Query 020502
Match_columns 325
No_of_seqs 127 out of 576
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 3.9E-92 1.3E-96 684.1 21.4 323 1-323 1-323 (390)
2 2vgn_A DOM34; translation term 100.0 2.9E-86 1E-90 642.8 37.0 320 1-323 1-329 (386)
3 3j15_A Protein pelota; ribosom 100.0 8.5E-87 2.9E-91 640.6 16.8 306 1-319 1-308 (357)
4 3oby_A Protein pelota homolog; 100.0 6.4E-84 2.2E-88 617.8 29.2 295 1-321 1-295 (352)
5 3obw_A Protein pelota homolog; 100.0 3.7E-83 1.3E-87 615.4 31.8 295 1-322 21-316 (364)
6 3agj_B Protein pelota homolog; 100.0 1.7E-79 5.7E-84 590.6 36.1 299 1-322 3-303 (358)
7 2qi2_A Pelota, cell division p 100.0 5.3E-78 1.8E-82 576.9 22.8 292 1-319 1-293 (347)
8 3e20_C Eukaryotic peptide chai 100.0 3.9E-51 1.3E-55 401.8 -5.6 277 15-318 39-332 (441)
9 1dt9_A ERF1, protein (eukaryot 100.0 5.2E-49 1.8E-53 388.0 -5.5 272 29-318 35-327 (437)
10 3agk_A Peptide chain release f 100.0 2.2E-41 7.7E-46 327.3 17.5 221 75-316 88-324 (373)
11 3ir9_A Peptide chain release f 99.8 1.1E-18 3.6E-23 150.2 8.4 74 245-320 2-75 (166)
12 1x52_A Pelota homolog, CGI-17; 99.7 6.6E-18 2.3E-22 138.4 2.7 68 256-323 3-70 (124)
13 1xbi_A 50S ribosomal protein L 75.5 5.3 0.00018 31.4 5.8 40 277-317 16-55 (120)
14 3j21_Z 50S ribosomal protein L 74.3 4.7 0.00016 30.4 5.0 35 281-316 6-40 (99)
15 3v7q_A Probable ribosomal prot 69.5 7.7 0.00026 29.4 5.2 30 288-317 16-45 (101)
16 4a18_G RPL30; ribosome, eukary 69.3 5.1 0.00018 30.6 4.2 36 281-317 13-48 (104)
17 1w41_A 50S ribosomal protein L 69.0 5.7 0.0002 30.0 4.4 35 281-316 7-41 (101)
18 3on1_A BH2414 protein; structu 68.9 8.1 0.00028 29.2 5.2 30 288-317 15-44 (101)
19 3v7e_A Ribosome-associated pro 68.2 6.7 0.00023 28.6 4.5 28 290-317 10-37 (82)
20 1vq8_F 50S ribosomal protein L 66.5 10 0.00035 29.6 5.5 36 281-317 20-55 (120)
21 3u5e_c L32, RP73, YL38, 60S ri 66.5 10 0.00034 29.0 5.4 30 288-317 19-48 (105)
22 3iz5_f 60S ribosomal protein L 64.7 12 0.0004 29.1 5.4 37 280-317 16-52 (112)
23 3gdz_A Arginyl-tRNA synthetase 64.4 4.8 0.00016 31.1 3.2 28 187-214 59-87 (109)
24 3cpq_A 50S ribosomal protein L 63.3 8.4 0.00029 29.6 4.4 28 290-317 20-47 (110)
25 2aif_A Ribosomal protein L7A; 63.2 13 0.00045 29.8 5.7 39 278-317 29-67 (135)
26 2fc3_A 50S ribosomal protein L 63.0 11 0.00037 29.7 5.1 28 290-317 27-54 (124)
27 1rlg_A 50S ribosomal protein L 62.5 11 0.00038 29.4 5.0 28 290-317 26-53 (119)
28 2ale_A SNU13, NHP2/L7AE family 60.9 14 0.00049 29.6 5.5 37 280-317 22-58 (134)
29 2lbw_A H/ACA ribonucleoprotein 60.9 16 0.00053 28.6 5.7 30 288-317 17-46 (121)
30 3o85_A Ribosomal protein L7AE; 60.2 17 0.00058 28.6 5.8 29 289-317 29-57 (122)
31 3vi6_A 60S ribosomal protein L 58.1 8.7 0.0003 30.5 3.7 28 290-317 26-53 (125)
32 2xzm_U Ribosomal protein L7AE 56.5 14 0.00049 29.2 4.7 39 278-317 12-50 (126)
33 2jnb_A NHP2-like protein 1; sp 45.5 22 0.00075 28.9 4.2 30 288-317 47-76 (144)
34 4dey_A Voltage-dependent L-typ 37.9 50 0.0017 30.6 5.9 78 200-288 140-229 (337)
35 3u5c_M 40S ribosomal protein S 34.3 42 0.0015 27.2 4.2 40 277-317 27-66 (143)
36 3r8e_A Hypothetical sugar kina 33.5 81 0.0028 28.2 6.6 70 181-253 240-310 (321)
37 4htl_A Beta-glucoside kinase; 31.2 65 0.0022 28.6 5.5 66 182-254 218-283 (297)
38 1oa8_A Ataxin-1; RNA binding, 30.7 1.1E+02 0.0039 24.3 6.1 82 13-127 24-107 (133)
39 3mcp_A Glucokinase; structural 28.7 84 0.0029 29.2 5.9 47 182-229 240-287 (366)
40 2gup_A ROK family protein; sug 27.3 72 0.0025 27.9 5.0 46 182-227 208-253 (292)
41 3vgl_A Glucokinase; ROK family 27.3 1.6E+02 0.0053 26.3 7.4 71 181-254 232-304 (321)
42 4db3_A Glcnac kinase, N-acetyl 25.5 1E+02 0.0035 27.7 5.8 69 182-254 250-318 (327)
43 2pk8_A Uncharacterized protein 22.3 1.9E+02 0.0067 21.6 5.6 39 181-225 14-53 (103)
44 3htv_A D-allose kinase, alloki 22.2 1.2E+02 0.0041 27.0 5.5 67 181-253 219-290 (310)
45 2zkr_f 60S ribosomal protein L 21.9 57 0.0019 29.2 3.1 31 287-317 131-161 (266)
46 2yhw_A Bifunctional UDP-N-acet 21.4 1.4E+02 0.0047 26.8 5.8 46 181-228 264-309 (343)
47 2e2o_A Hexokinase; acetate and 20.9 1.2E+02 0.004 26.7 5.1 46 182-227 220-265 (299)
48 3jyw_G 60S ribosomal protein L 20.8 69 0.0024 24.8 3.1 32 286-317 20-51 (113)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-92 Score=684.15 Aligned_cols=323 Identities=38% Similarity=0.693 Sum_probs=278.2
Q ss_pred CeeeeeecccCCCceEEEeccCchhHHHHHHhhCCCCeEEEEeEEEEEecccCCCccceEEEEEEEEEEEEEeecCCCCe
Q 020502 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (325)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~~ef~~~~~~ 80 (325)
|||+++++.++++|.|+|+||++||||||||||++||.|+|+|+|+|++++++|+++++|++++|+|+||+++|||++++
T Consensus 1 Mkl~~~~~~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~~ 80 (390)
T 3mca_B 1 MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAAQ 80 (390)
T ss_dssp -------CBCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EECCCEEECTTSSC
T ss_pred CccccccccCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEEEEEEEecCCCCE
Confidence 99999999999999999999999999999999999999999999999998888989999999999999999999999999
Q ss_pred EEEEEEEeecCcccccccEEEEEEccCcceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEE
Q 020502 81 LRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITR 160 (325)
Q Consensus 81 Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~ 160 (325)
|||+|+|+.+|+++++|+|||++|+||+||+++|++||+|++++|++|++++.++++++|+||+|.|+||+++++++.++
T Consensus 81 Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~ 160 (390)
T 3mca_B 81 LHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILR 160 (390)
T ss_dssp EEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEE
T ss_pred EEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEEEEecCCCCCCCccchhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCcE
Q 020502 161 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240 (325)
Q Consensus 161 ~~i~~~ip~K~~~~~s~~~~~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~ 240 (325)
+++++++||||++|.+++++++++||++|++++.+++++.++++||||||||+|++|++||.+++.+..++.|+.++++|
T Consensus 161 ~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~~k~ 240 (390)
T 3mca_B 161 QRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKF 240 (390)
T ss_dssp EEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHGGGE
T ss_pred EEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhcCeE
Confidence 99999999999886558999999999999999999999999999999999999999999999999988888888888999
Q ss_pred EEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCccc
Q 020502 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 320 (325)
Q Consensus 241 ~v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~r~ 320 (325)
+++|+|+||++|++|+|++|+++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|++||+
T Consensus 241 ~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~ 320 (390)
T 3mca_B 241 VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRS 320 (390)
T ss_dssp EEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCC
T ss_pred EEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 020502 321 VCS 323 (325)
Q Consensus 321 ~d~ 323 (325)
+|+
T Consensus 321 ~d~ 323 (390)
T 3mca_B 321 SDI 323 (390)
T ss_dssp SCH
T ss_pred CCh
Confidence 874
No 2
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=2.9e-86 Score=642.81 Aligned_cols=320 Identities=26% Similarity=0.459 Sum_probs=290.0
Q ss_pred Ceeeeee---cccCCCceEEEeccCchhHHHHHHhhCCCCeEEEEeEEEEEecccCCCccceEEEEEEEEEEEEEeecCC
Q 020502 1 MKILRRN---LVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKE 77 (325)
Q Consensus 1 Mki~~~~---~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~~ef~~~ 77 (325)
|||++++ +.+ ++|.|+|+||++||||||||||++||.|+|+|+|+|++ +++|+ +++|++++|+|+||+++|||+
T Consensus 1 Mki~~~~~~~~~~-~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~Rkv~~-~~~g~-~~~r~~~~L~i~Ve~~~f~~~ 77 (386)
T 2vgn_A 1 MKVISLKKDSFNK-GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKL-DEAGK-KKSTDLVKLKIKVISEDFDMK 77 (386)
T ss_dssp CEEEEEEECSSCT-TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEEEEEEEEETT
T ss_pred CeeeeeccccccC-CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEEEEec-cCCCC-ceEEEEEEEEEEEEEEEecCC
Confidence 9999999 777 89999999999999999999999999999999999988 66777 899999999999999999999
Q ss_pred CCeEEEEEEEeecCcc-----cccccEEEEEEccCcceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEE
Q 020502 78 GSVLRIRGKNILENEH-----VKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLV 152 (325)
Q Consensus 78 ~~~Lri~G~i~~~~e~-----v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll 152 (325)
+++|||+|+|+++|++ |++|+|||++|+||+||+++||+|++|++++|++|++++.++.+++|+||+|.|+||++
T Consensus 78 ~~~lri~G~i~~~~~~~~~~~vk~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l 157 (386)
T 2vgn_A 78 DEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLV 157 (386)
