKKE--KIPFNGKHPAEILLGRDTR--PSGESLLEAAKQ 148
F D+LA A D QSL ++ E K+ +I G+ LLG T S E ++E ++
Sbjct: 239 FKDKLAEATDEQSLKQIVAELKSKDEYRILAKGQGLTTQLLGLKTSSVSSFEKMVEETRE 298
Query: 149 GISA 152
I +
Sbjct: 299 SIKS 302
>pdb|3BUT|A Chain A, Crystal Structure Of Protein Af_0446 From Archaeoglobus
Fulgidus
Length = 136
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 48 LAALRSLKTQCVIGLMITASHNKVTDNGVKIAD 80
+ AL ++ + V+ ++++ H + NGVK+AD
Sbjct: 20 IVALAKVRNEDVVPIVVSGYHYTIEXNGVKVAD 52
>pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
From P.aeruginosa
Length = 463
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G + TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGXVPTPVLYY 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,410,833
Number of Sequences: 62578
Number of extensions: 398824
Number of successful extensions: 1198
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 36
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)