T ss_dssp TTEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTCTTTTTCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEEEccCCccccccccCccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhccccCCCEEEEEEECCcEEEEEE
Confidence 9999999999999998 99999999999999999999999999999999999998888899999999999999999
Q ss_pred ecceEEEEEEEEEecCCCCCCCcc-chhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccc
Q 020502 153 GRSMTITRSRIETSIPRKHGPAIA-GYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLR 231 (325)
Q Consensus 153 ~~~~~~~~~~i~~~ip~K~~~~~s-~~~~~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~ 231 (325)
+++++.+++++++++||||++||+ ++++++++||++|++++.+++++.++++||||||||+|++|++||.+++++..++
T Consensus 158 ~~~~~~~~~~i~~~iP~K~~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~~l~~~~~~~~~~ 237 (386)
T 2vgn_A 158 TSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNK 237 (386)
T ss_dssp CSSCEEEEEEEEC---------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHHHHHHHHHTTCH
T ss_pred ECCEEEEEEEEEecCCCCccCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhhccc
Confidence 999999999999999999987754 4889999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcEEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEE
Q 020502 232 PIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTL 311 (325)
Q Consensus 232 ~~~~~~~k~~v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetL 311 (325)
.|+.++++|+++|+|+++.+|++|+|++|+++++|+++++++|.++|++|++++++|++++|||+++|.+|+++|||+||
T Consensus 238 ~~~~~~~ki~vv~~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVetL 317 (386)
T 2vgn_A 238 KILDNKGMFFIAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYL 317 (386)
T ss_dssp HHHTTGGGEEEEECSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEE
T ss_pred hhhhccCcEEEEECCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccCCC
Q 020502 312 LITDDLFRLVCS 323 (325)
Q Consensus 312 LIsD~l~r~~d~ 323 (325)
||+|+++|++|+
T Consensus 318 LV~d~l~r~~d~ 329 (386)
T 2vgn_A 318 LLTDKVLHSDNI 329 (386)
T ss_dssp EEETTGGGSSCH
T ss_pred EEechhhcCCCc
Confidence 999999998774
No 3
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.5e-87 Score=640.58 Aligned_cols=306 Identities=27% Similarity=0.432 Sum_probs=293.3
Q ss_pred CeeeeeecccCCCceEEEeccCchhHHHHHHhhCCCCeEEEEeEEEEEecccC-CCccceEEEEEEEEEEEEEeecCCCC
Q 020502 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMAS-GSRDAERVKLKLEIKVEVVDYDKEGS 79 (325)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~-g~~~~~r~~~~L~i~Ve~~ef~~~~~ 79 (325)
|||++++ +++|.|+|+||++||||||||||++||.|+|+|+|+|++++++ ++++++|++++|+|+||+++|||+++
T Consensus 1 Mki~~~~---~~~g~v~l~pE~~dDlw~ly~li~~gD~v~a~T~Rkv~~~~~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~ 77 (357)
T 3j15_A 1 MEILEEK---PKEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSLRAEKVEVIPVFLGVQAEKINFHKFAN 77 (357)
T ss_dssp CCCEECS---TTSSSEECCCCSHHHHHHHHHHCCSSCEEECCCCCCCCCCCSSSCCCCCCCCCCCCEEECSCEEEETTTT
T ss_pred CceeEec---CCCceEEEEECChHHHHHHHHhCCCCCEEEEEEEEEEEcCCCCcCCCccEEEEEEEEEEEEEEEecCCCC
Confidence 9999999 5899999999999999999999999999999999999988766 47888999999999999999999999
Q ss_pred eEEEEEEEeecC-cccccccEEEEEEccCcceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEE
Q 020502 80 VLRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTI 158 (325)
Q Consensus 80 ~Lri~G~i~~~~-e~v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~ 158 (325)
+|||+|+|+++| +++++|+|||++|+||+||+++|+.|++|++++|++|++++.++.+++|+||+|+|+||++++++++
T Consensus 78 ~Lri~G~i~~~~~~~v~~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~~l~~~~~~ 157 (357)
T 3j15_A 78 QVRVTGPIVYASREDVPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVREYGVE 157 (357)
T ss_dssp EEEECCBEEECCCSSCCCSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEEEEEeccccccccccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHhccccCcEEEEEEECCcEEEEEEeCCEEE
Confidence 999999999999 8999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCccchhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccC
Q 020502 159 TRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 238 (325)
Q Consensus 159 ~~~~i~~~ip~K~~~~~s~~~~~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~ 238 (325)
+++++++++|||++ ++.+++++++||++|++++.+++++.++++||||||||+|++|++||++++++ .++
T Consensus 158 ~~~~i~~~ipkK~~--~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l~~~~~~--------l~~ 227 (357)
T 3j15_A 158 ILNSIRHNLGGKRY--NTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPE--------LAK 227 (357)
T ss_dssp EEECCCCCSCSSSS--SCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHHHHHSCC--------SSC
T ss_pred EEEEEEecCCCCcc--cchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHHHHhhHH--------hhC
Confidence 99999999999986 56688999999999999999999999999999999999999999999986532 346
Q ss_pred cEEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCc
Q 020502 239 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 318 (325)
Q Consensus 239 k~~v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~ 318 (325)
+|+++|+|+||.+|++|+|++|+++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++
T Consensus 228 kvv~v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~ 307 (357)
T 3j15_A 228 KVVIEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELL 307 (357)
T ss_dssp EECCCCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHH
T ss_pred eEEEEeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEecccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 020502 319 R 319 (325)
Q Consensus 319 r 319 (325)
|
T Consensus 308 r 308 (357)
T 3j15_A 308 K 308 (357)
T ss_dssp T
T ss_pred c
Confidence 8
No 4
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=6.4e-84 Score=617.77 Aligned_cols=295 Identities=24% Similarity=0.393 Sum_probs=257.6
Q ss_pred CeeeeeecccCCCceEEEeccCchhHHHHHHhhCCCCeEEEEeEEEEEecccCCCccceEEEEEEEEEEEEEeecCCCCe
Q 020502 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (325)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~~ef~~~~~~ 80 (325)
|||++++ .++++|.|+|+||++||||||||||++||.|+|+| |||+.++++++.+++|++++|+|+||+++|||++++
T Consensus 1 Mki~~~~-~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T-Rkv~~~~~~~~~~~er~~~~L~i~Ve~ief~~~~~~ 78 (352)
T 3oby_A 1 MQIVEEN-LRDNEGEIKLIPETLDDLWHLRFIIEKGDVVFATT-KRASQSSDKLRSDKEMVTVRLGIEVEKVEFHRFANR 78 (352)
T ss_dssp CEEEEEC-CBTTEEEEEEECCSHHHHHHHHHHSCTTCEEEECC-C---------------CCCCEEEEEEEEEECSSSSC
T ss_pred Cceeeec-cCCCceeEEEEeCChHHHHHHHHhccCCCEEEEEE-EEEeccCCCCCcceEEEEEEEEEEEEEEEecCCCCE
Confidence 9999999 78899999999999999999999999999999999 999988777744459999999999999999999999
Q ss_pred EEEEEEEeecCcccccccEEEEEEccCcceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEE
Q 020502 81 LRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITR 160 (325)
Q Consensus 81 Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~ 160 (325)
|||+|+|+++|++ |+|||++|+||+||+++| +|++|++++|++|++++.++.+|+|+||+|+|+||+|++++++++
T Consensus 79 Lri~G~i~~~~~~---G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~ 154 (352)
T 3oby_A 79 LRVSGKIVAGIEE---SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEI 154 (352)
T ss_dssp EEEEEEEEEC-------CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEE
T ss_pred EEEEEEEEecCCC---CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEE
Confidence 9999999999987 999999999999999999 899999999999999888889999999999999999999999999
Q ss_pred EEEEEecCCCCCCCccchhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCcE
Q 020502 161 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240 (325)
Q Consensus 161 ~~i~~~ip~K~~~~~s~~~~~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~ 240 (325)
+++++++|||++ ++ .++||++|++++.++ ++++||||||||+|++|++||.+++++ ++++|
T Consensus 155 ~~i~~~ipkK~g--~~-----r~~F~~~V~e~~~~~----~v~~iIlaGPg~~K~~f~~~l~~~~~~--------l~~kv 215 (352)
T 3oby_A 155 FEERMGYGKGMG--DS-----RKEFFGEVAAKLESF----DFKYLIVAGPGFAKNDFLDFLKERYPE--------MAKNA 215 (352)
T ss_dssp EEEEC----------C-----CCCHHHHHHHHHHHH----CCSEEEEECSTTHHHHHHHHHHHHCHH--------HHTTE
T ss_pred EEEeccCCCccc--hh-----HHHHHHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHHHHHHHH--------hhCcE
Confidence 999999999863 32 389999999999998 699999999999999999999996533 24578
Q ss_pred EEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCccc
Q 020502 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 320 (325)
Q Consensus 241 ~v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~r~ 320 (325)
+++|+|+||++|++|+|++|+++++|+|+++++|.++|++||++|++| ++||||+++|.+|+++|||+||||+|+++|+
T Consensus 216 v~v~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~ 294 (352)
T 3oby_A 216 VVVDVSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADEFLLE 294 (352)
T ss_dssp EECCCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHHHHHH
T ss_pred EEEECCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEeccchhc
Confidence 899999999999999999999999999999999999999999999999 9999999999999999999999999999986
Q ss_pred C
Q 020502 321 V 321 (325)
Q Consensus 321 ~ 321 (325)
.
T Consensus 295 ~ 295 (352)
T 3oby_A 295 E 295 (352)
T ss_dssp H
T ss_pred c
Confidence 4
No 5
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-83 Score=615.37 Aligned_cols=295 Identities=22% Similarity=0.309 Sum_probs=259.9
Q ss_pred CeeeeeecccCCCceEEEeccCchhHHHHHHhhCCCCeEEEEeEEEEEecccCCCccceEEEEEEEEEEEEEeecCCCCe
Q 020502 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (325)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~~ef~~~~~~ 80 (325)
|||++++. ++|.|+|+||++||||||||||++||.|+|+|+|+|+. | .+++|++++|+|+||+++|||++++
T Consensus 21 Mki~~~~~---~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~----~-~~~~r~~~~L~i~Ve~ief~~~~~~ 92 (364)
T 3obw_A 21 MRILEFDE---KRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGL----G-KESRRIPMTIILKVDYTEFQEFTNR 92 (364)
T ss_dssp ------CC---CCCCEEEECCSHHHHHHHHHHCCTTCEEEEEEEEECC--------CCCEEEEEEEEEEEEEEEETTTTE
T ss_pred cEEEEecC---CCceEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEEc----C-CceEEEEEEEEEEEEEEEecCCCCE
Confidence 99999884 89999999999999999999999999999999999974 3 2579999999999999999999999
Q ss_pred EEEEEEEeecC-cccccccEEEEEEccCcceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEE
Q 020502 81 LRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTIT 159 (325)
Q Consensus 81 Lri~G~i~~~~-e~v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~ 159 (325)
|||+|+|+.+| +++++|+|||++|+||+||+++|+.|++|++++|+++++. ++.+++|+||+|+|+||+|+++++++
T Consensus 93 Lri~G~iv~~~~~~v~~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~~--~~~~~~vv~d~g~A~i~~l~~~~~~~ 170 (364)
T 3obw_A 93 LRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANK--RSRIIIALVDFDEYLIAIPFEQGIKI 170 (364)
T ss_dssp EEEEEEEEECCGGGCCTTCEEEEEECTTCEEEEECSCC----------------CCCEEEEEEETTEEEEEEECSSCEEC
T ss_pred EEEEEEEEeccccccccceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhCc--CCCEEEEEEECCcEEEEEEeCCEEEE
Confidence 99999999988 8999999999999999999999999999999999999985 44999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCccchhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCc
Q 020502 160 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSR 239 (325)
Q Consensus 160 ~~~i~~~ip~K~~~~~s~~~~~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k 239 (325)
++++++++|||++ +++++||++|++++.+++++.++++||||||||+|++|++||.++++ +.+
T Consensus 171 ~~~i~~~iPkK~~-------~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l~~~~~----------~~~ 233 (364)
T 3obw_A 171 LSEKSLRPLNEEE-------GIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAILK----------NKK 233 (364)
T ss_dssp CCEEECGGGCSST-------THHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHHHTTTC----------CSE
T ss_pred EEEEEeeCccchh-------HHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHHHHHhh----------cCe
Confidence 9999999999963 68899999999999999999999999999999999999999988652 347
Q ss_pred EEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCcc
Q 020502 240 IILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 319 (325)
Q Consensus 240 ~~v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~r 319 (325)
+.++|+|+||++||+|+|++|+++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++|
T Consensus 234 i~~vd~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r 313 (364)
T 3obw_A 234 IYIDSVSSATRAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLS 313 (364)
T ss_dssp EEEECCSCSSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGS
T ss_pred EEEEeCCCCchHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 020502 320 LVC 322 (325)
Q Consensus 320 ~~d 322 (325)
+.|
T Consensus 314 ~~d 316 (364)
T 3obw_A 314 SDE 316 (364)
T ss_dssp SCH
T ss_pred ccc
Confidence 864
No 6
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=1.7e-79 Score=590.57 Aligned_cols=299 Identities=21% Similarity=0.315 Sum_probs=284.6
Q ss_pred CeeeeeecccCCCceEEEeccCchhHHHHHHhhCCCCeEEEEeEEEEEecccCCCccceEEEEEEEEEEEEEeecCCCCe
Q 020502 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (325)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~~ef~~~~~~ 80 (325)
|||+++++ .+|.|+|+||++||||||||||++||.|+|+|+|+|++ |+.+++|++++|+|+||+++|||+.+.
T Consensus 3 Mki~~~~~---~~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R~v~~----g~~~~~r~~~~l~i~Ve~~~f~~~~~~ 75 (358)
T 3agj_B 3 MRVEVLDN---KRRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRDVPV----GSGRKERVVMTLRIRLDSIEFQPFTGK 75 (358)
T ss_dssp CEEEECSS---SSCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEEEECC----SSSCCEEEEEEEEEEEEEEEECTTSCE
T ss_pred CEEEEeec---cCCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEec----CCCccEEEEEEEEEEEEEEEcCCCCCE
Confidence 99999997 38999999999999999999999999999999999976 667789999999999999999999999
Q ss_pred EEEEEEEeecC-cccccccEEEEEEccCcceEEEEcc-cChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEE
Q 020502 81 LRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDL-WDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTI 158 (325)
Q Consensus 81 Lri~G~i~~~~-e~v~~G~~HTl~i~~~~~i~i~K~~-wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~ 158 (325)
|||+|+|+.+| +||++|+|||++|+||+||+++|++ |++|++++|++| ..++.+++|+||+|+|+||++++++++
T Consensus 76 Lri~G~i~~~~~~~v~~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~---~~~~~~~~vvvd~~~A~i~~l~~~~~~ 152 (358)
T 3agj_B 76 LRISGIVVEGPDEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG---RARGTAVIAAVDYDEFALAVLAGHGMK 152 (358)
T ss_dssp EEEEEEEEECCGGGCCTTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC---CCCCEEEEEEECSSEEEEEEEESSCEE
T ss_pred EEEEEEEccCCCcccccccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh---CcCCCEEEEEEECCcEEEEEEeCCEEE
Confidence 99999999999 7999999999999999999999987 999999999999 445599999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCccchhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccC
Q 020502 159 TRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 238 (325)
Q Consensus 159 ~~~~i~~~ip~K~~~~~s~~~~~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~ 238 (325)
++.+++.++|||| | +++++++++||++|++++.+++++.++++||||||||+|++|++||.++++++
T Consensus 153 ~~~~i~~~vpkK~--g-~q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L~~~~~~~---------- 219 (358)
T 3agj_B 153 ILEDTSARLPGKD--D-PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQRAMPSL---------- 219 (358)
T ss_dssp EEEEEECCCCCTT--S-TTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHHHHHSTTS----------
T ss_pred EEEEEEecCCCCC--c-hHHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhc----------
Confidence 9999999999998 3 45889999999999999999999889999999999999999999999997642
Q ss_pred cEEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCc
Q 020502 239 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 318 (325)
Q Consensus 239 k~~v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~ 318 (325)
++.++++|+|+++|++|+|+++++.++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++
T Consensus 220 ~i~~v~~s~g~~~gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~ 299 (358)
T 3agj_B 220 KVATVDTSMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLL 299 (358)
T ss_dssp EEEEEECSCCHHHHHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHH
T ss_pred eEEEEEcCCCCchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 020502 319 RLVC 322 (325)
Q Consensus 319 r~~d 322 (325)
|++|
T Consensus 300 r~~d 303 (358)
T 3agj_B 300 HSPD 303 (358)
T ss_dssp TCSS
T ss_pred cCCC
Confidence 9865
No 7
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=5.3e-78 Score=576.90 Aligned_cols=292 Identities=24% Similarity=0.421 Sum_probs=254.5
Q ss_pred CeeeeeecccCCCceEEEeccCchhHHHHHHhhCCCCeEEEEeEEEEEecc-cCCCccceEEEEEEEEEEEEEeecCCCC
Q 020502 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQM-ASGSRDAERVKLKLEIKVEVVDYDKEGS 79 (325)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~-~~g~~~~~r~~~~L~i~Ve~~ef~~~~~ 79 (325)
|||+++++ ++|.|+|+||++||||||||||++||.|+|+|+|+|++++ .+|+++++|++++|+|+||+++|||+++
T Consensus 1 Mki~~~~~---~~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~Rkv~~~~~~~g~~~~er~~~~l~i~Ve~v~f~~~~~ 77 (347)
T 2qi2_A 1 MRILEEDL---KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLKVEKIEFQDFDN 77 (347)
T ss_dssp CEEEEEET---TTTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCEEEEEEEEEEECCTTCSCEEE
T ss_pred CceeEeec---cCcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEecccccCCCCccEEEEEEEEEEEEEEEccCCCC
Confidence 99999997 3899999999999999999999999999999999998854 5567789999999999999999999999
Q ss_pred eEEEEEEEeecCcccccccEEEEEEccCcceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEE
Q 020502 80 VLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTIT 159 (325)
Q Consensus 80 ~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~ 159 (325)
+||++|.++.+|++ ++|+|||++++||+||+++| +|++|++++|++|++++.++.+++|+||+|.|+||+++++++++
T Consensus 78 ~Lri~G~vv~~~~~-~~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~ 155 (347)
T 2qi2_A 78 RLRILGTVIEGPED-TKGKHQSITVTVDSEISITK-EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQ 155 (347)
T ss_dssp EEEECC----------CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEEE
T ss_pred EEecceEEEEcCCC-CCccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEEE
Confidence 99999999999988 78999999999999999999 99999999999999986566899999999999999999999999
Q ss_pred EEEEEEecCCCCCCCccchhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCc
Q 020502 160 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSR 239 (325)
Q Consensus 160 ~~~i~~~ip~K~~~~~s~~~~~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k 239 (325)
++++++++|||++ +|++. .++||++|++++.++ + ++||||||||+|++|.+|+.++++ ++
T Consensus 156 ~~~i~~~~~Kk~~--~s~f~--r~~F~~~V~~~~~~~-d----~~lIlaGPg~~k~~f~~~l~~~~~-----------~~ 215 (347)
T 2qi2_A 156 VGTVYSGRSGKYA--EGNYS--EASYFDQIVNALKNY-S----NSIIILGPGFARDRFARYCAQRGV-----------NV 215 (347)
T ss_dssp EEEEECCHHHHC------CC--HHHHHHHHHHHHHTC-C----SCEEEEESSSHHHHHHHHHHHTSC-----------CC
T ss_pred EEEEeecCCCccc--cchhh--HHHHHHHHHHHHHhc-C----CeEEEECCHHHHHHHHHHHHHhhc-----------ce
Confidence 9999999888775 34332 389999999999998 3 999999999999999999999864 35
Q ss_pred EEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCcc
Q 020502 240 IILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 319 (325)
Q Consensus 240 ~~v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~r 319 (325)
++++++|+|+++|++|+|++|+++++|+|+++++|.++|++|++++++| ++|||+++|.+|+++|||++|||+|+++|
T Consensus 216 i~~v~~s~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~r 293 (347)
T 2qi2_A 216 IGSFPANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMFR 293 (347)
T ss_dssp SCCEECSSSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHHT
T ss_pred EEEEecCCCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEeccccc
Confidence 6789999999999999999999999999999999999999999999998 99999999999999999999999999986
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-51 Score=401.78 Aligned_cols=277 Identities=17% Similarity=0.199 Sum_probs=129.9
Q ss_pred eEEEec--cCc--hhHHHHHHhhCCCCeEEEEeEEEEEecccCCCccceEEEEEEEEEEEEEeecCCCCeEEEEEEEeec
Q 020502 15 SVKMEP--VDS--DDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILE 90 (325)
Q Consensus 15 ~v~l~p--E~~--dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~~ef~~~~~~Lri~G~i~~~ 90 (325)
-|+|.+ ... |-.-+|.+....-..|+++.+|. +.+|+.++.+.+++|..+| |.+|.++++|.|+.+
T Consensus 39 lisl~ipp~~~i~~v~~~l~~e~~~asnIksk~~r~----~v~~ai~s~~~rlkl~~~v------p~~g~v~~~G~~~~e 108 (441)
T 3e20_C 39 MITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRL----SVLSAITSTRERLKLYNKV------PDNGLVIYCGEVIME 108 (441)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHTTCCCCHHHHH----HHHHHHHHHHHHHTTCSSC------TTSCCEEEEEEECCG
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhcc----chhhHHHHHHHHHhhhccC------CCCCEEEEeceeecc
Confidence 356554 322 44456777788888888877766 2334445566667666666 999999999999976
Q ss_pred CcccccccEEEEEEccCcceEEEEc-ccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCC
Q 020502 91 NEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPR 169 (325)
Q Consensus 91 ~e~v~~G~~HTl~i~~~~~i~i~K~-~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~ 169 (325)
+ +.|+|||++|+||+||+++|+ +|++|++++|++++++.. .+++|+||+++|.++++.++++.++++++.++||
T Consensus 109 ~---~~~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~--~~gvVvvD~~ga~i~~l~g~~~evl~~i~~~vPk 183 (441)
T 3e20_C 109 G---NKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQ--RFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPK 183 (441)
T ss_dssp G---GCCEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC----------------------------------------
T ss_pred C---CceeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhCccC--cEEEEEEecCCeEEEEEecCeEEEEEEEEecCCC
Confidence 5 468999999999999999999 899999999999999876 7999999999999999999999999999999999
Q ss_pred CCCC-Cccc------hhHHHHHHHHHHHHHHHhccc---ccCccEEEEECCcccHHHHHH--HHHHHHHhcccccccccc
Q 020502 170 KHGP-AIAG------YESALNKFFENVLQAFLKHVD---FNVVRCAVIASPGFTKDQFHR--HLLLEAERRQLRPIIENK 237 (325)
Q Consensus 170 K~~~-~~s~------~~~~~~~F~~~v~~~l~~~~~---~~~v~~iiIaGPGf~k~~f~~--~l~~~~~~~~~~~~~~~~ 237 (325)
||++ |||+ +++++++||++|++++.++++ +.++++||||||||+|++|++ |+.++++++
T Consensus 184 K~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L~~k--------- 254 (441)
T 3e20_C 184 KHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSR--------- 254 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCHHHHhh---------
Confidence 9766 5776 678899999999999999986 578999999999999999998 676554321
Q ss_pred CcEEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 238 SRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 238 ~k~~v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
.+.++++|+||++|++|+|++ ++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|++
T Consensus 255 -vv~~vdvs~gg~~Gl~EvL~~--~~~~L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l 331 (441)
T 3e20_C 255 -IIKTVDVSYGGDAGFNQAIEL--AADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADL 331 (441)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTC
T ss_pred -eEEEEECCCCCccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEeccc
Confidence 235789999999999999999 48999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 020502 318 F 318 (325)
Q Consensus 318 ~ 318 (325)
.
T Consensus 332 ~ 332 (441)
T 3e20_C 332 D 332 (441)
T ss_dssp C
T ss_pred c
Confidence 6
No 9
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=5.2e-49 Score=387.96 Aligned_cols=272 Identities=14% Similarity=0.170 Sum_probs=238.1
Q ss_pred HHHhhCCCCeEEEEeEEEEEecc--cCCCccceEEEEEEEEEEEEEee-----cCCCCeEEEEEEEeecCcccccccEEE
Q 020502 29 AYNLIAPGDSVMAVTVRKVLRQM--ASGSRDAERVKLKLEIKVEVVDY-----DKEGSVLRIRGKNILENEHVKIGAFHT 101 (325)
Q Consensus 29 Lynli~~GD~V~a~T~Rkv~~~~--~~g~~~~~r~~~~L~i~Ve~~ef-----~~~~~~Lri~G~i~~~~e~v~~G~~HT 101 (325)
+|++|.|||.|.+.|.|+++..+ +....+.+|..+.++|+++..+| .|.+|.+.++|.++.++.+ ++|||
T Consensus 35 isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~~l~~~~~~~~~Glvvf~g~~~~~~g~---~~~~t 111 (437)
T 1dt9_A 35 ISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGK---EKKVN 111 (437)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTCSSCCTTCEEEEEEEEECGGGC---EEEEE
T ss_pred EEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHHHhccCCCCCCCeEEEEeCccccCCCc---eEEEE
Confidence 47888899999999999975321 12223678999999999999999 7889999999998876533 68999
Q ss_pred EEEccCcce--EEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCC-Cccch
Q 020502 102 LEIELHRAF--VLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAGY 178 (325)
Q Consensus 102 l~i~~~~~i--~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~-~~s~~ 178 (325)
++++|++|| +++| +|++|++++|.+++++.. .+++|+||+|.|+||+++++++.++.+++..+|+|+++ |||++
T Consensus 112 l~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~~~~--~~~vvvvd~~~A~i~~~~~~~~~~~~~i~~~~P~K~~~Gg~s~~ 188 (437)
T 1dt9_A 112 IDFEPFKPINTSLYL-CDNKFHTEALTALLSDDS--KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSAL 188 (437)
T ss_dssp EEECCSCCTTCCEEE-EESSCCCHHHHHHCCCCC--EEEEEECCSSCCCEEEEETTEEEEEECCCCCCSCCCCSSCSCSH
T ss_pred EEecCCCCCceeEEE-ecChhhHHHHHHHhcCCC--CEEEEEEeCCceEEEEEcCcEEEEEEEEEecCCCCCcCCCcchH
Confidence 999999999 6777 899999999999999855 89999999999999999999999999999999999886 57753
Q ss_pred ------hHHHHHHHHHHHHHHHhccccc---CccEEEEECCcccHHHHHHH--HHHHHHhccccccccccCcEEEEEcCC
Q 020502 179 ------ESALNKFFENVLQAFLKHVDFN---VVRCAVIASPGFTKDQFHRH--LLLEAERRQLRPIIENKSRIILVHTSS 247 (325)
Q Consensus 179 ------~~~~~~F~~~v~~~l~~~~~~~---~v~~iiIaGPGf~k~~f~~~--l~~~~~~~~~~~~~~~~~k~~v~~~s~ 247 (325)
+++.++||++|++++.+++++. ++++||||||||+|++|.+| +...+ .. ..+.++++|+
T Consensus 189 Rf~R~ree~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~l~~~L--------~~--~vv~~v~~s~ 258 (437)
T 1dt9_A 189 RFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRL--------QS--KVLKLVDISY 258 (437)
T ss_dssp HHHHHHHHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSSSCTTT--------TT--TCCCEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhccChhh--------Hh--cEEEEEecCC
Confidence 6778899999999999999653 79999999999999999763 43222 11 1346789999
Q ss_pred CccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCc
Q 020502 248 GYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 318 (325)
Q Consensus 248 g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~ 318 (325)
|+++|++|+|++. +++|+++++++|.++|++|++++++|++++|||+++|.+|+++|||+||||+|+++
T Consensus 259 g~~~gl~E~l~~~--~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~ 327 (437)
T 1dt9_A 259 GGENGFNQAIELS--TEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLD 327 (437)
T ss_dssp CTTHHHHHHHHHH--SSTTTSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCC
T ss_pred CccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEecCcc
Confidence 9999999999984 99999999999999999999999999999999999999999999999999999999
No 10
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=100.00 E-value=2.2e-41 Score=327.33 Aligned_cols=221 Identities=20% Similarity=0.280 Sum_probs=192.7
Q ss_pred cCCCCeEEEEEEEeecCcccccccEEEEEEccCcceEEEEc-ccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEe
Q 020502 75 DKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVG 153 (325)
Q Consensus 75 ~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~-~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~ 153 (325)
.|.+|..-++|... ..|+|||++++|++||++.|+ +|++|++++|.++++... .+++|+||++.|+||+++
T Consensus 88 ~~~~Gl~vf~~~~~------~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~--~~~vvvvd~~~A~i~~~~ 159 (373)
T 3agk_A 88 TPPNGLVLFCGEDM------STGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNN--AIGIIIVERDQATIGLLK 159 (373)
T ss_dssp CCTTCEEEEEEC-----------CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSC--EEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEEecCC------CCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCCC--CEEEEEEeCCcEEEEEEe
Confidence 67788888888652 568999999999999999998 577899999999999865 999999999999999999
Q ss_pred cceEEEEEEEEEecCCCCCC-Cccc------hhHHHHHHHHHHHHHHHhcc---c-ccCccEEEEECCcccHHHHH--HH
Q 020502 154 RSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHV---D-FNVVRCAVIASPGFTKDQFH--RH 220 (325)
Q Consensus 154 ~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~F~~~v~~~l~~~~---~-~~~v~~iiIaGPGf~k~~f~--~~ 220 (325)
++++.++.+++.++|+|+++ |+|+ +++..++||++|++++.+++ + +.++++||||||||+|++|+ +|
T Consensus 160 ~~~~~~~~~i~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~ 239 (373)
T 3agk_A 160 GARLEVLKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNY 239 (373)
T ss_dssp TTEEEEEEEEECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSC
T ss_pred CcEEEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhh
Confidence 99999999999999999876 5776 78889999999999999998 3 47899999999999999999 89
Q ss_pred HHHHHHhccccccccccCcEE--EEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHH
Q 020502 221 LLLEAERRQLRPIIENKSRII--LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKH 298 (325)
Q Consensus 221 l~~~~~~~~~~~~~~~~~k~~--v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~e 298 (325)
|.+++.. +++ ++|+|+++.+|++|++++ +.++|+++++++|.++|++|+++++++++++|||+++
T Consensus 240 l~~~l~~-----------~vi~~~v~~s~~~~~g~~E~l~~--~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~e 306 (373)
T 3agk_A 240 LDYRLKK-----------ILAPELVDVAYQGLQGLKEAVMK--AEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKD 306 (373)
T ss_dssp SCHHHHT-----------TBCSSCEECCCCHHHHHHHHHHH--CTTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHH
T ss_pred cChHhhh-----------CceeEEEccCCCccccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHH
Confidence 9887753 455 789999999999999996 4999999999999999999999999999999999999
Q ss_pred HHHHHhccCccEEEEecC
Q 020502 299 VEVAHERMAVQTLLITDD 316 (325)
Q Consensus 299 V~~A~e~gAVetLLIsD~ 316 (325)
|.+|+++|||+||||+|+
T Consensus 307 V~~Al~~GaVetLlv~d~ 324 (373)
T 3agk_A 307 VEAALEMGAVKTLLIHES 324 (373)
T ss_dssp HHHHHHTTCEEEEEEETT
T ss_pred HHHHHHhCCccEEEEeCC
Confidence 999999999999999997
No 11
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=99.76 E-value=1.1e-18 Score=150.15 Aligned_cols=74 Identities=26% Similarity=0.402 Sum_probs=71.3
Q ss_pred cCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCccc
Q 020502 245 TSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 320 (325)
Q Consensus 245 ~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~r~ 320 (325)
.||||++|++|+|++. +++|+++++++|.++|++||++|++|++++|||+++|.+|+++|||+||||+|+|+|+
T Consensus 2 ~sy~ge~Gl~E~i~~~--~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~ 75 (166)
T 3ir9_A 2 NAYTDESGLSELVNAA--GEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAE 75 (166)
T ss_dssp -CCSCCSSHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCE
T ss_pred CCcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccce
Confidence 5899999999999985 9999999999999999999999999999999999999999999999999999999987
No 12
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.68 E-value=6.6e-18 Score=138.42 Aligned_cols=68 Identities=50% Similarity=0.705 Sum_probs=65.7
Q ss_pred HhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCcccCCC
Q 020502 256 VLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCS 323 (325)
Q Consensus 256 vl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~r~~d~ 323 (325)
+|++|+++++|+++++++|.++|++||+++++|++++|||+++|.+|+++|||+||||+|+++|++|+
T Consensus 3 ~l~~~~v~~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~ 70 (124)
T 1x52_A 3 SGSSGTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDV 70 (124)
T ss_dssp SCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCCh
Confidence 58999999999999999999999999999999999999999999999999999999999999998764
No 13
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=75.47 E-value=5.3 Score=31.37 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 277 ALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 277 ~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
..+++++.+..- ++...|.++|.+|++.|-+.-++|..+.
T Consensus 16 l~~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~ 55 (120)
T 1xbi_A 16 IQKELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDV 55 (120)
T ss_dssp HHHHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCC
Confidence 456677777766 8999999999999999999999998764
No 14
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.29 E-value=4.7 Score=30.43 Aligned_cols=35 Identities=3% Similarity=0.094 Sum_probs=29.0
Q ss_pred HHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecC
Q 020502 281 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDD 316 (325)
Q Consensus 281 f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~ 316 (325)
.+....+. ++...|.++|.+|++.|-+.-+++..+
T Consensus 6 ~L~la~ka-gk~v~G~~~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 6 ELRKAMET-GKVVLGSNETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HHHHHHHS-SCEEESHHHHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHHh-CCEeECHHHHHHHHHcCCccEEEEeCC
Confidence 33443443 899999999999999999999999877
No 15
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=69.50 E-value=7.7 Score=29.38 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=27.0
Q ss_pred CCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 288 DPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 288 ~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
..+++..|.++|.+|++.|-+.-+++..+.
T Consensus 16 kagk~v~G~~~v~kai~~gka~lViiA~D~ 45 (101)
T 3v7q_A 16 RARKVVSGEDLVIKEIRNARAKLVLLTEDA 45 (101)
T ss_dssp HTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred hhhhcccchhhhHHHHhcCceeEEEEeccc
Confidence 448999999999999999999999998764
No 16
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=69.30 E-value=5.1 Score=30.57 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=29.0
Q ss_pred HHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 281 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 281 f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
++....+ .++.+.|.++|.+|++.|-+.-+++..+.
T Consensus 13 ~L~la~k-agklv~G~~~v~kai~~gkaklViiA~D~ 48 (104)
T 4a18_G 13 KLALVMR-SGKATLGYKSTIKAIRNGTAKLVFISNNC 48 (104)
T ss_dssp HHHHHHH-HSEEEESHHHHHHHHHHTCCCEEEECTTS
T ss_pred HHHHHHH-hCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 3333333 38999999999999999999999998764
No 17
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=69.05 E-value=5.7 Score=30.03 Aligned_cols=35 Identities=3% Similarity=0.084 Sum_probs=28.7
Q ss_pred HHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecC
Q 020502 281 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDD 316 (325)
Q Consensus 281 f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~ 316 (325)
++....+. ++...|.++|.+|++.|-+.-+++..+
T Consensus 7 ~L~la~ka-gkl~~G~~~v~kai~~gka~lViiA~D 41 (101)
T 1w41_A 7 ELRKAQDT-GKIVMGARKSIQYAKMGGAKLIIVARN 41 (101)
T ss_dssp HHHHHHHH-SEEEESHHHHHHHHHHTCCSEEEEETT
T ss_pred HHHHHHHc-CCEeECHHHHHHHHHcCCCcEEEEeCC
Confidence 33333333 899999999999999999999999876
No 18
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=68.89 E-value=8.1 Score=29.21 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=26.9
Q ss_pred CCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 288 DPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 288 ~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
..++.+.|.++|.+|++.|-+.-+++..+.
T Consensus 15 kagk~v~G~~~v~kai~~gka~lViiA~D~ 44 (101)
T 3on1_A 15 RARQLLTGEEQVVKAVQNGQVTLVILSSDA 44 (101)
T ss_dssp HTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred HHCCEeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 348999999999999999999999998764
No 19
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=68.21 E-value=6.7 Score=28.58 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=26.0
Q ss_pred CeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 290 TRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 290 ~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
++...|.++|.+|++.|-+.-++|..+.
T Consensus 10 gk~~~G~~~v~kai~~gkaklViiA~D~ 37 (82)
T 3v7e_A 10 KSIIIGTKQTVKALKRGSVKEVVVAKDA 37 (82)
T ss_dssp SEEEESHHHHHHHHTTTCEEEEEEETTS
T ss_pred CCeeEcHHHHHHHHHcCCeeEEEEeCCC
Confidence 7999999999999999999999998764
No 20
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=66.51 E-value=10 Score=29.64 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=29.1
Q ss_pred HHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 281 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 281 f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
++....+. ++...|.++|.+|++.|-+.-+++..+.
T Consensus 20 ~L~~A~ka-g~l~~G~~~v~kal~~gka~lViiA~D~ 55 (120)
T 1vq8_F 20 ALEVARDT-GAVKKGTNETTKSIERGSAELVFVAEDV 55 (120)
T ss_dssp HHHHHHHS-SCEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHc-CCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 33333333 7899999999999999999999998764
No 21
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=66.49 E-value=10 Score=28.97 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=27.2
Q ss_pred CCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 288 DPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 288 ~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
..++.+.|.++|.+|++.|-+.-+++..+.
T Consensus 19 kagk~v~G~~~v~kai~~gkaklVilA~D~ 48 (105)
T 3u5e_c 19 KSGKYTLGYKSTVKSLRQGKSKLIIIAANT 48 (105)
T ss_dssp TTSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred HhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 448999999999999999999999998764
No 22
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=64.66 E-value=12 Score=29.14 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=29.9
Q ss_pred HHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 280 DFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 280 ~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
.++.... ..++...|.++|.+|++.|-+.-++|..+.
T Consensus 16 ~~L~la~-kagk~~~G~~~t~kai~~gkakLVilA~D~ 52 (112)
T 3iz5_f 16 NKLQLVM-KSGKYTLGYKTVLKTLRSSLGKLIILANNC 52 (112)
T ss_dssp HHHHHHH-TTCEEEESHHHHHHHHHTTCCSEEEECSCC
T ss_pred HHHHHHH-HhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 3344333 448999999999999999999999998764
No 23
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=64.38 E-value=4.8 Score=31.07 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=21.1
Q ss_pred HHHHHHHHhcccc-cCccEEEEECCcccH
Q 020502 187 ENVLQAFLKHVDF-NVVRCAVIASPGFTK 214 (325)
Q Consensus 187 ~~v~~~l~~~~~~-~~v~~iiIaGPGf~k 214 (325)
++|++.+...+.. .-+..+-++||||+.
T Consensus 59 ~~iA~~i~~~l~~~~~i~~vevagpGFIN 87 (109)
T 3gdz_A 59 RQLAEQVLSHLDLNGIANKVEIAGPGFIN 87 (109)
T ss_dssp HHHHHHHHHHCCCTTTEEEEEEETTTEEE
T ss_pred HHHHHHHHHhcCcCCcEeEEEEeCCCeEE
Confidence 4788888777653 347889999999864
No 24
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=63.25 E-value=8.4 Score=29.65 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=26.2
Q ss_pred CeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 290 TRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 290 ~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
++...|.++|.+|++.|-+.-++|..+.
T Consensus 20 gkl~~G~~~v~kai~~gka~lViiA~D~ 47 (110)
T 3cpq_A 20 GKVILGSKRTIKFVKHGEGKLVVLAGNI 47 (110)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTC
T ss_pred CCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 8999999999999999999999998765
No 25
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=63.22 E-value=13 Score=29.75 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 278 LKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 278 le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
+.+++....+. ++...|.++|.+|++.|-+.-+++..+.
T Consensus 29 i~~~L~lA~ka-gklv~G~~~v~kal~~gkaklViiA~D~ 67 (135)
T 2aif_A 29 IINLVQQACNY-KQLRKGANEATKALNRGIAEIVLLAADA 67 (135)
T ss_dssp HHHHHHHHHHT-TCEEESHHHHHHHHHTTCEEEEEEETTC
T ss_pred HHHHHHHHHHc-CCcccCHHHHHHHHHcCCCeEEEEecCC
Confidence 33455544444 7899999999999999999999998754
No 26
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=63.05 E-value=11 Score=29.65 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=26.1
Q ss_pred CeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 290 TRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 290 ~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
++...|.++|.+|++.|-+.-++|..+.
T Consensus 27 gkl~~G~~~v~kal~~gka~lViiA~D~ 54 (124)
T 2fc3_A 27 GRIKKGTNETTKAVERGLAKLVVIAEDV 54 (124)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred CCccCCHHHHHHHHHcCCceEEEEcCCC
Confidence 7899999999999999999999998764
No 27
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=62.50 E-value=11 Score=29.36 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=26.0
Q ss_pred CeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 290 TRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 290 ~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
++...|.++|.+|++.|-+.-++|..+.
T Consensus 26 g~l~~G~~~v~kal~~gka~lViiA~D~ 53 (119)
T 1rlg_A 26 GKVKKGTNETTKAVERGLAKLVYIAEDV 53 (119)
T ss_dssp SEEEESHHHHHHHHTTTCCSEEEEESCC
T ss_pred CCeeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 7899999999999999999999998764
No 28
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=60.91 E-value=14 Score=29.57 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=29.6
Q ss_pred HHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 280 DFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 280 ~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
+++....+ .++...|.++|.+|++.|-+.-++|..+.
T Consensus 22 ~~L~lA~k-~gkl~~G~~~v~kai~~gkakLViiA~D~ 58 (134)
T 2ale_A 22 DVVQQAAN-LRQLKKGANEATKTLNRGISEFIIMAADC 58 (134)
T ss_dssp HHHHHHHH-TTCEEESHHHHHHHHHHTCEEEEEEETTC
T ss_pred HHHHHHHH-cCCcccCchHHHHHHHhCCCeEEEEeCCC
Confidence 33444443 37899999999999999999999998764
No 29
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=60.90 E-value=16 Score=28.65 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=27.0
Q ss_pred CCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 288 DPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 288 ~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
..+....|.++|.+|++.|-+.-++|..+.
T Consensus 17 k~gkl~~G~~~v~kai~~gkakLViiA~D~ 46 (121)
T 2lbw_A 17 KAKNVKRGVKEVVKALRKGEKGLVVIAGDI 46 (121)
T ss_dssp TTTCEEESHHHHHHHHHHSCCCEEEECTTC
T ss_pred HcCCccccHHHHHHHHHcCCceEEEEeCCC
Confidence 458899999999999999999999998764
No 30
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=60.24 E-value=17 Score=28.55 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=26.5
Q ss_pred CCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 289 PTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 289 ~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
.+++..|.++|.+|++.|-+.-++|..+.
T Consensus 29 agklv~G~~~v~kai~~gka~lViiA~D~ 57 (122)
T 3o85_A 29 LQAIKRGANEALKQVNRGKAELVIIAADA 57 (122)
T ss_dssp TTCEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred hCCEeEcHHHHHHHHHcCCceEEEEeCCC
Confidence 37899999999999999999999998765
No 31
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=58.14 E-value=8.7 Score=30.46 Aligned_cols=28 Identities=7% Similarity=0.110 Sum_probs=26.0
Q ss_pred CeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 290 TRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 290 ~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
++++.|.++|.+|++.|-+..++|..+.
T Consensus 26 Gklv~G~~~v~kaIr~gkakLVIiA~Da 53 (125)
T 3vi6_A 26 GKYVLGYKQTLKMIRQGKAKLVILANNC 53 (125)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred CCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 8999999999999999999999998763
No 32
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=56.46 E-value=14 Score=29.24 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 278 LKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 278 le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
+.+++.... ..++...|.++|.+|++.|-+..++|..+.
T Consensus 12 l~~~L~~A~-~~gkl~~G~~~v~Kai~~gka~LViiA~D~ 50 (126)
T 2xzm_U 12 LAKVIKSSN-CQDAISKGLHEVLRTIEAKQALFVCVAEDC 50 (126)
T ss_dssp HHHHHTTTT-SSSCEEESHHHHHHHHHHTCCSEEEEESSC
T ss_pred HHHHHHHHH-HcCCEeecHHHHHHHHHcCCceEEEEeCCC
Confidence 344444333 337899999999999999999999998754
No 33
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=45.52 E-value=22 Score=28.88 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=26.7
Q ss_pred CCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 288 DPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 288 ~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
..++...|.++|.+|++.|-++-++|..+.
T Consensus 47 kagkl~~G~kev~KaI~~gkakLVIIA~D~ 76 (144)
T 2jnb_A 47 NYKQLRKGANEATKTLNRGISEFIVMAADA 76 (144)
T ss_dssp HTTCCCBCHHHHHHHHHHTCEEEEEEETTC
T ss_pred HcCCccccHHHHHHHHHhCCCeEEEEeCCC
Confidence 347899999999999999999999998764
No 34
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=37.93 E-value=50 Score=30.65 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=39.4
Q ss_pred cCccEEEEECCcc--------cHHHHHHHHHHHHHhccccccccccCcEEEE----EcCCCccchHHHHhcChhHHHhhh
Q 020502 200 NVVRCAVIASPGF--------TKDQFHRHLLLEAERRQLRPIIENKSRIILV----HTSSGYKHSLREVLDAPNVMNMIK 267 (325)
Q Consensus 200 ~~v~~iiIaGPGf--------~k~~f~~~l~~~~~~~~~~~~~~~~~k~~v~----~~s~g~~~gl~Evl~~~~v~~~l~ 267 (325)
..++.||+.||-- +++.+.+||+.+... +|... +.+.+.+..+....++..+.+-+.
T Consensus 140 p~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~-----------~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~ 208 (337)
T 4dey_A 140 PSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEG-----------RISITRVTADISLAKRSVLNNPSKHAIIERSNT 208 (337)
T ss_dssp CSSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTT-----------SEEEEEECSCGGGC-------------------
T ss_pred CCCCceEEECCccccchhHHHHHHHHHHhhHHhcCC-----------ccceEeecchhhhcchhhhhcccchhhhccccc
Confidence 4678899999986 366777777777653 43222 334555555555666666666666
Q ss_pred hhhHHHHHHHHHHHHHHhhcC
Q 020502 268 DTKAAQEVQALKDFFNMLTND 288 (325)
Q Consensus 268 d~k~~~e~~~le~f~~~l~~~ 288 (325)
...+..-...+++.++...++
T Consensus 209 ~~~~~ev~seVe~i~~v~~~G 229 (337)
T 4dey_A 209 RSSLAEVQSEIERIFELARTL 229 (337)
T ss_dssp CCCHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHHHhHHHHHHHHHhCC
Confidence 677666556788888777654
No 35
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=34.28 E-value=42 Score=27.19 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 277 ALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 277 ~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
+|.+.++..... +...-|..++.+|++.|-+..+++.++-
T Consensus 27 aL~~vLk~A~~~-g~l~~G~~et~Kal~kg~a~LvvLA~D~ 66 (143)
T 3u5c_M 27 ALKVVLRTALVH-DGLARGLRESTKALTRGEALLVVLVSSV 66 (143)
T ss_dssp HHHHHHHHHHHT-TCEEESHHHHHHHHSSTTCSCEECCSCC
T ss_pred HHHHHHHHHHHc-CCEeEcHHHHHHHHhcCceeEEEEeCCC
Confidence 455555554544 6789999999999999999999988653
No 36
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=33.48 E-value=81 Score=28.24 Aligned_cols=70 Identities=7% Similarity=-0.044 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCcccH-HHHHHHHHHHHHhccccccccccCcEEEEEcCCCccchH
Q 020502 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSL 253 (325)
Q Consensus 181 ~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k-~~f~~~l~~~~~~~~~~~~~~~~~k~~v~~~s~g~~~gl 253 (325)
.+++|...++..+....+..++..|||+|.-... +.|.+.+.+.+.+....... ..+.+.-+..+..+++
T Consensus 240 ~~~~~~~~La~~i~~l~~~ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~---~~~~i~~s~l~~~a~~ 310 (321)
T 3r8e_A 240 VWADIGTIIGESLVNIVRVMDLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYT---DDMYIGKATLENDAGL 310 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHH---TTCEEEECSSGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEeChhcccchHHHHHHHHHHHHhcccccC---CCCEEEEcCCCCcHHH
Confidence 3556666666666666666788999999987654 55667777666543321111 1234455555555544
No 37
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=31.24 E-value=65 Score=28.56 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCcEEEEEcCCCccchHH
Q 020502 182 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 254 (325)
Q Consensus 182 ~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~v~~~s~g~~~gl~ 254 (325)
+++|...++..+....+..++..|||+|.-...+.|.+.+.+.+..... ....+..+..+..+++.
T Consensus 218 ~~~~~~~La~~i~~l~~~~~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~-------~~~~i~~s~lg~~a~~~ 283 (297)
T 4htl_A 218 ITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMESFGL-------RDTIIETATHKNQAGLL 283 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGSTTHHHHHHHHHTTTCC-------TTCEEEECSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccHHHHHHHHHHHHHhcc-------CCCeEEECCcCChHHHH
Confidence 4455555566666666666889999999655545666666666543211 12344556666666554
No 38
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=30.66 E-value=1.1e+02 Score=24.32 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=53.7
Q ss_pred CceEEEeccC--chhHHHHHHhhCCCCeEEEEeEEEEEecccCCCccceEEEEEEEEEEEEEeecCCCCeEEEEEEEeec
Q 020502 13 PGSVKMEPVD--SDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILE 90 (325)
Q Consensus 13 ~g~v~l~pE~--~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~~ef~~~~~~Lri~G~i~~~ 90 (325)
+|.++ ..|| .||+ .-.-....+..+...|+.++......| . + .+.|++..
T Consensus 24 ~G~lk-rvEDl~teDF-v~sA~~s~~~~L~~stv~~I~~s~~~g---~----v-------~ltF~~g~------------ 75 (133)
T 1oa8_A 24 NGELK-KVEDLKTEDF-IQSAEISNDLKIDSSTVERIEDSHSPG---V----A-------VIQFAVGE------------ 75 (133)
T ss_dssp TSCEE-EGGGCCHHHH-HHHHHHCSSEEEEEEEEEEEEECSSTT---E----E-------EEEEEETT------------
T ss_pred CCceE-EeecccHHHH-HHhhccCcccccccceEEEeecCCCCC---e----E-------EEEEeeCC------------
Confidence 46665 7788 8994 445778888999999999886522222 0 1 11333211
Q ss_pred CcccccccEEEEEEccCcceEEEEcccChhhHHHHHH
Q 020502 91 NEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQ 127 (325)
Q Consensus 91 ~e~v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~e 127 (325)
-.+.-++++.+..||=++...|.++.=++=.+
T Consensus 76 -----~~~~v~~ev~~ehPFFV~gqGWsSc~P~~T~~ 107 (133)
T 1oa8_A 76 -----HRAQVSVEVLVEYPFFVFGQGWSSCCPERTSQ 107 (133)
T ss_dssp -----TTEEEEEEEETTCCEEETTTEEEESCHHHHHH
T ss_pred -----CccEEEEEecCCCCcEEcCCcccccCHhHhhH
Confidence 23556888889999999888998865554444
No 39
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=28.71 E-value=84 Score=29.19 Aligned_cols=47 Identities=15% Similarity=-0.002 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCccc-HHHHHHHHHHHHHhcc
Q 020502 182 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERRQ 229 (325)
Q Consensus 182 ~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~-k~~f~~~l~~~~~~~~ 229 (325)
+++|.+.++..+....+..++ .|||+|.-.. .+.|.+.+.+.+.+..
T Consensus 240 l~~~~~~Lg~~i~nl~~~ldP-~IviGGgi~~~~~~~~~~l~~~l~~~~ 287 (366)
T 3mcp_A 240 FEELGEMAGDALASAITLIDG-LIVIGGGLSGASKYILPVLLKEMNAQT 287 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-EEEEESGGGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCC-EEEEEChhhhchHHHHHHHHHHHHHhc
Confidence 455566666666666666678 9999987654 3566777777766543
No 40
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=27.33 E-value=72 Score=27.94 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHh
Q 020502 182 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 227 (325)
Q Consensus 182 ~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~ 227 (325)
++++.+.++..+....+..++..|||+|.-...+.|.+.+.+.+.+
T Consensus 208 ~~~~~~~L~~~i~~l~~~l~p~~IvlgG~i~~~~~~~~~l~~~l~~ 253 (292)
T 2gup_A 208 IERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVED 253 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCccccchHHHHHHHHHHHH
Confidence 4455555666665555566788999999875455666666655543
No 41
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=27.29 E-value=1.6e+02 Score=26.29 Aligned_cols=71 Identities=6% Similarity=-0.018 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCcccH-HHHHHHHHHHHHhccc-cccccccCcEEEEEcCCCccchHH
Q 020502 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQL-RPIIENKSRIILVHTSSGYKHSLR 254 (325)
Q Consensus 181 ~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k-~~f~~~l~~~~~~~~~-~~~~~~~~k~~v~~~s~g~~~gl~ 254 (325)
.+++|.+.++..+....+..++..|||+|.-... +.|.+.+.+.+.+... ... ...+.+.-+..+..+++.
T Consensus 232 ~~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~---~~~~~i~~s~l~~~a~l~ 304 (321)
T 3vgl_A 232 SFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEW---RPHAQVLAAQLGGKAGLV 304 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGG---SCCCEEEECTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeChhhcchHHHHHHHHHHHHHhcccccc---cCCCEEEECCCCCcHHHH
Confidence 4566666777777776666778999999965543 3445556655544321 111 123344555556665543
No 42
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=25.48 E-value=1e+02 Score=27.69 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCcEEEEEcCCCccchHH
Q 020502 182 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 254 (325)
Q Consensus 182 ~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~v~~~s~g~~~gl~ 254 (325)
+++|.+.++..+....+..++..|||+|.=...+.|.+.+.+.+.+.... ...+..+.-+..+..+++.
T Consensus 250 ~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~----~~~~~~i~~s~lg~~a~~~ 318 (327)
T 4db3_A 250 VERFMELLAICFGNIFTANDPHVVALGGGLSNFELIYEEMPKRVPKYLLS----VAKCPKIIKAKHGDSGGVR 318 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCTHHHHHHHHHGGGGSCT----TCCCCEEEECSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccchHHHHHHHHHHHHHHhcc----ccCCCEEEECCCCCcHHHH
Confidence 44555555666666666667899999995444445666555555433211 1123345555566665553
No 43
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=22.25 E-value=1.9e+02 Score=21.64 Aligned_cols=39 Identities=5% Similarity=-0.178 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhcccc-cCccEEEEECCcccHHHHHHHHHHHH
Q 020502 181 ALNKFFENVLQAFLKHVDF-NVVRCAVIASPGFTKDQFHRHLLLEA 225 (325)
Q Consensus 181 ~~~~F~~~v~~~l~~~~~~-~~v~~iiIaGPGf~k~~f~~~l~~~~ 225 (325)
-+.+-+..|-+++.+.-.- ..+ -||++||+ |++|+++..
T Consensus 14 dlirIl~~ieekinELk~dG~eP-DIiL~G~e-----ayef~~e~v 53 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNP-DIILFGRE-----AYNFLSNLL 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-CEEEECHH-----HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCC-CeEEEcHH-----HHHHHHHHH
Confidence 3455555555555443321 122 38889996 667777764
No 44
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=22.16 E-value=1.2e+02 Score=27.04 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCc-----ccHHHHHHHHHHHHHhccccccccccCcEEEEEcCCCccchH
Q 020502 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPG-----FTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSL 253 (325)
Q Consensus 181 ~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPG-----f~k~~f~~~l~~~~~~~~~~~~~~~~~k~~v~~~s~g~~~gl 253 (325)
...++++..+..+....+..++..|||+|.- +..+.+.+.+.+.. ..... ..++.+..++.+..+|+
T Consensus 219 ~~~~~~~~~a~~la~l~~~~dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~----~~~~~--~~~~~i~~s~lg~~ag~ 290 (310)
T 3htv_A 219 FVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYL----RRPLP--HQVVRFIAASSSDFNGA 290 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEECTTTTSTTCCHHHHHHHHHHTS----CTTTT--TTTCEEEECCCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEEeCchhccchhHHHHHHHHHHHHh----hcccc--cCCcEEEEcCCCCcHHH
Confidence 4567777777777777777789999999953 33344444443332 11111 12344566666666654
No 45
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.87 E-value=57 Score=29.25 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=27.9
Q ss_pred cCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 287 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 287 ~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
+.++.+..|.++|.+|++.|-+..++|..+.
T Consensus 131 k~~~~L~~G~keV~KaIekgkAkLVIIA~Da 161 (266)
T 2zkr_f 131 KRPPVLRAGVNTVTTLVENKKAQLVVIAHDV 161 (266)
T ss_dssp SSCCCCCBSHHHHHHHHHTTCCSEEEEESCC
T ss_pred CCCCeeeeChHHHHHHHHhCCceEEEEecCC
Confidence 4567889999999999999999999999765
No 46
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=21.38 E-value=1.4e+02 Score=26.83 Aligned_cols=46 Identities=2% Similarity=-0.120 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhc
Q 020502 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERR 228 (325)
Q Consensus 181 ~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~ 228 (325)
.+++|.+.++..+....+..++..|||+|.-. +.|.+.+.+...+.
T Consensus 264 il~~~~~~La~~i~~l~~~l~P~~IvlgG~i~--~~~~~~l~~~l~~~ 309 (343)
T 2yhw_A 264 ILRTAGTALGLGVVNILHTMNPSLVILSGVLA--SHYIHIVKDVIRQQ 309 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSEEEEESTTH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcH--HHHHHHHHHHHHHh
Confidence 34566666666666666666788999999753 56777777766543
No 47
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=20.90 E-value=1.2e+02 Score=26.65 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHh
Q 020502 182 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 227 (325)
Q Consensus 182 ~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~ 227 (325)
++++.+.++..+....+..++..|||+|.-+..+.|.+.+.+.+.+
T Consensus 220 l~~~~~~La~~i~~l~~~l~p~~IvlgGgv~~~~~~~~~l~~~~~~ 265 (299)
T 2e2o_A 220 LKQGAELLASQAVYLARKIGTNKVYLKGGMFRSNIYHKFFTLYLEK 265 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEESGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEECCccCcHHHHHHHHHHCCC
Confidence 3455555555555555555788999999765556666767666543
No 48
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=20.81 E-value=69 Score=24.75 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=28.2
Q ss_pred hcCCCeEEEcHHHHHHHHhccCccEEEEecCC
Q 020502 286 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 317 (325)
Q Consensus 286 ~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l 317 (325)
.+.|.....|.++|.+|++.|-+..++|..+.
T Consensus 20 ~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~ 51 (113)
T 3jyw_G 20 SPKPYAVKYGLNHVVALIENKKAKLVLIANDV 51 (113)
T ss_dssp SSSSSCEEESHHHHHHTTTTTCCSEEEECSCC
T ss_pred CCCCchhhchHHHHHHHHHcCCceEEEEeCCC
Confidence 46677889999999999999999999998764
Done!